Citrus Sinensis ID: 001357
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1093 | 2.2.26 [Sep-21-2011] | |||||||
| Q4QR29 | 1157 | RNA polymerase-associated | N/A | no | 0.821 | 0.776 | 0.349 | 1e-149 | |
| Q6PD62 | 1173 | RNA polymerase-associated | yes | no | 0.781 | 0.728 | 0.356 | 1e-149 | |
| Q62018 | 1173 | RNA polymerase-associated | yes | no | 0.781 | 0.728 | 0.355 | 1e-148 | |
| Q6DEU9 | 1172 | RNA polymerase-associated | yes | no | 0.782 | 0.729 | 0.350 | 1e-145 | |
| Q03560 | 1150 | TPR repeat-containing pro | yes | no | 0.803 | 0.763 | 0.276 | 3e-95 | |
| O42668 | 1039 | Tetratricopeptide repeat | yes | no | 0.796 | 0.838 | 0.245 | 2e-45 | |
| P89105 | 1077 | RNA polymerase-associated | yes | no | 0.629 | 0.638 | 0.241 | 4e-33 | |
| Q27HV0 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.411 | 0.430 | 0.217 | 3e-09 | |
| P81436 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.411 | 0.430 | 0.217 | 3e-09 | |
| O15294 | 1046 | UDP-N-acetylglucosamine-- | no | no | 0.411 | 0.430 | 0.217 | 3e-09 |
| >sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis GN=ctr9 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust.
Identities = 341/977 (34%), Positives = 535/977 (54%), Gaps = 79/977 (8%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EYFKQGK E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYFKQGKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQ--FAAASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 534
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNSISVTTSYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ + NL+AANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLFAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLR-VAELENAVRVFS 832
L+A H+AP++ L F+ + +Q+ + L+ DE + VL V ELE A R F+
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLK------DEKSNLKAVLNAVKELELAHRYFN 794
Query: 833 HLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAE 892
+LS + FD + C LL A+ H A +++++ +
Sbjct: 795 YLSKVGDKMR--FDLALATSEARQCSDLLSQAQYHVARARKQDEEEK------------- 839
Query: 893 EARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEV 952
E R K E++K+ L +K E E+K LR+ EE +++ EQ R+ R S + E
Sbjct: 840 EMRTKQEQEKEVLRQKLLKEQEEKHLREIEEQ-KKLLEQ-RAQYLEKTRNLLSFTGEMET 897
Query: 953 GHSEKRRRKGGKRRKKD 969
+K+R GG+R KK+
Sbjct: 898 PKEKKQRGGGGRRSKKN 914
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus laevis (taxid: 8355) |
| >sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 530 bits (1364), Expect = e-149, Method: Compositional matrix adjust.
Identities = 330/925 (35%), Positives = 517/925 (55%), Gaps = 71/925 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 534
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSH 833
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLN-----AVKELELAHRYFSY 795
Query: 834 LSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAAR 886
LS + FD T C LL A+ H A +++++ R Q +E R
Sbjct: 796 LSKVGDKMR--FDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLR 853
Query: 887 QAALAEE--ARRKAEEQKKYLLEKR 909
Q L E+ R + +E++K LLE+R
Sbjct: 854 QKLLKEQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Homo sapiens (taxid: 9606) |
| >sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus GN=Ctr9 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust.
Identities = 329/925 (35%), Positives = 516/925 (55%), Gaps = 71/925 (7%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ +A EY+KQGK E+F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K++ AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL+L+ + V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + RA+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASS--SFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL--FNLARL 534
L LD R + + H E +N ++V +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTSYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + A LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPATQSDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ NLYAANG G VLA KG F ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHKGYFREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + +++LYLAR ++ + Q+CK++L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSH 833
L+A H+APS+ L F+ + +Q+ + S L+ + EV + V ELE A R FS+
Sbjct: 741 LKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLN-----AVKELELAHRYFSY 795
Query: 834 LSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNR-------QRQEAAR 886
LS + FD + C LL A+ H A +++++ R Q +E R
Sbjct: 796 LSKVGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLR 853
Query: 887 QAALAEE--ARRKAEEQKKYLLEKR 909
Q L E+ R + +E++K LLE+R
Sbjct: 854 QKLLKEQEEKRLREKEEQKKLLEQR 878
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3) and dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription (By similarity). Required for the trimethylation of histone H3 'Lys-4' (H3K4me3) on genes involved in stem cell pluripotency; this function is synergistic with CXXC1 indicative for an involvement of the SET1 complex. Involved in transcriptional regulation of IL6-responsive genes and in JAK-STAT pathway; may regulate DNA-association of STAT3. Mus musculus (taxid: 10090) |
| >sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus tropicalis GN=ctr9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust.
Identities = 327/932 (35%), Positives = 511/932 (54%), Gaps = 77/932 (8%)
Query: 4 VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQIL 63
+ IP+++++E + + DQLP + +++ ILK E L +W+ + EY+KQ K E F ++L
Sbjct: 6 IEIPLRDTDEVIELDFDQLP-EGDEVISILKQEHTQLHIWIALGLEYYKQVKTEDFVKLL 64
Query: 64 EEGSSPEIDEY--YADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
E + ID Y D +++ L+ L YY + E + K+E AT Y A
Sbjct: 65 E---AARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMAD 121
Query: 122 RIDMHEPSTWVGKGQLLLAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+I M++ + +G+ L +G+ ++QA + F VL +N+PALLG+AC+ FN+ Y
Sbjct: 122 KIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRG 181
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
+L +YK+AL+ +P CP +RLG+G C KL +L KAR AF RAL L+P V ALV LAV+
Sbjct: 182 ALAYYKKALRTNPGCPAGVRLGMGHCFVKLNKLDKARLAFGRALDLNPTCVGALVGLAVL 241
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
+L EA I+ G++ + +A+ I P M LN+LANHFFF + V+ L A T
Sbjct: 242 ELNNKEADSIKNGVQLLSKAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEV 301
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S Y LARS+H + DY++A YY + + F+ P++GLGQ+ + GD +
Sbjct: 302 EAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFA--AASFVLPFFGLGQMYIYRGDKEN 359
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK---AQELLRKAAKIDPRDAQAFIDLG 417
A FEKVL+ YP+N ET+K LG +Y EK A+ L+K + P D +A+I+L
Sbjct: 360 ASQCFEKVLKAYPNNYETMKILGSLYAASDDQEKRDIAKSHLKKVTEQYPDDVEAWIELA 419
Query: 418 ELLISSDTGAALDAFKTA-RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
++L +D AL A+ TA R L +K +VP E+LNN+G +HF G A + F
Sbjct: 420 QILEQTDIQNALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYF----- 474
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN--KVTVLFNLARL 534
L LD R + + H E +N VT +NLARL
Sbjct: 475 ----LASLD------------------------RAKAEAEHDEHYYNAISVTTTYNLARL 506
Query: 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594
E + + + LY+ IL ++ +YVD YLRL A+A+ + N + + EAL++N +P+
Sbjct: 507 YEGLCEFHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPD 566
Query: 595 ALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLE 653
A S++G+L L +W ++ F R + D+Y+ L+LGN + L R + E
Sbjct: 567 AWSLIGNLHLAKQEWGPGQKKFERILKQPSTQNDTYSMLALGNV-WLQTLHQPTRDREKE 625
Query: 654 ATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713
H ++A +Y +V+ + NLYAANG G VLA KG ++D+F QV+EA + +
Sbjct: 626 KRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHKGYVREARDVFAQVREATA-----DI 680
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
DVW+NLAH+Y Q + A++MY+NCLRKFY + + ++LLYLAR ++ + Q+CK+ L
Sbjct: 681 SDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVLLYLARALFKCGKLQECKQIL 740
Query: 774 LRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLR-VAELENAVRVFS 832
L+A H+AP++ L F+ + +Q+ + L+ DE + VL V ELE A R F+
Sbjct: 741 LKARHVAPNDTVLMFNVALVLQRLATLVLK------DEKSNLKAVLNAVKELELAHRYFN 794
Query: 833 HLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAE 892
+LS + FD + C LL A+ H A +++++ +
Sbjct: 795 YLSKVGDKMR--FDLALAASEARQCSDLLSQAQYHVARARKQDEEEK------------- 839
Query: 893 EARRKAEEQKKYLLEKRKLEDEQKRLRQQEEH 924
E R K E++K+ L +K E E+KRL++ EE
Sbjct: 840 ELRAKQEQEKEILRQKLIKEQEEKRLKEIEEQ 871
|
Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3). Xenopus tropicalis (taxid: 8364) |
| >sp|Q03560|YKD1_CAEEL TPR repeat-containing protein B0464.2 OS=Caenorhabditis elegans GN=B0464.2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 350 bits (899), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 260/940 (27%), Positives = 481/940 (51%), Gaps = 62/940 (6%)
Query: 4 VYIPVQNSEEE--VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQ 61
+ IP+++S E+ + + +LP D ++L IL+AE+A L W+ +A EY++Q +V+ F
Sbjct: 14 IAIPLKDSHEDEVIEINCSELP-DGEEVLQILEAEEAKLSYWIEVALEYYRQDRVDLFMM 72
Query: 62 ILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121
ILE S EY V+ +++ L+ L Y+ G E + +K + F AT +N A
Sbjct: 73 ILESAGSRAGLEYEG-VKQDQMRALDILAAYWMTQGYREKAKDKKSDFFSKATVLFNTAD 131
Query: 122 RIDMHEPSTWVGKGQLLL-----AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+I M+E S + L + + E A F V++ + NV L+G+A + FN+
Sbjct: 132 KIAMYEWSHLTVRAWFYLFERDKSTNKYELADQQFNYVVKTNPKNVLPLIGKAVIAFNKK 191
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y ++ ++++A++ +R+GIG C K+G + KA+ AF+RA++++P NV A+
Sbjct: 192 DYKTAIYYFRKAIRQCRHTIADLRVGIGHCFAKMGMMDKAKTAFERAMEIEPYNVSAMCG 251
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L ++ L + ++ + R++ + +AL +LANHFFF + L A
Sbjct: 252 LGIILLNTYDHDSLKHAVSLFGRSYNLQTDHPVALIHLANHFFFKKEIERAWTLAWHAAT 311
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ K+ ++Y + R H++G ++ A YY + + N H +YGLGQ+ +
Sbjct: 312 YNDCDSIKAEAFYQMGRCRHAQGQFDGAYKYYYQARQANNGEH--TLAHYGLGQMYIHRN 369
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIY--VQLGQI-------EKAQELLRKAAKIDP 407
+ A+ F+ V + P+N +T+K LG +Y VQL +K +++L K ++
Sbjct: 370 EIEEAIKCFDTVHKRLPNNTDTMKILGSLYAHVQLNDPAQTAEARQKGRDVLGKYLAVEN 429
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFES 466
D +A IDL +LL ++D +L+ ++ A LL P E+LNN+G ++ ++E
Sbjct: 430 DDYEACIDLAQLLEATDPKRSLELYENAIDLLVTNESIQPQPEMLNNVGALYMSMKQYEK 489
Query: 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT 526
A FK A L+ + T D + +L+ R + +H+ +T
Sbjct: 490 AEHHFKRA------KERLEEQLNT---DEGSLLLE-------RRSAPEKSHL------LT 527
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
+ +NLA LE + TV A +Y+ I+ + Y+D YLRL I + R+ + S + + +
Sbjct: 528 IRYNLALCLEHLCRTVEAEQMYKDIVKECPGYIDGYLRLGCITRDRHQVYESSLWLKQGV 587
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGK--DSYATLSLGNWNYFAAL 643
+ + P +++G+L ++W+ A++ F S + K D Y+ ++LGN +F L
Sbjct: 588 QFDQASPIVWTLIGNLHFAKNEWMPAQKKFEFILSKIFNNKIPDPYSLVALGN-VWFEQL 646
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
N R + E ++++A ++Y + + N+YAANG G VLA K ++ ++D+F+QV+E
Sbjct: 647 LNPSRKKEDEKKYIDRALQMYQKALKLQPKNMYAANGIGCVLAYKRNWNDARDVFSQVRE 706
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ S + DVW+N+AHV + + A++MY + ++KF D+ + YLA+ +Y A
Sbjct: 707 STS-----EFYDVWLNIAHVCMEREQWMAAVQMYSSAMKKFRKENDSTLQHYLAKAYYRA 761
Query: 764 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAE 823
+ K++L A+ N L+F+ + ++K + L+ + T+++V + +
Sbjct: 762 NMLNEAKEALECAMLDQLDNTQLKFNYAIVLKKSAKEVLRGHKMTSEQV-----TAAIDD 816
Query: 824 LENAVRVFSHLSAASNLHLHGFDEKKINT----HVEYCKHLLDAAKIHREAAEREEQQNR 879
L+ A ++F ++S + + T + CK LL AK AA+ ++++ R
Sbjct: 817 LKFADKIFQYISKNDDRQSSHTGMRISRTICAEEAKNCKDLLTQAKHKLAAAQTQDEEER 876
Query: 880 QRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLR 919
+ E + +A + + E + K EK+KLED K LR
Sbjct: 877 RLMEKQEKEKIALQNKMIEEARAKEEAEKQKLED-MKNLR 915
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|O42668|TPR1_SCHPO Tetratricopeptide repeat protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tpr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 245/1000 (24%), Positives = 431/1000 (43%), Gaps = 129/1000 (12%)
Query: 4 VYIPVQNSEEE-VRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQI 62
+ +P+ E++ V + LP DA+++ +IL EQAP + W A EY+ +G EQ I
Sbjct: 14 IEVPLLGQEDQSVEIDCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILI 73
Query: 63 LEEGSSPEIDEYYADVRYERIAILNA-LGVYYTYLGKIETKQRE---KEEHFILATQYYN 118
L+ G D E + ILNA + Y + + +++ ++E Y
Sbjct: 74 LKSGLETLKDS-------ESLCILNANIAAIYLSMAREAMLKKDTDLRDEQLRNVRTYLE 126
Query: 119 KASRIDMHEPSTWVGKG--QLLLA---KGEVEQASSAFKIVLEADRDNVPALLGQACVEF 173
A+ ID + G ++LL K +E A+ F VL+ N+ LG+A + +
Sbjct: 127 AANNIDSKSEINVLLHGIYRILLNPTDKESLENAARCFDFVLQKSGGNILGFLGKARILY 186
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN--V 231
+G Y +L+ Y+RAL +P R+GIGLC + L A A+ R QLDP+N V
Sbjct: 187 AKGNYRSALKLYQRALVSNPQFKPDPRIGIGLCFWNLDMKTDALSAWTRVQQLDPKNTVV 246
Query: 232 EALVALAVMDL---QANEAAGIR---KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
+ + L DL N + ++ K ++ +QRAF+ +A + L + + +
Sbjct: 247 DTYIGLYYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYE 306
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+L E + + + YY + R+YH G+ EKA Y + K + H +
Sbjct: 307 GCIKLAENVIQNSFSSSLIADGYYWMGRAYHQMGNNEKAMASYQKA-KAADDRH--LLSS 363
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ--IEKAQELLRKAA 403
G+GQ+Q+ D SA FE++ E E L LG ++ + + KA+ LL +A
Sbjct: 364 VGIGQIQILQNDLTSAKLTFERIAEQNQSCFEALVVLGCLHASDSKPDLTKARMLLDRAF 423
Query: 404 KID-----PR--DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
+ PR D+ +I L DT +L A L+ A V E+LNNI V
Sbjct: 424 NLVGSSKLPRVVDSDLYITQARLWEKEDTKKSLGFLTRALDFLESAHMSVGPELLNNIAV 483
Query: 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516
+ + G AH G+ I K K+ + DA+ + D
Sbjct: 484 LQYHLGLIPEAH-------GNII-------KAKSVLPDANPELSLLLD------------ 517
Query: 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576
+NLAR E++ +T AS Y IL K+ ++DA +R + + N +
Sbjct: 518 ------------YNLARCEEELGNTSVASEAYVSILEKHPSFIDARIRKCLLQLSNPNEE 565
Query: 577 LSIELV------NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630
E+ ++ L+V + LS +++ + +T R D D Y+
Sbjct: 566 TFKEIRHIMNADSQNLEVRAFFGWYLSKQKRRPVEDPEVRHCSQTLRHWHD-----DIYS 620
Query: 631 TLSLGNWNYFAA----LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
+ LGN A + N++ K + ++ KA + Y + I N +AA G ++LA
Sbjct: 621 LVQLGNAYMRQAREFRVHNDREKLKRQKLYI-KAIQSYDQAIKFDPKNAHAAQGIAIILA 679
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746
+ QF + + ++V+EA + + IN+ + F+ A+++++
Sbjct: 680 QNRQFSKALLILSKVREAIKDATTL------INIGNCLAELKQFSRAIEVFETVYSSTGE 733
Query: 747 NTDAQILLYLARTHYE---AEQWQDCKKSLLRAIHLA----PSNYTLRFDAGVAMQKFSA 799
+ +L L R + + D K +R LA P N +L F+ VA +F
Sbjct: 734 SDTYGVLSCLGRVWLQRGRESKNVDYLKESVRYATLALEKNPENPSLLFN--VAFVQFQL 791
Query: 800 STLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKH 859
L + + D + +L+ ++ F+ L + H Y
Sbjct: 792 CELIRQKPENSRTVEDLN-FAMQQLDASIETFTKLVSVE--------------HPPYSPT 836
Query: 860 LLDA-AKIHREAAEREEQQNRQRQEAARQ--AALAEEAR--RKAEEQKKYLLEKRKLEDE 914
++ AK+ + +R+ ++ Q Q + AA E+AR R+ E+ ++ E+ L+++
Sbjct: 837 SIEQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALLKEK 896
Query: 915 QKRLRQQEEHFQRVKE---QWRSSTPASKRRERSENDDDE 951
Q+R RQ +E Q+++E +WR S + + S +DD+E
Sbjct: 897 QERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEE 936
|
Involved in promoting potassiumm ion uptake. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P89105|CTR9_YEAST RNA polymerase-associated protein CTR9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CTR9 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 200/827 (24%), Positives = 345/827 (41%), Gaps = 139/827 (16%)
Query: 6 IPVQNSEEEVRVALDQ-LPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILE 64
IP++ SEE V + L+ LP D +D+ +L E + + WL IA Y GK + +++E
Sbjct: 21 IPLKASEELVGIDLETDLPDDPTDLKTLLVEENSEKEHWLTIALAYCNHGKTNEGIKLIE 80
Query: 65 EGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124
+D + ER ++ L + L K ++ E +EH + + N I
Sbjct: 81 MA----LDVFQNS---ERASLHTFLTWAHLNLAKGQSLSVETKEHELTQAEL-NLKDAIG 132
Query: 125 MHEPSTWVGKG----QLLLAKGEVEQA---SSAFKIVLEAD--------RDNVPALLGQA 169
+P TW+G +L +G ++A S F + A+ + N LL +A
Sbjct: 133 F-DP-TWIGNMLATVELYYQRGHYDKALETSDLFVKSIHAEDHRSGRQSKPNCLFLLLRA 190
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ + + Y SL+ ++ L ++P R+GIGLC ++L A +++QRALQL+P+
Sbjct: 191 KLLYQKKNYMASLKIFQELLVINPVLQPDPRIGIGLCFWQLKDSKMAIKSWQRALQLNPK 250
Query: 230 NVEALVALAVMDLQ------ANEAA---GIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
N A + + + + + N+ K + + F + + L L +++F
Sbjct: 251 NTSASILVLLGEFRESFTNSTNDKTFKEAFTKALSDLNNIFSENQHNPVLLTLLQTYYYF 310
Query: 281 TGQHFLVEQLTETALAVTNHGPTK----------SHSYYNLARSYHSKGDYEKAGLYYMA 330
G + +T L + +H K S S + R++++ GDY K+ + +
Sbjct: 311 KGDY-------QTVLDIYHHRILKMSPMIAKIVLSESSFWCGRAHYALGDYRKSFIMFQE 363
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV--- 387
S+K K + + GLGQ Q+K ++ FE + + E LG +Y
Sbjct: 364 SLK---KNEDNLLAKLGLGQTQIKNNLLEESIITFENLYKTNESLQELNYILGMLYAGKA 420
Query: 388 -------------QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434
Q EKA + L + K+ + L+ S + +KT
Sbjct: 421 FDAKTAKNTSAKEQSNLNEKALKYLERYLKLTLATKNQLVISRAYLVISQLYELQNQYKT 480
Query: 435 ARTLLKKAGE-------EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487
+ L KA E E+P+EVLNN+ HF G+F A FK A
Sbjct: 481 SLDYLSKALEEMEFIKKEIPLEVLNNLACYHFINGDFIKADDLFKQA------------- 527
Query: 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547
K V D S+ +T+ +N+AR E+ +D + +
Sbjct: 528 -KAKVSDKDESV------------------------NITLEYNIARTNEK-NDCEKSESI 561
Query: 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSMLGDLEL 604
Y + + Y+ A +R + A++ ++ +S E+ N+ L +N S G L
Sbjct: 562 YSQVTSLHPAYIAARIRNLYLKFAQSKIEDSDMSTEM-NKLLDLNKSDLEIRSFYG-WYL 619
Query: 605 KNDDWVKAKETFRAASDAT----DGKDSYATLSLGNWNYFAAL-----RNEKRAPKLEAT 655
KN K E + T + D+YA +SL N A RN K K + +
Sbjct: 620 KNSKERKNNEKSTTHNKETLVKYNSHDAYALISLANLYVTIARDGKKSRNPKEQEKSKHS 679
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+L KA +LY +V+ N++AA G ++ AE + + ++ +V+++ D
Sbjct: 680 YL-KAIQLYQKVLQVDPFNIFAAQGLAIIFAESKRLGPALEILRKVRDSLDNE------D 732
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCLRKF-YYNTDAQILLYLARTHY 761
V +NLAH Y + A++ Y+ L+KF T IL L R Y
Sbjct: 733 VQLNLAHCYLEMREYGKAIENYELVLKKFDNEKTRPHILNLLGRAWY 779
|
The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2. In complex with PAF1, required for normal CLN1 and CLN2 G1 cyclin expression in late G1. Also has a role in chromosome segregation where it appears to be involved in microtubule placement. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in cytoplasmic and nuclear proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Glycosylates a large and diverse number of proteins including histone H2B, AKT1, MLL5, MAPT/TAU and HCFC1. Can regulate their cellular processes via cross-talk between glycosylation and phosphorylation or by affecting proteolytic processing. Involved in insulin resistance in muscle and adipocyte cells via glycosylating insulin signaling components and inhibiting the 'Thr-308' phosphorylation of AKT1, enhancing IRS1 phosphorylation and attenuating insulin signaling. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Oryctolagus cuniculus (taxid: 9986) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
| >sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 189/479 (39%), Gaps = 29/479 (6%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G+ E A + + DN LL + + F R S F A++ +P A
Sbjct: 35 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS- 93
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
+G + GQL +A + ++ AL+L P+ ++ + LA + A + G ++ A
Sbjct: 94 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG---AVQAYVSAL 150
Query: 262 EIYP--YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ P YC + L N G+ +E+ L P + ++ NL ++++G
Sbjct: 151 QYNPDLYCVRS--DLGNLLKALGR---LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A ++ K + F+ Y LG V + F A+ + + L + P++
Sbjct: 206 EIWLAIHHFE---KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 262
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA-ALDAFKTARTL 438
L +Y + G I+ A + R+A ++ P A+ +L L + A A D + TA L
Sbjct: 263 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 322
Query: 439 LKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498
+ LNN+ I E+G E A + ++ AL + + AS
Sbjct: 323 CPTHADS-----LNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVL 371
Query: 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558
Q K + ++ + + N+ L+++ D A Y + +
Sbjct: 372 QQQGKLQEALMHYKEA---IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
DA+ LA+I K N+ +I ALK+ +P+A L DW E +
Sbjct: 429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 487
|
Isoform 2, the mitochondrial isoform (mOGT), is cytotoxic and triggers apoptosis in several cell types including INS1, an insulinoma cell line. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1093 | ||||||
| 359484435 | 1091 | PREDICTED: RNA polymerase-associated pro | 0.992 | 0.994 | 0.811 | 0.0 | |
| 356556372 | 1088 | PREDICTED: RNA polymerase-associated pro | 0.987 | 0.991 | 0.800 | 0.0 | |
| 356530423 | 1086 | PREDICTED: RNA polymerase-associated pro | 0.978 | 0.985 | 0.805 | 0.0 | |
| 449452556 | 1074 | PREDICTED: RNA polymerase-associated pro | 0.977 | 0.994 | 0.802 | 0.0 | |
| 224068420 | 1056 | PAF1 complex component [Populus trichoca | 0.962 | 0.996 | 0.827 | 0.0 | |
| 255550483 | 1065 | tpr repeat nuclear phosphoprotein, putat | 0.968 | 0.994 | 0.796 | 0.0 | |
| 449500473 | 1050 | PREDICTED: LOW QUALITY PROTEIN: RNA poly | 0.955 | 0.994 | 0.785 | 0.0 | |
| 240254442 | 1091 | protein early flowering 8 [Arabidopsis t | 0.977 | 0.978 | 0.749 | 0.0 | |
| 297835872 | 1058 | hypothetical protein ARALYDRAFT_480219 [ | 0.952 | 0.983 | 0.728 | 0.0 | |
| 20197768 | 1115 | putative TPR repeat nuclear phosphoprote | 0.956 | 0.937 | 0.701 | 0.0 |
| >gi|359484435|ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis vinifera] gi|297738576|emb|CBI27821.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1785 bits (4622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 891/1098 (81%), Positives = 988/1098 (89%), Gaps = 13/1098 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHE STWVGKGQLLLAKG+VEQA +AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEASTWVGKGQLLLAKGDVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV+P CP A+R+GIGLC YKLGQ KAR+AFQR LQLDPENVEALVAL +M
Sbjct: 181 SLDLYKRALQVYPDCPAAVRVGIGLCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL N+A+GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLHTNDASGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE NKPH+F+ PYYGLGQVQLKLGDFRS
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+L+NFEKVLE+YP+NCE LKALGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 361 SLSNFEKVLEVYPENCEALKALGHIYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 420
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I+SDTGAALDAFKTAR LLKK GEEVPIE+LNNIGV++FE+GEFE A Q+FK+A+GDGIW
Sbjct: 421 ITSDTGAALDAFKTARGLLKKGGEEVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIW 480
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ +D K +Y DA SM FKDMQLFH+ E DG+ VELPWNKVTVLFNLARLLEQ+++
Sbjct: 481 LSFIDDKAYSYANDARTSMHHFKDMQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNN 540
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
T AS+LYRLILFK+ DY+DAYLRLAAIAKARNN+QLSIELV +ALKVN K PN+L MLG
Sbjct: 541 TKTASILYRLILFKFPDYIDAYLRLAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLG 600
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFR+ASDATDGKDSYATLSLGNWNYFAA+R+EKRAPKLEATHLEKA
Sbjct: 601 DLELKNDDWVKAKETFRSASDATDGKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKA 660
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGVVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 661 KELYTRVLVQHNANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 720
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCLRKFYYNTD+Q+LLYLARTHYEAEQWQDCKK+LLRAIHLA
Sbjct: 721 AHVYFAQGNFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLA 780
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNL 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEV VAEL+NAVR+FS LSAASNL
Sbjct: 781 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRS-----TVAELKNAVRIFSQLSAASNL 835
Query: 841 HLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEE 900
H HGFDEKKI THV YCKHLL+AAK+H EAAEREE QNR R E ARQ LAEEARRKAEE
Sbjct: 836 HFHGFDEKKIETHVGYCKHLLEAAKVHCEAAEREELQNRHRVELARQVNLAEEARRKAEE 895
Query: 901 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRR 960
Q+K+ LE+RK EDE KR+ QQE+HF+RVKEQW+S+ SKR+ERS+ DDDE G SE+RRR
Sbjct: 896 QRKFQLERRKQEDELKRVMQQEQHFERVKEQWKSNNLNSKRKERSQIDDDEGGQSERRRR 955
Query: 961 KGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAN 1020
KGGKRRKKDK S Y++E A AD MD ++E EDED +MN+RE QMN+QDDD E++A
Sbjct: 956 KGGKRRKKDK---SRYDSEEARADAMDDQDEMEDEDTNMNHRESTNQMNNQDDDGEDDAQ 1012
Query: 1021 DRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ-----LRDNTDELQDSDG 1075
D LAAAGLEDSD +D+MA + RR+RA SESD+DEP +++ +R+N+ E+Q+SDG
Sbjct: 1013 DLLAAAGLEDSDAEDDMAGPSSGNRRKRAWSESDEDEPQDQRPESSPVRENSAEVQESDG 1072
Query: 1076 ELRENDHKSNGGAALDDD 1093
E+++++ K NG AA DD+
Sbjct: 1073 EIKDDNDKPNGDAAEDDE 1090
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556372|ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1767 bits (4577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/1099 (80%), Positives = 981/1099 (89%), Gaps = 20/1099 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++Q+R
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ D DNVPALLGQACVEFNRGR+SD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKR LQV+P+CP A+RLGIGLCRYKLGQ KA+QAF+R LQLDPENVE+L+ALA+M
Sbjct: 181 SLELYKRVLQVYPNCPAAVRLGIGLCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 241 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 301 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 360
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 361 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 420
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I SDTGAALDAFKTA TL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 421 ILSDTGAALDAFKTAHTLFKKGGQEVPIELLNNIGVLQFERGEFELARQTFKEALGDGVW 480
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ ++ + K+ IDA+ S LQFKDMQLFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 481 LSFINEENKS-SIDAATSTLQFKDMQLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYD 539
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+ AS+ YRLILFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 540 SGTASIFYRLILFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 599
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWVKAKET R ASDATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 600 ELELKNDDWVKAKETLRTASDATDGKDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKA 659
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KEL TRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 660 KELCTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 719
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 720 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 779
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNL 840
PSNYTLRFDAGVAMQKFSASTLQK +RTADEV VAEL+NAVRVFS LSAASNL
Sbjct: 780 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVR-----ATVAELQNAVRVFSQLSAASNL 834
Query: 841 HLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEE 900
H+HGFDEKKI+THV YC HLL AAK+H EAAE EEQQ RQRQE ARQ ALAEEARRKAEE
Sbjct: 835 HIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEHEEQQVRQRQELARQVALAEEARRKAEE 894
Query: 901 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRR 960
Q+K+ +E+RK EDE KR+++QEEHF+RVKEQW+SS+ SKRRERS DD+E G EK+R+
Sbjct: 895 QRKFQMERRKQEDELKRVQKQEEHFRRVKEQWKSSS-HSKRRERS--DDEEGGTGEKKRK 951
Query: 961 KGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENA 1019
KGGKRRKKDK S+ Y+ E E D+MD + EDE+A +NYR EP QMN DD EENA
Sbjct: 952 KGGKRRKKDKHSKLRYDAEEPEDDLMD-EQGMEDEEADINYREEPQTQMN---DDAEENA 1007
Query: 1020 NDRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEP-FERQ---LRDNTDELQDSD 1074
LAAAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ +R N+ ++Q SD
Sbjct: 1008 QGLLAAAGLEDSDADEETAAPSSSIARRRQALSESDDDEPLLQRQSSPVRQNSADMQLSD 1067
Query: 1075 GELRENDHKSNGGAALDDD 1093
GE+R+ D K+NG D++
Sbjct: 1068 GEIRDGD-KTNGDDGNDEE 1085
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530423|ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1752 bits (4538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 880/1092 (80%), Positives = 981/1092 (89%), Gaps = 22/1092 (2%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWL+IAREYFKQGK++QFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEID+YYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AFKIVL+ DRDNVPALLGQACVEFNRGRYSD
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSD 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRAL V+P CP A+RLGIGLCRYKLGQ KA+QAF+R LDPENVEALVALA+M
Sbjct: 181 SLELYKRALLVYPDCPAAVRLGIGLCRYKLGQFEKAQQAFER---LDPENVEALVALAIM 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL+ NEA GIR GM KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLRTNEATGIRTGMVKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDY+KAG+YYMASVKE+NKPHEF+FPYYGLGQVQ+KLGDF+S
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYDKAGVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLKALGHIYVQLGQ +K Q+ +RKA KIDPRDAQAF++LGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKALGHIYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
I SDTGAALDAFKTARTL KK G+EVPIE+LNNIGV+ FE+GEFE A Q+FK+ALGDG+W
Sbjct: 418 ILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L+ ++ + K+ IDA+ S LQFKDM+LFH E++G+HVE+PW+KVTVLFNLARLLEQ++D
Sbjct: 478 LSFINEEKKS-SIDAATSTLQFKDMKLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLND 536
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+ AS+LYRL+LFKY DY+DAYLRLAAIAKARNN+ LSIELVN+ALKVN K PNALSMLG
Sbjct: 537 SGTASILYRLVLFKYPDYIDAYLRLAAIAKARNNILLSIELVNDALKVNNKCPNALSMLG 596
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWVKAKET RAASDAT+GKDSYA+LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 597 ELELKNDDWVKAKETLRAASDATEGKDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKA 656
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV++QH+SNLYAANGA VVLAEKG FDVSKD+FTQVQEAASGSVFVQMPDVWINL
Sbjct: 657 KELYTRVLIQHSSNLYAANGAAVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINL 716
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF LA+KMYQNCLRKFY+NTD+QILLYLARTHYEAEQWQDC K+LLRAIHLA
Sbjct: 717 AHVYFAQGNFTLAVKMYQNCLRKFYHNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLA 776
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNL 840
PSNYTLRFDAGVAMQKFSASTLQK +RTADEV VAEL+NAVRVFS LSAASNL
Sbjct: 777 PSNYTLRFDAGVAMQKFSASTLQKAKRTADEVR-----ATVAELQNAVRVFSQLSAASNL 831
Query: 841 HLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEE 900
H+HGFDEKKI+THV YC HLL AAK+H EAAEREEQQ RQRQE ARQ A AEEARRKAEE
Sbjct: 832 HIHGFDEKKIDTHVGYCNHLLSAAKVHLEAAEREEQQVRQRQELARQVAFAEEARRKAEE 891
Query: 901 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRR 960
Q+K+ +E+RK EDE KR++QQEEHF+RVKEQW+SS+ SKRRERS +D++ G EK+R+
Sbjct: 892 QRKFQMERRKQEDELKRVQQQEEHFRRVKEQWKSSS-HSKRRERS-DDEEGGGTGEKKRK 949
Query: 961 KGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYR-EPIGQMNDQDDDVEENA 1019
KGGKRRKKDK S+S Y+TE E + M +E EDE+A +NYR EP QMN DD EENA
Sbjct: 950 KGGKRRKKDKHSKSRYDTEEPE-NDMMDEQEMEDEEADINYREEPQTQMN---DDAEENA 1005
Query: 1020 NDRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEPF-ERQ---LRDNTDELQDSD 1074
LAAAGLEDSD D+E APS + ARRR+ALSESDDDEP +RQ R+N+ ++Q SD
Sbjct: 1006 QGLLAAAGLEDSDADEEAPAPSSSIARRRQALSESDDDEPLIQRQSSPARENSADMQLSD 1065
Query: 1075 GELRENDHKSNG 1086
GE+R+ D K+NG
Sbjct: 1066 GEIRDGD-KTNG 1076
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452556|ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1750 bits (4532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 870/1084 (80%), Positives = 961/1084 (88%), Gaps = 16/1084 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A+RLGIGLCRY+L Q GKA+QAF+R LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAAVRLGIGLCRYQLKQYGKAQQAFER---LDPENVEALVGLAII 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 238 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 298 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 418 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 478 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 537
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 538 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 597
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LELKNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 598 ELELKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 657
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 717
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 718 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 777
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNL 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEV VAELENAVRVFS LSAASNL
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRST-----VAELENAVRVFSQLSAASNL 832
Query: 841 HLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEE 900
H HGFDEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+E
Sbjct: 833 HFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADE 892
Query: 901 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRR 960
Q+K+ LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRR
Sbjct: 893 QRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRR 951
Query: 961 KGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAN 1020
KGGKRRKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N
Sbjct: 952 KGGKRRKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQ 1010
Query: 1021 DRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSD 1074
D LA AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSD
Sbjct: 1011 DALAEAGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSD 1070
Query: 1075 GELR 1078
GE+R
Sbjct: 1071 GEIR 1074
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068420|ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa] gi|222833309|gb|EEE71786.1| PAF1 complex component [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1743 bits (4513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1062 (82%), Positives = 960/1062 (90%), Gaps = 10/1062 (0%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK++QFR
Sbjct: 1 MAFVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS EIDEYYADVRYERIAILNALG YY+YLGK+ETKQREKEE+FI AT++YNKA
Sbjct: 61 QILEEGSSHEIDEYYADVRYERIAILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGEVEQAS+AF+IVLE DRDNV ALLGQACVE++RG Y +
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL +KRALQV+P CPGA+RLGIG C YKLG +GKA AFQR LDPENVEALV+LA++
Sbjct: 181 SLTLFKRALQVYPDCPGAVRLGIGHCHYKLGHVGKACLAFQR---LDPENVEALVSLAIL 237
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NEAA IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 238 DLQTNEAAAIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 297
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHSYYNLARSYHSKGDYE A YY ASVKEINKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 298 GPTKSHSYYNLARSYHSKGDYETASRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKN 357
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKAAKIDPRDAQAF+DLGELL
Sbjct: 358 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELL 417
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+DTGAALDAFKTAR+LLKK GEEVPIEVLNNI VIHFE+ E E A Q+FK+ALGDGIW
Sbjct: 418 ISTDTGAALDAFKTARSLLKKGGEEVPIEVLNNIAVIHFEREELELALQNFKEALGDGIW 477
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
LT L+ K TY +DA++S+LQ+KDMQ+F R E +G+ VEL WNKVT LFNLARLLEQ+H+
Sbjct: 478 LTFLEGKANTYEVDATSSLLQYKDMQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHN 537
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
T AS LYRLILFKY DYVDAYLRLAAIAKARNNL LSIELVNEAL VN K PNALSMLG
Sbjct: 538 TETASTLYRLILFKYPDYVDAYLRLAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLG 597
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFRAAS+ATDGKDSYATLSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 598 DLELKNDDWVKAKETFRAASEATDGKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKA 657
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLFTQVQEAASGS+FVQMPDVWINL
Sbjct: 658 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINL 717
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCL+KF+YNTD+QILLYLARTHYEAEQWQDCK++LLRAIHL
Sbjct: 718 AHVYFAQGNFALAVKMYQNCLQKFFYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLT 777
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNL 840
PSNYTLRFDAGVAMQKFSASTLQKT+RT DEV V ELENAVR+FS LSAASNL
Sbjct: 778 PSNYTLRFDAGVAMQKFSASTLQKTKRTVDEVRST-----VDELENAVRLFSQLSAASNL 832
Query: 841 HLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEE 900
+ +GFDEKKINTHVEYCKHLL+AA +HREAAEREEQQNRQR + ARQ ALAEEARRKAEE
Sbjct: 833 YFNGFDEKKINTHVEYCKHLLEAAIVHREAAEREEQQNRQRLDLARQMALAEEARRKAEE 892
Query: 901 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRR 960
Q+K+ LE+RK EDE KR+RQQEEHF+RVKEQW+SST ASKRR+R++ DD E GH EKRRR
Sbjct: 893 QRKFQLERRKQEDELKRVRQQEEHFERVKEQWKSSTSASKRRDRADIDDGEGGHGEKRRR 952
Query: 961 KGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAN 1020
KGGKRRKK+KSSRS YE E EADMMD +EPED+DA++N+REP QMNDQDD+ EENA
Sbjct: 953 KGGKRRKKEKSSRSRYEME--EADMMDDHDEPEDDDANVNFREPGYQMNDQDDNAEENAQ 1010
Query: 1021 DRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQ 1062
D LAAAGLEDSD DD+ A +A RR+RA SESD+DE ER+
Sbjct: 1011 DVLAAAGLEDSDADDDAAAPSSAGRRKRAWSESDEDEISERK 1052
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550483|ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] gi|223544778|gb|EEF46294.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1716 bits (4443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 875/1098 (79%), Positives = 959/1098 (87%), Gaps = 39/1098 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+Y+RIAILNALG YY+YLGKIETKQREKEE+FI AT+YYNKA
Sbjct: 61 QILEEGSSNDIDEYYADVKYDRIAILNALGAYYSYLGKIETKQREKEEYFIQATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE+EQA +AFKIVLE DRDNV ALLGQACVE+NR Y++
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIEQAYNAFKIVLEGDRDNVSALLGQACVEYNRSHYNE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQVHP CPG+ LDPENVEALV+LA++
Sbjct: 181 SLKSYKRALQVHPECPGS---------------------------LDPENVEALVSLAIL 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQ NE GIR+GME MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH
Sbjct: 214 DLQTNEVNGIRRGMESMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYE A YY ASVKE NKP EF+FPYYGLGQVQLKLG+ ++
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYETASRYYWASVKETNKPSEFVFPYYGLGQVQLKLGEIKN 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIY QLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYAQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
ISSDTGAALDA KTAR+LLKK G EVP+EVLNNIGVI+FE+ E E A ++FK+A+GDGIW
Sbjct: 394 ISSDTGAALDALKTARSLLKKGGHEVPVEVLNNIGVIYFEREELELALETFKEAVGDGIW 453
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L LD K KTY IDA+AS+L +KDMQ FH+ E DG+ VEL W+KVT LFNLARLLEQ+H+
Sbjct: 454 LAFLDGKAKTYTIDAAASILHYKDMQFFHQLEQDGHRVELTWDKVTALFNLARLLEQMHN 513
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
A+VLY LILFKY DYVDAYLRLAAI+KARNNLQLSIELVNEALKVN K PNALSMLG
Sbjct: 514 IETANVLYVLILFKYPDYVDAYLRLAAISKARNNLQLSIELVNEALKVNDKCPNALSMLG 573
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
DLELKNDDWVKAKETFRAAS+ATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKA
Sbjct: 574 DLELKNDDWVKAKETFRAASEATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKA 633
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQHT+NLYAANGAGVVLAEKG FDVSKDLF +VQEAASGS+FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDLFMEVQEAASGSIFVQMPDVWINL 693
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNFALA+KMYQNCLRKFYY+TD+QILLYLARTHYEAEQWQ+CKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFALAVKMYQNCLRKFYYSTDSQILLYLARTHYEAEQWQECKKTLLRAIHLA 753
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNL 840
PSNY LRFDAGVAMQKFSASTLQKT+RT DEV V ELENAVR+FS LSA+SNL
Sbjct: 754 PSNYILRFDAGVAMQKFSASTLQKTKRTVDEVRS-----TVDELENAVRLFSQLSASSNL 808
Query: 841 HLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEE 900
H HGFDEKKINTHVEYCKHLL+AAK+HREAAEREEQQNRQRQE ARQ ALAEEARRKAEE
Sbjct: 809 HFHGFDEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQRQEVARQMALAEEARRKAEE 868
Query: 901 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRR 960
QKK+LLEKRK EDE KR+RQQEEHF+RVKEQW++STP SKRR+RSE D++E GHSEKRRR
Sbjct: 869 QKKFLLEKRKQEDELKRVRQQEEHFERVKEQWKTSTPGSKRRDRSEVDEEEGGHSEKRRR 928
Query: 961 KGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAN 1020
KGGKRRKK+KSS+S YE E EADMMD REE EDEDA++NY E ++++QD+D EENA
Sbjct: 929 KGGKRRKKEKSSKSRYEIEEGEADMMDDREELEDEDANVNYGEHKNRLDNQDEDAEENAQ 988
Query: 1021 DRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSDG 1075
D LAAAGLEDSD +D APS T ARRRRALSESDDDE + +L R N+ ELQ+SDG
Sbjct: 989 DLLAAAGLEDSDAED-AAPSST-ARRRRALSESDDDEVLDSKLQSSPVRGNSAELQESDG 1046
Query: 1076 ELRENDHKSNGGAALDDD 1093
E+RE K G AA DD+
Sbjct: 1047 EIREGADKQYGDAAFDDE 1064
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500473|ref|XP_004161106.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase-associated protein CTR9 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1697 bits (4396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 851/1084 (78%), Positives = 938/1084 (86%), Gaps = 40/1084 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSSPEIDEYYADVRYERIAILNALG YY+YLGKIETKQREKEEHFILATQYYNKA
Sbjct: 61 QILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLL KGEVEQA +AFKIVL+ DRDNVPALLGQACVEFNRG YS+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLTKGEVEQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SLE YKRALQV+P CP A LDPENVEALV LA++
Sbjct: 181 SLELYKRALQVYPDCPAA---------------------------LDPENVEALVGLAII 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DL NEA IR GMEKMQRAFEIYP+CAMALNYLANHFFFTGQHFLVEQLTETALA+TNH
Sbjct: 214 DLNTNEAGRIRNGMEKMQRAFEIYPFCAMALNYLANHFFFTGQHFLVEQLTETALAITNH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
GPTKSHS+YNLARSYHSKGDYEKAGLYYMAS KE NKP EF+FPYYGLGQVQLK+GD RS
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRS 333
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
AL+NFEKVLE+YPDNCETLK LGHIYVQLGQ EKAQE LRKA KIDPRDAQAF+DLGELL
Sbjct: 334 ALSNFEKVLEVYPDNCETLKVLGHIYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELL 393
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480
IS+D AALDAFKTA LLKK G+EVPIEVLNN+GV+HFE+ EFE A + FK+ALGDGIW
Sbjct: 394 ISTDESAALDAFKTASILLKKGGQEVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIW 453
Query: 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540
L +D K + I+ASAS+LQ+KD++LF++ E +G + LPW KVT LFNLARLLEQ+H
Sbjct: 454 LDFIDGKVRCPAIEASASVLQYKDVELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHR 513
Query: 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
+SVLYRLILFKY DYVDAYLRLA+IAKARN +QLSIELVN+ALKVN K NALSMLG
Sbjct: 514 IEVSSVLYRLILFKYPDYVDAYLRLASIAKARNYVQLSIELVNDALKVNDKCSNALSMLG 573
Query: 601 DLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKA 660
+LE KNDDWV+AKETFRAA +ATDGKDSYATLSLGNWNYFAALRNEKR PKLEATHLEK+
Sbjct: 574 ELEXKNDDWVRAKETFRAAGEATDGKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKS 633
Query: 661 KELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
KELYTRV+VQH +NLYAANGAGV+LAEKGQFDVSKD+FTQVQEAASG++FVQMPDVWINL
Sbjct: 634 KELYTRVLVQHPANLYAANGAGVILAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINL 693
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
AHVYFAQGNF+LA+KMYQNCLRKFYYNTD QILLYLART+YEAEQWQDCKK+LLRAIHLA
Sbjct: 694 AHVYFAQGNFSLAVKMYQNCLRKFYYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLA 753
Query: 781 PSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNL 840
PSNYTLRFDAGVAMQKFSASTLQKT+RTADEV VAELENAVRVFS LSAASNL
Sbjct: 754 PSNYTLRFDAGVAMQKFSASTLQKTKRTADEVRS-----TVAELENAVRVFSQLSAASNL 808
Query: 841 HLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEE 900
H HGFDEKKI+THV YCKHLL+AA +H +AAE EEQQ RQRQE ARQ ALAE+ARRKA+E
Sbjct: 809 HFHGFDEKKIDTHVGYCKHLLEAAGVHLKAAEHEEQQIRQRQELARQVALAEDARRKADE 868
Query: 901 QKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRR 960
Q+K+ LE+RKLEDE+KR+ QQE+HF+RVKEQW+S TPA KRRERSE DDDE G+SEKRRR
Sbjct: 869 QRKFQLERRKLEDEEKRMMQQEQHFKRVKEQWKSITPA-KRRERSEIDDDEAGNSEKRRR 927
Query: 961 KGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAN 1020
KGGKRRKKD+ +SHYETE A+ DMMD +E +ED +++YRE Q+NDQ DD E N
Sbjct: 928 KGGKRRKKDRKGKSHYETEEADNDMMD-DQELYNEDNNISYRESRSQVNDQGDDFEGNDQ 986
Query: 1021 DRLAAAGLEDSDVDDEM-APSITAARRRRALSESDDDEPFERQL-----RDNTDELQDSD 1074
D LA AGLEDSD +DE APS AARRR S+S++DEP + Q R+N+ L+DSD
Sbjct: 987 DALAEAGLEDSDAEDEAGAPSSNAARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSD 1046
Query: 1075 GELR 1078
GE+R
Sbjct: 1047 GEIR 1050
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254442|ref|NP_178674.6| protein early flowering 8 [Arabidopsis thaliana] gi|207079706|tpd|FAA00428.1| TPA: VERNALIZATION INDEPENDENCE 6 [Arabidopsis thaliana] gi|330250911|gb|AEC06005.1| protein early flowering 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1630 bits (4221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 812/1083 (74%), Positives = 931/1083 (85%), Gaps = 15/1083 (1%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FI AT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKNREKEEQFISATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL+ YKRALQV P CP A+RLGIGLCRYKLGQL KARQAF R LQLDP+NVEALVAL +M
Sbjct: 181 SLQLYKRALQVFPGCPAAVRLGIGLCRYKLGQLDKARQAFDRVLQLDPDNVEALVALGIM 240
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 241 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 300
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ +
Sbjct: 301 GPTKSHSFYNLARSYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELK 360
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 361 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGEL 420
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGI
Sbjct: 421 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGI 480
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH
Sbjct: 481 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIH 538
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ +YRLILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 539 KTEAATFMYRLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 598
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 599 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 658
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 659 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 718
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFAL +KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 719 LAHVYFAQGNFALTVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 778
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASN 839
PSNYT RFD G MQK S+STLQK +RTADEV VAE ENAVRVF+ LSAAS+
Sbjct: 779 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRS-----TVAEAENAVRVFTQLSAASD 833
Query: 840 LHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAE 899
LH+HGFD KKI THV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAE
Sbjct: 834 LHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAE 893
Query: 900 EQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKR 958
EQ+KY LEKRK E+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+R
Sbjct: 894 EQRKYQLEKRKQEEELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERR 953
Query: 959 RRKGGKRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVE 1016
R+KGGKRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+
Sbjct: 954 RKKGGKRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVD 1013
Query: 1017 ENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDS 1073
++A+D LAAAGLED DVDD+ P+ + RRRRALS SD++ + N+ E ++S
Sbjct: 1014 DDAHDLLAAAGLEDPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEES 1072
Query: 1074 DGE 1076
+GE
Sbjct: 1073 NGE 1075
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297835872|ref|XP_002885818.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] gi|297331658|gb|EFH62077.1| hypothetical protein ARALYDRAFT_480219 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1576 bits (4080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/1083 (72%), Positives = 905/1083 (83%), Gaps = 42/1083 (3%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK REKEE FILAT+YYNKA
Sbjct: 61 QILEEGSSSDIDEYYADVKYERIAILNALGAYYSYLGKTETKHREKEEQFILATRYYNKA 120
Query: 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
SRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPALLGQA VEFNRGR+S+
Sbjct: 121 SRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPALLGQASVEFNRGRFSE 180
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
SL YKRALQV P CP A LDP+NVEALVAL +M
Sbjct: 181 SLNLYKRALQVFPGCPAA---------------------------LDPDNVEALVALGIM 213
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300
DLQAN++ G+RKGM++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT H
Sbjct: 214 DLQANDSIGMRKGMDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTH 273
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFR 359
GPTKSHS+YNLARSYHSKGDYEKAG+YYMA++KE NKP EF+FPY+GLGQVQLKLG+ +
Sbjct: 274 GPTKSHSFYNLARSYHSKGDYEKAGMYYMAAIKETNNKPQEFVFPYFGLGQVQLKLGELK 333
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
++ NFEKVLE+YPDNCETLKALGH+Y QLGQ +KA E +RKA K+DPRDAQAF+ LGEL
Sbjct: 334 GSVFNFEKVLEVYPDNCETLKALGHLYTQLGQNDKALEYMRKATKLDPRDAQAFVGLGEL 393
Query: 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
LISSDTGAALDAFK ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA +FK+ALGDGI
Sbjct: 394 LISSDTGAALDAFKMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALDNFKEALGDGI 453
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
W++ LD K + S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQ+H
Sbjct: 454 WISFLDEKEN--LEQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQLH 511
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
T AA+ LY+LILFKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+L
Sbjct: 512 KTEAATFLYQLILFKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLL 571
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G+LELKNDDWVKAKETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEK
Sbjct: 572 GELELKNDDWVKAKETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEK 631
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719
AKELYT+V+ QH SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+N
Sbjct: 632 AKELYTKVLTQHNSNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVN 691
Query: 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779
LAHVYFAQGNFALA+KMYQNCLRKF+ NTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL
Sbjct: 692 LAHVYFAQGNFALAVKMYQNCLRKFFNNTDSQILLYLARTHYEAEQWQECKKTLLRAIHL 751
Query: 780 APSNYTLRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASN 839
PSNYT RFD G MQK S+STLQK +RTADEV VAE ENAVRVF+ LSAAS+
Sbjct: 752 TPSNYTFRFDLGAVMQKSSSSTLQKKKRTADEVRS-----TVAEAENAVRVFTQLSAASD 806
Query: 840 LHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAE 899
LH+HGFD KKI THV+YC HLL+AAK+HREAAEREE QNRQR E ARQAALAEEARRKAE
Sbjct: 807 LHVHGFDSKKIQTHVQYCSHLLEAAKVHREAAEREELQNRQRLEVARQAALAEEARRKAE 866
Query: 900 EQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKR 958
EQ+KY LEKRK E+E +RL+Q+EE QR+KEQW+SSTP S KR++R E+DD E SE+R
Sbjct: 867 EQRKYQLEKRKQEEELRRLKQEEEKIQRIKEQWKSSTPGSHKRKDRVEDDDGEGKPSERR 926
Query: 959 RRKGGKRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVE 1016
R+KGGKRRKKDKSSR+ HYE + EA MD E EDEDA+ NY RE + ++ V+
Sbjct: 927 RKKGGKRRKKDKSSRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTNQEAEEPVD 986
Query: 1017 ENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDN---TDELQDS 1073
++A+D LAAAGLED DV D+ P+ + RRRRALS SD++ + + N T E ++S
Sbjct: 987 DDAHDLLAAAGLEDPDVYDDEVPA-SGVRRRRALSSSDEEGELMEESQPNQSPTREKEES 1045
Query: 1074 DGE 1076
+GE
Sbjct: 1046 NGE 1048
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20197768|gb|AAM15237.1| putative TPR repeat nuclear phosphoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1545 bits (3999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 793/1130 (70%), Positives = 911/1130 (80%), Gaps = 85/1130 (7%)
Query: 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFR 60
MA VYIPVQNSEEEVRV LDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGK+EQFR
Sbjct: 1 MASVYIPVQNSEEEVRVVLDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFR 60
Query: 61 QILEEGSSP---------------EIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105
QILEEGSS +IDEYYADV+YERIAILNALG YY+YLGK ETK RE
Sbjct: 61 QILEEGSSSGKQLYDDAASICSRIDIDEYYADVKYERIAILNALGAYYSYLGKTETKNRE 120
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KEE FI AT+YYNKASRIDMHEPSTWVGKGQLLLAKGE++ A AFKIVL+ DNVPAL
Sbjct: 121 KEEQFISATRYYNKASRIDMHEPSTWVGKGQLLLAKGEIDNALQAFKIVLDTAPDNVPAL 180
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA-- 223
LGQA VEFNRGR+S+SL+ YKLGQL KARQAF R
Sbjct: 181 LGQASVEFNRGRFSESLQL-----------------------YKLGQLDKARQAFDRVLQ 217
Query: 224 ------------------------------LQLDPENVEALVALAVMDLQANEAAGIRKG 253
LQLDP+NVEALVAL +MDLQAN++ G+RKG
Sbjct: 218 ASGTGMFISSSYDIADCMRQQIVLITIILFLQLDPDNVEALVALGIMDLQANDSIGMRKG 277
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
M++MQ+AFEIYPYCA ALNYLANHFFFTGQHFLVEQLTETALAVT HGPTKSHS+YNLAR
Sbjct: 278 MDRMQQAFEIYPYCASALNYLANHFFFTGQHFLVEQLTETALAVTTHGPTKSHSFYNLAR 337
Query: 314 SYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
SYHSKGD+EKAG+YYMA++KE N PHEF+FPY+GLGQVQLKLG+ + ++ NFEKVLE+Y
Sbjct: 338 SYHSKGDFEKAGMYYMAAIKETNNNPHEFVFPYFGLGQVQLKLGELKGSVFNFEKVLEVY 397
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAF 432
PDNCETLKALGH+Y QLGQ EKA E +RKA K+DPRDAQAF+ LGELLISSDTGAALDAF
Sbjct: 398 PDNCETLKALGHLYTQLGQNEKALEYMRKATKLDPRDAQAFVGLGELLISSDTGAALDAF 457
Query: 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492
K ARTL+KK G+EVPIEVLN+IG +HFE+ EFESA ++FK+ALGDGIW++ LD K +
Sbjct: 458 KMARTLMKKGGQEVPIEVLNDIGALHFEREEFESALENFKEALGDGIWISFLDEKEN--L 515
Query: 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552
S+L +KD +FHR G+ V++PWNKVT LFNLARLLEQIH T AA+ +YRLIL
Sbjct: 516 EQTGVSVLGYKDTGIFHRLIESGHSVDVPWNKVTTLFNLARLLEQIHKTEAATFMYRLIL 575
Query: 553 FKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 612
FKY Y+DAYLRLAA AKA+NNL L+IELVNEALKV+ K PNALS+LG+LELKNDDWVKA
Sbjct: 576 FKYPGYIDAYLRLAASAKAQNNLPLAIELVNEALKVDDKNPNALSLLGELELKNDDWVKA 635
Query: 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672
KETFRAA+DATDGKDSYA LSLGNWNYFAA+RNEKR PKLEATHLEKAKELYT+V+ QH
Sbjct: 636 KETFRAANDATDGKDSYAILSLGNWNYFAAMRNEKRNPKLEATHLEKAKELYTKVLTQHN 695
Query: 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732
SN+YAANG+G+VLAEKGQFD++KD+FTQVQEAASGSVF+QMPDVW+NLAHVYFAQGNFAL
Sbjct: 696 SNMYAANGSGIVLAEKGQFDIAKDVFTQVQEAASGSVFLQMPDVWVNLAHVYFAQGNFAL 755
Query: 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792
+KMYQNCLRKF+YNTD+QILLYLARTHYEAEQWQ+CKK+LLRAIHL PSNYT RFD G
Sbjct: 756 TVKMYQNCLRKFFYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLTPSNYTFRFDLGA 815
Query: 793 AMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNLHLHGFDEKKINT 852
MQK S+STLQK +RTADEV VAE ENAVRVF+ LSAAS+LH+HGFD KKI T
Sbjct: 816 VMQKSSSSTLQKKKRTADEVRS-----TVAEAENAVRVFTQLSAASDLHVHGFDSKKIQT 870
Query: 853 HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLE 912
HV+YC HLL+AAK+HREAAE+EE QNRQR E ARQAALAEEARRKAEEQ+KY LEKRK E
Sbjct: 871 HVQYCSHLLEAAKVHREAAEQEELQNRQRLEVARQAALAEEARRKAEEQRKYQLEKRKQE 930
Query: 913 DEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSENDDDEVGHSEKRRRKGGKRRKKDKS 971
+E +RL+Q+EE FQR+KEQW+SSTP S KR++R E+DD E SE+RR+KGGKRRKKDKS
Sbjct: 931 EELRRLKQEEEKFQRIKEQWKSSTPGSNKRKDRVEDDDGESKPSERRRKKGGKRRKKDKS 990
Query: 972 SRS-HYETEYAEADMMDYREEPEDEDASMNY-REPIGQMNDQDDDVEENANDRLAAAGLE 1029
SR+ HYE + EA MD E EDEDA+ NY RE + ++ V+++A+D LAAAGLE
Sbjct: 991 SRARHYEDDEEEAATMDDHNEVEDEDANTNYNREDEMTTQEAEEPVDDDAHDLLAAAGLE 1050
Query: 1030 DSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTD---ELQDSDGE 1076
D DVDD+ P+ + RRRRALS SD++ + N+ E ++S+GE
Sbjct: 1051 DPDVDDDEVPT-SGVRRRRALSSSDEEGELMEESHPNSSPQKEKEESNGE 1099
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1093 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-26 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-23 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-13 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-10 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-09 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 5e-09 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 5e-09 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 4e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 9e-08 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 8e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 5e-06 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 6e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-05 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 5e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 5e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-04 | |
| COG1729 | 262 | COG1729, COG1729, Uncharacterized protein conserve | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| TIGR02794 | 346 | TIGR02794, tolA_full, TolA protein | 3e-04 | |
| TIGR02795 | 117 | TIGR02795, tol_pal_ybgF, tol-pal system protein Yb | 5e-04 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 7e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 0.001 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.001 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.001 | |
| pfam13371 | 73 | pfam13371, TPR_9, Tetratricopeptide repeat | 0.001 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.002 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.002 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 0.002 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.002 | |
| PRK00247 | 429 | PRK00247, PRK00247, putative inner membrane protei | 0.002 | |
| PRK03963 | 198 | PRK03963, PRK03963, V-type ATP synthase subunit E; | 0.002 | |
| COG4783 | 484 | COG4783, COG4783, Putative Zn-dependent protease, | 0.002 | |
| COG3118 | 304 | COG3118, COG3118, Thioredoxin domain-containing pr | 0.003 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.003 | |
| COG3071 | 400 | COG3071, HemY, Uncharacterized enzyme of heme bios | 0.003 | |
| PRK11788 | 389 | PRK11788, PRK11788, tetratricopeptide repeat prote | 0.003 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.004 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.004 | |
| pfam05672 | 171 | pfam05672, MAP7, MAP7 (E-MAP-115) family | 0.004 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-26
Identities = 151/707 (21%), Positives = 256/707 (36%), Gaps = 101/707 (14%)
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
L G++E A +++ L D ++ A LG A + R+ ++ L P A
Sbjct: 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ L L LG + A A+++A+ L P N+ L+ALA + ++A E K + +
Sbjct: 196 LLLKGDLLLS-LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALL 254
Query: 259 RAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315
+ P Y +++ ++ E ET P + S
Sbjct: 255 KKAPNSPLAHYLKALVDFQKKNY---------EDARETLQDALKSAPEYLPALLLAGASE 305
Query: 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+ G+ E+A Y +K P+ L +QL+LG A+ L + PD+
Sbjct: 306 YQLGNLEQAYQYLNQILKYA--PN-SHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD 362
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS----------DT 425
L LG Y+ LG EKA E L KA ++DP +A A LG +S +T
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLET 422
Query: 426 GAALD----------------------AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463
A LD A A+ L KK + + L +G I+ KG+
Sbjct: 423 AAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL--LGAIYLGKGD 480
Query: 464 FESAHQSFKDALG-------DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516
A ++F+ AL L +D + + ++ +F+ + D
Sbjct: 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEG----NPDDAIQRFEKVLTI-----DPK 531
Query: 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576
++ + LA L + + A ++ L LA + L+
Sbjct: 532 NLR-------AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584
Query: 577 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR-AASDATDGKDSYATLSLG 635
++ ++NEA P A MLG +L D KA +F+ + D + L+
Sbjct: 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA 644
Query: 636 NW---NYFAALRNEKRAPK----------------LEATHLEKAKELYTRVIVQHTSNLY 676
NY A+ + KRA + L A E AK++ + QH
Sbjct: 645 YAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
G + + + + + + + A S I L A GN A A+K
Sbjct: 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA------IKLHRALLASGNTAEAVKT 758
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ L+ + DA + LA + + + K + AP N
Sbjct: 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-23
Identities = 120/545 (22%), Positives = 214/545 (39%), Gaps = 48/545 (8%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE 143
A L+ LG YL + ++ A +Y KA+ +D + G L++G+
Sbjct: 364 AALSLLG--EAYLALGDFEK---------AAEYLAKATELDPENAAARTQLGISKLSQGD 412
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
+A + + + D + A L G++ +L K+ + P L +
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNL-L 471
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G G L KAR+AF++AL ++P+ A LA +D+Q + + ++ I
Sbjct: 472 GAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ---RFEKVLTI 528
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
P A+ LA + TG E A + P + LA+ Y KG +K
Sbjct: 529 DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKK 585
Query: 324 AGLYYMASVKEINKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A +A + E + LG+ QL GD A+++F+K+L + PD+ L L
Sbjct: 586 A----LAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA 442
Y + KA L++A ++ P + +A I L +LL+ A K A++L K+
Sbjct: 642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL--AAKRTESAKKIAKSLQKQH 699
Query: 443 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502
+ L G ++ + ++ +A Q+++ AL + + S + ++
Sbjct: 700 PKAALGFEL--EGDLYLRQKDYPAAIQAYRKAL----------KRAPS-----SQNAIKL 742
Query: 503 KDMQLFHRFENDGNHVELPW-----NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557
L + W N + LA L D A Y+ ++ K D
Sbjct: 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
LA + + + ++E ALK+ P L LG L ++ + +A R
Sbjct: 803 NAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861
Query: 618 AASDA 622
A +
Sbjct: 862 KAVNI 866
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 5e-14
Identities = 159/806 (19%), Positives = 271/806 (33%), Gaps = 150/806 (18%)
Query: 8 VQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGS 67
+N +E R +D+ +L A+ +D L+ G +E +
Sbjct: 171 AENRFDEARALIDE----------VLTADPGNVDALLLKGDLLLSLGNIELALAAYRK-- 218
Query: 68 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127
+R IA+L AL G+ E A ++ + + +
Sbjct: 219 -------AIALRPNNIAVLLALATILIEAGEFE-----------EAEKHADALLKKAPNS 260
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
P K + K E A + L++ + +PALL E+ G + ++ +
Sbjct: 261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQ 320
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247
L+ P+ A RL + + +LG++ +A AL LDP++ AL L L +
Sbjct: 321 ILKYAPNSHQARRL-LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307
K E + +A E+ P A A L G ETA + P +
Sbjct: 380 E---KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD---PELGRA 433
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSAL 362
L SY G ++KA +A+ K++ + + LG + L GD A
Sbjct: 434 DLLLILSYLRSGQFDKA----LAAAKKLEKKQPDNAS----LHNLLGAIYLGKGDLAKAR 485
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS 422
FEK L I PD L I +Q G + A + K IDP++ +A + L L
Sbjct: 486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY-- 543
Query: 423 SDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDG-- 478
+ A L+KA E P IE + + KG+ + A +A
Sbjct: 544 ----LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599
Query: 479 ---IWLTLLDS---------------KTKTYVIDASASMLQFKDMQLFHR---------- 510
WL L + K D++ ++L D +
Sbjct: 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLK 659
Query: 511 --FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E ++ E LA+LL T +A + + + ++ + +
Sbjct: 660 RALELKPDNTEA-------QIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712
Query: 569 AKARNNLQLSIELVNEALKV----------------NGKYPNA----------------- 595
+ + +I+ +ALK +G A
Sbjct: 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772
Query: 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655
+ L +L L D+ KA + ++ D+ L N A L E + P+
Sbjct: 773 RTALAELYLAQKDYDKAIKHYQTVVKKA--PDNAVVL-----NNLAWLYLELKDPRALE- 824
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+ E+A +L + + G +L EKG+ D + L + A +
Sbjct: 825 YAERALKL-------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA-----AA 872
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCL 741
+ +LA A G A A K L
Sbjct: 873 IRYHLALALLATGRKAEARKELDKLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-14
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
NL Y+ GDY++A YY ++ E++ + YY L KLG + AL ++EK
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKAL-ELD--PDNADAYYNLAAAYYKLGKYEEALEDYEK 59
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LE+ PDN + LG Y +LG+ E+A E KA ++DP
Sbjct: 60 ALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-13
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
LG + KLGD+ AL +EK LE+ PDN + L Y +LG+ E+A E KA +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKK 441
+DP +A+A+ +LG AL+A++ A L
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-11
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G L G+ ++A ++ LE D DN A A + G+Y ++LE Y++AL+
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P A +GL YKLG+ +A +A+++AL+LDP
Sbjct: 63 LDPDNAKAYYN-LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-10
Identities = 67/257 (26%), Positives = 102/257 (39%), Gaps = 14/257 (5%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHF 278
+ ALQ DP + EA L + A G EK +++A + L LA +
Sbjct: 45 LKNALQKDPNDAEARFLLG----KIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
G+ V + + G + + LA Y G E A Y ++
Sbjct: 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA--YLGLGQLELAQKSYEQALA---ID 155
Query: 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
++ GL Q+ L F A ++VL P N + L G + + LG IE A
Sbjct: 156 PRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
Query: 399 LRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458
RKA + P + + L +LI G +A K A LLKKA L ++
Sbjct: 216 YRKAIALRPNNIAVLLALATILIE--AGEFEEAEKHADALLKKAPNSPLAHYLK--ALVD 271
Query: 459 FEKGEFESAHQSFKDAL 475
F+K +E A ++ +DAL
Sbjct: 272 FQKKNYEDARETLQDAL 288
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-09
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
E L LG++Y +LG ++A E KA ++DP +A A+ +L L ++ A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK------LGKYEEAL 54
Query: 437 TLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+KA E P + N+G+ +++ G++E A ++++ AL
Sbjct: 55 EDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95
|
Length = 100 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 34/133 (25%), Positives = 44/133 (33%), Gaps = 38/133 (28%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L L+ GD+ A N EK LE P H Y +LG+ + A E RKA
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ P + +VLNN G +G
Sbjct: 98 LAPNNG--------------------------------------DVLNNYGAFLCAQGRP 119
Query: 465 ESAHQSFKDALGD 477
E A Q F+ AL D
Sbjct: 120 EEAMQQFERALAD 132
|
Length = 250 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 9/141 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ S LA + + +GD + L + + G Q++ G+F A
Sbjct: 63 NPEDLSIAKLATALYLRGD-ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN--GNFGEA 119
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
++ K + P + E LG QLG+ ++A+ R+A ++ P + +LG L+
Sbjct: 120 VSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179
Query: 422 SSDTGAALDAFKTARTLLKKA 442
+ A TLL A
Sbjct: 180 LRGD------LEDAETLLLPA 194
|
Length = 257 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223
ALL + + G Y ++LE+Y++AL++ P + YKLG+ +A + +++A
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-DAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 224 LQLDPENVEALVALAVMDLQANE 246
L+LDP+N +A L + + +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGK 83
|
Length = 100 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L L+ GD A N +K LE PD+ AL Y QLG++EKA++ R+A ++P
Sbjct: 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP 96
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE----EVPIEVLNNIGVIHFEKGE 463
+ + G L ++ A ++A E P L N G+ + G+
Sbjct: 97 NNGDVLNNYGTFLCQ------QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150
Query: 464 FESAHQSFKDAL 475
F+ A + AL
Sbjct: 151 FDKAEKYLTRAL 162
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 9e-08
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 45/207 (21%)
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
IR+ + L + G L A++ +AL+ DP++ A +ALA+ L E
Sbjct: 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELE-------- 82
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+A + + AL + + N
Sbjct: 83 ----KAEDSF---------------------------RRALTLNPNNGD---VLNNYGTF 108
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
+G YE+A + ++++ P G LK GDF A + L+I P
Sbjct: 109 LCQQGKYEQAMQQFEQAIEDPLYPQPAR-SLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRK 401
E+L L +Y GQ + A+ L +
Sbjct: 168 RPESLLELAELYYLRGQYKDARAYLER 194
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 42/227 (18%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
+S D KA + + L A Y +QG +E ++ L++ + E D
Sbjct: 21 SSRTTDRNKAAKIRVQL----ALGYLEQGDLEVAKENLDK--ALEHDPDDYLAY------ 68
Query: 86 LNALGVYYTYLGKIETKQREKEE-----------------------HFILATQYYNKASR 122
AL +YY LG++E + + A Q + +A
Sbjct: 69 -LALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127
Query: 123 IDM--HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD 180
+ + G L G+ ++A L+ D +LL A + + RG+Y D
Sbjct: 128 DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + +R Q + ++ LGI + R LG A + QL
Sbjct: 188 ARAYLERYQQTYNQTAESLWLGIRIAR----ALGDVAAAQRYGAQLQ 230
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 19/101 (18%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741
G + + G +D + + + + E D + NLA Y+ G + A++ Y+ L
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELDP-----DNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782
+A+ L +Y+ ++++ ++ +A+ L P+
Sbjct: 62 E--LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K + A +YY KA +D + G+ E+A ++ LE D DN A
Sbjct: 12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ G+Y ++LE Y++AL++ P+
Sbjct: 72 YNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-07
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L +G YKLG +A + +++AL+LDP+N +A LA + + + +E ++A
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK---YEEALEDYEKA 60
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297
E+ P A A L ++ G++ + E AL +
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-06
Identities = 62/378 (16%), Positives = 114/378 (30%), Gaps = 74/378 (19%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALG 90
+ A + WL++ R G + + ++ +A+
Sbjct: 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKK----------------LLALQPDSA 635
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L + + A +A + +G QLLLA E A
Sbjct: 636 LALLLLADAYAVMKNYAK----AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
Query: 151 FKIVLEADRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
K L+ + + Y +++ Y++AL+ PS AI+L L
Sbjct: 692 AKS-LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRAL---- 746
Query: 210 LGQLGKARQAFQRA---LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
G +A + L+ P + ALA + L + K ++ Q + P
Sbjct: 747 -LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD---KAIKHYQTVVKKAPD 802
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
A+ LN NLA Y + +A
Sbjct: 803 NAVVLN-------------------------------------NLAWLYL-ELKDPRALE 824
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
Y ++K + G + ++ G+ AL K + I P+ L
Sbjct: 825 YAERALKLAPNIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881
Query: 387 VQLGQIEKAQELLRKAAK 404
+ G+ +A++ L K
Sbjct: 882 LATGRKAEARKELDKLLN 899
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-06
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG-QIEKAQELLRKAA 403
LG KLGD+ A+ +EK LE+ PDN E L Y++LG E+A E L KA
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 404 KIDP 407
++DP
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQ 218
DN AL F G Y +++E Y++AL++ P + L KLG +A +
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA-EAYYNLALAYLKLGKDYEEALE 59
Query: 219 AFQRALQLDP 228
++AL+LDP
Sbjct: 60 DLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 68/380 (17%), Positives = 127/380 (33%), Gaps = 44/380 (11%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+++A+ + L+ P++ E LG IY+ LG A++ LRKA + Q
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L + + +TLL G E+L G+ + G+ E A +S++ AL
Sbjct: 96 LARAYLLQGKFQQVLDELPGKTLLDDEGA---AELLALRGLAYLGLGQLELAQKSYEQAL 152
Query: 476 GDGI---------------------WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514
L+D + A +L+ + E
Sbjct: 153 AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELA 212
Query: 515 ----GNHVELPWNKVTVLFNLAR-LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 569
+ L N + VL LA L+E A L+ + YL+ A +
Sbjct: 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVD 271
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629
+ N + + E + +ALK +Y AL + G E + + +A +
Sbjct: 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQ 330
Query: 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG 689
A L + +L +++A + + + A + G G
Sbjct: 331 ARRLLA-------------SIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG 377
Query: 690 QFDVSKDLFTQVQEAASGSV 709
F+ + + + E +
Sbjct: 378 DFEKAAEYLAKATELDPENA 397
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL 774
+ +NL ++Y+ G++ A++ Y+ L +A LA +Y+ ++++ +
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 775 RAIHLAPSNYTLRFDAGVAMQK 796
+A+ L P N ++ G+A K
Sbjct: 59 KALELDPDNAKAYYNLGLAYYK 80
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-06
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
L V +LGD+ AL EK LE+ P+ L L +Y+ LG ++A E
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 398 LLRKAAKIDPR 408
L KA +
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 3/151 (1%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ A + KA D + + GE + A +++ L +N L
Sbjct: 51 YAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110
Query: 170 CVEFNRGRYSDSLEFYKRALQ--VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+GR ++++ ++RAL + + +GLC K GQ +A + +RAL+LD
Sbjct: 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTL-ENLGLCALKAGQFDQAEEYLKRALELD 169
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
P+ AL+ LA + +A + A R +E+ Q
Sbjct: 170 PQFPPALLELARLHYKAGDYAPARLYLERYQ 200
|
Length = 250 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L NL L ++ D A Y L D DAY LAA + ++E +AL
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+++ A LG K + +A E + A
Sbjct: 62 ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94
|
Length = 100 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 2e-05
Identities = 30/128 (23%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 861 LDAAKIHREAAEREEQQNRQRQEAARQAA----LAEEARRKAEEQKKYLLEKRKLEDEQK 916
+AA+ EAAE+++++ +++ +AA++ A A+EA++KAEE KK E +K +K
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 917 RLRQQEEHFQRVK--EQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 974
+ + ++ + K ++ + +K+ + ++ +E +E+ ++K + +K D++ +
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Query: 975 HYETEYAE 982
E + A+
Sbjct: 1479 AEEAKKAD 1486
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 2e-05
Identities = 35/149 (23%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 855 EYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDE 914
E K +AAK EAA E + ++ EAA + EEA++KA+ KK EK+K ++
Sbjct: 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK--EEAKKKADAAKKKAEEKKKADE- 1395
Query: 915 QKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 974
+++ E ++ ++ + + A K+ + ++ +E +++ ++K + +K D++ +
Sbjct: 1396 ---AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Query: 975 HYETEYAEADMMDYREEPEDEDASMNYRE 1003
E + AE E + ++A E
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
Length = 2084 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (111), Expect = 2e-05
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 5/259 (1%)
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKL 210
+ + + + + L + G +++LE + AL++ P+ A L + L KL
Sbjct: 13 EALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKL 72
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G+L +A + ++AL+L+ A AL + L + +E +++A + P +A
Sbjct: 73 GRLEEALELLEKALELELLPNLAE-ALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131
Query: 271 LNYLANHFFF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329
LA + G + +L E AL + + + L + G YE+A
Sbjct: 132 EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191
Query: 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389
++K P + LG + LKLG + AL +EK LE+ PDN E L L + ++L
Sbjct: 192 KALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249
Query: 390 GQIEKAQELLRKAAKIDPR 408
G+ E+A E L KA ++DP
Sbjct: 250 GRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK----PHEFIFPYYGLGQVQLKLGD 357
P + + NLA GDY++A +++ + E L ++ L LGD
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 358 FRSALTNFEKVLEIYPD 374
+ AL EK L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.8 bits (109), Expect = 3e-05
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 2/245 (0%)
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
+L AL + A+ LG+L +A + + AL+L P + A +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296
L + + + + +E +++A E+ +A L E L A
Sbjct: 63 LLLAL-ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356
+ + + GDYE+A Y +++ + +E LG + LG
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 357 DFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ AL EK L++ PD+ E L LG +Y++LG+ E+A E KA ++DP +A+A +
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241
Query: 416 LGELL 420
L LL
Sbjct: 242 LALLL 246
|
Length = 291 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 3e-05
Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 48/235 (20%)
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
+ + ++ E+ P + A+ G E+ + AL + YY+ A+
Sbjct: 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQ 407
Query: 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
+ KG++ +AG Y K I+ +FIF + LG Q K G S++ F + + +P
Sbjct: 408 LHFIKGEFAQAGKDYQ---KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464
Query: 374 DNCETLKALGHIYVQLGQIEKAQE------------------------------------ 397
+ + G + + + ++A E
Sbjct: 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524
Query: 398 -----LLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEV 446
L KA IDP A + +LL+ D AL F+ A L + GE V
Sbjct: 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS--DTGAALDA 431
DN E LK LG+ +LG ++A E KA ++DP +A+A+ +L + D AL+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 432 FKTARTL 438
+ A L
Sbjct: 61 LEKALEL 67
|
Length = 69 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLL 439
L Y++ G +E A+E L KA + DP D A++ L + A D+F+ A TL
Sbjct: 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
Query: 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477
G +VLNN G ++G++E A Q F+ A+ D
Sbjct: 96 PNNG-----DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 5e-05
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 10/221 (4%)
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF---EIYPYCAMALNYLANHFFFT 281
+LD E + L + ++ + ++A ++ A+ALN
Sbjct: 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344
Query: 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF 341
G+H +E L + + ++ P + SY A GD +KA + ++K ++ +
Sbjct: 345 GKH--LEALADLSKSI-ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401
Query: 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401
YY Q+ G+F A +++K +++ PD + LG + G I + R+
Sbjct: 402 ---YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR 458
Query: 402 AAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTARTLLKK 441
K P + GELL+ + A++ F TA L K+
Sbjct: 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
L A G Y ++L + AL +P A L +G + G+L +A + AL
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEA-LLLLGEALLRQGRLAEAAALLRAALA 59
Query: 226 LDPEN 230
DP++
Sbjct: 60 ADPDD 64
|
Length = 65 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 1e-04
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + L+ GD+ AL E L YP E L LG ++ G++ +A LLR A
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 406 DPRDA 410
DP D
Sbjct: 61 DPDDP 65
|
Length = 65 |
| >gnl|CDD|224643 COG1729, COG1729, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 291 TETALAVTNHGPTKSH--SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--YY 346
T + +V G S YN A + GDY +A + A +K P+ P YY
Sbjct: 125 TPGSASVDGDGAPVSPATKLYNAALDLYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYY 182
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQIEKAQELLRKAA 403
LG+ GD+ A F +V++ YP + + L LG +LG ++A L++
Sbjct: 183 WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVI 242
Query: 404 KIDPRDAQA 412
K P A
Sbjct: 243 KRYPGTDAA 251
|
Length = 262 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 37/178 (20%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 847 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 906
++ VE K K E ++ E++N+ + AA +A AEE ++KAEE KK
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 907 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGH--SEKRRRKGGK 964
+++K + K+ E + E+ + K++ +E +E+ +++ +
Sbjct: 1686 DEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
Query: 965 RRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDR 1022
+KK + ++ E E + + EE + E+ I + D++D+ D+
Sbjct: 1742 DKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
Length = 2084 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (103), Expect = 2e-04
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 8/190 (4%)
Query: 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG-QL 137
+ + +L L LG + + EE A + KA +D
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEE----ALELLEKALALDPDPDLAEALLALGA 139
Query: 138 LLAKGEVEQASSAFKIVLEAD---RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L G+ E+A ++ LE D + ALL + GRY ++LE ++AL+++P
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L +GL KLG+ +A + +++AL+LDP+N EAL LA++ L+ + +
Sbjct: 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
Query: 255 EKMQRAFEIY 264
EK
Sbjct: 260 EKALELDPDL 269
|
Length = 291 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + ++KA +++ +P + + QL KGE QA ++ ++ D D + + + +
Sbjct: 384 AEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443
Query: 173 FNRGRYSDSLEFYKRALQVHPSCP 196
+ G + S+ ++R + P P
Sbjct: 444 YKEGSIASSMATFRRCKKNFPEAP 467
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 41/230 (17%), Positives = 72/230 (31%), Gaps = 27/230 (11%)
Query: 863 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 922
AA R+ +Q AA+ A A + E Q R R++
Sbjct: 78 RRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEA----ASAPEAAQARERRER 133
Query: 923 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAE 982
R ++ + + D E E+R + + ++D+ + AE
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE-------AE 186
Query: 983 ADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSIT 1042
REE + + R+ Q + +++ + DR D
Sbjct: 187 RGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARG-----D 241
Query: 1043 AARRRRALSESDDDEPF-----------ERQLRDNTDELQDSDGELREND 1081
R R + DD E +R+ R D + + ELRE+D
Sbjct: 242 DNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDD 291
|
Length = 672 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 3e-04
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA-EQWQDCK 770
+ NL + F G++ A++ Y+ L +A+ LA + + + +++
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALE--LDPDNAEAYYNLALAYLKLGKDYEEAL 58
Query: 771 KSLLRAIHLAP 781
+ L +A+ L P
Sbjct: 59 EDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 3e-04
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 863 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQK--RLRQ 920
A + R+ ++ R A RQAA+ E RKA+E KK EK+K ++ +K ++
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK-AEEKKKADEAKKAEEKKK 1303
Query: 921 QEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYET-- 978
+E ++ +E ++ K E + D +E+ ++ + + +++ E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 979 EYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEEN 1018
E AEA E + DA+ E + ++ EE+
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
Length = 2084 |
| >gnl|CDD|234017 TIGR02794, tolA_full, TolA protein | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 865 KIHREAAEREEQQ--NRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 922
K+ ++A E E+Q+ + RQ+ Q A AE+A ++AE+ K EK+K +E K +Q
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAK--AKQA 129
Query: 923 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKD 969
+ E + ++++E + +E +++ ++K +
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAE 176
|
TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346 |
| >gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FP--------YYGLGQVQLKLGD 357
YY+ A GDY A I F+ +P +Y LG+ GD
Sbjct: 3 YYDAALLVLKAGDYADA----------IQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGD 52
Query: 358 FRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F V++ YP + + L LG +LG EKA+ L++ K P + A
Sbjct: 53 YADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 110
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117 |
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-04
Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 4/152 (2%)
Query: 868 REAAEREEQQNRQRQEAARQA-ALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQ 926
ER E R+ R+ L E+ +E+ + E +LE+ + L + E
Sbjct: 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
Query: 927 RVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMM 986
+ + R E +E+ E +R + + ++ + + E ++
Sbjct: 880 NERAS--LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR 937
Query: 987 -DYREEPEDEDASMNYREPIGQMNDQDDDVEE 1017
D +E E+ S+ E N +DD EE
Sbjct: 938 IDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 7e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLG + AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L G+ ++A +A + L ALL +GR +++ + AL P
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62
Query: 194 S 194
Sbjct: 63 D 63
|
Length = 65 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQI--EKAQELLRKAAK 404
LG+ + LG AL + L + DN E L L Q GQ KA+ LLR+A
Sbjct: 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221
Query: 405 IDPRDAQA 412
+DP + +A
Sbjct: 222 LDPANIRA 229
|
Length = 287 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.001
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 868 REAAEREEQQNRQRQEAARQAA-----LAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 922
+E E+EEQ +R+E R+AA EEARR+ EE+ + EK K + E++ ++QE
Sbjct: 44 QERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQE 103
Query: 923 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 966
E + K++ + A + ER + ++ ++ R K+R
Sbjct: 104 EQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.001
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ +L +R L + P P R GL +LG A + L+L P+ +
Sbjct: 6 LREEDFERALAVVERLLLLAPDDPYERRDR-GLLYAQLGCFQAALADLEYFLELCPDAPD 64
Query: 233 ALVALAVM 240
A +
Sbjct: 65 AERIREQL 72
|
Length = 73 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
++A E Y + + N A + G+++ + + + + +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA-----LELDPDNAKA 70
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFY 745
+ NL Y+ G + A++ Y+ L
Sbjct: 71 YYNLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFE 366
NL + GDY++A Y +++ E YY L LKLG D+ AL + E
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA---YYNLALAYLKLGKDYEEALEDLE 62
Query: 367 KVLEIYP 373
K LE+ P
Sbjct: 63 KALELDP 69
|
Length = 69 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (98), Expect = 0.002
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 863 AAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQE 922
A ++ ++ AE +++ ++ AEEA+++AEE KK E +K E+E+K++ +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Query: 923 EHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKR 958
+ ++ E+ R A E E D+ +K+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
Length = 2084 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+G KLG+ +A + +++AL+L+P N
Sbjct: 6 NLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 143 EVEQASSAFKIVLEADRDNVP--ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
E+E + + L+ + + LLG+A GR SD+L Y+ AL++ P I
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRA--YMALGRASDALLAYRNALRLAGDNP-EIL 193
Query: 201 LGIGLCRYKL--GQLG-KARQAFQRALQLDPENVEALVALA 238
LG+ Y Q+ KAR ++AL LDP N+ AL LA
Sbjct: 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234
|
Length = 287 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
Y LG LKLGD+ AL +EK LE+ P+N
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 837 ASNLHLHGFDEKKINT-HVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEAR 895
A LH + KK T K R AAERE NR+ ++ A AR
Sbjct: 322 APELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAERE--INREARQERAAAMARARAR 379
Query: 896 RKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSEND 948
R A + KK L +E + EE + ++T A RE S+ D
Sbjct: 380 RAAVKAKKKGL-IDASPNEDT-PSENEESKGSPPQV-EATTTAEPNREPSQED 429
|
Length = 429 |
| >gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Query: 847 EKKINTHVEY-CKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYL 905
++IN E +++L+ A ++ AE+ +++ R+R E+ + L +A+ +AE +K+ +
Sbjct: 8 IQEINREAEQKIEYILEEA---QKEAEKIKEEARKRAESKAEWIL-RKAKTQAELEKQRI 63
Query: 906 LEKRKLEDEQKRLRQQEEHFQRVKEQWRS 934
+ KLE +KRL QEE V E R
Sbjct: 64 IANAKLEVRRKRLAVQEELISEVLEAVRE 92
|
Length = 198 |
| >gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
YG G + AL + ++ PDN L+ G I ++ + ++A E L+KA +
Sbjct: 310 YGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL 369
Query: 406 DPRDAQAFIDLGELLI 421
DP ++L + L+
Sbjct: 370 DPNSPLLQLNLAQALL 385
|
Length = 484 |
| >gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/121 (26%), Positives = 46/121 (38%), Gaps = 9/121 (7%)
Query: 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-ALQV 191
+ + L+ + +A+ K L+A +N A L A G + LQ
Sbjct: 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198
Query: 192 HPSCPGAIRLGIGLCRYKLGQLGKAR--QAFQRALQLDPENVEALVALAVMDLQA--NEA 247
++ I L L Q Q QR L DP++VEA +ALA NEA
Sbjct: 199 QDKAAHGLQAQIEL----LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEA 254
Query: 248 A 248
A
Sbjct: 255 A 255
|
Length = 304 |
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 18/241 (7%)
Query: 870 AAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRL----------- 918
A+ + ++ + +E ++ E+ ++K + +++ K K E ++KR
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Query: 919 ----RQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRS 974
R +EE +R + + S P +++ N E EK+R+ + K
Sbjct: 154 VEEPRDREEEKKRERVR-AKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 975 HYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1034
E E D RE R+ +++ A+
Sbjct: 213 VNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSK 272
Query: 1035 DEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDS--DGELRENDHKSNGGAALDD 1092
T+ R A S P + ++ LQD+ G++ N + +D
Sbjct: 273 RTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDED 332
Query: 1093 D 1093
D
Sbjct: 333 D 333
|
This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506 |
| >gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
A L ++ D A + L + D RL + + L I+ + LK +
Sbjct: 269 YAERLIRLGDHDEAQEIIEDALKRQWD--PRLCRLIPRLRPGDPEPL-IKAAEKWLKQHP 325
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
+ P LS LG L LKN W KA E AA YA L+
Sbjct: 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368
|
Length = 400 |
| >gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKID 406
LG + L GD+ +A+ E+V E P+ E L L Y LG + E LR+A +
Sbjct: 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKK 441
P A + L +LL + A A R L++
Sbjct: 280 PG-ADLLLALAQLLEEQEGPEA--AQALLREQLRR 311
|
Length = 389 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV-------HPSCPGAIRLGIGLCRYKLGQLGKA 216
AL A V G Y ++LE ++AL++ HP + LG +A
Sbjct: 7 ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPET-ARALNNLARLYLALGDYDEA 65
Query: 217 RQAFQRALQLDPE 229
+ ++AL L
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.004
Identities = 28/128 (21%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 862 DAAKIHREAAEREEQQNRQRQEAARQA---ALAEEARRKAEEQKKYLLEKRKLEDEQKRL 918
DAAK E ++ ++ ++ +E ++A A A++KA+E KK EK+K ++ +K+
Sbjct: 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA 1440
Query: 919 ---RQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSH 975
++ +E ++ +E ++ K E + D+ + E ++ K++ ++ ++
Sbjct: 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1500
Query: 976 YETEYAEA 983
+ AEA
Sbjct: 1501 EAKKAAEA 1508
|
Length = 2084 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.004
Identities = 31/153 (20%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 869 EAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRV 928
+ A+++ ++ ++ EA ++A EEA++KA+E KK K+K ++ +K ++ +
Sbjct: 1473 DEAKKKAEEAKKADEAKKKA---EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Query: 929 KEQWRSSTPASKRRERSENDD----DEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEAD 984
E+ + + A K E+ + D+ +E+ +E++++ ++ ++ + + + E A+
Sbjct: 1530 AEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK- 1588
Query: 985 MMDYREEPEDEDASMNYREPIGQMNDQDDDVEE 1017
EE E+ Y E ++ EE
Sbjct: 1589 ----AEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
|
Length = 2084 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 60/332 (18%), Positives = 114/332 (34%), Gaps = 38/332 (11%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++ Y +A++ P C LG K + AL+LDP+ +
Sbjct: 138 YRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSK 195
Query: 233 ALV------------ALAVMDL---------------QANEAAGIRKGMEKMQRAFEIYP 265
AL A A++DL QA E + K + E P
Sbjct: 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP 255
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
++ ++ N+ L ++ G + S + E A
Sbjct: 256 ENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
+ A E I G + G AL + K +E+ P ++ +
Sbjct: 316 AFEKALDLGKLGEKEAI-ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE 445
++LG +KA+E KA K++ D + +L F A +K+ +
Sbjct: 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF------IKGEFAQAGKDYQKSIDL 428
Query: 446 VPIEVLNNI--GVIHFEKGEFESAHQSFKDAL 475
P + ++I GV +++G S+ +F+
Sbjct: 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 868 REAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQR 927
+E ER EQ+ + R E A E R + EE+ + E+R E E+K R+ EE ++
Sbjct: 41 QEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQ 100
Query: 928 VKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 961
+E+ K++E +E E + R+
Sbjct: 101 EQEE---QERIQKQKEEAEARAREEAERMRLERE 131
|
The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent. Length = 171 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+EK LE+ P+N E L + + LGQ ++A +
Sbjct: 2 YEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1093 | |||
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 100.0 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 100.0 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.97 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.97 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.95 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.95 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.95 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.94 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.94 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.93 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.91 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.91 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.91 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.91 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.88 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.86 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.83 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.83 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.8 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.78 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.76 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.72 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.71 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.7 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.7 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.7 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.7 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.69 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.67 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.61 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.6 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.59 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.39 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.39 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.38 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.37 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.3 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.28 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 99.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.04 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 99.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.0 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.97 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.95 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.93 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.91 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.83 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.83 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.76 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.73 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.72 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.7 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.7 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.68 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.68 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.68 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.68 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.67 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.65 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.65 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.62 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.61 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.6 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.59 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.56 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.55 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.55 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.53 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.51 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.5 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.47 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.47 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.41 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.4 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 98.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.33 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.32 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.29 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.25 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.23 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.22 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.19 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.17 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.12 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.09 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.08 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.04 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 98.01 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.96 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.92 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.85 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.83 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 97.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.76 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.71 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.66 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.65 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.65 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.63 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.62 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.59 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.59 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.55 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.52 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.45 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.36 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.33 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.24 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.22 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.22 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.2 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.13 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.13 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.12 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 97.12 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.11 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.11 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.09 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.01 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.99 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.99 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.93 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.9 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.88 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.84 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.82 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.82 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.81 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.75 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.67 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.66 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.65 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.64 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.56 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.51 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.48 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.31 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.27 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.22 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.18 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.15 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.09 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.06 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.03 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 95.97 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.95 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.94 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.91 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 95.9 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.82 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.8 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.75 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.69 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 95.64 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.59 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.5 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 95.43 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.42 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.41 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.4 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.13 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.04 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.02 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.88 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.84 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.82 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.76 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.76 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.43 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.37 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 94.18 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.99 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.97 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 93.88 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 93.87 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.79 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.73 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.64 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.52 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.47 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 93.39 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.33 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 93.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.28 | |
| PF08492 | 59 | SRP72: SRP72 RNA-binding domain; InterPro: IPR0136 | 93.06 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 92.77 | |
| KOG1144 | 1064 | consensus Translation initiation factor 5B (eIF-5B | 92.76 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.61 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.58 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 92.34 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.22 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 92.22 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 92.18 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 91.99 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.89 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 91.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 91.17 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 90.96 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 90.81 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.46 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 90.4 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 90.18 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 89.91 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 89.91 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 89.83 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 89.65 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 89.42 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.11 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.09 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 88.99 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 88.63 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 88.22 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 88.15 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.93 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.46 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 87.37 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 87.19 | |
| KOG1150 | 250 | consensus Predicted molecular chaperone (DnaJ supe | 86.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.7 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 86.44 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 86.33 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.29 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 86.23 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.12 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.85 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 85.84 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 85.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.64 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.46 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 85.36 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.25 | |
| PF12854 | 34 | PPR_1: PPR repeat | 84.95 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 84.16 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.15 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.72 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.41 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 83.06 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 82.99 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.52 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 82.52 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 82.45 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 82.19 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.11 |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-116 Score=978.49 Aligned_cols=999 Identities=40% Similarity=0.646 Sum_probs=892.0
Q ss_pred CceeeeccCCCCceEEEeCCCCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001357 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1093)
Q Consensus 1 ~~~~~ip~~~~~~~v~~~~~~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~ 80 (1093)
|+||+|||++++|||+||+++|| |++||++||+.+.+++++|+.+|.+||++|+.++|+.||+.++ .+....|.++..
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~-~~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGL-IDANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhh-hcccchhcchHH
Confidence 57999999999999999999999 9999999999999999999999999999999999999999998 345567889999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al~~~ 158 (1093)
+.+.+++.||.+|...+........++..+..|+.+|+.+-.++......|+..+..++..|.. +.|...|..++...
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988899999999999999999999999999999999999988876 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|+|+.++++.|++.+..|+|..|+.+|..++..+|...+++++++|.|++++|+.+.|+..|.++++++|.++.+++.||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1093)
.+.....+...+..++..+.+++..+|.+|.+++.|+..|+..|+|..+..++..++..+...+..++++|++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999889999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1093)
|+|++|..+|..+++. .+..++.+++++|++|+..|+++.|+.+|+++++..|++.+++..+|.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999886 6789
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 395 A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
|..++.+++...|.+..+|+.++.++..++...++.+|..++.++...+...++++++++|..++..|++..|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999888888889999999998888887899999999999999999999999999999
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001357 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1093)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1093)
+..+...... .. ......++.|++|+++...++++.|...|..+++.
T Consensus 479 ~~~~~~~~n~--------------------------------de-~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVANK--------------------------------DE-GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhcCc--------------------------------cc-cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8852100000 00 01234778999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHH
Q 001357 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 633 (1093)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~ 633 (1093)
+|.++++|++++.+....++..+|..+++.++..+..+|.+|..+|.+|++..+|..|...|..+++.... +|+|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988875433 59999999
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1093)
|||+ |+...+...+++..+.+.+++|+++|.++|..+|.|.++.+++|++++..|++.+|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9999 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 793 (1093)
+++|+|+||||+.+|+|..|+++|+.|+++|...+++.++.+||++|+..|.+.+|+.++.+++++.|.|+.+.||+|.+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHhhhchhhHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001357 794 MQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER 873 (1093)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 873 (1093)
+.+.+.+.++..++++++|.. ++.+|+.|+++|.+|+..+.. +++++.+.+++++|++|+++++.|..++++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~-----a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~ 831 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLE-----AVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQE 831 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHH-----HHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999 999999999999999998754 789999999999999999999999988775
Q ss_pred H-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChhh-hhhhccCCC
Q 001357 874 E-EQQNRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSEND 948 (1093)
Q Consensus 874 ~-e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~ 948 (1093)
+ |++.++|| +.+++.++.++++|.++|++..+++.++++++.+...+..+.+.+-+++|+++.... |+|..+
T Consensus 832 e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~~~~~--- 908 (1018)
T KOG2002|consen 832 EDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKRGDDS--- 908 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCCCCcC---
Confidence 4 44444555 455666677888888888887777777777777766666778888899998776654 333222
Q ss_pred CccccccccccccCCcccccccCcCc-cccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHh
Q 001357 949 DDEVGHSEKRRRKGGKRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAA 1025 (1093)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 1025 (1093)
++..++||+||+|||+++++. ++..+.+|...+++...+..+..+..+..+|++. ...+.+++++.+. ..+.
T Consensus 909 -----~~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~ 983 (1018)
T KOG2002|consen 909 -----DSDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREAS 983 (1018)
T ss_pred -----cccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchh
Confidence 244455556655555333332 2334445667777777777777777666444332 3344444555555 7888
Q ss_pred cCCCCC-CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001357 1026 AGLEDS-DVDDEMAPSITAARRRRALSESDDDEPF 1059 (1093)
Q Consensus 1026 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1093)
++++++ |+|.|..+++. .||++++|.|||.+++
T Consensus 984 ~~~~~~~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 984 EESDRPIESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred hccCCccccccccCcccc-cccchhhccccccccc
Confidence 888887 77777888888 9999999999987653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=526.79 Aligned_cols=699 Identities=21% Similarity=0.240 Sum_probs=513.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHH
Q 001357 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (1093)
Q Consensus 32 ~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~ 111 (1093)
++...+.+...|+.+|..++..|++++|+.++++++...+. ...++..++.++...|...
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~----------- 210 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG---------NVDALLLKGDLLLSLGNIE----------- 210 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHhcCCHH-----------
Confidence 34455566777888888888888888888888887654332 2345666777777766655
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
+|+..|.+++..+|.++.+++.++.+++..|++++|...|+.++...|.++.+++..|.+++..|++++|+..|++++..
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
+|.. ...++.+|.++..+|+++.|+..|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 291 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 366 (899)
T TIGR02917 291 APEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAAL 366 (899)
T ss_pred CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHH
Confidence 6655 33445556666666666666666666666666555555555555555555 5555555555555555555555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----------------
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---------------- 335 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 335 (1093)
..++.++...|++++|..++.+++... |.....++.+|.++...|++++|+..|..++...
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 555555555555555555555554332 3333444444444444444444444444333211
Q ss_pred ---------------CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 336 ---------------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 336 ---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
...|....++..+|.++...|++++|+.+|.+++..+|.+..++..++.++...|++++|+..|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 03456667788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
+++...|.+..++..++.++ ..|++++|+.++.+++...+. ....+..++.++...|++++|+.++++++...+
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888 888888888888888776443 356777788888888888888888888876432
Q ss_pred hhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 001357 480 WLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 555 (1093)
.. ............. ...+..+..+.. ..|.++.++..++.++...|++++|...|.+++..+
T Consensus 599 ~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 599 DS-------PEAWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 10 0011111111111 122333333332 456778888999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
|++..++..++.++...|++++|..+++.+....|.++.++..+|.++...|++++|+..|.+++...|.. ..+..++
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~ 743 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLH 743 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887764 4556678
Q ss_pred hHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchh
Q 001357 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1093)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1093)
.+ |... |++++|+..+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| .++.
T Consensus 744 ~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~ 805 (899)
T TIGR02917 744 RA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAV 805 (899)
T ss_pred HH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHH
Confidence 77 7777 9999999999999999999999999999999999999999999999999887 7889
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 795 (1093)
++.++|+++...|+ .+|+.+|++++.. .+.++.++..+|.+++..|++++|..+|++++...|.++.++++++.++.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 99999999999999 8899999999987 56678888999999999999999999999999999999999999988865
Q ss_pred HHH
Q 001357 796 KFS 798 (1093)
Q Consensus 796 ~~~ 798 (1093)
..+
T Consensus 883 ~~g 885 (899)
T TIGR02917 883 ATG 885 (899)
T ss_pred HcC
Confidence 543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=519.55 Aligned_cols=717 Identities=21% Similarity=0.208 Sum_probs=578.6
Q ss_pred CCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhh-------------------------
Q 001357 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYY------------------------- 75 (1093)
Q Consensus 21 ~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~------------------------- 75 (1093)
+...-...+...+...+.....|+.+|.+|+.+|++++|+..+++++...+....
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~ 116 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhccc
Confidence 4444455666777788889999999999999999999999999998765442100
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 76 -ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154 (1093)
Q Consensus 76 -~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 154 (1093)
....+....++..+|.+|...| ++.+|...|++++..+|.++.+++.+|.+++..|++++|+..++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 117 TLLDDEGAAELLALRGLAYLGLG-----------QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred ccCCchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0011122333444444444444 4458999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
+..+|.+..++..+|.+++..|++++|+..|++++..+|.+ ..+++.++.++...|++++|...+.+++...|.++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 264 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH 264 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999999999999999999999999988 67788899999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 314 (1093)
+..+.++...|+ +.+|+..|.+++..+|.+..++..++.+++..|++++|..++..++... |....++..++.+
T Consensus 265 ~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~ 338 (899)
T TIGR02917 265 YLKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASI 338 (899)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 888998888888 9999999999999999988888889999999999999999999988654 5556788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001357 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394 (1093)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 394 (1093)
+...|++++|+..+..++. ..|.....+..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++
T Consensus 339 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 9999999999999998887 5566777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (1093)
Q Consensus 395 A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 473 (1093)
|+..|.+++...|........++..+ ..|++++|+..+.......+. .+.+++.+|.++...|++++|+.+|.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-----NASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999988888888888888 889999999988887664332 467889999999999999999999999
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 474 ALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (1093)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (1093)
++...+.. ............. ......+..+.. ..|.+..++..++.++...|++++|..++.
T Consensus 491 a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 491 ALSIEPDF-------FPAAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHhhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 98754311 1111111111111 123333444333 456677788888888888888888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChH
Q 001357 550 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629 (1093)
Q Consensus 550 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~ 629 (1093)
+++..+|.+...+..++.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..|++++...|. +..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 636 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SAL 636 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888877665 566
Q ss_pred HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC
Q 001357 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (1093)
Q Consensus 630 ~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 709 (1093)
++..++.+ |... |++++|+..|++++..+|++..+++.++.++...|++++|+.++..+.+..|
T Consensus 637 ~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 700 (899)
T TIGR02917 637 ALLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP--- 700 (899)
T ss_pred HHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---
Confidence 67777777 7777 8888888888888888888888888888888888888888888888887776
Q ss_pred CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhH
Q 001357 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1093)
Q Consensus 710 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 789 (1093)
..+.++..+|.++...|++++|+..|++++...|.+ .++..++.++...|++.+|...+++++...|+++.++++
T Consensus 701 --~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 701 --KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred --CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 567778888888888888888888888888764322 667778888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 001357 790 AGVAMQKFS 798 (1093)
Q Consensus 790 la~~~~~~~ 798 (1093)
+|.++...+
T Consensus 776 la~~~~~~g 784 (899)
T TIGR02917 776 LAELYLAQK 784 (899)
T ss_pred HHHHHHHCc
Confidence 887765443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=406.90 Aligned_cols=583 Identities=17% Similarity=0.165 Sum_probs=512.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
++.|.+.|.-+++..|.+...+++.|.+.+..|+|..|+.+|..++..+|.. +...+++|.|+.++|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999876 567789999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
++++|.+ ..++..||.+-.... .+..++..+.++...+|.||.++..|+..++..|+ +..+..+...++...-
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 777788887766655 47789999999999999999999999999999999 9999999999887764
Q ss_pred C---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001357 266 Y---CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1093)
Q Consensus 266 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1093)
. -...++.+|..|..+|+|++|..+|-.++...+.+ ....++.+|..|...|+++.|..+|++++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 3 34569999999999999999999999999766443 357789999999999999999999999998 667888
Q ss_pred hhHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 001357 343 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 413 (1093)
Q Consensus 343 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~ 413 (1093)
.....+|.+|...+ ..+.|..++.+++...|.+..+|..++.++....-+.. +.+|..++.. .+--+..+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 88899999998886 67899999999999999999999999999887655544 9999988843 35568899
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccc
Q 001357 414 IDLGELL-ISSDTGAALDAFKTARTLLKK-A----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (1093)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (1093)
.++|.++ ..|++..|...|..+...... . +......+.+|++.++-..++++.|...|...+.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 999999999999999887331 1 1123356789999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001357 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567 (1093)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 567 (1093)
.+|..+..+..+|......+...+|..++..++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 568899999999988888899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcC--CChhHHHHhhhhhhcc------------cchHHHHHHHHHhhhcCCCCChHHHHH
Q 001357 568 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 633 (1093)
Q Consensus 568 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~l~~~~~~d~~~~~~ 633 (1093)
++.....+..|..-|...+.... .++.+...||++++.. +.+++|++.|.+++...|. +.|+-..
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999887777766443 3455667788876653 4588999999999999988 8899999
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1093)
+|.+ +... |++..|+.+|.++.+...++..+|.++|.||+.+|+|..|+++|+.++...-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 9988 7777 999999999999999888889999999999999999999999999999886322 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhc
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 764 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g 764 (1093)
+.++..||.+++..|.+.+|...+..++.. .+.++.+.+++|.+..+.+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHH
Confidence 899999999999999999999999999998 5667788888888877643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=443.35 Aligned_cols=652 Identities=14% Similarity=0.119 Sum_probs=532.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHH
Q 001357 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1093)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~ 116 (1093)
..+....+..++.+..+++.+.|.+.|.+++..+|+ .+.++..++.+++..|+.. +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---------~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---------NPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 446677899999999999999999999999877653 4667888889998888877 99999
Q ss_pred HHHHHhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001357 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1093)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1093)
++++++++|+++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|+++
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 56678899999999999999999999888764 2222333334569999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-------------
Q 001357 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1093)
+|+..|++++..+|.+ ..+++.+|.+++..|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987655432221111000001111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHH
Q 001357 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1093)
Q Consensus 247 ----~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1093)
...+..|...+.+.....++.......++..+...|++++|+..+++++... |.++.+++.+|.+|...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 0112334444443333322222233456888999999999999999999764 677899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1093)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1093)
+|+.+|.+++...+..+.. ......+|.++...|++++|+.+|++++..+|.+..++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999854433221 11234568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCCHHHH
Q 001357 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESA 467 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A 467 (1093)
+++|+..|++++..+|++..++..++.++..+++++|+.++..+....+.. ........+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999995568899998887643322110 0011234567889999999999999
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001357 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (1093)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (1093)
+..|++++. ..|.++.+++.+|.+|...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 5678889999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC----------hhHHHHhhhhhhcccchHHHHHHHH
Q 001357 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
|++++..+|.++..++.++..+...+++++|+..++++....... ......++..+...|++++|+..+.
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999988754322111 1123467888999999999999887
Q ss_pred HhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHH
Q 001357 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (1093)
Q Consensus 618 ~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 697 (1093)
..|. +...++.++.+ |... |++++|+..|++++..+|+++.++++++.+|...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444 55677889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHhhccHHHHHHHH
Q 001357 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 773 (1093)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~l~~la~~~~~~g~~~~A~~~~ 773 (1093)
|++++...| +++.++..+|.++...|++++|+.+|++++...+..+ +..++..+|.++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998877 7788999999999999999999999999998754332 2456778899999999999999999
Q ss_pred HHHHH
Q 001357 774 LRAIH 778 (1093)
Q Consensus 774 ~~al~ 778 (1093)
++++.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99985
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=436.13 Aligned_cols=622 Identities=17% Similarity=0.088 Sum_probs=504.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+...+.++...++.+ .|.+.+.+++.++|+++.++..++.+++..|++++|...+++++..+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 344666666666666655 899999999999999999999999999999999999999999999999998
Q ss_pred HHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 163 ~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
.++ +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678889999999999999999999988873322223333444569999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC----
Q 001357 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (1093)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 302 (1093)
+|+++.++..+|.++...|+ +.+|+..+.+++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876544322211111111122222233333332222111111
Q ss_pred -------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
........+|.++...|++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111223568899999999999999999998 567788999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001357 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1093)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (1093)
+.+|++.. ....+|.++...|++++|+..|++++..+|.+..++..++.++ ..|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99987642 2234578889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccC
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (1093)
++.+.|. ...++..++.++. .+++++|+.++..+...... .+...
T Consensus 411 aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-----------------------~~~~~------ 455 (1157)
T PRK11447 411 ALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-----------------------SIDDI------ 455 (1157)
T ss_pred HHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-----------------------HHHHH------
Confidence 9988654 4677888888875 46789999888764431100 00000
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh
Q 001357 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1093)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 594 (1093)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|++++|+..+++++...|.++.
T Consensus 456 -----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 456 -----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred -----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 001123457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChH---------HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~---------~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1093)
+++.++.++...+++++|+..+.++.......... ..+.+++. +... |++++|+.+++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~ 597 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH
Confidence 99999999999999999999999865432221111 12334555 5555 99999998876
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
..|.++.++..+|.++...|++++|+..|+++++..| .++.+++++|.+|...|++++|+..|+.++..
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 6899999999999999999999999999999999998 78999999999999999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
.+.++.++..+|.++...|++++|..+|++++...|.++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 5566888999999999999999999999999999887664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=375.36 Aligned_cols=452 Identities=21% Similarity=0.246 Sum_probs=351.0
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
+........++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ...+.++|
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHH
Confidence 33444466677777777788888777777777777777777777777777777777777777777777777 66677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
.++-..|+++.|+..|+.++++.|++.++|..+|.++...|+ ...|.++|..+++++|...-+...++.++-..|..
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 777777788888888887777777777788878777777777 77777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 001357 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1093)
Q Consensus 285 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1093)
.+|...+.+++... |..+.+|.++|-++..+|+.-.|+..|++++. .+|.+..+|++||.+|...+.|+.|+.+
T Consensus 201 ~ea~~cYlkAi~~q---p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 201 EEAKACYLKAIETQ---PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred chhHHHHHHHHhhC---CceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 77777777777543 56667777888888888888888888888876 6677777888888888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC
Q 001357 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 443 (1093)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 443 (1093)
|.+++...|++..++.++|.+|+.+|..+-|+..|++++.+.|+.+.++.+++..+ ..|+..+|..+|.+++.+.+.
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-- 352 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-- 352 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc--
Confidence 88888888888888888888888888888888888888888888888888888877 778888888888888777665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCc
Q 001357 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523 (1093)
Q Consensus 444 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 523 (1093)
.+..++++|.+|...|+++.|..+|.+++. ..|.
T Consensus 353 ---hadam~NLgni~~E~~~~e~A~~ly~~al~-------------------------------------------v~p~ 386 (966)
T KOG4626|consen 353 ---HADAMNNLGNIYREQGKIEEATRLYLKALE-------------------------------------------VFPE 386 (966)
T ss_pred ---cHHHHHHHHHHHHHhccchHHHHHHHHHHh-------------------------------------------hChh
Confidence 377778888888888888888888888777 5567
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhh
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 603 (1093)
.+.+..++|.+|.++|++++|+..|+.++.+.|..++++.++|..|..+|+...|+.+|.+++.++|...+++.++|.+|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 77778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 604 ~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
-..|+..+|+..|+.++++.|+ .+.+..++.
T Consensus 467 kDsGni~~AI~sY~~aLklkPD-fpdA~cNll 497 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPD-FPDAYCNLL 497 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCC-CchhhhHHH
Confidence 8888888888888888877765 334444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=375.76 Aligned_cols=453 Identities=20% Similarity=0.274 Sum_probs=432.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.|+|.+|.+.++.+...||.+...+..++.++++..+++.....-..+++.+|...+++..+|.++...|+++.|+.+|+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
.++++.|+. .+.|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|. ..+|-.+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 88899999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHH
Q 001357 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1093)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1093)
...+|..||.++...|+...|+..|+++++.. |....+|+++|.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 99999999999999999999999999999664 77789999999999999999999999999998 6789999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (1093)
++|.+|+.+|..+-||.+|++++.+.|+.+.++.++|.++...|+..+|..+|.+++.+.|+.+++..+||.++ ..|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
+.|..+|.+++...|.. ....+++|.+|-++|++++|+.+|+.++.
T Consensus 371 e~A~~ly~~al~v~p~~-----aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEF-----AAAHNNLASIYKQQGNLDDAIMCYKEALR----------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhh-----hhhhhhHHHHHHhcccHHHHHHHHHHHHh-----------------------------
Confidence 99999999999998874 78899999999999999999999999998
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
+.|..+.++.++|.+|..+|+...|+..|.+++..+|..++++.+|+.+|...|+..+|+..|+.+
T Consensus 417 --------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 417 --------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred --------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHH
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
+++.|+.++++.++..++.-..+|..--..+.
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 99999999999999988776666554333333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=371.95 Aligned_cols=663 Identities=11% Similarity=0.003 Sum_probs=518.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1093)
...+..|..+...|++++|+..|+.++..+|. ...++..|+.+|+.+|+.. +|+..++++
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------n~~~~~~LA~~yl~~g~~~-----------~A~~~~~kA 104 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD---------NIPLTLYLAEAYRHFGHDD-----------RARLLLEDQ 104 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHH-----------HHHHHHHHH
Confidence 46788888888889999999999999887663 3667899999999999888 999999999
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHhC
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~~ 192 (1093)
+..+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+...+++. .+.+...
T Consensus 105 v~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~ 178 (987)
T PRK09782 105 LKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAAS 178 (987)
T ss_pred HhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCC
Confidence 99999988888877666 999999999999999999999999999998 666655555554 3333333
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
|.. ..+.+.++.+|..+|++++|+..+.++++..|.+...+..|+.+|... ++ +.++.++...++ .++.++
T Consensus 179 ~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk---~d~~l~ 250 (987)
T PRK09782 179 PEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF---TDPQSR 250 (987)
T ss_pred CCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc---cCHHHH
Confidence 333 556777799999999999999999999999999999999999988873 43 666666554332 788899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1093)
..++..|...|+.++|..++...-......|......+.+++..... ..|...|.+= ..++...+.+.+...
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHHH
Confidence 99999999999999999999987766666666666666666654332 2333333331 224445567777899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHH
Q 001357 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (1093)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~ 430 (1093)
+...+.+..+..+ +...|.+.. ...........+.+.++...+..+.+..|.+......++.+. ..|+..+|..
T Consensus 323 ~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 323 LLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999955533 455676664 322233334558888999999998888899999999999998 9999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc--chhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGD--GIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
.|..+... +.. ...+..+...++.+|...+. ...+..+...+-.. +.|..-..+. ....
T Consensus 398 ~~~~~~~~-~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------~~~~ 461 (987)
T PRK09782 398 LLLQRYPF-QGD-ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI--------------ADNC 461 (987)
T ss_pred HHHHhcCC-Ccc-cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh--------------hhhH
Confidence 99988775 221 22245667789999998877 44443332111110 0000000000 0011
Q ss_pred hhhhhhccCCCCcCCCCc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 506 QLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 583 (1093)
..+.. .+...|. ...+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++|+..|+
T Consensus 462 ~~~~~------al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 462 PAIVR------LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred HHHHH------hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 11111 1124566 88999999999988 899999999999999999864 46667777889999999999999
Q ss_pred HHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHH
Q 001357 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (1093)
Q Consensus 584 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (1093)
+++...|. ...+..+|.++...|++.+|...|.+++...|. .......++.. .... |++++|+..
T Consensus 534 ka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~-l~~~------------Gr~~eAl~~ 598 (987)
T PRK09782 534 KISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ-RYIP------------GQPELALND 598 (987)
T ss_pred HHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH-HHhC------------CCHHHHHHH
Confidence 98777555 456788999999999999999999999998765 33333333333 3334 899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
|+++++.+|+ ..++.++|.++...|++++|+..|++++...| +++.++.++|.++...|++++|+..|++++..
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999996 88999999999999999999999999999998 78999999999999999999999999999998
Q ss_pred hcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 001357 744 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1093)
Q Consensus 744 ~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 797 (1093)
.|.++.+++.+|.++...|++++|...|++++.+.|++..+.+-.+.+.+..
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 6677999999999999999999999999999999999999999888875443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=352.14 Aligned_cols=649 Identities=12% Similarity=0.021 Sum_probs=502.3
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhH
Q 001357 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105 (1093)
Q Consensus 26 ~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~ 105 (1093)
...+..+|...|.+..+++.+|.+|..+|++++|+..+++++..+|.+ ...+..|+.+ +
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n---------~~~~~~La~i----~-------- 122 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD---------ARLERSLAAI----P-------- 122 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHh----c--------
Confidence 445566777899999999999999999999999999999999886632 2233334433 3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 177 (1093)
++.+|+.+|++++..+|.+..+++.++.. |.+.+....|+. .+.+..+|......+.++.+|..+|+
T Consensus 123 ---~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 123 ---VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred ---cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 34489999999999999999999999998 666655555554 33333334455566777999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK 256 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~ 256 (1093)
|++|+..+.++++..|.+ ...+..++.+|.. +++ +.|..++...++ .++.++..++..+...|+ .++|...
T Consensus 198 w~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~~A~~~ 269 (987)
T PRK09782 198 WSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KARLQHY 269 (987)
T ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 999999999999999999 6778889999988 577 888888775333 788999999999999999 6666655
Q ss_pred HHH---HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 257 MQR---AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 257 ~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
+.. +....|.+..-++.++...... ..+..-+.. ...+.....+..++..+...++++-+..+ +.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 337 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTV-----QFADNRQYVVGATLPVLLKEGQYDAAQKL----LA 337 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCch---hhhccchhh-----hhHHHHHHHHHHHHHHHHhccHHHHHHHH----hc
Confidence 554 4444566766666665543221 111111111 00122224455567888888988855544 21
Q ss_pred hcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CH
Q 001357 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DA 410 (1093)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~---~~ 410 (1093)
..|.... ...........+.+.++...+...++..|.+...+..++....+.|++.+|..+|+.+....++ +.
T Consensus 338 ---~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 338 ---TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred ---CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 2233322 2222223335588888888888888888999999999999999999999999999999875322 23
Q ss_pred HHHHHHHHHH-hcCC---HH----------------------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001357 411 QAFIDLGELL-ISSD---TG----------------------AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1093)
Q Consensus 411 ~~~~~la~~~-~~~~---~~----------------------~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 464 (1093)
.+...++.+| .... .. .+...+..+....+..+....+.+++++|.++.. +++
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 3444677776 4433 22 2223333333443322111267899999999987 899
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHH
Q 001357 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544 (1093)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 544 (1093)
.+|+..|.+++.. .|.. .....++.++...|++++|
T Consensus 493 ~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 493 GVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCHHHH
Confidence 9999999999873 3433 2366678888899999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCC
Q 001357 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1093)
Q Consensus 545 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 624 (1093)
+..|++++...|. ...++.+|.++...|++.+|..++.+++..+|.+...+..++......|++++|+..|.+++...|
T Consensus 529 i~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 529 LAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 9999998776555 456788899999999999999999999999999988888777777788999999999999999988
Q ss_pred CCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 001357 625 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (1093)
Q Consensus 625 ~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (1093)
. ..++..+|.+ +... |++++|+..|.+++..+|+++.+++++|.++...|++++|+..|+++++.
T Consensus 608 ~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 608 S--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred C--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 6678889988 8888 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 001357 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 705 ~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 784 (1093)
.| +++.+++++|.++..+|++++|+..|++++.. .+..+.+....|.+.....++..|.+.+.++..+.|...
T Consensus 673 ~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 673 LP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 98 78999999999999999999999999999998 667789999999999999999999999999999999875
Q ss_pred chhhHHHHH
Q 001357 785 TLRFDAGVA 793 (1093)
Q Consensus 785 ~~~~~la~~ 793 (1093)
+...++-+
T Consensus 746 -a~~~~g~~ 753 (987)
T PRK09782 746 -IGLRSGAM 753 (987)
T ss_pred -hccccchH
Confidence 44444443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=363.25 Aligned_cols=685 Identities=14% Similarity=0.065 Sum_probs=561.8
Q ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHH
Q 001357 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1093)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1093)
...++...+..+...|.+.|.+++|..+|..+......+ ....+..+...+...+... .|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~-----------~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAVE-----------EGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCHH-----------HHH
Confidence 445667789999999999999999999999987643211 1123444444444444444 788
Q ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 115 ~~~~~a~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
.++..+++..+. +......+...|.+.|+++.|...|+.+. +.+..+|..+...|.+.|++++|+.+|.++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999888877653 34455667778899999999999999875 34678899999999999999999999999987542
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
.....++..+...+...+++..+.+.+..++.... .+...+..|...|.+.|+ +..|...|..+. ..+..+|+
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n 257 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWN 257 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhH
Confidence 22245566677778888999999999998887542 256678888899999998 999999999764 34668899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.+...|...|++++|+.+|..+.... . ..+..++..+..++...|+.+.|.+++..+... .......++..+...|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g-~-~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELS-V-DPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMY 333 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHH
Confidence 99999999999999999999998653 2 334578888889999999999999999999874 2334467789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHHHH
Q 001357 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAAL 429 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~la~~~-~~~~~~~A~ 429 (1093)
.+.|++++|..+|+.+.. .+..+|..+...|.+.|++++|+.+|.++.... |+.. .+..+...+ ..|+++.|.
T Consensus 334 ~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 999999999999998753 467789999999999999999999999987654 6554 444444555 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001357 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1093)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1093)
.++..+.+. +...+..+++.+...|.+.|++++|..+|.++..
T Consensus 410 ~l~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 410 KLHELAERK----GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred HHHHHHHHh----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 999877654 4455678999999999999999999999987643
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 001357 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (1093)
.+..+|..+...|...|+..+|+.+|.+++...+.+..++..+...+...|..+.+..++..+++..
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 2456788899999999999999999999987656667888888889999999999999999998876
Q ss_pred -CCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 001357 590 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1093)
Q Consensus 590 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (1093)
..+..+...+..+|.+.|++++|...|..+ .++..+|..|... |... |+.++|+.+|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 345567778999999999999999999986 3478889999999 9888 99999999999999
Q ss_pred hhCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC
Q 001357 669 VQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (1093)
Q Consensus 669 ~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (1093)
..... |..+++.+...+.+.|.+++|..+|+.+.+..+- ..+...|..+..+|.+.|++++|.++++++ +..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi---~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI---TPNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 86533 6677888888999999999999999999965531 135678999999999999999999997765 467
Q ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH-HHhhhcCCChHH--HhhhchhhHHHHH
Q 001357 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA-STLQKTRRTADE--VWHDNTVLRVAEL 824 (1093)
Q Consensus 748 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l 824 (1093)
+++.+|..|..+|...|+.+.+....++++++.|++...+..++.+|...+. ....++++.|.+ +.+ +||++|.++
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k-~~g~s~ie~ 733 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV-DPGCSWVEV 733 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC-CCCccEEEE
Confidence 8899999999999999999999999999999999999999999999988776 556666666665 554 899999888
Q ss_pred HHHHHHH
Q 001357 825 ENAVRVF 831 (1093)
Q Consensus 825 ~~a~~~~ 831 (1093)
..-++.|
T Consensus 734 ~~~~~~f 740 (857)
T PLN03077 734 KGKVHAF 740 (857)
T ss_pred CCEEEEE
Confidence 7655554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=319.38 Aligned_cols=446 Identities=17% Similarity=0.131 Sum_probs=360.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+..+|..|+..|+.. +|+..|++++...|+ +..+..+|.+|+..|++++|+..|.+++..+|++.
T Consensus 127 a~~~k~~G~~~~~~~~~~-----------~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~ 194 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFN-----------KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS 194 (615)
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence 334556677776666655 999999999999995 77899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.+++.+|.++...|+|++|+..|..++...+.........+...+ ...+...+..++...|.+...+..++..+.
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 999999999999999999999998887776655222111111111 134556667777788887777776666543
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1093)
... ...+...+......+|.....+..++..+. ..+.|++|+..|+.++......|....++..+|.++...|
T Consensus 270 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 270 SFR----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred Hcc----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 221 122233344455556665555555554433 3578999999999999876556778889999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|
T Consensus 346 ~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 346 KHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998 678888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
++++.++|++..+++.+|.++ ..|++++|+..|.+++...|. .+.+++.+|.++...|++++|+..|++++...
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999 999999999999999987655 48899999999999999999999999999853
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHH-HHHHhcCChHHHHHHHHHHHHhcCC
Q 001357 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA-RLLEQIHDTVAASVLYRLILFKYQD 557 (1093)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (1093)
+... .... ....+...+ .++...|++++|+.+|++++..+|+
T Consensus 498 p~~~------------------------------------~~~~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 498 KETK------------------------------------PMYM-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred Cccc------------------------------------cccc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2100 0001 112223333 3344579999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh
Q 001357 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1093)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 594 (1093)
+..++..+|.++...|++++|+.+|++++.+.+....
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999999999999998876544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=318.49 Aligned_cols=436 Identities=16% Similarity=0.135 Sum_probs=350.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..+..+|..++..|+|++|+..|.+++...|+ +..+..+|.++..+|++++|+..|.+++..+|++ ..+++.+|.+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 35668899999999999999999999999995 7789999999999999999999999999999999 778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 001357 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1093)
.+|++++|+..|..++..++.+......+..... ...+...+..++...|.+...+..++.++... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998888776654433222211111 12344556666777777766666666654222 111111
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 289 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 289 ~~~~~al~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
..+.... ...+.....+..++..+ ...+.|++|+..|.+++......|....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1122111 12233334445555443 33578999999999999743335677788999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999988655
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch
Q 001357 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1093)
Q Consensus 445 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (1093)
....+.++|.++...|++++|+..|.+++. ..|..
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 477888999999999999999999999987 45778
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHH------HHHHH-HHHHHcCCHHHHHHHHHHHHHHcCCChhHHH
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 597 (1093)
+.+++.+|.++...|++++|+..|.+++...|..... +...+ .++...|++++|..++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999988864322 22222 2334468999999999999999999999999
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 598 MLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.+|.++...|++++|+..|++++.+.+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=324.37 Aligned_cols=641 Identities=13% Similarity=0.053 Sum_probs=535.6
Q ss_pred ChhHHHHHHHhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001357 25 DASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1093)
Q Consensus 25 ~~~~~~~~l~~e--~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1093)
++..++..+... +.+..+|..+..++...+.+..+..++..++...+.. .+.+.+.|...|.+.|...
T Consensus 69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~n~li~~~~~~g~~~-- 138 (857)
T PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL--------GVRLGNAMLSMFVRFGELV-- 138 (857)
T ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC--------CchHHHHHHHHHHhCCChH--
Confidence 455555555553 3566688889999999999999999999876554321 2346678888899988877
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDS 181 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A 181 (1093)
.|..+|+++. +.+..+|..+...|.+.|++++|+.+|.++.... ..+...+..+...+...+++..+
T Consensus 139 ---------~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 139 ---------HAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred ---------HHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 8999999885 3467899999999999999999999999998643 33556666677777888999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
..++..+++........++..+..+|.+.|+++.|..+|.++.. .+...|..+...|...|+ +.+|+..|.++.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~ 280 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 99999999876554467788899999999999999999999643 356789999999999999 999999999998
Q ss_pred HhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001357 262 EIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1093)
Q Consensus 262 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1093)
... ..+..++..+...+...|+.+.+..++..+.... ...+..++..+...|.+.|++++|..+|+.+.. +
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~- 352 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----K- 352 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-
Confidence 753 3456788888899999999999999999988753 234578899999999999999999999998642 2
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001357 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLG 417 (1093)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la 417 (1093)
....|..+...|.+.|++++|+.+|..+.... | +..++..+...+...|+++.|..++..+.+.. ..+..++..+.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34679999999999999999999999987653 5 44566777778999999999999999999875 34677888899
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 418 ~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
..| ..|++++|...|.++.. .+...|+.+...|...|++++|+.+|.++...
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------- 484 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------- 484 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-------------------
Confidence 999 99999999999887532 24568899999999999999999999999752
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHcCCH
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNL 575 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~ 575 (1093)
..| +..++..+..++...|..+.+..++..+++... .+...+..+..+|.+.|++
T Consensus 485 -----------------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 485 -----------------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred -----------------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 233 555666777788899999999999999987542 3456677888999999999
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHH
Q 001357 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655 (1093)
Q Consensus 576 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~ 655 (1093)
++|...|..+ +.+..+|..+...|.+.|+.++|+..|+++......++..++..+... |... |
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g 603 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------G 603 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------C
Confidence 9999999886 567889999999999999999999999999988777788888888888 8888 9
Q ss_pred HHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 001357 656 HLEKAKELYTRVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1093)
Q Consensus 656 ~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 733 (1093)
.+++|..+|+.+....+ -+...+..++.+|.+.|++++|..+++++. .. .++.+|..|-..+...|+.+.|
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999985432 256789999999999999999999999873 22 3678898888888889999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 734 ~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
....+++++. .|.++..+..|+.+|...|+|++|.++.+.+...
T Consensus 677 e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 677 ELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999987 6677889999999999999999999999887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-29 Score=277.47 Aligned_cols=646 Identities=16% Similarity=0.124 Sum_probs=460.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
+++|+.++..+++++|.++.+|+.+|.+|-++|+.++++.+.-.+-.++|++...|..++.....+|++..|.-+|.+++
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHH-HHHHHHHHHHhhhHHhHHHHHHHHHHHHHh-
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEA-LVALAVMDLQANEAAGIRKGMEKMQRAFEI- 263 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a-~~~la~~~~~~~~~~~~~~Al~~~~~al~~- 263 (1093)
+.+|.+ ....+..+.+|.++|+...|...|.+++.+.|.. ... -...+..+...++ -+.|++.+..++..
T Consensus 235 ~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 235 QANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALSKE 310 (895)
T ss_pred hcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhhc
Confidence 999999 6778889999999999999999999999999921 111 2223445555555 58888888888873
Q ss_pred -CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------c---cCCCCCchHH-HHHHHHHHH
Q 001357 264 -YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------V---TNHGPTKSHS-YYNLARSYH 316 (1093)
Q Consensus 264 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~---~~~~~~~~~~-~~~la~~~~ 316 (1093)
+-.....++.++.+|.....++.+......... . ....+.+..+ ...++.+..
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 333456778899999999999999888776654 0 0111111222 445555555
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Q 001357 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A 395 (1093)
..++..+++..+..--. -...+.+..++.++.+|...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++.|
T Consensus 391 ~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55666666655543321 124566778999999999999999999999999886543 467999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
+..|.+++...|++.++.+.|+.++ .+|++++|++.+.....-. +.........+......++...|+.++=+..
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999 9999999999888754211 1111122356778889999999999886655
Q ss_pred HHHHHhcchhhhhccccc-c--hhhhhh----hhhHHHhh---------h-hhhhhhhccC--CCCcCCCCchH----HH
Q 001357 471 FKDALGDGIWLTLLDSKT-K--TYVIDA----SASMLQFK---------D-MQLFHRFEND--GNHVELPWNKV----TV 527 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~-~--~~~~~~----~~~~~~~~---------~-~~~~~~l~~~--~~~~~~~~~~~----~~ 527 (1093)
...++........+-+.. + ...... ..+..... + ...-..+... ........... ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 555554322211111100 0 000000 00000000 0 0000000000 00001111122 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcC----Ch-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChhHH
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQ----DY-V-DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNAL 596 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 596 (1093)
...+..++.+.+++.+|..+...++.... .. . ..-+....+.+..+++..|..++..++.. +|..+.+|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44557778899999999999888876332 11 1 22233344566788999999999998887 55555566
Q ss_pred HHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHH
Q 001357 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1093)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (1093)
...-.+....++-.--.+.+..++...+..++...+..|.. .+.. +.+..|+..|.++...+|++|.
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl 775 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPL 775 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCCcH
Confidence 64444444455544444555555555555445555555666 6666 8899999999999999999988
Q ss_pred HHHHHHHHHHhcC----------CchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q 001357 677 AANGAGVVLAEKG----------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 677 a~~~la~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 746 (1093)
.-..+|..+.+.. ..-+++.++.+..++.... ....+.+|+|.+|...|-..-|+.+|+++|...|.
T Consensus 776 ~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 776 INLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 8777777766431 3456777777776665321 36789999999999999999999999999987432
Q ss_pred C--------CC--HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001357 747 N--------TD--AQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1093)
Q Consensus 747 ~--------~~--~~~l~~la~~~~~~g~~~~A~~~~~~al 777 (1093)
+ .+ -.+-++|..+|..+|+...|.+++.+-+
T Consensus 853 ~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 853 DVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred ccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 1 11 5677889999999999999998887643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-26 Score=249.79 Aligned_cols=599 Identities=16% Similarity=0.134 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
-++..+|..++....+.||.+|..|+.-|.+--..|++..|..+..+-.+..|.+...|+.-+ ++...+.|..+..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999999888887754 3455566666666
Q ss_pred HHHHhCCCChHHHHHHHHH---------------------------HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGL---------------------------CRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.+++..|.+ +.+|+..+. .-..+.+.+.|+-.+.++++..|.+.+.|+.|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 777766666 444433222 2233445556777777777777777777766665
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHh
Q 001357 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 317 (1093)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~ 317 (1093)
+. .|..|...+.++-+.-|.++.+|..-+.+--..|+.+.+.++..+.+..... ...+-+.|+.-+..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 42 2666777777777777777777777777777777777777777776643222 22344667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001357 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1093)
.|..-.+..+....+...-...+.-..|+.-++.+.+.+.++-|+.+|..+++.+|....+|...+.+--..|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 77766666666666554334455556677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 398 ~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
+|++++...|.....|+..+..+ ..|+...|..++..+....|+ +.+++.....+.+...+++.|..+|.++..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777777777777777777 777777777777777766544 366777777777777777777777777765
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 001357 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1093)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1093)
.. ....+|+.-+.+...+++.++|+.+++.+++.+|
T Consensus 647 ~s--------------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 IS--------------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cC--------------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 32 2456666667777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHh
Q 001357 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 636 (1093)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~ 636 (1093)
++...|+.+|.++...++.+.|...|...++..|.++.+|..++.+-.+.|....|...|.++.-.+|. +...++....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777766 3333332222
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhH
Q 001357 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (1093)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (1093)
+ =+.. |..+.|..+..++|+..|++...|..-..+.-+-++-..++..+++. . .++.+
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchh
Confidence 2 2222 77777777777777777777766666555555555544444444333 2 46777
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001357 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1093)
Q Consensus 717 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 791 (1093)
++..|.++....+++.|.+.|.++++.. +....+|.++-..+...|.-++-.++|.+.....|.....+..++
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 7777777777777888888888877773 333445555556677777777777777777777777655554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-27 Score=264.62 Aligned_cols=634 Identities=18% Similarity=0.196 Sum_probs=458.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHH
Q 001357 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1093)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1093)
+.-.+..|+..+-+|++++|..++.+++..+|. ....+.+||.+|-.+|+.+ ++....-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 557889999999999999999999999887663 3567899999999999888 89999999
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q 001357 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---- 195 (1093)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---- 195 (1093)
|..++|.+...|..++.....+|++.+|.-+|.++++.+|.+.......+.+|.+.|++..|...|.+++...|..
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-----------
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE----------- 262 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~----------- 262 (1093)
....-...+..+...++.+.|++.++.++.... ...+.+..++.+++.... ++.++..+.....
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 123334567788888888999999999988322 234456677777777766 7777776655544
Q ss_pred -----------hC------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 001357 263 -----------IY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1093)
Q Consensus 263 -----------~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1093)
+. +.+..+ ..+..++......+....+..............+..++.++.+|...|+|..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 10 111122 233334444444443333333333322224556789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.+|..++.. .......+|+.+|.||...|.++.|+.+|++++...|++.++...|+.++.++|++++|++.+.....-
T Consensus 435 ~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 999999863 223346689999999999999999999999999999999999999999999999999999999987633
Q ss_pred CCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc----------------C--CC------------
Q 001357 406 DPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA----------------G--EE------------ 445 (1093)
Q Consensus 406 ~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~----------------~--~~------------ 445 (1093)
++. ..........++ ..|+.++-+.....++..+... + ..
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~ 592 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRA 592 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHH
Confidence 211 233445555666 7777666444333322211000 0 00
Q ss_pred ---------------------------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001357 446 ---------------------------VP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 494 (1093)
Q Consensus 446 ---------------------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 494 (1093)
.. .+++..+..++.+.+.+.+|+.+...++....
T Consensus 593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~--------------- 657 (895)
T KOG2076|consen 593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI--------------- 657 (895)
T ss_pred HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh---------------
Confidence 00 12222233444455555555555555544210
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCcCCCCchH-HHHHHHHHHHHhcCChHHHHHHHHHHHHh-----cCChHHHHHHHHHH
Q 001357 495 ASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLRLAAI 568 (1093)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~ 568 (1093)
....+... ..-+....+-...+++..|..+++.++.. +|.....|+..-..
T Consensus 658 -----------------------f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~ 714 (895)
T KOG2076|consen 658 -----------------------FFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY 714 (895)
T ss_pred -----------------------hhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 00111222 33334445566779999999999999887 55555555533334
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCC-hhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcc
Q 001357 569 AKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (1093)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~ 647 (1093)
....++-.--..++..++..+|.+ +......|..++..+.|..|+..|-++....|. ++...+.+|.. |...+..
T Consensus 715 ~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lgla-fih~a~q-- 790 (895)
T KOG2076|consen 715 FSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLA-FIHLALQ-- 790 (895)
T ss_pred HHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHH-HHHHHHH--
Confidence 444444444455566666677777 667778899999999999999999999999887 55555566766 6554221
Q ss_pred cCchHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-------CCchhHHH
Q 001357 648 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-------VQMPDVWI 718 (1093)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~ 718 (1093)
+....+.-..-+++.++.+..++.-. ...+.+++|.+|-..|-..-|+.+|+++++..|.+.. .-.-.+-+
T Consensus 791 r~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~ 870 (895)
T KOG2076|consen 791 RRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY 870 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh
Confidence 11111224566778888777766655 7789999999999999999999999999999764321 11345778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 001357 719 NLAHVYFAQGNFALAMKMYQNCL 741 (1093)
Q Consensus 719 ~lg~~~~~~g~~~~A~~~~~~al 741 (1093)
||..||...|+...|..++.+.+
T Consensus 871 NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 871 NLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hhhhhhccCCcHHHHHHHHHhhc
Confidence 99999999999999999977654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-28 Score=258.12 Aligned_cols=566 Identities=14% Similarity=0.105 Sum_probs=355.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1093)
...+...|+|++|.+...+++... |.+..+++....++.+.+.|++|+.+.+.-.. ........+..++|.++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHH
Confidence 344556677777777777777544 56667888888888888999998855544331 01111223788999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~ 434 (1093)
.+..++|+.++. ..++.+..++...|++++++|+|++|+.+|+.+++.+.++.+.......+-.. .+... +
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~--~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV--Q 162 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH--H
Confidence 999999999998 34566778999999999999999999999999988876665554433332200 00000 0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccC
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (1093)
.++..+.. .....+.++|.++++...|+|.+|++.+.+++.+|...-..+...
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-------------------------- 215 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-------------------------- 215 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--------------------------
Confidence 12222221 123578999999999999999999999999988764221111100
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----CCHH-HHHHHHHHHHHHc
Q 001357 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQ-LSIELVNEALKVN 589 (1093)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~-~A~~~~~~al~~~ 589 (1093)
.-++......+...++.++..+|+..+|..+|..++..+|.+........+.+... .-++ .++..++......
T Consensus 216 --eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 216 --EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 01122345678899999999999999999999999998887643333322222211 1111 1222222211111
Q ss_pred CC----------ChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHH
Q 001357 590 GK----------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (1093)
Q Consensus 590 p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (1093)
++ -..++.+.+.+.+..+..+.+.+.....-...|.....++ +-.. +... ...+.+
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~~~~k 359 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EKKHKK 359 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HHHHhh
Confidence 11 1235566677777777777777666554444443222222 1111 1111 146889
Q ss_pred HHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCC--CCCCchhHHHHHHHHHHHhcCHHHHHHH
Q 001357 660 AKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAMKM 736 (1093)
Q Consensus 660 A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 736 (1093)
|..++......+|.+ ......++++.+.+|++..|+.++..+++....+ .....|.+...+-..|...+..+.|...
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~v 439 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAV 439 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHH
Confidence 999999999999997 7788899999999999999999999444221100 0013455555666678888888889999
Q ss_pred HHHHHHhhcCCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhcCCChHH
Q 001357 737 YQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 811 (1093)
Q Consensus 737 ~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 811 (1093)
+..++..|..... -.++..++....+.|+-++|...++++++.+|+|..+...+..+|.......-....+.+.
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~- 518 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKLP- 518 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcCC-
Confidence 9999988754433 3445566777778899999999999999999999888877776665544321111111111
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001357 812 VWHDNTVLRVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA 891 (1093)
Q Consensus 812 ~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 891 (1093)
+...+. ++++-......+..+..++.. .+. .+ .
T Consensus 519 --------p~~~l~-~vdVd~LE~s~ga~~~~~~k~---------------ta~---------------S~--------~ 551 (652)
T KOG2376|consen 519 --------PLKGLK-AVDVDALEKSDGAKYSEAYKK---------------TAV---------------SQ--------V 551 (652)
T ss_pred --------Ccccch-hcCchHhhhccCcchhhhhcc---------------ccc---------------cc--------h
Confidence 122222 344433333322211100000 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-----hhcChhhhhhhccC-CCCcccc
Q 001357 892 EEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW-----RSSTPASKRRERSE-NDDDEVG 953 (1093)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-----~~~~~~~~~~~~~~-~~~~~~~ 953 (1093)
++++... ...++++.++-+.|+.|.+..+|||||| ||+||||+||++++ .-.||||
T Consensus 552 ~~~~~~~------~kKKk~rKrkgk~pknyn~~~tPDPERWLP~reRS~yr~KrK~k~~~~~kgtQG~ 613 (652)
T KOG2376|consen 552 EEKKSKE------LKKKKKRKRKGKLPKNYNPKVTPDPERWLPRRERSTYRPKRKGKRAAIIKGTQGG 613 (652)
T ss_pred hhccchh------hhhhcccccccCCcccCCCCCCCChhhcccchhccccCcccccchhhhhcccccc
Confidence 0000000 0111234555579999999999999999 99999998877743 3457887
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-24 Score=231.53 Aligned_cols=596 Identities=13% Similarity=0.101 Sum_probs=498.5
Q ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHH
Q 001357 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1093)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1093)
..|..+..|+.-|+.--..|++.-|..++.++.+..+.. + .+++..-++. ..+.|.
T Consensus 280 tnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-------e---------DvWLeaiRLh--------p~d~aK 335 (913)
T KOG0495|consen 280 TNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-------E---------DVWLEAIRLH--------PPDVAK 335 (913)
T ss_pred cCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-------H---------HHHHHHHhcC--------ChHHHH
Confidence 466778899999999999999999999999998876532 1 1122222222 112578
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
.+...+++..|+++..|+..+.+-. +...=..+++++++..|++...|-.. ....+.+.|.-++.++.+..|.
T Consensus 336 ~vvA~Avr~~P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 336 TVVANAVRFLPTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHHHHhCCCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccc
Confidence 8888999999999999998776643 34445678999999999998877543 4567778899999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh---C--CCcHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI---Y--PYCAM 269 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~---~--p~~~~ 269 (1093)
+ ..+|+ +|.++.-|+.|..++.++-+.-|.+...|..-+.+--..|+ ...-...+.+.+.. + .-+..
T Consensus 409 s-~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 409 S-MDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred h-HHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeecHH
Confidence 8 55554 45566779999999999999999999999999999999998 55555555554432 2 22456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 001357 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1093)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1093)
.|..-|..+-..|..--+..+....+...-........|..-+..+...+.++-|..+|..+++. .|..-..|...+
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~ 557 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAA 557 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHH
Confidence 77777888878888888888888888776666777789999999999999999999999999984 455667788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHH
Q 001357 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAA 428 (1093)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A 428 (1093)
..-..-|..+.-..+|++++...|.....|...+..+...|+...|..++..++..+|++..+|+.-..+. ....++.|
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999888888 88999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1093)
..+|.++....+ ...+|+.-+.+...+++.++|+.+++++++
T Consensus 638 R~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~rllEe~lk-------------------------------- 679 (913)
T KOG0495|consen 638 RDLLAKARSISG------TERVWMKSANLERYLDNVEEALRLLEEALK-------------------------------- 679 (913)
T ss_pred HHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHHHHHHHHHH--------------------------------
Confidence 999999877433 367888889999999999999999999998
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001357 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588 (1093)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (1093)
..|....+|..+|.++..+++.+.|...|...++.+|..+..|+.|+.+-...|+.-.|..++.++.-.
T Consensus 680 -----------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 680 -----------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred -----------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 001357 589 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1093)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (1093)
+|.+..+|.....+.++.|+.+.|...+.++++..|++.. .+ ...+ ++.. +. ++-. .+..++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~-LW--aEaI-~le~-~~---------~rkT----ks~DAL 810 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-LW--AEAI-WLEP-RP---------QRKT----KSIDAL 810 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch-hH--HHHH-Hhcc-Cc---------ccch----HHHHHH
Confidence 9999999999999999999999999999999999987322 22 1122 2221 11 2222 234455
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001357 669 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 744 (1093)
+....|+..+..+|.++....++++|..+|.+++...| +..++|..+-..+...|.-++-.++|.+|..--
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 55677889999999999999999999999999999998 788899988889999999999999999988763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-26 Score=285.14 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=327.1
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
+..+.. ....|.++........++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++...|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555 4556777777777888888999999999999999888888888899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
.+ +.+++.++.++...|++++|+..+++++...|++.. +..+|.++...|+ +.+|+..+++++...|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 667888999999999999999999999999999999 9999999999888 899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHh-----cCCH---HHHHHHHHHHHHhcCCCCCch--
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFI-- 342 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~~-- 342 (1093)
++.++...+..+.|+..++.+...... ..........+.+.+.. .+++ ++|+..|+.++...+..|...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999898888766531100 00001122223333322 2334 788889998887544444332
Q ss_pred --hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 001357 343 --FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 415 (1093)
Q Consensus 343 --~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~----~~~~~~ 415 (1093)
.+.+.....++..|++++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 2222222344677999999999999988764322 344446889999999999999999998887765 355666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcC--------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001357 416 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484 (1093)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~--------~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 484 (1093)
++.++ ..+++++|+..+..+....|... .+. ...++..++.++...|++++|+..|++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 88999999999888877654210 001 134556677777777777777777777776
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHH
Q 001357 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564 (1093)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (1093)
..|.+..+++.+|.++...|++++|+..+++++..+|++..+++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 456667777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHH
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 597 (1093)
++.++...|++++|...++++++..|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 777777777777777777777777777775443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=272.51 Aligned_cols=323 Identities=11% Similarity=0.012 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
++.+|+.++..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-Cc
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 267 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~ 267 (1093)
+..+|.+ ..++..+|.++...|++++|+..+.+++...|++..++..++. +...|+ +.+|+..+.+++..+| ..
T Consensus 137 l~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 137 WLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFALER 211 (656)
T ss_pred HHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCCcc
Confidence 9999999 7789999999999999999999999999999999988877644 677788 9999999999999876 34
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCCchh
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEFIF 343 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~ 343 (1093)
......++.++...|++++|+..+.+++... |..+.+++.+|.++...|++++ |+..|++++. ..|+...
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~ 285 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVR 285 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHH
Confidence 4455667889999999999999999999754 6778999999999999999986 8999999998 5678889
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hc
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~ 422 (1093)
++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|.+++..+|.+...+..++.++ ..
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988787788888 99
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 001357 423 SDTGAALDAFKTARTLLKKA 442 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~ 442 (1093)
|++++|+..|++++...|..
T Consensus 366 G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCHHHHHHHHHHHHHhChhh
Confidence 99999999999999987764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=275.69 Aligned_cols=409 Identities=12% Similarity=0.002 Sum_probs=341.0
Q ss_pred HHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001357 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166 (1093)
Q Consensus 87 ~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 166 (1093)
.....+....|... +|+..+.++...+|....++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus 19 ~d~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 19 ADWLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred HHHHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33445556666655 8999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
.++.++...|++.+|+..+++++...|++ .. ++.+|.++...|++++|+..|++++...|++..++..++.++...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999 55 89999999999999999999999999999999999999999988887
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhccCCCCCc----hHHHH
Q 001357 247 AAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF-----FTGQH---FLVEQLTETALAVTNHGPTK----SHSYY 309 (1093)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~----~~~~~ 309 (1093)
.+.|+..+.++.. .|.... ....+..+.. ..+++ ++|+..++.++...+..|.. ..+.+
T Consensus 166 ---~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 ---SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ---hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 8889999987765 554211 1122222222 22334 67888888888664444432 22233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHH
Q 001357 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHI 385 (1093)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~ 385 (1093)
.....+...|++++|+..|++++...+..|.. +...+|.+|+..|++++|+.+|++++...|.+ ......++.+
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 32334567899999999999998742222443 34446899999999999999999999888765 4567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPR---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~---------------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1093)
+...|++++|+.++.++....|. ...++..++.++ ..|++++|+..+++++...|. .+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~ 394 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQG 394 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH
Confidence 99999999999999999988763 245677888888 999999999999999887665 488
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001357 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1093)
Q Consensus 450 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 529 (1093)
++..+|.++...|++++|+..+++++. ..|++..+++
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~-------------------------------------------l~Pd~~~l~~ 431 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEV-------------------------------------------LEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------------------------hCCCChHHHH
Confidence 999999999999999999999999998 6788999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCChHHHH
Q 001357 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (1093)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (1093)
.+|.++...|++++|...++.++...|+++.+.
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999987554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-25 Score=270.37 Aligned_cols=337 Identities=11% Similarity=0.005 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1093)
......+..++..|++.+|+..+...+. ..|....+++.+|.++...|+++.|+..|++++..+|+++.++..+|.+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344555566666666666666666666 4555556666666666666677777777776666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 464 (1093)
+...|++++|+..|++++.++|++..++..++.++ ..|++++|+..+..+....|. ++..+..++ .+...|++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-----~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-----RGDMIATCL-SFLNKSRL 193 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-----CHHHHHHHH-HHHHcCCH
Confidence 66666777777777666666666666666666666 666666666666655554332 233343332 35666667
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHH
Q 001357 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544 (1093)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 544 (1093)
++|+..+..++... .+........++.++...|++++|
T Consensus 194 ~eA~~~~~~~l~~~------------------------------------------~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 194 PEDHDLARALLPFF------------------------------------------ALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHHHHHHHHHhcC------------------------------------------CCcchhHHHHHHHHHHHCCCHHHH
Confidence 77766666665521 111222334445666666777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL----SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 545 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
+..|.+++..+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 232 ~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 232 IQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666666666666667766666666664 5666677777777666666677777777777777777777666
Q ss_pred hcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 001357 621 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700 (1093)
Q Consensus 621 ~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 700 (1093)
...|. +..++..+|.+ |... |++++|+..|.+++..+|.+..+...+|.++...|++++|+..|++
T Consensus 312 ~l~P~-~~~a~~~La~~-l~~~------------G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 312 ATHPD-LPYVRAMYARA-LRQV------------GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HhCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655 45555566666 6665 6667777777777766666665555566666666777777777777
Q ss_pred HHHHhcC
Q 001357 701 VQEAASG 707 (1093)
Q Consensus 701 ~~~~~p~ 707 (1093)
+++..|.
T Consensus 378 al~~~P~ 384 (656)
T PRK15174 378 YIQARAS 384 (656)
T ss_pred HHHhChh
Confidence 7666663
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-23 Score=252.06 Aligned_cols=420 Identities=11% Similarity=0.026 Sum_probs=228.6
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
++.+++....-.+ +...++..-..+++.|++.+|+.+|+.+...+ +.+...+..+...+...|...+|+.+|..+..
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 3444444433322 23334444444555666666666666665443 22233333344445555666666666555432
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-CcH
Q 001357 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCA 268 (1093)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~~ 268 (1093)
|+ ...|..+..+|.+.|+++.|..+|..+.+.... +...+..+...|...|+ ++.|...|..+..... .+.
T Consensus 435 --pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 435 --PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred --CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCH
Confidence 32 344555555556666666666666666554322 44555556666666665 6666666666655432 245
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCCchhhHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYYG 347 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~ 347 (1093)
.+|+.+...|.+.|++++|..+|..+.... . ..+..+|..+...|.+.|++++|..+|..+... .+..|+ ...|..
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v-~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKN-V-KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 566666666666666666666666655432 1 123455666666666666666666666666532 111222 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCC
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSD 424 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~~ 424 (1093)
+..+|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..+|..+...+ ..|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 6666666666666666666665543 3345566666666666666666666666665542 11344555555555 6666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001357 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1093)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1093)
+++|..++..+.+. +...+..+++.+...|.+.|++++|..+|..+...+
T Consensus 665 ~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-------------------------- 714 (1060)
T PLN03218 665 LDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-------------------------- 714 (1060)
T ss_pred HHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------------------------
Confidence 66666666554432 333445566666666666666666666666655421
Q ss_pred hhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1093)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 583 (1093)
..| +..+|..+...|.+.|++++|..+|..+.... ..+..+|..+...+...|+++.|..++.
T Consensus 715 ---------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 715 ---------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred ---------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 122 34556666666666666666666666655421 1223455555566666666666666666
Q ss_pred HHHHHc
Q 001357 584 EALKVN 589 (1093)
Q Consensus 584 ~al~~~ 589 (1093)
.+++..
T Consensus 779 ~M~k~G 784 (1060)
T PLN03218 779 QAKEDG 784 (1060)
T ss_pred HHHHcC
Confidence 665543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=226.97 Aligned_cols=425 Identities=16% Similarity=0.174 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.++-..|.-+++.|+|++|+++|.+++.+.|+. +..|.+++.||..+|++++.++...++++++|+.+.+++..+..+.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 345567777788888888888888888888876 5567778888888888888888888888888888888888888887
Q ss_pred HhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1093)
..|+ +.+|+....-..-+. -.+..+...+-.++-.+ +..-.+.-++. ...|..+.+.+.-.
T Consensus 195 ~lg~---~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~-nr~p~lPS~~fi~s--------- 256 (606)
T KOG0547|consen 195 QLGK---FDEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLKE-NRPPVLPSATFIAS--------- 256 (606)
T ss_pred hhcc---HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhcc-cCCCCCCcHHHHHH---------
Confidence 7777 666665443221110 01111110111111110 11111111110 11122111111100
Q ss_pred HHHHHHHHHHHH-----hcCCCCCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCc---------HHHHH
Q 001357 322 EKAGLYYMASVK-----EINKPHEFIFPYYGLGQVQLKLG---DFRSALTNFEKVLEIY----PDN---------CETLK 380 (1093)
Q Consensus 322 ~~A~~~~~~al~-----~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~----p~~---------~~~~~ 380 (1093)
|-.... ......+...+-..-+.-....+ .|..|...+.+..... ..+ ..++.
T Consensus 257 ------yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 257 ------YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred ------HHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 000000 00000000011111111111111 3444444443332211 001 34455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 001357 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 460 (1093)
Q Consensus 381 ~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~ 460 (1093)
..|..++-.|+.-.|...|+.++.++|.+...|+.++.+| ..
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y--------------------------------------~d 372 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAY--------------------------------------AD 372 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHH--------------------------------------hh
Confidence 5555555555666666666666655555555555555444 44
Q ss_pred cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001357 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540 (1093)
Q Consensus 461 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 540 (1093)
..+.++-...|.++.. ++|.++.+|+..|.++.-+++
T Consensus 373 ~~~~~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 373 ENQSEKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhccHHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHH
Confidence 4444455555555554 456667777777777777777
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
+++|+.-|++++.++|+++-++..++.+..+++.+.++...|+.+....|+.++++...+.++..+++++.|.+.|.+++
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCC-----ChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHH
Q 001357 621 DATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1093)
Q Consensus 621 ~~~~~~-----d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (1093)
.+.|.. ....++.-+.+ .++. .+++..|+.++.++++++|.+-.++.+||.+..++|+.++|+
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l-~~qw-----------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALL-VLQW-----------KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hhccccccccccchhhhhhhHh-hhch-----------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 766541 11122222222 1111 189999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 001357 696 DLFTQVQEAA 705 (1093)
Q Consensus 696 ~~~~~~~~~~ 705 (1093)
++|++.....
T Consensus 558 elFEksa~lA 567 (606)
T KOG0547|consen 558 ELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHH
Confidence 9999998876
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-22 Score=248.60 Aligned_cols=545 Identities=13% Similarity=0.050 Sum_probs=426.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (1093)
...++.+++..+... .+...+..+-..+.+.|++.+|+.+|+.+...+.-. ....+..+..++.+.|...+|...|..
T Consensus 353 ~~~~~~~~~~~~~~~-~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 353 EENSLAAYNGGVSGK-RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhhHHHhccccCCC-CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555554433 345555555666778999999999999998876432 133444566778889999999999988
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC
Q 001357 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (1093)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 301 (1093)
+.. | +...|..+...+...|+ ++.|...|..+.+.. +.+..+++.+...|...|+.+.|..+|..+.... .
T Consensus 432 M~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v 503 (1060)
T PLN03218 432 IRN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--V 503 (1060)
T ss_pred cCC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--C
Confidence 754 4 56778888888888888 999999999998865 3477899999999999999999999999998643 2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCE 377 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~ 377 (1093)
..+..+|..+...|.+.|++++|+.+|..+... ........|..+...|.+.|++++|..+|..+... .| +..
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 335689999999999999999999999998763 22234567999999999999999999999999763 34 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 455 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la 455 (1093)
++..+..+|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+... +..++..+++.+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI 656 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALV 656 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 89999999999999999999999999876 56778899999999 999999999999987653 4455678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
..|.+.|++++|..+|..+...+ . +.+..++..+...|
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G-----------------------------------------~-~pd~~tynsLI~ay 694 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQG-----------------------------------------I-KLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC-----------------------------------------C-CCCHHHHHHHHHHH
Confidence 99999999999999999998753 2 23667899999999
Q ss_pred HhcCChHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChhHHHHhhhhhhcccchHHH
Q 001357 536 EQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKA 612 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 612 (1093)
.+.|++++|..+|..+... .| +..+|..+...|.+.|++++|..+|.++.... ..+..++..+...+.+.|+++.|
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998763 34 46889999999999999999999999987654 33466788888999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCch
Q 001357 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 692 (1093)
Q Consensus 613 ~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 692 (1093)
..+|..+++....++...+..+..+ +. +.+.+|......++..++.++ ....+...
T Consensus 774 ~~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~---------~~~n~w~~ 829 (1060)
T PLN03218 774 LDLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRP---------QIENKWTS 829 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhcccc---------ccccchHH
Confidence 9999999998877787777666444 21 446667666666555443322 22233456
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhcc-HHHHHH
Q 001357 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKK 771 (1093)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~-~~~A~~ 771 (1093)
.|+.+|+++++..-. .+..++..+-.|++..+....+..+++.+. .-+..++..++..|-..+ |+ ..+|..
T Consensus 830 ~Al~lf~eM~~~Gi~----Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~ 901 (1060)
T PLN03218 830 WALMVYRETISAGTL----PTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFS 901 (1060)
T ss_pred HHHHHHHHHHHCCCC----CCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHH
Confidence 799999999987631 245566666677778888888777766533 223455566677777665 33 357999
Q ss_pred HHHHHHHh
Q 001357 772 SLLRAIHL 779 (1093)
Q Consensus 772 ~~~~al~~ 779 (1093)
.|+.+...
T Consensus 902 l~~em~~~ 909 (1060)
T PLN03218 902 LLEEAASL 909 (1060)
T ss_pred HHHHHHHc
Confidence 99998875
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-25 Score=228.08 Aligned_cols=428 Identities=16% Similarity=0.142 Sum_probs=322.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.+-.+|+-++..|+|++|+++|..++...|+.+..+..++.||...|+|++-++...+++.++|+. ..+++..+.++-.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 455689999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHH-cCChHH
Q 001357 210 LGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE-IYPYCAMALNYLANHFFF-TGQHFL 286 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~-~~p~~~~~~~~la~~~~~-~g~~~~ 286 (1093)
+|++.+|+.-..-..-+ .-.+...-..+-.++-.+ |+.....-+. ..|.....-..++..+.. ..+.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~--------a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ--------AMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH--------HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--
Confidence 99999998765543221 112222222222222222 3333333333 122111111111111100 0000
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCC-CCC---------chhhHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINK-PHE---------FIFPYYGLGQVQL 353 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~-~~~---------~~~~~~~la~~~~ 353 (1093)
..........+.....-+.-++..+ .|..|...+.+....... ... .+.++...|..++
T Consensus 266 --------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 --------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred --------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0000000111222222222222233 577777777665542211 111 2566777888899
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH
Q 001357 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF 432 (1093)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~ 432 (1093)
-.|++-.|...|..++.++|.+...|..++.+|...++.++....|.++..++|.++++|+..|+++ ..++++.|+.-|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001357 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1093)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (1093)
++++.+.|. ....+..++++.++.+.++++...|+.+..
T Consensus 418 ~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk------------------------------------ 456 (606)
T KOG0547|consen 418 QKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK------------------------------------ 456 (606)
T ss_pred HHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 999998776 477888999999999999999999999988
Q ss_pred cCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC------hHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 001357 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVNEA 585 (1093)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~a 585 (1093)
..|..+.++...|.++..+++++.|.+.|..++.+.|. ++..+...+.+.. -.+++..|+.++.++
T Consensus 457 -------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 457 -------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA 529 (606)
T ss_pred -------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence 46788899999999999999999999999999999988 5555555444432 448999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCC
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 624 (1093)
++++|.+..++..||.+.+++|+.++|+.+|++++.+..
T Consensus 530 ~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 530 IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-23 Score=229.44 Aligned_cols=644 Identities=15% Similarity=0.089 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
+...|+..|-++++++|....+|..+|..|...-+...|..+|+++.+++|.+..++-..+..|....+++.|..+.-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999997666
Q ss_pred HHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 189 l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
-+..|.. ....|..+|..|...+++..|+..|+.++..+|.+..+|..+|.+|...|. +..|++.|.++..++|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHh
Confidence 6666543 123355689999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CC-
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP- 338 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~- 338 (1093)
..+.+..+.+....|.|.+++..+...+..... ....++++..++..++..|-+.+|..++++++..+- ..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988887743211 223456777778888888887788777777765321 00
Q ss_pred CCchhhHHHHHHHHHHc-----------------------CCH------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 339 HEFIFPYYGLGQVQLKL-----------------------GDF------RSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~-----------------------g~~------~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1093)
......|..+|..+.-. +.. --+.+++-..++.- .++..|+++|..|++.
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHH
Confidence 11112222222221110 100 11233333333322 1255677787777762
Q ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 001357 390 --------GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 461 (1093)
Q Consensus 390 --------g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~ 461 (1093)
.+...|+..+.+++++..++...|+.||.+-..|++.-|...|-+.+...|. ....|.|+|.++...
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-----~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-----CHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-----chhheeccceeEEec
Confidence 2335788888888888888888888888776667777777777776665444 367788888888888
Q ss_pred CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh----hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh
Q 001357 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF----KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1093)
Q Consensus 462 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1093)
.+++.|...|..+..+.|. .-...+....-.... ..+.+|.--....... ........|+.--.....
T Consensus 864 ~d~E~A~~af~~~qSLdP~-------nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~-gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPL-------NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE-GKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred ccHHHhhHHHHhhhhcCch-------hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc-cccchhhHHHHHHHHHHh
Confidence 8888888888888775432 111222221111111 1112221110000000 011123334444444555
Q ss_pred cCChHHHHH----------HHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------CCChhHHHHhhh
Q 001357 538 IHDTVAASV----------LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGD 601 (1093)
Q Consensus 538 ~g~~~~A~~----------~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 601 (1093)
.|+++.-+. .+.+.+..+|++..+|...|.....++.+..|.....+++.+- ..++.+--.+|.
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gR 1015 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGR 1015 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 565555443 3444556789999999999999999999999988888866542 333447778999
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHH---HH
Q 001357 602 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY---AA 678 (1093)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---a~ 678 (1093)
+++..|.++.|...+...-..... +. .-+.++ .|-. +++.++++.|++++.+...+.. ..
T Consensus 1016 L~lslgefe~A~~a~~~~~~evdE-di-~gt~l~---lFfk------------ndf~~sl~~fe~aLsis~se~d~vvLl 1078 (1238)
T KOG1127|consen 1016 LELSLGEFESAKKASWKEWMEVDE-DI-RGTDLT---LFFK------------NDFFSSLEFFEQALSISNSESDKVVLL 1078 (1238)
T ss_pred hhhhhcchhhHhhhhcccchhHHH-HH-hhhhHH---HHHH------------hHHHHHHHHHHHHhhhcccccchhhhh
Confidence 999999999887776532211111 11 111122 1223 8899999999999987655333 34
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC--CHHHHHHH
Q 001357 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--DAQILLYL 756 (1093)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~l~~l 756 (1093)
-.++++....+.-+.|...+-++....| ....+++.++-++....+-..-....++.... +... .-.--+..
T Consensus 1079 ~kva~~~g~~~~k~~A~~lLfe~~~ls~-----~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~ 1152 (1238)
T KOG1127|consen 1079 CKVAVCMGLARQKNDAQFLLFEVKSLSK-----VQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLK 1152 (1238)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHhCc-----cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHH
Confidence 4556666677888999999999988876 56777888887766544433333333332221 0000 00111233
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
-.+|-+.|+...-.+.++++++.+|+|+.+|-.|..
T Consensus 1153 e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1153 ELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 445667888888999999999999999999998884
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-25 Score=268.26 Aligned_cols=449 Identities=13% Similarity=0.002 Sum_probs=270.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1093)
+..+...+...|++.+|+.+|..+...... ..+..++..+..++...++++.|..++..+.... ..| ...++..+..
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~-~~~~~n~Li~ 166 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEP-DQYMMNRVLL 166 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCc-chHHHHHHHH
Confidence 444444455555555555555555432211 1233455555666666666666666665555421 122 2445556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-hcCCHHHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL-ISSDTGAA 428 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p-~~~~~~~~la~~~-~~~~~~~A 428 (1093)
+|.+.|+++.|..+|+.+.. | +..+|..+...|.+.|++++|+.+|.++....+ .+..++..+...+ ..+....+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 66666666666666665532 2 445666666666666666666666666655432 1233444444444 55666666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1093)
..++..+.+. +...+..+++.+...|.+.|++++|..+|+.+..
T Consensus 244 ~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------- 287 (697)
T PLN03081 244 QQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------------------------------- 287 (697)
T ss_pred HHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--------------------------------
Confidence 5555443332 3333455666666777777777777777665422
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1093)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (1093)
.+..+|..+...|...|++++|..+|.++.... ..+..+|..+...+...|.+++|..++..+++
T Consensus 288 --------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 288 --------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred --------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 245566667777777777777777777665532 12345666666777777777777777777666
Q ss_pred Hc-CCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 001357 588 VN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (1093)
Q Consensus 588 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (1093)
.. +.+..++..+...|.+.|+++.|...|+++.. ++..++..|... |... |+.++|+++|++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~~ 416 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GRGTKAVEMFER 416 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CCHHHHHHHHHH
Confidence 65 44556666777777777777777777776543 355566666666 6666 777777777777
Q ss_pred HHhhCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 667 VIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 667 ~l~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
+...... |..+++.+...+.+.|.+++|..+|+.+.+..+- ..+...|..+..+|.+.|++++|.+++++ .+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~---~p~~~~y~~li~~l~r~G~~~eA~~~~~~----~~ 489 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI---KPRAMHYACMIELLGREGLLDEAYAMIRR----AP 489 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC---CCCccchHhHHHHHHhcCCHHHHHHHHHH----CC
Confidence 7665433 5566666777777777777777777777654321 12345666677777777777777776543 34
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~ 799 (1093)
..++..+|..|..+|...|+.+.|..++++++.+.|++...+..++.+|...+.
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 556666777777777777777777777777777777766666666666555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-24 Score=218.64 Aligned_cols=473 Identities=19% Similarity=0.176 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR--IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
++++.|+.-|..... +.+|+..|+-+++ ..|+....-+.+|.++++..+|.+|+++|+.++..-|.-
T Consensus 202 svl~nlaqqy~~ndm-----------~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi 270 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDM-----------TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI 270 (840)
T ss_pred HHHHHHHHHhhhhHH-----------HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc
Confidence 456666666554443 3489998887764 346777777889999999999999999999999988763
Q ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------
Q 001357 162 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL---------- 226 (1093)
Q Consensus 162 -----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 226 (1093)
...+..+|..+.+.|.|+.|+..|+.++...|+. ..-+++..|++..|+-++-.+.|.+++.+
T Consensus 271 nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi 348 (840)
T KOG2003|consen 271 NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI 348 (840)
T ss_pred chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc
Confidence 4567788888999999999999999999999997 34577889999999999999999999875
Q ss_pred ----CCCcHHHHHHHHHHHHHh---hhHHhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 001357 227 ----DPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1093)
Q Consensus 227 ----~p~~~~a~~~la~~~~~~---~~~~~~~~Al~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1093)
+|++......+-.-.++. .+....++++-.--+.+. +.|+.... -.++-..++.
T Consensus 349 ~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g-----------------~dwcle~lk~ 411 (840)
T KOG2003|consen 349 KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG-----------------CDWCLESLKA 411 (840)
T ss_pred CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc-----------------cHHHHHHHHH
Confidence 222211111111111111 111112223322222221 12222211 1122222222
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCc
Q 001357 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDN 375 (1093)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~ 375 (1093)
....+...+.-.+.+..|.+.|+++.|++++.-.-.. .+.....+-.+|..+++.. .++..|..+...++..+.-+
T Consensus 412 s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn 489 (840)
T KOG2003|consen 412 SQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN 489 (840)
T ss_pred hhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC
Confidence 2222333455677888999999999999998766542 2222233455666666653 47899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001357 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 454 (1093)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 454 (1093)
+.++.+.|.+.+..|++++|.+.|+.++..+.....+++++|..+ .+|+.++|+.+|-+...++.+ +.++++.+
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qi 564 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQI 564 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999998888776 48999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 455 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
+.+|-.+.+..+|++++.++.. .-|.++.++..+|.+
T Consensus 565 aniye~led~aqaie~~~q~~s-------------------------------------------lip~dp~ilskl~dl 601 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANS-------------------------------------------LIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcc-------------------------------------------cCCCCHHHHHHHHHH
Confidence 9999999999999999999887 567899999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHH
Q 001357 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
|-+.|+-.+|.+++-......|.+.++.-+|+..|....-++.|+.+|+++.-+.|+......+++.|+.+.|+|..|..
T Consensus 602 ydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHhHhH
Q 001357 615 TFRAASDATDGKDSYATLSLGNW 637 (1093)
Q Consensus 615 ~~~~~l~~~~~~d~~~~~~l~~~ 637 (1093)
.|+.+-...|. +...+-.|..+
T Consensus 682 ~yk~~hrkfpe-dldclkflvri 703 (840)
T KOG2003|consen 682 LYKDIHRKFPE-DLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHhCcc-chHHHHHHHHH
Confidence 99999888887 55554444433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-23 Score=254.80 Aligned_cols=464 Identities=12% Similarity=0.011 Sum_probs=337.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
..|......+...|++.+|+.+|..+.... +.+..++..+..++.+.+++..|..++..+..........++..+..+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 357777777888888888888888877643 235677777777888888888888888888776533335667777788
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
|.+.|+++.|..+|..+.. | +...|..+...+...|+ +++|+..|.++....+
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~--------------------- 220 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGN---YREAFALFREMWEDGS--------------------- 220 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCC---------------------
Confidence 8888888888888877642 2 44455566666666655 6666666665554321
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
..+..++..+..++...|....+..++..+++.. ......++..+...|.+.|++++|..+|+
T Consensus 221 ---------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 221 ---------------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred ---------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 1123445555556666666666666666655431 12234556677777888888888888777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
.+. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..++..+...+ ..|.++.|..++..+.+. +.
T Consensus 284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~ 356 (697)
T PLN03081 284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GF 356 (697)
T ss_pred hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CC
Confidence 653 3466778888888888888888888888876543 22455666777777 778888888777766553 34
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch
Q 001357 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1093)
Q Consensus 445 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (1093)
..+..+++.+...|.+.|++++|..+|+++.. .+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------------------------------------------~d 390 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------------------------------------------KN 390 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------CC
Confidence 44567788888888888888888888877643 24
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--ChhHHHHhhh
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGD 601 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 601 (1093)
..+|..+...|...|+.++|+.+|+++.... ..+..++..+...+...|..++|..+|+.+.+..+- +...+..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 5678888888888888888888888887643 223567788888888889999999999888765432 3457788888
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001357 602 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681 (1093)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 681 (1093)
++.+.|++++|...++++ ...++...+..|... |... |+++.|...+++++...|.++..+..+
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 899999999999888764 233466777778877 7777 889999999999999999988889999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHh
Q 001357 682 GVVLAEKGQFDVSKDLFTQVQEAA 705 (1093)
Q Consensus 682 a~~~~~~g~~~~A~~~~~~~~~~~ 705 (1093)
+.+|...|++++|..+++.+.+..
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-22 Score=240.78 Aligned_cols=469 Identities=10% Similarity=-0.032 Sum_probs=326.5
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1093)
.-..|..+...+..+.+.++.|++..|+..|+++++.+|.++.+...++.++...|++++|+.++++++...|.. ....
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-~~~l 105 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-SRGL 105 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-HHHH
Confidence 344566677777777777777777777777777777777775444466666667777777777777777222222 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
..+|.++...|+++.|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++.++..
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 3346677777777777777777777777777777766666666666 777777777777777764443 444444444
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC----
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG---- 356 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---- 356 (1093)
.+++.+|+..+++++... |.+...+..+..++...|-...|.+...+--..+ ...+........+.-.++.+
T Consensus 182 ~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 182 TDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred cchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhccccc
Confidence 556655777777777543 5556677777777777777776666554322211 00111111111111111111
Q ss_pred --------CHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 001357 357 --------DFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL 420 (1093)
Q Consensus 357 --------~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~ 420 (1093)
-.+.|+..++.++...|.. ..+..-...++...+++.+++..|+.+.... |--..+....|..|
T Consensus 258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 2355777777777643322 2344455667778899999999999877544 33455777788888
Q ss_pred -hcCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh-hhhcccccchhhhhhhh
Q 001357 421 -ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASA 497 (1093)
Q Consensus 421 -~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 497 (1093)
..+.+.+|+.+|..++.-.+.. ..+........|...|+..+++++|..++.+.....|+ .......
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~---------- 407 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP---------- 407 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC----------
Confidence 8999999999999886643221 11222344567888999999999999999999875442 1111110
Q ss_pred hHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHH
Q 001357 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 577 (1093)
Q Consensus 498 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 577 (1093)
....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.+..
T Consensus 408 -------------------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 408 -------------------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred -------------------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 1115677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCC
Q 001357 578 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (1093)
Q Consensus 578 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d 627 (1093)
|...++.+..++|.+..+...++.+++..++|.+|......++...|...
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999999999999999999999999999998743
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-22 Score=223.02 Aligned_cols=653 Identities=14% Similarity=0.072 Sum_probs=393.3
Q ss_pred HHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 001357 56 VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 135 (1093)
Q Consensus 56 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 135 (1093)
...|...|=+++..++. -...+..||.+|...-... .|.++|.+|..+||.+..++-..+
T Consensus 474 ~~~al~ali~alrld~~---------~apaf~~LG~iYrd~~Dm~-----------RA~kCf~KAFeLDatdaeaaaa~a 533 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS---------LAPAFAFLGQIYRDSDDMK-----------RAKKCFDKAFELDATDAEAAAASA 533 (1238)
T ss_pred HHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhcCCchhhhhHHHHH
Confidence 66666766666655431 2457788888887654322 678888888888877766665555
Q ss_pred HHHHHcCCHHHHHH------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001357 136 QLLLAKGEVEQASS------------------------------------AFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1093)
Q Consensus 136 ~~~~~~g~~~~A~~------------------------------------~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1093)
..|....+++.|.. .|+.++..+|.+..+|.++|.+|...|.|.
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence 55555555555544 455555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh-------h----HH
Q 001357 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-------E----AA 248 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~-------~----~~ 248 (1093)
.|++.|.++..++|.+ ....+..+.+...+|.+.+|+..+...+............++.++++.- - ..
T Consensus 614 ~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred hHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5555555555555555 3444445555555555555555555544443333333333333332221 1 01
Q ss_pred hHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChH--H---------------------------HHHHHHHHHhcc
Q 001357 249 GIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHF--L---------------------------VEQLTETALAVT 298 (1093)
Q Consensus 249 ~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~--~---------------------------A~~~~~~al~~~ 298 (1093)
-++++++.|.-++... -.+...|..++..+...-..+ . +.+.+-..++.
T Consensus 693 ~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl- 771 (1238)
T KOG1127|consen 693 FFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL- 771 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-
Confidence 1222333332222222 222223333322211110000 0 11111111111
Q ss_pred CCCCCchHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 299 NHGPTKSHSYYNLARSYHS--------KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
...+..|+++|..|+. +.+...|+.++.++++. ..++...|..||.+ ...|++.-|..+|-+.+.
T Consensus 772 ---~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 772 ---AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred ---hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 1124567778777766 22345688888888873 34455667777777 666888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001357 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1093)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1093)
..|.+...|.++|.++....+++-|...|.++..++|.+...|...+.+. ..|+.-+++..+.....+....+......
T Consensus 845 sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 845 SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 88888888888888888888888888888888888888888888888888 78887777777766555544444444566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001357 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1093)
Q Consensus 450 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 529 (1093)
.+.+....+...|+++.-+..-.++-.... .++ .....+|....++.
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~------------------------al~---------~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASL------------------------ALS---------YYFLGHPQLCFAYA 971 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHH------------------------HHH---------HHHhcCcchhHHHH
Confidence 777777777888887776666555433110 000 01115678899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-HHHHhhhh
Q 001357 530 NLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-ALSMLGDL 602 (1093)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~ 602 (1093)
..|.....++.+..|...+.+++.. ...+..+.-.+|.+++..|.++.|...+... |.... -.......
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~----~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE----WMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc----chhHHHHHhhhhHH
Confidence 9999999999999999999887642 1233446777889999999999776544321 11111 01111122
Q ss_pred hhcccchHHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001357 603 ELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681 (1093)
Q Consensus 603 ~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 681 (1093)
.+..+++.++...|++++.+..+ .+...++.-+.+.-... +.-+.|...+-+++...|.....+..+
T Consensus 1048 lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~------------~~k~~A~~lLfe~~~ls~~~~~sll~L 1115 (1238)
T KOG1127|consen 1048 LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA------------RQKNDAQFLLFEVKSLSKVQASSLLPL 1115 (1238)
T ss_pred HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc------------ccchHHHHHHHHHHHhCccchhhHHHH
Confidence 26678999999999999997654 23333322222212222 677889999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001357 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1093)
Q Consensus 682 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~ 761 (1093)
+.++.-..+-.....+.++......... -+...-+..-.+|..+|+-....+.+++++-. .|.++.+|..|..-|.
T Consensus 1116 ~A~~ild~da~~ssaileel~kl~k~e~--~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1116 PAVYILDADAHGSSAILEELEKLLKLEW--FCWPPGLLKELIYALQGRSVAVKKQIQRAVHS--NPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhHH--hccChhHHHHHHHHHhhhhHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 8888766555444444444443321000 01122234456788899999999999999876 5666777776664222
Q ss_pred hh-c-------------cHHHHHHHHHHHHHhCCCCcchhhHH
Q 001357 762 EA-E-------------QWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1093)
Q Consensus 762 ~~-g-------------~~~~A~~~~~~al~~~P~~~~~~~~l 790 (1093)
.. + .+..-++..++++.+.|.|+.++-.|
T Consensus 1192 ~~n~~n~v~a~~~~k~y~~t~~l~~iQ~a~~L~Pwd~a~wkaL 1234 (1238)
T KOG1127|consen 1192 QRNAKNGVVANHGKKAYLYTAVLKTIQKAALLSPWDPAIWKAL 1234 (1238)
T ss_pred HHhccCCeehhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 11 1 12234566788889999998877655
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-24 Score=218.40 Aligned_cols=480 Identities=18% Similarity=0.189 Sum_probs=303.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~ 202 (1093)
.+++.++..|.....+.+|+..|+-+++. .|+....-+.+|.++++..+|.+|+++|+.++..-|... ..+..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788999999999999999999988753 577777888999999999999999999999999888763 344567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC--------------CCcH
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 268 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~--------------p~~~ 268 (1093)
+|..+.+.|.|+.|+..|..+++..|+.. +-+.|..+++..|+ .++-.+.|.+++.+- |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 89999999999999999999999999554 45667778888888 666666677776542 1111
Q ss_pred HHHHHHHH-HH--HHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhH
Q 001357 269 MALNYLAN-HF--FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1093)
Q Consensus 269 ~~~~~la~-~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1093)
.+-..+-. ++ +...+-..|.+..-.+.+... |.. .-+|.-.-.+.-..++.....+.....-
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi-------------~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVI-------------APDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 11111111 00 011111112222222221110 000 0000001111111111100112222233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~ 421 (1093)
.+.+..+++.|+++.|++++.-.-+.+... ..+-.+|..+++.+| ++..|..+-..++.++.-++.+..+.|.+. .
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 455666777777777777766554443222 223344444444432 667777777777777777777777777765 7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
.|++++|...|+.++..... -.+.++++|..+-.+|++++|+.+|-+...+
T Consensus 503 ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i------------------------ 553 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI------------------------ 553 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------------------------
Confidence 77777777777776654322 2567777777777777777777777665442
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
--+++.+++.++.+|..+.+..+|+++|.++...-|+++..+..|+.+|-+.|+-.+|..+
T Consensus 554 -------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 554 -------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred -------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 1236667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 582 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
+-......|-+.++.-.++..|+...-+++|+.+|+++.-..|....+. +.++.+ +... |+|.+|+
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq-lmiasc-~rrs------------gnyqka~ 680 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ-LMIASC-FRRS------------GNYQKAF 680 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH-HHHHHH-HHhc------------ccHHHHH
Confidence 7777777777777777777777777777777777777665555422222 223333 4444 7777777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 001357 662 ELYTRVIVQHTSNLYAANGAGVVLAEKG 689 (1093)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g 689 (1093)
..|+..-...|.+...+-.|..+....|
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 7777777777777766666665555444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-22 Score=240.84 Aligned_cols=440 Identities=12% Similarity=-0.004 Sum_probs=352.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|++|+.+|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34449999999999999999755558889999999999999999999944455566666668899999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
++..+|++ +.+++.++.++...++.++|+..+.+++..+|.+... ..++.++...++ ..+|+..+++++..+|.+
T Consensus 128 aL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 128 SLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCCC
Confidence 99999999 7778899999999999999999999999999986554 445555544444 666999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc---------C---CHHHHHHHHHHHHHhc
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASVKEI 335 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~al~~~ 335 (1093)
..++..+...+...|-...|.++...--..... ..........+.-..+. . -.+.|+..+...+...
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998887753321110 00001111111111111 1 2456777777777644
Q ss_pred CCCCC----chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Q 001357 336 NKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP--- 407 (1093)
Q Consensus 336 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p--- 407 (1093)
+..|. ...+....-.++...|++.+++..|+.+.... |--..+....|..|...++.++|+.+|..++...|
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 44343 23455667778889999999999999987554 32456888899999999999999999999987652
Q ss_pred ---CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 408 ---RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-A---------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (1093)
Q Consensus 408 ---~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 473 (1093)
.+......|...+ ..+++++|..++.+.....|- . +.+.-......++.++...|++.+|...+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344456677777 999999999999998875441 0 1111246777789999999999999999999
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001357 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1093)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1093)
.+. ..|.+..+...+|.++...|.+..|...++.+..
T Consensus 442 l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 442 LSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 988 5688999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHH
Q 001357 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (1093)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 596 (1093)
.+|++..+...++.++..++++.+|......++...|+++.+.
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999998654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=214.69 Aligned_cols=509 Identities=14% Similarity=0.123 Sum_probs=347.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
+..+-+-+..+.+|.-|+-+-+++..+. .++.+ .+.+|.|++-.|++..|......- .+...+..+.+..+.++...
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d-~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT-NDPAD-IYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHH-HHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHH
Confidence 3444445566777888888888877666 33233 456788888888877777666554 45555666666777777776
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001357 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1093)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1093)
.+ ++.|+.++.+. ... .++..+.. .+ + +......+..
T Consensus 96 k~---~~~al~vl~~~-~~~-~~~f~yy~-----------------------------~~--~----~~~l~~n~~~--- 132 (611)
T KOG1173|consen 96 KE---WDQALLVLGRG-HVE-TNPFSYYE-----------------------------KD--A----ANTLELNSAG--- 132 (611)
T ss_pred HH---HHHHHHHhccc-chh-hcchhhcc-----------------------------hh--h----hceeccCccc---
Confidence 66 66666665543 100 00000000 00 0 0000000000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Q 001357 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA-A 403 (1093)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~-l 403 (1093)
... .........+..|.+|....+.++|...|..++..++.+.+++..+....+-.-+ +-..++... +
T Consensus 133 -~~~--------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~--Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 133 -EDL--------MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQ--EEFELLESLDL 201 (611)
T ss_pred -ccc--------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchh--HHHHHHhcccH
Confidence 000 0111123345566666667777777777777777666666665555444332210 111111110 0
Q ss_pred H-hCCCCHHHHHHHHHHHhcCCHH-HHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001357 404 K-IDPRDAQAFIDLGELLISSDTG-AALDAF--KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 404 ~-~~p~~~~~~~~la~~~~~~~~~-~A~~~~--~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
. ....+....-.+-.+.....+. .++..- .... +...+..++...+..++..++|.+...++...+..
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~------~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-- 273 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI------GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-- 273 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh------hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--
Confidence 0 0011111111111111000000 000000 0011 11224678888899999999999999999999884
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh
Q 001357 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT-VLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1093)
.|-... .-+.+| ++...|+..+-..+-.+++..+|+.
T Consensus 274 -----------------------------------------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 274 -----------------------------------------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred -----------------------------------------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCC
Confidence 333333 444555 8888899888888888999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHH
Q 001357 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 638 (1093)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~ 638 (1093)
+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+.-.|..++|+..|..+.+..+. .....+.+|.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgme- 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGME- 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999998776 22233346655
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC--CCchhH
Q 001357 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF--VQMPDV 716 (1093)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~ 716 (1093)
|..+ ++++-|.++|.+++.+.|.++..++-+|.+....+.+.+|..+|+.++..-+.... +.....
T Consensus 390 y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 390 YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 8888 99999999999999999999999999999999999999999999999955432111 124567
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 001357 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (1093)
Q Consensus 717 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 796 (1093)
+.||||+|.+++.+.+|+..|++++.. .+.++.++..+|.+|...|+++.|+..|.+++-+.|+|..+.--|..++..
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999998 778899999999999999999999999999999999997666666655444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-22 Score=213.67 Aligned_cols=458 Identities=15% Similarity=0.138 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
+..|.-|+-+-+++..+. .+|.-.+.+|++++..|+|..|..+...- .....+..+.+..+.++....+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888899999999999999998887765 5566788999999999999999999999988
Q ss_pred HH------HHhCCCC------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.. +..+|.+ ...+++..|.+|..+.+.++|+..|..++..++.+.++...+....+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 32 1111111 12345667888999999999999999999999999988877766555
Q ss_pred HhhhHHhHHHHHHHHHHH-HH-hCCCcHHHHHHHHHHHHHcCChHHHHHHHH-HHHhccCCCCCchHHHHHHHHHHHhcC
Q 001357 243 QANEAAGIRKGMEKMQRA-FE-IYPYCAMALNYLANHFFFTGQHFLVEQLTE-TALAVTNHGPTKSHSYYNLARSYHSKG 319 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~a-l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1093)
.... +-...+... +. ....+...+..+-.+.......+....... ..+ .....+.......+..++..+
T Consensus 187 lt~~-----Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl---~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 187 LTAQ-----EEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL---IGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred cchh-----HHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh---hhhhhcHHHHHHHHHHHHHcC
Confidence 4421 111111110 00 000111111111111000000000000000 000 011234567777888888889
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
+|.+..+.+...+.. .|-+..++.....++...|+..+-..+-.+++..+|+.+..|+.+|..|...|++.+|..+|
T Consensus 259 ~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 259 RFKECLKITEELLEK---DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred hHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 999999888888873 44444444333338888888888888888888889999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
.++..++|....+|+.+|..+ ..+..++|+..|..|.++++.. ..-...+|.-|...+++..|..+|.+|+.
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-----hlP~LYlgmey~~t~n~kLAe~Ff~~A~a-- 408 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-----HLPSLYLGMEYMRTNNLKLAEKFFKQALA-- 408 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-----cchHHHHHHHHHHhccHHHHHHHHHHHHh--
Confidence 999999999999999999988 8888899999999888887763 22244578888888999999999999888
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC--
Q 001357 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-- 556 (1093)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-- 556 (1093)
+.|.++.++..+|.+....+.+.+|..+|+.++..-+
T Consensus 409 -----------------------------------------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 409 -----------------------------------------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred -----------------------------------------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 4577888888889888888899999999888884221
Q ss_pred -----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 557 -----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 557 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.....+.+||.++.+++.+.+|+.++++++.+.|.++.++..+|.+|..+|+++.|+..|.+++.+.|.
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 234568888999999999999999999999999999999999999999999999999999999888876
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-19 Score=194.34 Aligned_cols=444 Identities=15% Similarity=0.154 Sum_probs=289.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..++..+.-.+..++|...++..+.+++..|.++..+...|..+...|+-++|..+...++..++.+ ...|..+|.++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~R 86 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHHh
Confidence 4566666667777778888888888888778887777777877778888888888888777777777 566777787777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 001357 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1093)
...+|++|+.+|..|+.+.|+|...|.-++.+..+.++ ++-....-.+.++..|.....|..++..++..|++..|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888777777777777 777777777777777777777777777777788887777
Q ss_pred HHHHHHHhccCCCCC-----chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHH
Q 001357 289 QLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (1093)
Q Consensus 289 ~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (1093)
.+.+...+.....+. ...+...........|.+++|++.+..--. ..-+........+.++++.+++++|+.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 777777655432222 234555667777788888888887765443 112233345567888999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 364 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
.|...+..+|++...+..+-.++....+.-+++ ..|...-+..|.. .....++... ...++...+ .+.+...-.
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~v---dkyL~~~l~ 316 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIV---DKYLRPLLS 316 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHH---HHHHHHHhh
Confidence 999999999999888888777775333334444 4555444433332 2222333322 222222222 222221111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC------
Q 001357 442 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG------ 515 (1093)
Q Consensus 442 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 515 (1093)
.+. +.+..++-.+|-.-. . ..++++.+. ++...+...+
T Consensus 317 Kg~---p~vf~dl~SLyk~p~---k-~~~le~Lvt-----------------------------~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 317 KGV---PSVFKDLRSLYKDPE---K-VAFLEKLVT-----------------------------SYQHSLSGTGMFNFLD 360 (700)
T ss_pred cCC---CchhhhhHHHHhchh---H-hHHHHHHHH-----------------------------HHHhhcccccCCCccc
Confidence 111 122222222221111 1 112222221 1111111100
Q ss_pred -CCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh
Q 001357 516 -NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1093)
Q Consensus 516 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 594 (1093)
...+.+......++.++.-+...|+++.|..+...++...|..++.|...|.++...|++++|..++..+.+++-.+..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 0011223345566777888899999999999999999999999999999999999999999999999998888766655
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHh
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAA 619 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (1093)
+-.--+...++.++.++|..+..+.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHh
Confidence 5555666666666666666665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=220.06 Aligned_cols=312 Identities=21% Similarity=0.250 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
..+.++..+|..|..+... +..+|+..|.+.....++-..++..+|..|+..++|++|..+|+.+-...|-
T Consensus 315 ~l~~llr~~~~~~~~~s~y---------~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQY---------NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566667777777665443 3568999999976667777777888999999999999999999999999987
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
.....-....++....+--+---+.+.++..+|+. +..|..+|.||..+++++.|+.+|+++++++|+...++..+|.=
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77766667777777777665556667778888888 77899999999999999999999999999999999999999988
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1093)
+....+ ++.|+.+|+.++..+|.+..+|+.+|.+|.++++++.|+-.|.+|+.. +|........+|.++.+.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhh
Confidence 888777 999999999999999999988888888888888888888888888854 46777788888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
.++|+.+|++|+. .+|..+.+.+..|.+++..+++++|+..++++-..-|+...+++.+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 8888888888887 5677777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHH
Q 001357 401 KAAKIDPRDAQ 411 (1093)
Q Consensus 401 ~~l~~~p~~~~ 411 (1093)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 88888876544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-20 Score=190.60 Aligned_cols=446 Identities=16% Similarity=0.177 Sum_probs=350.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh--------hhHhHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK--------QREKEEHFIL 112 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~--------~~~r~~~~~~ 112 (1093)
..-+.+|..|+....++.|.-.|+...+.- .. .+.....+.. |..... ..........
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~k--~~----------FL~lysk~La--~~kk~~e~~~~~l~~~~~~~~~~~ 144 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSKK--SA----------FLRLYSKYLA--GEKKSEEEMAELLGRLESFSRINS 144 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchHH--HH----------HHHHHHHHHh--hhHHHHHHHHHhhccchhhhhhhh
Confidence 356889999999999999999998764421 11 1111111111 110000 0001111123
Q ss_pred HHHHHHHHHhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 113 ATQYYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 113 A~~~~~~a~~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
.+..+++-+.. ...|+..++..|.++-..|....|+..|..++...|-+..+|..++.+... +......
T Consensus 145 ~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l 217 (559)
T KOG1155|consen 145 ELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSIL 217 (559)
T ss_pred HHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHH
Confidence 33333333322 234677888999999999999999999999999999999999999876532 3333334
Q ss_pred HHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 189 l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
....|.+ ....-+.++.++..+...++++.-++..+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|.
T Consensus 218 ~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPY 294 (559)
T KOG1155|consen 218 VVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPY 294 (559)
T ss_pred HhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCC
Confidence 4334432 2333455788888888999999999998887 78888888888888888888 99999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHH
Q 001357 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1093)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1093)
...-+-.+.++++-..+-.+..-+...+.... .-.++++..+|..|...++.++|+.+|+++++ .+|....+|.
T Consensus 295 Rl~dmdlySN~LYv~~~~skLs~LA~~v~~id---KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWT 368 (559)
T KOG1155|consen 295 RLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID---KYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWT 368 (559)
T ss_pred cchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc---cCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHH
Confidence 88888888888888877766666666666544 44568889999999999999999999999998 7889999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (1093)
.+|.-|+.+.+...|+..|+.+++++|.+..+|+.+|+.|.-++...=|+-+|++++...|+++..|..||.+| ..++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
++|++.|..++..... ...++..+|.+|-+.++..+|..+|.+.+.....
T Consensus 449 ~eAiKCykrai~~~dt-----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~------------------------- 498 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGDT-----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL------------------------- 498 (559)
T ss_pred HHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------------------------
Confidence 9999999999886322 4689999999999999999999999998873210
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 001357 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (1093)
.....+....+...|+..+.+.+++++|..+...++.-.+.
T Consensus 499 -----------eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 499 -----------EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred -----------hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 00134556667777999999999999999888877765443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-20 Score=194.66 Aligned_cols=364 Identities=17% Similarity=0.097 Sum_probs=296.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNY 273 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~ 273 (1093)
.+..++..|.++...|....|+..|..++...|-+..+|..|+.+...... .......-| .+.+.-..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----------~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----------LSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----------HHHHHhcCcccchHHHHHH
Confidence 367788899999999999999999999999999999999999876544322 222222233 34455556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1093)
+..++....+.+++..-....... ..|.....-...|.+.+...++++|+..|+...+ .+|-...-.-.+..+++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHHHHhHHHH
Confidence 677777777777777777766653 2456667777888999999999999999999988 45554444455556666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH
Q 001357 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF 432 (1093)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~ 432 (1093)
-..+-.+-.-+...+..++.--+++...+|.-|...++.++|+.+|+++++++|....+|..+|.-| ...+...|+..|
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 5555555555556677777777889999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001357 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1093)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (1093)
+.|+++.|. +...|+.+|..|.-++...=|+-+|++|..
T Consensus 388 RrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~------------------------------------ 426 (559)
T KOG1155|consen 388 RRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE------------------------------------ 426 (559)
T ss_pred HHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh------------------------------------
Confidence 999998776 588999999999999999999999999988
Q ss_pred cCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q 001357 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV---- 588 (1093)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 588 (1093)
..|.+..+|..+|.||.++++.++|+..|..++.....+..+++.||.+|...++..+|..+|.+.+..
T Consensus 427 -------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 427 -------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred -------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999999999999999999988888899999999999999999999999998883
Q ss_pred ---cCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 589 ---NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 589 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
.|....+...|+..+.+.+++++|..+...++.-
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3555667788999999999999998877766554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-21 Score=203.43 Aligned_cols=259 Identities=17% Similarity=0.194 Sum_probs=182.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~ 424 (1093)
.-.+|...++..++..|+..|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++.......-+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI-------- 297 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI-------- 297 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH--------
Confidence 4456666666666666666666666666 5666666666666666666666666555443322111111110
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001357 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1093)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1093)
...+..+|..|...++++.|+.+|.+++....
T Consensus 298 -----------------------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R------------------------- 329 (539)
T KOG0548|consen 298 -----------------------AKALARLGNAYTKREDYEGAIKYYQKALTEHR------------------------- 329 (539)
T ss_pred -----------------------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-------------------------
Confidence 22333367778888999999999998876210
Q ss_pred hhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1093)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (1093)
. ..++......++++.......-.+|.-..-...-|..++..|+|..|+..|.+
T Consensus 330 -------------------t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 330 -------------------T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred -------------------C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 1 33444555667777777776667777766666778888888889999988888
Q ss_pred HHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 001357 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664 (1093)
Q Consensus 585 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 664 (1093)
++..+|+++.++.+.+.||.++|.+..|+...+.++++.|. ..-+++.-|.+ ++.+ .+|++|++.|
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay 449 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAY 449 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHH
Confidence 88888888888888888888888888888888888888765 66677777777 7777 8899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 001357 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700 (1093)
Q Consensus 665 ~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 700 (1093)
+.+++.+|++..+..++..++..+........+.++
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999998888888887777755444444445544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-18 Score=190.95 Aligned_cols=414 Identities=20% Similarity=0.182 Sum_probs=325.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 313 RSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1093)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1093)
.++.-..+.++++-.....+.... .-......|-.+...+...|++..+.+.|++++...-...+.|+.++.+|...|
T Consensus 292 es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag 371 (799)
T KOG4162|consen 292 ESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG 371 (799)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc
Confidence 334444455555554444333211 122345567778888999999999999999999877777899999999999999
Q ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC----
Q 001357 391 QIEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG---- 462 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g---- 462 (1093)
....|+.+++..+... |+++..+...+.++ ..+..++++.+..+++...........+..+..+|.+|..+-
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 9999999999999988 88888888888877 889999999999999997655445556778888888876542
Q ss_pred -------CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 463 -------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 463 -------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
...++++.+++++. ..|.++.+.+.++.-|
T Consensus 452 ~~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lalq~ 488 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLALQY 488 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHHHH
Confidence 24456666666666 5678889999999999
Q ss_pred HhcCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHH
Q 001357 536 EQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
...++...|.....+++..++ +.+.+|..++.++...+++.+|+.+...++.-.|.|.........+....++.++|+.
T Consensus 489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence 999999999999999999955 5689999999999999999999999999999999876665555555555566665555
Q ss_pred HHHHhhhcCC--------------------------------------------------------------CCCh----
Q 001357 615 TFRAASDATD--------------------------------------------------------------GKDS---- 628 (1093)
Q Consensus 615 ~~~~~l~~~~--------------------------------------------------------------~~d~---- 628 (1093)
.+...+.... .++.
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 5444332111 0000
Q ss_pred --HHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001357 629 --YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 629 --~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (1093)
..++..+.. |... ++.++|..++.++-..+|..++.++..|.++...|+..+|...|..++..+|
T Consensus 649 ~~~lwllaa~~-~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 649 LQKLWLLAADL-FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred HHHHHHHHHHH-HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 011111222 2222 7778888888888889999999999999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCHHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 001357 707 GSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 707 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 784 (1093)
+++.+...+|.++.+.|+..-|.. ++..+++. ++.++++|++||.++.+.|+...|..+|.-++++.+.+|
T Consensus 716 -----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 716 -----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred -----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 778889999999999998888888 89999988 778899999999999999999999999999999999888
Q ss_pred chhhH
Q 001357 785 TLRFD 789 (1093)
Q Consensus 785 ~~~~~ 789 (1093)
...|.
T Consensus 789 V~pFs 793 (799)
T KOG4162|consen 789 VLPFS 793 (799)
T ss_pred ccccc
Confidence 76654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-18 Score=181.13 Aligned_cols=482 Identities=17% Similarity=0.190 Sum_probs=332.5
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
..|+..++.+.-+...|+..|.--..++++..|..+|+++|..+..+...|+..+.+-++......|..++.+++..-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44555666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
. ...|+....+--.+|+...|+++|++.+...| +..+|......-+..++ ++.|...|++.+-.+|+ ...|...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~-v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHPK-VSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheeccc-HHHHHHH
Confidence 8 77889889999999999999999999999999 56788888888888777 89999999998887764 4566666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1093)
+..-...|+...+..+|+.++............+...|..-..+..++.|.-+|.-+++.+|.+.. ...+-.+...--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHH
Confidence 777777777777777777777655444444444555555555666666666666666664332110 1111111111122
Q ss_pred cCCH---HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHH
Q 001357 355 LGDF---RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (1093)
Q Consensus 355 ~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~ 430 (1093)
-|+. +.++.. +-.--|++.+..+|-+.++|+.+..+. ..|+.+.-.+
T Consensus 293 fGd~~gIEd~Iv~-----------------------------KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 293 FGDKEGIEDAIVG-----------------------------KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred hcchhhhHHHHhh-----------------------------hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 2221 122110 011123444444555555555555544 4455555555
Q ss_pred HHHHHHHHHHhcCCCCC----HHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 431 AFKTARTLLKKAGEEVP----IEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 431 ~~~~a~~~~~~~~~~~~----~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
.|++++...|....... ..+|.+.+. .-+...+.+.+..+|+.++++-|..
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk------------------------ 399 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK------------------------ 399 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc------------------------
Confidence 55555443332111100 112222221 2235577888888888888754321
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
.-..+.+|...|.....+.+...|..++-.++..+|.+ ..+-....+-.++++++.+..+|++.
T Consensus 400 ---------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 400 ---------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred ---------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12356788888888888999999999999999999975 45555566677889999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1093)
+...|.+..+|...|.+-..+|+++.|..+|.-+++.... +..-++ ... |... ..+.|.+++|..+|+
T Consensus 464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpell--wka-YIdF--------Ei~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELL--WKA-YIDF--------EIEEGEFEKARALYE 531 (677)
T ss_pred HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHH--HHH-hhhh--------hhhcchHHHHHHHHH
Confidence 9999999999999999999999999999999998876433 333332 222 3322 112377888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHH
Q 001357 666 RVIVQHTSNLYAANGAGVVL 685 (1093)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~ 685 (1093)
++|...+... +|...|..-
T Consensus 532 rlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 532 RLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHhcccch-HHHhHHHHh
Confidence 8888776544 555544443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=215.38 Aligned_cols=300 Identities=20% Similarity=0.126 Sum_probs=223.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIG 204 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la 204 (1093)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+++.++...+.. ...++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999998854332 125678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF 279 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~ 279 (1093)
.+|...|+++.|+..|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+.. .+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 99999999999988776532 3445666667
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHcCCH
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 358 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~ 358 (1093)
..|++++|+.++.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 7777777777777766543 344566666777777777777777777776652 2222 34455666677777777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h--cCCHHHHHHHHHHH
Q 001357 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKTA 435 (1093)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~a 435 (1093)
++|+..+++++...|+... +..++.++...|++++|+..|.+++...|++......+...+ . .|+..+++..++++
T Consensus 266 ~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 7777777777766665433 366677777777777777777777776666654443343333 1 34566666666655
Q ss_pred HH
Q 001357 436 RT 437 (1093)
Q Consensus 436 ~~ 437 (1093)
++
T Consensus 345 ~~ 346 (389)
T PRK11788 345 VG 346 (389)
T ss_pred HH
Confidence 54
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=214.45 Aligned_cols=292 Identities=20% Similarity=0.200 Sum_probs=177.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1093)
.+-+..+|+.+|.+.....++...++..+|..||.+++|++|..+|+.+-+..|-.. .-.-....++|++.+.-+--.+
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv-~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV-KGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHHHHhhHHHHHH
Confidence 334556666666665555555566666666666666666666666666666666542 1122244455555544444444
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 001357 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1093)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1093)
-+..+..+|+.+..|..+|.++..+++ ++.|+++|++++.++|...
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkd---h~~Aik~f~RAiQldp~fa------------------------------- 455 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKD---HDTAIKCFKRAIQLDPRFA------------------------------- 455 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhH---HHHHHHHHHHhhccCCccc-------------------------------
Confidence 455555666666666666666666665 6666666666666666555
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001357 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1093)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1093)
.+|..+|.-+.....++.|..+|+.++. .+|....+|+++|.+|.++++++.|.-.|++++.++|.+....
T Consensus 456 ------YayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 456 ------YAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred ------hhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence 4555555555555666666666666665 4555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001357 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1093)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 458 (1093)
..+|.++.+.|+.++|+.+|++++.++|.++-..+..+.++ ..+++.+|+..+++...+.|+ ...+++.+|.+|
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-----es~v~~llgki~ 601 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-----ESSVFALLGKIY 601 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-----hHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666 666666666666666665554 255666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcchh
Q 001357 459 FEKGEFESAHQSFKDALGDGIW 480 (1093)
Q Consensus 459 ~~~g~~~~A~~~~~~al~~~~~ 480 (1093)
.+.|+.+.|+..|.-|..+.|.
T Consensus 602 k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHccchHHHHhhHHHhcCCCc
Confidence 6666666666666666665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-20 Score=211.58 Aligned_cols=299 Identities=15% Similarity=0.096 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 001357 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--- 161 (1093)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--- 161 (1093)
..+.+|..+...|... +|+..|.+++..+|.++.+++.+|.++...|++++|+..++.++...+..
T Consensus 37 ~~y~~g~~~~~~~~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 105 (389)
T PRK11788 37 RDYFKGLNFLLNEQPD-----------KAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ 105 (389)
T ss_pred HHHHHHHHHHhcCChH-----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH
Confidence 3444566666666555 89999999999999999999999999999999999999999998754332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHH
Q 001357 162 -VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALV 235 (1093)
Q Consensus 162 -~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~ 235 (1093)
..++..+|.++...|++++|+.+|.+++...|.. ..++..++.++...|++++|+..|.+++...|.+. ..+.
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3578899999999999999999999999998887 67789999999999999999999999999888753 2456
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1093)
.++.++...|+ +.+|+..|.++++.+|.+..++..++.++...|++++|+.++.+++...+ .....++..++.+|
T Consensus 185 ~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~l~~~~ 259 (389)
T PRK11788 185 ELAQQALARGD---LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--EYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHhCCC---HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--hhHHHHHHHHHHHH
Confidence 78888888888 99999999999999999999999999999999999999999999996532 22346678899999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ--LGQIE 393 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~ 393 (1093)
...|++++|+..+.+++.. .|+.. .+..++.++...|++++|+..|+++++.+|++..+...++..+.. .|+..
T Consensus 260 ~~~g~~~~A~~~l~~~~~~---~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE---YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccch
Confidence 9999999999999999974 34443 448899999999999999999999999999887666555544432 45888
Q ss_pred HHHHHHHHHHH
Q 001357 394 KAQELLRKAAK 404 (1093)
Q Consensus 394 ~A~~~l~~~l~ 404 (1093)
+++..++++++
T Consensus 336 ~a~~~~~~~~~ 346 (389)
T PRK11788 336 ESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHH
Confidence 99988888775
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=193.94 Aligned_cols=435 Identities=18% Similarity=0.167 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.|+|..|+.+|..++.++|.+...+.++..+|...|+|++|+..-.+.+.++|+.+.+|..+|..++-.|+|++|+..|.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 45566888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
+.|..+|++ ..+..+++.++.-. +. +...| ..+..|..++..-....- -.+.+...+...+..+|.
T Consensus 95 ~GL~~d~~n-~~L~~gl~~a~~~~--~~-~~~~~--------~~p~~~~~l~~~p~t~~~--~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 95 EGLEKDPSN-KQLKTGLAQAYLED--YA-ADQLF--------TKPYFHEKLANLPLTNYS--LSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHhhcCCch-HHHHHhHHHhhhHH--HH-hhhhc--------cCcHHHHHhhcChhhhhh--hccHHHHHHHHHhhcCcH
Confidence 888888888 66677777666111 10 00000 122222222211111100 012222223333333333
Q ss_pred cHHHHHH-------HHHHHHHcCChHHHHHHHHHHHhccCCCC---------C------------chHHHHHHHHHHHhc
Q 001357 267 CAMALNY-------LANHFFFTGQHFLVEQLTETALAVTNHGP---------T------------KSHSYYNLARSYHSK 318 (1093)
Q Consensus 267 ~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~------------~~~~~~~la~~~~~~ 318 (1093)
+...+.. ++.+. |........-..........| . .....-.+|...+..
T Consensus 161 ~l~~~l~d~r~m~a~~~l~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLK---GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred hhhcccccHHHHHHHHHHh---cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3222111 11110 000000000000000000000 0 123456789999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCC
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-------ETLKALGHIYVQLGQ 391 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~ 391 (1093)
.++..|++.|..++. .. ....-+.+.+.+|+..|.+...+..+..+++...... .++..+|..|...++
T Consensus 238 k~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 238 KDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 999999999999997 33 4555678899999999999999999999887654332 334446667777889
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
++.|+.+|.+++..... ..++ .....++++.......-+.|.. ..-...-|..++..|+|..|+..
T Consensus 314 ~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHHHhccCHHHHHHH
Confidence 99999999998765433 2233 3344455555444433332321 34445569999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1093)
|.+++. ..|.+...+.|.|.||..+|.+..|+...+.
T Consensus 381 YteAIk-------------------------------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 381 YTEAIK-------------------------------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHh-------------------------------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999998 5689999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 551 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 551 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
+++++|+...+|++-|.++....+|+.|+..|++++..+|.+.++...+..+...+..........++
T Consensus 418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999888888887654333333344444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-19 Score=179.30 Aligned_cols=345 Identities=18% Similarity=0.185 Sum_probs=274.8
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
.+|.+..-.+.+|..++..|++..|+..|..++..+|++..+++..|.+|..+|+-.-|+..+.+++.+.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3466777889999999999999999999999999999999999999999999999999999999999999999 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
.|.+++++|.++.|..-|..++..+|++... ...++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 9999999999999999999999999965432 2222211100
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHH
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1093)
..+......++..|++..|+.+....+. ..|..+..+...+.||...|...
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1122223345566788888888888887 56777777888899999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001357 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 439 (1093)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-. |++..++.
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----------------YKklkKv~ 270 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----------------YKKLKKVV 270 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----------------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987554422 22222211
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcC
Q 001357 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (1093)
Q Consensus 440 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 519 (1093)
+. ..-+......++|.+++...++.+...|.
T Consensus 271 K~----------les~e~~ie~~~~t~cle~ge~vlk~ep~--------------------------------------- 301 (504)
T KOG0624|consen 271 KS----------LESAEQAIEEKHWTECLEAGEKVLKNEPE--------------------------------------- 301 (504)
T ss_pred HH----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------
Confidence 11 01122344567788888888888874221
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 598 (1093)
..+......-.+..|+..-+++.+|+..+.+++..+|+++.++...+..|+....|+.|+.-|+++...++++..+...
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 1122333444566788888999999999999999999999999999999999999999999999999999998776544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-19 Score=194.58 Aligned_cols=437 Identities=17% Similarity=0.139 Sum_probs=337.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1093)
+++.+|-.+...+...|++..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |.++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 6778888889999999999999999999998877788999999999999999999999999999988 77767777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
..|+-..+..++++.+..+++...- -.+.++..+|.+|...-. .....++++.++++++.+|.|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 7888899999999999999998431 135567777777755422 123678999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1093)
.++++.-|...++...|......++...+ ...+.+|..++.++...+++..|+.+...++...+ .+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hhhhhchhhhh
Confidence 99999999999999999999999998743 34568999999999999999999999999998543 33334455556
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---------HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~- 420 (1093)
+-...++.++|+..+...+........+-..++ .+....++..+|...+.++... ...-
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-----------~a~~~ 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-----------VASQL 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-----------HHhhh
Confidence 666789999999999888876543333333333 1111111222222222222111 0000
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhh
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 498 (1093)
..-..+..+ .+ ....+..... ....+|...+..+...++.++|..++.++..
T Consensus 625 ~~~~se~~L---p~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---------------------- 678 (799)
T KOG4162|consen 625 KSAGSELKL---PS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---------------------- 678 (799)
T ss_pred hhccccccc---Cc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----------------------
Confidence 000000000 00 0000000000 0135677788899999999999999999987
Q ss_pred HHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHH
Q 001357 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (1093)
Q Consensus 499 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 578 (1093)
+.|..+.+++..|.++...|+..+|...|..++..+|+++.+...+|.++...|+..-|
T Consensus 679 ---------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la 737 (799)
T KOG4162|consen 679 ---------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLA 737 (799)
T ss_pred ---------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchH
Confidence 45678899999999999999999999999999999999999999999999999998888
Q ss_pred HH--HHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 579 IE--LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 579 ~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.. ++..+++++|.++++|+.+|.++.+.|+...|..+|..++++.+.
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 87 999999999999999999999999999999999999999997765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-17 Score=175.66 Aligned_cols=617 Identities=14% Similarity=0.075 Sum_probs=407.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.++|...++..+.+++..|.+++++...|..+...|+-++|..+....+..++.+..+|..+|.++....+|++|+++|+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC--
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-- 264 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~-- 264 (1093)
.++...|++ ..++..++.+..++++++-......+.+++.|.....|+.++..+.-.|+ +..|+..++...+..
T Consensus 100 nAl~~~~dN-~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 100 NALKIEKDN-LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHhcCCCc-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcc
Confidence 999999999 78899999999999999999999999999999999999999999999998 888888777766554
Q ss_pred -CCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 001357 265 -PYC-----AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1093)
Q Consensus 265 -p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1093)
|.. ..............|.++.|.+.+...-. ...+........+..+..++++++|..+|...+. .+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~---rn 249 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE---RN 249 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh---hC
Confidence 332 23444455666778888877776654332 1223344566789999999999999999999998 67
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHH
Q 001357 339 HEFIFPYYGLGQVQLKLGDFRSAL-TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE-LLRKAAKIDPRDAQAFIDL 416 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~l~~~l~~~p~~~~~~~~l 416 (1093)
|++...+..+-.++....+--+++ ..|...-+..|. ......++.....-.++...+. ++...+ ....+.+...+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l--~Kg~p~vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLL--SKGVPSVFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHh--hcCCCchhhhh
Confidence 888777777766665334444455 444444443333 3333334333333333333332 222222 23334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcC--C-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001357 417 GELLISSDTGAALDAFKTARTLLKKAG--E-----------EVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1093)
Q Consensus 417 a~~~~~~~~~~A~~~~~~a~~~~~~~~--~-----------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 480 (1093)
-.+|.. +.. ..++++.+......- . ..+ ...++.++..+...|+++.|..++..|+.
T Consensus 327 ~SLyk~--p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---- 399 (700)
T KOG1156|consen 327 RSLYKD--PEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---- 399 (700)
T ss_pred HHHHhc--hhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----
Confidence 555511 111 113333333222110 0 011 35667788899999999999999999998
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHH
Q 001357 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 560 (1093)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 560 (1093)
..|..+..+...|+++...|.+++|..++..+.+.+-.+.-
T Consensus 400 ---------------------------------------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 400 ---------------------------------------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ---------------------------------------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 55778899999999999999999999999999988776544
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-------hHHHH--hhhhhhcccchHHHHHHHHHhhhcCCC-----C
Q 001357 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSM--LGDLELKNDDWVKAKETFRAASDATDG-----K 626 (1093)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~--l~~~~~~~g~~~~A~~~~~~~l~~~~~-----~ 626 (1093)
.-..-+....+.++.++|...+....+..-+-. -.|+. -|..|.++|++..|++-|..+-..... -
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqf 520 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQF 520 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Confidence 444566777788899999988877655442111 14443 367788888998888887765543211 1
Q ss_pred ChHHHHHh---HhHHHHHHHhhcc--cCchHHHHHHHHHHHHHHHHHhhCCC-C---HHHHHHHH----HHHHh-cCCch
Q 001357 627 DSYATLSL---GNWNYFAALRNEK--RAPKLEATHLEKAKELYTRVIVQHTS-N---LYAANGAG----VVLAE-KGQFD 692 (1093)
Q Consensus 627 d~~~~~~l---~~~~y~~~~~~~~--~~~~~~~~~~~~A~~~~~~~l~~~p~-~---~~a~~~la----~~~~~-~g~~~ 692 (1093)
|..+++.- -.. |....+-.. .+...-..-...|+++|-++... |+ + ..-.-.+. .+... ...-.
T Consensus 521 Dfhtyc~rk~tlrs-Yv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~-p~~~~~~~~~~~~ms~e~kk~~~k~rk~~k 598 (700)
T KOG1156|consen 521 DFHTYCMRKGTLRS-YVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDS-PNMYTNKADEIEKMSDEEKKIKKKQRKAKK 598 (700)
T ss_pred hHHHHHHhcCcHHH-HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcC-cccccccchhhhhccHHHHHHHHHHHHHHH
Confidence 22221100 000 111111000 00000012234566666665543 31 0 00111111 01100 01111
Q ss_pred hHHHHHHHHHH----Hhc-CCCCCCchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccH
Q 001357 693 VSKDLFTQVQE----AAS-GSVFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 766 (1093)
Q Consensus 693 ~A~~~~~~~~~----~~p-~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~ 766 (1093)
.|...-.+.-+ ..+ .+..+..++. --.|+-+..... ..+|..++..+... .+..+..+.....+|++.|++
T Consensus 599 k~~~e~~~~~~~~~~~~~s~~~~~~~~d~-~~~gekL~~t~~Pl~ea~kf~~~l~~~--~~~~~~~~iL~~ely~rk~k~ 675 (700)
T KOG1156|consen 599 KAKKEAKKKKDKKKKEAKSQSGKPVDIDE-DPFGEKLLKTEDPLEEARKFLPNLQHK--GKEKGETYILSFELYYRKGKF 675 (700)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCC-cchhhhHhhcCChHHHHHHHHHHHHHh--cccchhhhhhhHHHHHHHHHH
Confidence 11111111111 011 0111111111 145666655543 46688888777665 566688888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcchh
Q 001357 767 QDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 767 ~~A~~~~~~al~~~P~~~~~~ 787 (1093)
.-|.+++.++-.+.+..+.+.
T Consensus 676 ~l~~~~~~~~~~~~~~~~~l~ 696 (700)
T KOG1156|consen 676 LLALACLNNAEGIHGTHPSLH 696 (700)
T ss_pred HHHHHHHHhhhhhcCCCCcch
Confidence 999999999999988876653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=180.04 Aligned_cols=323 Identities=16% Similarity=0.108 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
.+.-+.-||.-++..|.+. .|+..|..++..+|++..+++.+|.+|+..|+..-|+..|.+++++.|+.
T Consensus 37 dvekhlElGk~lla~~Q~s-----------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF 105 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLS-----------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence 3444555666666555544 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
..+.+..|.+++++|.++.|...|..++..+|++.. .........++..|+...|+.....++++.
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 999999999999999999999999999999996511 112234455667799999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH
Q 001357 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1093)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1093)
|-++..+...+.+|...|+ ...||..+..+-++..++...++.++.+++..|+.+.++......++..+........
T Consensus 186 ~Wda~l~~~Rakc~i~~~e---~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGE---PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999876544332222
Q ss_pred HHH---------HHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001357 308 YYN---------LARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (1093)
Q Consensus 308 ~~~---------la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (1093)
|-. -+......++|.+++...++.++.-+. .+-....+-.+..|+...|++.+|+..+..++..+|+++.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 222 244456678899999999998873222 1122334555778889999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
++...+.+|+....|+.|+..|+++...++++..+.-.+-.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 99999999999999999999999999999988777655443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-17 Score=172.00 Aligned_cols=434 Identities=16% Similarity=0.106 Sum_probs=316.8
Q ss_pred hHHHHHHHHHHHHHHHhc--------------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001357 106 KEEHFILATQYYNKASRI--------------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~--------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 165 (1093)
++..|..|.+.|..++++ .|.+.......+.+|...++-+.|+..+..+...- ..+...
T Consensus 55 h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~in 133 (564)
T KOG1174|consen 55 KERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRIN 133 (564)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHH
Confidence 356677788888777643 23455666778889999999999988887664332 345666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH---HHHHHHH
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV---ALAVMDL 242 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~---~la~~~~ 242 (1093)
+.++..+..-++-.++.-.|..++...|-.... . .|.+-....-++.+-. -..++...|.....|. .++.++.
T Consensus 134 lMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i--~~ll~l~v~g~e~~S~-~m~~~~~~~~~dwls~wika~Aq~~~ 209 (564)
T KOG1174|consen 134 LMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-I--EALLELGVNGNEINSL-VMHAATVPDHFDWLSKWIKALAQMFN 209 (564)
T ss_pred HHHHHHHhccccccHHHHhhhHHHHhcchHHHH-H--HHHHHHhhcchhhhhh-hhhheecCCCccHHHHHHHHHHHHHh
Confidence 677777766666667777777777766643111 1 1111111111111111 1122334454443332 2333333
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1093)
.... +.-+..++-.-....|++...+..+|.+++..|++.+|+..|+++... +|....+.-..|..+...|+++
T Consensus 210 ~~hs---~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 210 FKHS---DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred cccc---hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHh
Confidence 3222 444555566666777889999999999999999999999999888754 3666677777788888889888
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
+--.+....+. ........|+.-+..++..+++..|+.+-++++..+|.+..++...|.++...++.++|+-.|+.+
T Consensus 284 ~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 284 QDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 87777766665 334455668888888899999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HH-HHHcCCHHHHHHHHHHHHhcch
Q 001357 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG-VI-HFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 403 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la-~~-~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
..+.|.....|..|..+| ..+.+.+|......+++.++.. ...+..+| .+ +..----++|..++++++.
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-----A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--- 432 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-----ARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--- 432 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-----hhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence 999999999999999999 8999999998888888887763 56666664 33 3333446778888888887
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChH
Q 001357 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 559 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (1093)
..|....+...+|.++...|.+..++.++++.+...|+.
T Consensus 433 ----------------------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 433 ----------------------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred ----------------------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-
Confidence 567888888889999999999999999999999888875
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhh
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 602 (1093)
..+..||.++...+.+.+|...|..++.++|++..+...+-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 6788899999999999999999999999999887766555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-17 Score=168.22 Aligned_cols=314 Identities=16% Similarity=0.088 Sum_probs=251.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1093)
.+.+.+..++...|...+--+-. ...-+.++..+..+|.+++..|++.+|+..|+++..++|.+...+-..|.++.+.|
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence 34444444554444444433321 11456777778888999999999999999999999999988888888888888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001357 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 469 (1093)
+++.-..+...++........-|+.-+.++ ...++..|+.+-.+++...+. ....+...|.++...|+.++|+-
T Consensus 281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHHH
Confidence 988888888888877766666666666655 888889999888888877554 46778888999999999999999
Q ss_pred HHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (1093)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (1093)
.|+.|.. ..|....+|-.+..+|...|.+.+|...-+
T Consensus 356 aFR~Aq~-------------------------------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 356 AFRTAQM-------------------------------------------LAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHHHHHh-------------------------------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 9998887 456788889999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCC
Q 001357 550 LILFKYQDYVDAYLRLA-AIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (1093)
Q Consensus 550 ~~l~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d 627 (1093)
.++...|.++.++..+| .++. .-.--++|..++++++.+.|....+-..++.++...|.+..++..+++.+...+ |
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D 470 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--D 470 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--c
Confidence 99999999988888886 4443 333457799999999999999999999999999999999999999999988776 5
Q ss_pred hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 001357 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1093)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 688 (1093)
...+..||++ +... +.+.+|+..|..+|.++|++..+.-++-.+-.+.
T Consensus 471 ~~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 471 VNLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred cHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 6667779999 8888 8999999999999999999988877765554433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-15 Score=154.81 Aligned_cols=466 Identities=13% Similarity=0.163 Sum_probs=351.2
Q ss_pred HHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1093)
Q Consensus 91 ~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1093)
..+.+.|.++.+ ++.+..|..+|++|+..+..+...|+..+.+-+.......|..++++++..-|.--..|+....
T Consensus 74 ~~WikYaqwEes----q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 74 QVWIKYAQWEES----QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHh----HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 345566666633 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhH
Q 001357 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1093)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1093)
+--.+|+...|.++|++-+...|+. .+|......-.+.+..+.|+.+|++.+-..| .+..|...+..-...|+ .
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~---~ 223 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGN---V 223 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCc---H
Confidence 9999999999999999999999986 5677778888888999999999999998887 67889999999999998 8
Q ss_pred HHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH-HHHHHHHHHhcCC---HHH
Q 001357 251 RKGMEKMQRAFEIYPYC---AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YYNLARSYHSKGD---YEK 323 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~la~~~~~~g~---~~~ 323 (1093)
.-+...|.+++....++ ...+...|..-..+..++.|.-+|.-++...+.+ .+.- +-.....--+-|+ .++
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhHH
Confidence 88999999998876543 3345555666677888999999999998655322 2222 2222222223343 333
Q ss_pred HHH-----HHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHH---HH
Q 001357 324 AGL-----YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-------TLKALGHIY---VQ 388 (1093)
Q Consensus 324 A~~-----~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~---~~ 388 (1093)
++. .|+..+. .+|.+..+|+.+..+....|+.+.-.+.|++++..-|...+ ++.-+-.++ ..
T Consensus 302 ~Iv~KRk~qYE~~v~---~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVS---KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHhhhhhhHHHHHHH---hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2444444 66777788888888888888888888888888877665322 111111111 23
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 389 LGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 389 ~g~~~~A~~~l~~~l~~~p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
..+.+.+..+|+.++.+-|.. +.+|+..+... .+.+...|...+..++...|. ..+.-....+-.++++
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIELELQLRE 452 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHHHHHHhh
Confidence 467888888888888887754 55666666666 777888888888888777665 4555556666777888
Q ss_pred HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHH
Q 001357 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 543 (1093)
Q Consensus 464 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 543 (1093)
++....+|++.+. ..|.+..+|...|.+-..+|+.+.
T Consensus 453 fDRcRkLYEkfle-------------------------------------------~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 453 FDRCRKLYEKFLE-------------------------------------------FSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHHHHHHh-------------------------------------------cChHhhHHHHHHHHHHHHhhhHHH
Confidence 8888888888877 668889999999999999999999
Q ss_pred HHHHHHHHHHhcCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhh-----ccc---------
Q 001357 544 ASVLYRLILFKYQDYVD--AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL-----KND--------- 607 (1093)
Q Consensus 544 A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~g--------- 607 (1093)
|..+|+-++....-+.. .|-.....-...|.++.|..+|++.+...+... +|...+.+.. ..+
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~ 568 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEIT 568 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcc
Confidence 99999988875433322 333344445577899999999999999887655 7777777655 333
Q ss_pred --chHHHHHHHHHhhh
Q 001357 608 --DWVKAKETFRAASD 621 (1093)
Q Consensus 608 --~~~~A~~~~~~~l~ 621 (1093)
....|...|+.+..
T Consensus 569 ~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 569 DENIKRARKIFERANT 584 (677)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 45566666666544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-14 Score=157.14 Aligned_cols=667 Identities=13% Similarity=0.101 Sum_probs=435.4
Q ss_pred hcCCChHHHHHHHHHHHHcCCH-HHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh-hhhhHhHHHHHH
Q 001357 35 AEQAPLDLWLIIAREYFKQGKV-EQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE-TKQREKEEHFIL 112 (1093)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~-~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~-~~~~~r~~~~~~ 112 (1093)
..+-++..|..-.. +++|.. .+-..++++++..-| .+ +.+..-|++.-... ...-..+..|..
T Consensus 22 Rnp~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp-----~s--------ykiW~~YL~~R~~~vk~~~~T~~~~~~ 86 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELP-----GS--------YKIWYDYLKARRAQVKHLCPTDPAYES 86 (835)
T ss_pred cCchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCC-----Cc--------hHHHHHHHHHHHHHhhccCCCChHHHH
Confidence 35667788887543 333433 445557788875522 22 22333333221111 011112456777
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
--.+|++++..-..-|.+|......+..+|+...-...|.++|..-|- +...|-.........+-..-++..|++.|+
T Consensus 87 vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 87 VNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 788888888766677899999999999999999999999999988774 344555555556677888899999999999
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
..|... -.....+...++.++|.+.+...+.. .+.+...|..+..+..+.-+...--.--..++..+..
T Consensus 167 ~~P~~~----eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 167 VAPEAR----EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred cCHHHH----HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 999873 33456778899999999999988764 3445667777777766654422112223345566666
Q ss_pred CCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhcCCCCC
Q 001357 264 YPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKPHE 340 (1093)
Q Consensus 264 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~~~ 340 (1093)
.++. ...|..||..|.+.|.++.|..+++.++...-...+...++-..+ .|++-.-.+.- +.....+..+
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhh
Confidence 6653 467888999999999999999999998865432222222221111 11111111100 1111111112
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHH
Q 001357 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR-----DAQAFI 414 (1093)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~~p~-----~~~~~~ 414 (1093)
....-..++..-........- .=.-++..+|+++..|+....++ .|+..+-+..|..++. .+|. ....|.
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLL--LNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWV 391 (835)
T ss_pred hhhHHHHHHHHHHHHhccchH--HHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHH
Confidence 222222222222111111111 11224566888888888776554 6788899999999886 3443 357899
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001357 415 DLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1093)
Q Consensus 415 ~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 493 (1093)
.++.+| ..|+.+.|...|+++...--. ....-..+|.+.|..-....+++.|+.+.+.|...+....
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----------- 459 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----------- 459 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----------
Confidence 999999 999999999999998765211 1111267888889999999999999999999987543211
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 001357 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1093)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1093)
+.+|+.... ....--....+|..++......|-++....+|.+++.+.--.+....+.|..+....
T Consensus 460 -----------~~~yd~~~p---vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 460 -----------LEYYDNSEP---VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK 525 (835)
T ss_pred -----------hhhhcCCCc---HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH
Confidence 000100000 000001255688888999999999999999999999988888888889999988888
Q ss_pred CHHHHHHHHHHHHHHc--CCChhHHHHhhhhh---hcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhccc
Q 001357 574 NLQLSIELVNEALKVN--GKYPNALSMLGDLE---LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 648 (1093)
Q Consensus 574 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~ 648 (1093)
-++++.+.|++.+.+. |.-.++|..+-.-. +...+.+.|..+|+++++..|....-.++ |. |...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy-Ll---YA~l------ 595 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY-LL---YAKL------ 595 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH---HHHH------
Confidence 9999999999999887 45555665443332 23346899999999999988753333222 21 3333
Q ss_pred CchHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 001357 649 APKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 726 (1093)
Q Consensus 649 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~ 726 (1093)
+.+-|-...|+.+|+++-..-+. +...++++-+.-+ ..=-...-..+|+++++..|++ ......+..+..-..
T Consensus 596 --EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEtk 670 (835)
T KOG2047|consen 596 --EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLETK 670 (835)
T ss_pred --HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhhh
Confidence 11128889999999998664433 3333333322111 1123456678999999998854 344566677888899
Q ss_pred hcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHH
Q 001357 727 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 772 (1093)
Q Consensus 727 ~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~ 772 (1093)
.|..+.|..+|.-+.+..+...++..|..--..-.+.|+-+.-++.
T Consensus 671 lGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999998876666788888877777888884443333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-16 Score=181.42 Aligned_cols=305 Identities=14% Similarity=0.076 Sum_probs=237.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
....|...+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..+|.++.+..|+....+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 46678889999999999999999999999888999999999999999999999999999999988445667779999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHHcCChHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1093)
|+++.|...++++++..|+++.++..++.++...|+ ++.|+..+....+..+.++..+. .....+...+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999877544433321 11222233344444
Q ss_pred HHHHHHHHHhccC-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 287 A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
+...+..+....+ ..+.++..+..++..+...|++++|...+.++++..++++..... .......+..++...++..+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHH
Confidence 4445555554322 223567888889999999999999999999998843332221101 22333344567888899999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001357 366 EKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (1093)
Q Consensus 366 ~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 440 (1093)
+++++..|+++ ..+..+|.++++.|++++|..+|+ .++...|+... +..++.++ ..|+.++|..++++++...-
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999998 888889999999999999999999 56677786655 55888888 88999999988888776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-19 Score=193.27 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 531 (1093)
..++.+++..|++++|+.++.+.+... .+|.+...|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 466999999999999999997665421 146788889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHH
Q 001357 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1093)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1093)
|.+....++++.|+..|++++..++..+..+..++.+ ...+++.+|+.++..+++..+ ++..+..+..++...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999988889898888 789999999999999888764 56777788888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 001357 612 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (1093)
Q Consensus 612 A~~~~~~~l~~~~-~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 690 (1093)
+...+..+....+ ..+...+..+|.+ |... |+.++|+.+|+++++.+|+|..+...++++++..|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776442 3467788888988 8888 999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHH
Q 001357 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (1093)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~ 770 (1093)
.+++..++.......| .++..+..+|.+|...|++++|+.+|++++.. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 67889999999999999999999999999998 7888999999999999999999999
Q ss_pred HHHHHHHHh
Q 001357 771 KSLLRAIHL 779 (1093)
Q Consensus 771 ~~~~~al~~ 779 (1093)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988753
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-18 Score=168.48 Aligned_cols=275 Identities=17% Similarity=0.185 Sum_probs=245.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 136 QLLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
.+++...+...|-..+...+... |. +...-..+|.||++.|-+.+|.+.++..+...|.. +.+..++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 34566677777777776665442 21 22334679999999999999999999999998875 67888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++..|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
-|+.++.++++..- ..++.+.++|.|++..++++-++..|.+++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 99999999998764 445899999999999999999999999999876666777889999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
+-++..+|++.+++++||.+-.+.|+.+.|..++..+....|...+..++++.
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 99999999999999999999999999999999999999999988777766654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-15 Score=151.39 Aligned_cols=375 Identities=13% Similarity=0.095 Sum_probs=197.5
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
..+|..|+.+++-.+..+......+...+|.|++++|+|++|+..|+-+...+.-+...++.|+.+++-.|. |.+|.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HHHHH
Confidence 344555555544444333322223444455555555555555555555554444444555555555555554 44444
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001357 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1093)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1093)
....+ .|.++.....+..+..+.++-.+-..+....-. ..+-...++.+.+..-.|.+|+.+|.+++.
T Consensus 112 ~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~- 179 (557)
T KOG3785|consen 112 SIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ- 179 (557)
T ss_pred HHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33322 244444433343444444444433333332221 124455666666666777888888888776
Q ss_pred cCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 001357 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAF 413 (1093)
Q Consensus 335 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~p~~~~~~ 413 (1093)
.+|.....-..++.||+++.-|+-+.+++.-.+...|+.+.+.+..+...++.=+-..|..-...+... +...+.+-
T Consensus 180 --dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 180 --DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred --cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 666666666777888888888888888888888888887777777777776654333344333333321 12222222
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhh
Q 001357 414 IDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492 (1093)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 492 (1093)
..+-.-+ .-.+-+.|+..+-..+.. -+++..++...|.++++..+|..+.+.
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--------IPEARlNL~iYyL~q~dVqeA~~L~Kd------------------- 310 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--------IPEARLNLIIYYLNQNDVQEAISLCKD------------------- 310 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--------ChHhhhhheeeecccccHHHHHHHHhh-------------------
Confidence 2111111 222334555554444433 245666777777777777777766543
Q ss_pred hhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH---HHhc------CChHHHHH
Q 001357 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI---LFKY------QDYVDAYL 563 (1093)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---l~~~------p~~~~~~~ 563 (1093)
..|..+.-+...|.++...|+--...+.++-+ +..- -+.+....
T Consensus 311 ---------------------------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 311 ---------------------------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred ---------------------------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 33445555555566665555433332222211 1110 11122334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
.++..++-..++++.+.+++..-...-++....++++.+++..|++.+|.+.|-++.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 444444455556666666666555555556666666666666666666666665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-15 Score=151.72 Aligned_cols=450 Identities=15% Similarity=0.113 Sum_probs=293.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
+....++..|+..++-.+..+.... .....+|.+++..|+ |++|+..|.-+...+..+...+..||.+++..|.|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd---Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD---YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc---HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4456788888888887776554433 456678889999998 999999999888877777888999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
+|..+..++-+ .| .....+-...++.++-.+-+.+.....+ ...-.+.++.+.+..-.|.+||.+|
T Consensus 109 eA~~~~~ka~k----~p---L~~RLlfhlahklndEk~~~~fh~~LqD-------~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 109 EAKSIAEKAPK----TP---LCIRLLFHLAHKLNDEKRILTFHSSLQD-------TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHhhCCC----Ch---HHHHHHHHHHHHhCcHHHHHHHHHHHhh-------hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99888776532 23 3333444445566665555444433322 2244677888888888999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h--cCCHHHHHHHHHHHHHHHHhc
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKTARTLLKKA 442 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~a~~~~~~~ 442 (1093)
.+++..+|+.......++.||+++.-++-+.+++.-.+...|+.+.+....+... + .|+..++ -... +..+.
T Consensus 175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~--E~k~---ladN~ 249 (557)
T KOG3785|consen 175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAED--EKKE---LADNI 249 (557)
T ss_pred HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHH--HHHH---HHhcc
Confidence 9999988888888889999999999999999999999999999888877766644 2 3333221 1111 11111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCC
Q 001357 443 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522 (1093)
Q Consensus 443 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 522 (1093)
... |+.+..+++.-+-
T Consensus 250 ~~~------------------~~f~~~l~rHNLV---------------------------------------------- 265 (557)
T KOG3785|consen 250 DQE------------------YPFIEYLCRHNLV---------------------------------------------- 265 (557)
T ss_pred ccc------------------chhHHHHHHcCeE----------------------------------------------
Confidence 100 1111111100000
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhh
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 602 (1093)
--.+-+.|++++-.++..- +++..+|+..|..+++..+|+.+++. ++|..|.-+...|.+
T Consensus 266 --------------vFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv 325 (557)
T KOG3785|consen 266 --------------VFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVV 325 (557)
T ss_pred --------------EEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHH
Confidence 0011223333333333222 23444444445555555555444433 445555555555555
Q ss_pred hhcccch-------HHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCC
Q 001357 603 ELKNDDW-------VKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 674 (1093)
Q Consensus 603 ~~~~g~~-------~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 674 (1093)
+...|+- .-|...|.-+-..... ......-+++.. ++.. .+++..+-++...-....+|
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------------~qFddVl~YlnSi~sYF~Nd 392 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------------FQFDDVLTYLNSIESYFTND 392 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------------HHHHHHHHHHHHHHHHhcCc
Confidence 4444432 2222222221111111 122233456666 7777 88999999888888888888
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHH
Q 001357 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQIL 753 (1093)
Q Consensus 675 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l 753 (1093)
....++++++++..|++.+|.++|-++..-.- .+.......|+.||...|....|..+|- +.. .+.+ ...+
T Consensus 393 D~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~-t~~e~fsLL 464 (557)
T KOG3785|consen 393 DDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNKKPQLAWDMML---KTN-TPSERFSLL 464 (557)
T ss_pred chhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcCCchHHHHHHH---hcC-CchhHHHHH
Confidence 88889999999999999999999988754321 1333445578999999999999999863 331 2223 5667
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 754 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
..++..+++.+.+--|.+.|..+-.++|+.
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 788999999999999999999999999853
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-19 Score=191.80 Aligned_cols=262 Identities=24% Similarity=0.307 Sum_probs=100.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+...+++++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666665444333 333 55566666666666666666666666666666666666566555 444
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001357 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1093)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1093)
++ +.+|+.++.++++..+ ++..+..++.++...++++++..++..+.... ..+.++..|..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 54 6666666666665443 34455555666666677777777766655422 2345567777788888888888888
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
+..|++++. ..|++..+...++.+++..|+++++...+....+..|.++..+..+|.+|...|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 888888887 45666677777888888888888877777777777777777778888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001357 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1093)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 438 (1093)
.+|+++.++..++.++ ..|+.++|..++.++...
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888 888888888777776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=190.13 Aligned_cols=263 Identities=12% Similarity=-0.010 Sum_probs=177.3
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChHH
Q 001357 131 WVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 131 ~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
++.+|..++.. +.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~ 339 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQ 339 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HH
Confidence 34445444333 3456777777777777777777777777665533 23677777777777777777 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.++
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 677777777777777777777777777777777777777777777777 77777777777777777766655566666
Q ss_pred HHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCH
Q 001357 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1093)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1093)
+..|++++|+..+.+++... .|..+..+..+|.++...|++++|...+.++.. ..|....+...++..|...|+
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~- 490 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE- 490 (553)
T ss_pred HhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH-
Confidence 66777777777777766432 244556777778888888888888888777654 455566666777777777773
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.|...++.+++..-....-...+..+|.-.|+.+.+..+ +++.+.
T Consensus 491 -~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 491 -RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666666666654322222233366677777777777666 655543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=170.06 Aligned_cols=246 Identities=18% Similarity=0.164 Sum_probs=231.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
..+|.||++.|.+.+|.+.|+..+...| .+..++.++.+|.+..+...|+.+|...+...|.+ ...+.+++.++..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-VTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-hhhhhhhHHHHHHHH
Confidence 4589999999999999999999998875 68889999999999999999999999999999999 777899999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
++++|.++|+.+++.+|.|+++...+|.-|+..++ .+-|+.+|++++.+.-.++..+..+|.+++..++++-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~---PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN---PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC---hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999999999999999998988888 999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
.+++.....+...+++|+++|.+....|++.-|...|+-++. .++++..++.+||.+-.+.|+.+.|..++..+-..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999998877788899999999999999999999999999997 78899999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHH
Q 001357 372 YPDNCETLKALGHI 385 (1093)
Q Consensus 372 ~p~~~~~~~~la~~ 385 (1093)
.|.-.+..++++.+
T Consensus 459 ~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 459 MPDMAEVTTNLQFM 472 (478)
T ss_pred CccccccccceeEE
Confidence 99887777766544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=188.30 Aligned_cols=269 Identities=15% Similarity=0.071 Sum_probs=215.0
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q 001357 157 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 222 (1093)
Q Consensus 157 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~ 222 (1093)
..|.+..+ ++..|..++.. +.+.+|+.+|++++..+|++ ..++..+|.|+..++ ++.+|+..+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555443 34444433332 45789999999999999999 677888998877443 47899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC
Q 001357 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1093)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 302 (1093)
+++++|+++.++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999776 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1093)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1093)
..+..++.++.+++..|++++|+..+.+++.. .+|....++..+|.++...|++++|+..+.++....|....++..+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 44455666677788899999999999998863 2466777889999999999999999999999988888888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 437 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (1093)
+.+|...|+ .|...++++++..-....-...+..++ ..|+.+.+..+ +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 999988884 788877777664322222222256666 66777666655 55443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-12 Score=140.00 Aligned_cols=596 Identities=11% Similarity=0.118 Sum_probs=385.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHH--c------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLA--K------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
+-..+|+++++.-|.+...|+..-..-.. . .-|..--.+|++++-.--.-+..|+.....+..+|+...-..
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 45677888888888888777654322111 1 125556667777776555667778888888888888888888
Q ss_pred HHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001357 184 FYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1093)
Q Consensus 184 ~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1093)
.|.++|..-|-. ...+|-.........|-++-++..|.+.|+.+|...+-++ ..+...++ ..+|-+.+...+.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi---e~L~~~d~---~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI---EYLAKSDR---LDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---HHHHhccc---hHHHHHHHHHhcC
Confidence 888888776643 1233333444455667777888888888888876644332 23333444 6677777766654
Q ss_pred hC-------CCcHHHHHHHHHHHHHcCChHH---HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 263 IY-------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 263 ~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
.+ +.+-..|..+..+..+.-+.-. +..++...+... .......|..||..|.+.|.++.|..+|++++
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33 4555666666666666555443 333344333322 12234567778888888888888888888887
Q ss_pred HhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
...-...++..++-..+. |++....+.--+. . ++. ...+-..++..-.-.++...-+ -.-++..+|
T Consensus 276 ~~v~tvrDFt~ifd~Ya~-------FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~ 346 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQ-------FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL--NSVLLRQNP 346 (835)
T ss_pred HhheehhhHHHHHHHHHH-------HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH--HHHHHhcCC
Confidence 754433444333322221 1111111100000 0 111 1122222222222222111111 112356689
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccc
Q 001357 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (1093)
Q Consensus 408 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 486 (1093)
++...|.....++ .|+..+-+..|..++... |......+..++..+|.+|...|+.+.|...|+++....-
T Consensus 347 ~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y------- 418 (835)
T KOG2047|consen 347 HNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY------- 418 (835)
T ss_pred ccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-------
Confidence 9999888777766 567778888888887654 3323333468899999999999999999999999988421
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC----------
Q 001357 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---------- 556 (1093)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------- 556 (1093)
..-.+...+|..-|..-....+++.|..+.+.+...-.
T Consensus 419 --------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 419 --------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 01123577889999998899999999999998875211
Q ss_pred --------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001357 557 --------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1093)
Q Consensus 557 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~ 628 (1093)
.....|..++......|-++.....|++++.+---.|....++|.++....-++++.+.|++.+.+.+-+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 123466777777788899999999999999999889999999999999999999999999999998877666
Q ss_pred HHHHHhHhHHHHHHH--hhcccCchHHHHHHHHHHHHHHHHHhhCCC-CH-HHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 001357 629 YATLSLGNWNYFAAL--RNEKRAPKLEATHLEKAKELYTRVIVQHTS-NL-YAANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (1093)
Q Consensus 629 ~~~~~l~~~~y~~~~--~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~-~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (1093)
+-. .+. |+... +... ...+.|..+|+++|...|. .. ..+...+.+--+.|....|+.+|+++-..
T Consensus 547 ~di---W~t-YLtkfi~rygg-------~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 547 YDI---WNT-YLTKFIKRYGG-------TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHH---HHH-HHHHHHHHhcC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 532 222 32221 1111 5689999999999998874 22 23344455555679999999999998765
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhc----CHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001357 705 ASGSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 705 ~p~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 780 (1093)
.+ +.-.+.+-.+|...- -...-..+|++|++..|+..-.......+..-.+.|..+.|..+|...-++.
T Consensus 616 v~-------~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 616 VK-------EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred CC-------HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 43 223333333333310 1334567899999986555556667778888889999999999998888876
Q ss_pred CC
Q 001357 781 PS 782 (1093)
Q Consensus 781 P~ 782 (1093)
|-
T Consensus 689 dP 690 (835)
T KOG2047|consen 689 DP 690 (835)
T ss_pred CC
Confidence 53
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-15 Score=169.72 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
+|+|..|.+.+.++.+..|.....++..|.++...|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566999999999999998888889999999999999999999999999999885 56777899999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH----HHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA----LAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
+.+++..|++ +.++..++.++...|+++.|...+.+.++..+.+...+.. ...-....+. ..++...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 6788999999999999999999999999875544443321 1111122222 455566777777
Q ss_pred HhCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
...| +++.++..++..+...|+++.|...++.+++..+.++.... ...........++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 7777 58999999999999999999999999999986644332111 13333344556889999999999998 5
Q ss_pred CCCch--hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.|+.+ .....+|.+++..|++++|..+|+ .+++..|+... +..+|.++...|+.++|..+|++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666 778899999999999999999999 57778886655 569999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-14 Score=153.64 Aligned_cols=457 Identities=14% Similarity=0.075 Sum_probs=294.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
.++.|++|++..++++...|+++.++.....++.+.++|++|+.+.+.-....-.+ ...+..|.|.|+.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 36778899999999999999999999999999999999999996555433222222 22389999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
. ..++.+ ..+....|..++++|+|++|..+|+.+++.+.++.+.......+..... . ..+ +.+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-----l-~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-----L-QVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-----h-hHH-HHHhccCCC
Confidence 8 334444 4567889999999999999999999999888777666554443322211 0 111 334444455
Q ss_pred C-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCC-------chHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 266 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPT-------KSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 266 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
. +...+++.+.++...|+|.+|++++..++... ..+.. ...+...++.++..+|+..+|...|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 56788999999999999999999999995321 11111 12356678899999999999999999999
Q ss_pred HhcCCCC-CchhhHHHHHHHHHHcCCHH-HHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 333 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYP----------DNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 333 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
...+.+. ....+..++..+-....-++ .++..++......+ .-..++.+.+.+.+..+.-+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8543222 22222333322211111111 12222222221111 122455666677777777777766665
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
..-...|....-........ ....+..+..++.......|. ....+...++.+.+..|++..|+..+...+. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~--~ 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLE--S 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h
Confidence 55445555433333333333 333566666666554443222 2367888899999999999999999985542 1
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc----
Q 001357 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY---- 555 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 555 (1093)
|...+. .....+.+...+..++...++...|..++..++...
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111000 011233344445555667777777777777766522
Q ss_pred ---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHH
Q 001357 556 ---QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615 (1093)
Q Consensus 556 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (1093)
+.....+..++..-.+.|+-++|...+++.++.+|++..++..+...|... +.+.|..+
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 222344555666666778888888888888888888888887777665543 34444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-15 Score=169.92 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=216.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
.+..|...+..|+|+.|.+.+.+.....+.-...++..+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988887655433323344444666699999999999999999999988445555668999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH--------HHHHHHHcC
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 282 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~--------la~~~~~~g 282 (1093)
|+++.|...++++++.+|+++.++..++.++...|+ +++|+..+....+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 999999998888876654443221 111111122
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHH
Q 001357 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1093)
+.+....+.... ....+.++.+...++..+...|+.++|...+.++++ ..+ ....... ...+..+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l--~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLL--IPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHH--HhhccCCChHHHH
Confidence 222222222222 122355677888888888888888888888888876 222 2222222 2223458888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++. .+..++.++ ..|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888888888888888888888888888888888888654 455778888 8888888888888776653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=170.88 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=185.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+..|..+++.|++.+|.-+|+.++..+|.+.++|..||.+....++ -..||..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4466667777777777777777777777777777777777666665 5666777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhccCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKS----HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
.|.-..|..++..-+.......... .-.+...........+..-.++|..+....+. ...+.++..||.+|...|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcch
Confidence 7766667766666654321000000 00000000000111122334455555543321 255678999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (1093)
+|+.|+.||+.+|...|++...|+.||-.+....+..+|+..|.+++++.|..+.++++||..+ ..|.|.+|+.+|-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhcCCCC-----CHHHHHHHHHHHHHcCCHHHHHH
Q 001357 436 RTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQ 469 (1093)
Q Consensus 436 ~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 469 (1093)
+.+.+...... ...+|..|-.++...++.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99887632211 13566666666666776664443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=165.60 Aligned_cols=297 Identities=14% Similarity=0.110 Sum_probs=235.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQ 243 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~ 243 (1093)
.+..|.+.+..|+|+.|.+.+.+.....+. +...+...+......|+++.|...|.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 345666777799999999888776554333 24444555666699999999999999999999998644 4455899999
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchH-----HHHHHHHHHHhc
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 318 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~la~~~~~~ 318 (1093)
.|+ ++.|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999876544332222 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1093)
.+-+....++..... ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..+++++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 233333333333322 34567788999999999999999999999999994 4466555555544 44999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 399 l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
+++.++.+|+++..++.+|.++ ..++|++|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987554 566778999999999999999999999875
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-15 Score=161.90 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 108 EHFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
...+.++..+.+++...| ..+..|+.+|.++...|++++|+..|.+++..+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445578888888886443 2366799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
.|++++.++|++ ..+++.+|.++...|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.++...
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422211 22233444 88888888776644
Q ss_pred C
Q 001357 264 Y 264 (1093)
Q Consensus 264 ~ 264 (1093)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-16 Score=165.96 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=215.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 531 (1093)
+..|+.+++.|++.+|.-.|+.++. .+|..+.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 5679999999999999999999998 678999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh-------hhhhh
Q 001357 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------GDLEL 604 (1093)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~ 604 (1093)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-+...|........- ..-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999998887543322110 00112
Q ss_pred cccchHHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001357 605 KNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1093)
Q Consensus 605 ~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 683 (1093)
....+..-.+.|-.+....|. .|+.....||.+ |+.. |.|++|+.+|+.+|...|+|...|+.||-
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 223355556666666665553 677788889999 9888 99999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--------HHHHHH
Q 001357 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--------AQILLY 755 (1093)
Q Consensus 684 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~l~~ 755 (1093)
.++...+..+|+..|.+++++.| ....+++|||.+++.+|-|.+|+.+|-.||...+.... -.+|.+
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 78899999999999999999999999999987544221 246666
Q ss_pred HHHHHHhhccHHHHH
Q 001357 756 LARTHYEAEQWQDCK 770 (1093)
Q Consensus 756 la~~~~~~g~~~~A~ 770 (1093)
|=.++...++.+-+.
T Consensus 548 LR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 548 LRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHcCCchHHH
Confidence 666666666655433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=142.44 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
..+++.+|..|+..|++..|...++++|+.+|++..+|..++.+|...|. .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 56788889999999999999999999999999999999999999999988 888999999999999988888888888
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
.++..|.+++|...|++++... ..+..+.++.++|.|..+.|+++.|..+|.+++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888877643 3345567788888888888888888888888887 56677777778888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 412 (1093)
+|-.|..+++......+-....+.....+-...|+.+.+-.+=.++....|.....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888888777777677777777777777888877777777777777766543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5e-15 Score=160.79 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=122.0
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001357 141 KGEVEQASSAFKIVLEADR---D-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p---~-~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1093)
.+..+.++..+.+++...| . .+..++.+|.++...|++.+|+..|.+++..+|++ +.+++.+|.++...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 3567888999999986433 3 36779999999999999999999999999999998 78899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
+..|.++++++|++..++..+|.++...|+ +++|+..|.+++..+|+++..... ..+....+++++|+..+.+..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999988 999999999999999988732111 122233455555555554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-15 Score=140.77 Aligned_cols=209 Identities=23% Similarity=0.254 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h
Q 001357 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (1093)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~ 421 (1093)
.+.+.||.-|+..|++..|...++++++.+|++..+|..++.+|...|..+.|.+.|++++.++|++.+++++.|..+ .
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
+|.+++|...|.+++.. |. -..+..++.|+|.|..+.|+++.|..+|++++.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~------------------------- 167 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PA--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE------------------------- 167 (250)
T ss_pred CCChHHHHHHHHHHHhC-CC--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH-------------------------
Confidence 89999999999988763 22 233467889999999999999999999999988
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
.+|..+.....++..+...|++..|..+++......+-..+.+...+.+....|+-+.+-.+
T Consensus 168 ------------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 168 ------------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred ------------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 56788888899999999999999999999988888787788888888888899999999888
Q ss_pred HHHHHHHcCCChhHHH
Q 001357 582 VNEALKVNGKYPNALS 597 (1093)
Q Consensus 582 ~~~al~~~p~~~~~~~ 597 (1093)
-.+.....|.+++.-.
T Consensus 230 ~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 230 QAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHhCCCcHHHHh
Confidence 8888888888776543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-14 Score=156.91 Aligned_cols=255 Identities=25% Similarity=0.219 Sum_probs=210.9
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc--
Q 001357 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 335 (1093)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 335 (1093)
..|.-..+...++..|...|+|+.|+.++..++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 356677777889999999999999999999988652 1234444556679999999999999999999999743
Q ss_pred ---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
..+|..+.++.+|+.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3567778889999999999999999999999998863 33346788899999999999999999999987
Q ss_pred hC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 405 ID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFK 472 (1093)
Q Consensus 405 ~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~ 472 (1093)
+. |.-+..+.+||.+| ..|++.+|..+|++++.+......... ...++++|..|.+.+.+.+|..+|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 62 34467889999999 999999999999999999877644322 4678899999999999999999999
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001357 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (1093)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (1093)
++..+... . -...|.....+.+|+.+|..+|+++.|+++...++
T Consensus 434 ~~~~i~~~---~---------------------------------g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKL---C---------------------------------GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHH---h---------------------------------CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99874210 0 01567788899999999999999999999999887
Q ss_pred H
Q 001357 553 F 553 (1093)
Q Consensus 553 ~ 553 (1093)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=155.79 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=230.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
+...|..|+..|+.++...|.+...|..++.++...|+|++|....++.+.++|..+......+.++...++..+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 45667799999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHH---------------HhC---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001357 186 KRAL---------------QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1093)
Q Consensus 186 ~~al---------------~~~---p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1093)
+..- ..+ |.+ ..+.+.-+.|+..+|+++.|...--..+++++.+..+++..|.++....+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 5211 111 222 34566788999999999999999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1093)
.+.|+..|++++.++|....+-... ..+.....+...|.-.++.|+|..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~-------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS-------------------------MMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh-------------------------hhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999876432211 0122336777788999999999999999
Q ss_pred HHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 328 YMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1093)
Q Consensus 328 ~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 406 (1093)
|..++...|. ...++..|.+++.+...+|+..+|+..++.+++++|....++...|.|+..+++|++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999984332 123456688899999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 001357 407 PR 408 (1093)
Q Consensus 407 p~ 408 (1093)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 44
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-14 Score=156.60 Aligned_cols=257 Identities=23% Similarity=0.279 Sum_probs=206.2
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
.....|....+...++..|...|+|+.|...+..+++.+. ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455677778888899999999999999999999998521 23344444556999999999999999999999986
Q ss_pred --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001357 372 --------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1093)
Q Consensus 372 --------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (1093)
+|.-..++.+|+.+|...|++.+|..++++++.+. |.-...+.+++.++ ..+.+++|..++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34456789999999999999999999999998763 34456677788888 89999999999999
Q ss_pred HHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001357 435 ARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (1093)
Q Consensus 435 a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 511 (1093)
++++..+...... +.++.++|.+|+..|++.+|..+|++++.......
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----------------------------- 401 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----------------------------- 401 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-----------------------------
Confidence 9999885433333 68899999999999999999999999998521000
Q ss_pred ccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------cCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1093)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (1093)
....+.....+.++|..+.+.+.+.+|..+|..++.+ +|+...+|.+|+.+|..+|+++.|+++...
T Consensus 402 ------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 402 ------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred ------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0023455678888999999999999999998887753 345567788888888888888888888877
Q ss_pred HHHH
Q 001357 585 ALKV 588 (1093)
Q Consensus 585 al~~ 588 (1093)
++..
T Consensus 476 ~~~~ 479 (508)
T KOG1840|consen 476 VLNA 479 (508)
T ss_pred HHHH
Confidence 7643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-14 Score=151.60 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +.+|+..+.+++...|.+..++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666655 566666666666665555555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
++...|++++|...+..++... ..+.....+..+|.++...|++++|..+|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555554321 1123344556666666666666666666666665 33444555666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666666666666666666666666666666666555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-15 Score=151.76 Aligned_cols=312 Identities=16% Similarity=0.139 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.-....+..+++..+|.+|+..|..++...|++ ...|...+.++...|+++.|.-..+..++++|..+......+.++.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 345667777788888888888888888888888 6667788888888888888888888888888887777777777777
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1093)
..++ ..+|...++ +.. ++ ...
T Consensus 129 a~~~---~i~A~~~~~--------~~~-------------------------------------~~-----------~~a 149 (486)
T KOG0550|consen 129 ALSD---LIEAEEKLK--------SKQ-------------------------------------AY-----------KAA 149 (486)
T ss_pred hhHH---HHHHHHHhh--------hhh-------------------------------------hh-----------HHh
Confidence 7666 555544444 000 00 112
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
.|+..+++.+......|....+.+.-+.++...|++++|+..--.++++++.+..+++..|.+++..++.+.|+..|+++
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence 23333333333222334445566777899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhh
Q 001357 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482 (1093)
Q Consensus 403 l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 482 (1093)
+.++|+...+-..... .. ....+..-|.-.++.|++..|.+.|..++.+.|.
T Consensus 230 l~ldpdh~~sk~~~~~----------------~k----------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-- 281 (486)
T KOG0550|consen 230 LRLDPDHQKSKSASMM----------------PK----------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-- 281 (486)
T ss_pred hccChhhhhHHhHhhh----------------HH----------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--
Confidence 9999986544321111 11 1344556688899999999999999999996431
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHH
Q 001357 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (1093)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (1093)
....++..+.+++.+...+|+..+|+...+.++.++|.+..++
T Consensus 282 -------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 282 -------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred -------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 1224677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhh
Q 001357 563 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1093)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 600 (1093)
...|.++..++++++|+..|+++++...+ ......+.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 99999999999999999999999998766 55444443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=152.25 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..++..++..|...|+.. +|+..|.+++..+|.+..++..+|.++...|++++|+..|++++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 445555666666555544 666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 666666666666666666666666666542 222 34455566666666666666666666666666666666666666
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1093)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666 666666666666665555555555555555555555555544433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-13 Score=133.56 Aligned_cols=300 Identities=20% Similarity=0.249 Sum_probs=207.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 206 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~~la~~ 206 (1093)
-|..|.-++...+.++|+..|-.+++.+|....+.+.+|..+.+.|..+.|+.+.+.++. .|+. ...+.+.+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 455788889999999999999999999999999999999999999999999999987765 4554 23467789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
|+..|-++.|...|.......---..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~---------------- 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV---------------- 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh----------------
Confidence 9999999999999998877555566788888888888888 888998888888887654321
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
..+..|..++..+....+++.|+..+.++++ .+|..+.+-..+|.+....|+|..|++.++
T Consensus 178 ----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 178 ----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred ----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 1124455566666666666666666666666 556666666667777777777777777777
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 367 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 367 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
.+++.+|.. +.+.-.|..||.+.|+..+.+..+.++....++. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt--- 314 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT--- 314 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc---
Confidence 777666654 3566666667777777777777777666665543 2333344433 444445555544443333222
Q ss_pred CCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHh
Q 001357 445 EVPIEVLNNIGVIH---FEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 445 ~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~ 476 (1093)
....+.+.... ..-|...+.+..+..++.
T Consensus 315 ---~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ---MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ---HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333333322 245555666666666655
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-13 Score=134.59 Aligned_cols=285 Identities=16% Similarity=0.122 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1093)
++|+..|..+++.+|....+...||++|...|..+.|+.+....+...+.. .....+.+.+|.-|...|-++.|...|.
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~ 131 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN 131 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344444444444444444444444444444444444444444443322111 1233567788888888888888888888
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
..++ .+.-...+.-.|..+|....+|++||.+.++..+..+.. ...++.++..+....+++.|+..+.++++
T Consensus 132 ~L~d---e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 132 QLVD---EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHhc---chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 8774 233344567778888889999999999999888887653 35677888888888899999999999999
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh
Q 001357 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483 (1093)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 483 (1093)
.+|....+-+.+|.+. ..|++..|++.++.+++..+.. .++++..+..+|.+.|+.++.+.++.++....
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~----- 279 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN----- 279 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence 9999999999999998 8999999999998888765543 46788888999999999999999999888732
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHH
Q 001357 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563 (1093)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 563 (1093)
..+.+...++..-....-.+.|..++.+-+..+|+-...+.
T Consensus 280 ---------------------------------------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 280 ---------------------------------------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred ---------------------------------------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 13344455566666666678888888888888998644433
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHH
Q 001357 564 RLAAIAKAR--NNLQLSIELVNEAL 586 (1093)
Q Consensus 564 ~la~~~~~~--g~~~~A~~~~~~al 586 (1093)
.+..-.... |...+.+..+..++
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHH
Confidence 333222222 33455555555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-12 Score=143.94 Aligned_cols=316 Identities=16% Similarity=0.161 Sum_probs=187.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...++....++...|++++|+..+......-++....+-.+|.++.++|++++|...|..++..+|++ ...+..+..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 45677788888899999999999988888888888888999999999999999999999999999988 66667777776
Q ss_pred HHcC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 208 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME-KMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 208 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~-~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.-.. ....-..+|.......|....+.. +...+. .|+ .+...+. ++...+.. .-|.++..+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3332 456667778877777776443321 111111 122 1433333 33333332 2344444444444322
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHcCCHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 360 (1093)
....-...++......... .+.+. ... .....+|. ...+++.+++.|...|++++
T Consensus 157 ~K~~~i~~l~~~~~~~l~~-----------------~~~~~----~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLES-----------------NGSFS----NGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHHHHHHHHHHHHHHhhcc-----------------cCCCC----Ccc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 2222222222222211000 00000 000 00001222 23445666777777777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
|+.++++++...|..++.+...|.++-..|++.+|...++.+..+++.+-.+-...+..+ +.|+.++|...+....+..
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 777777777777777777777777777777777777777777777766666655556555 6677777666544332211
Q ss_pred HhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 440 KKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 440 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
. +...+ .......|.+|.+.|++..|+..|..+..
T Consensus 293 ~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 293 V--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred C--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 00000 23334567788888888888888877766
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-13 Score=146.51 Aligned_cols=212 Identities=13% Similarity=-0.020 Sum_probs=167.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH--HHH
Q 001357 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL--GKA 216 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~--~~A 216 (1093)
..+.+++|+..+.+++..+|.+..+|..++.++...| .+.+++..+.+++..+|++ ..+|...+.++.++|.. ..+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHHHHcCchhhHHH
Confidence 4567888999999999999999999999999999988 6799999999999999998 66788888888888874 678
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 001357 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1093)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1093)
+.++.+++..+|.|..+|...+.++...|. +++++..+.++++.+|.+..+|+..+.++...+...
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~----------- 193 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG----------- 193 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc-----------
Confidence 888999999999999999999999998888 899999999999999999888888777655432100
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 001357 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 372 (1093)
. .....+.++.+..+++. ..|.+..+|+.++.++.. .++..+|+..+..++...
T Consensus 194 ----------------~---~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 194 ----------------G---LEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred ----------------c---ccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 0 00113456666666666 556677777777777766 345566888888877777
Q ss_pred CCcHHHHHHHHHHHHH
Q 001357 373 PDNCETLKALGHIYVQ 388 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~ 388 (1093)
|.++.++-.|+.+|..
T Consensus 252 ~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 252 SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 8888888888888875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-12 Score=147.17 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=157.7
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1093)
+|+++.++..+|.++...|+++.|...+.++....|.+ ....+..+.+++..|++++|+..+++++..+|.+. .++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHH
Confidence 78889999999999999999999888888888777654 45677788889999999999999999999999884 333
Q ss_pred HHHHHHHHHcCCH----HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQL----GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 201 ~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
.. +..+..+|.+ ..+...+......+|....++..++.++...|+ +.+|+..+++++.++|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 32 4455554444 444444444335566677777788888888888 889999999999999998888888888
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
+++..|++++|+.++.+++...+..+. ....+..++.++...|++++|+..|.+++.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888888865543222 234566788888888888888888888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-13 Score=145.57 Aligned_cols=240 Identities=12% Similarity=-0.048 Sum_probs=204.4
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
.+....++-.+-.++...+..++|+..+.+++..+|.+..+|...+.++...| .+.+++.++.+++..+|.+..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 44555666666677888899999999999999999999999999999999998 68999999999999999999999999
Q ss_pred hhhhhcccch--HHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 001357 600 GDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1093)
Q Consensus 600 ~~~~~~~g~~--~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 677 (1093)
++++.+.|.. ..++..+.+++...|. +..++...+.+ +... |.+++|++++.++++.+|.|..+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchhH
Confidence 9999888874 7789999999999887 88899999988 8777 99999999999999999999999
Q ss_pred HHHHHHHHHhc---CCc----hhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhcC
Q 001357 678 ANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 678 ~~~la~~~~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~ 746 (1093)
|+..+.++... |.+ +.++.+..+++...| .+..+|..++.++.. .++..+|+..+..++.. .
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~ 251 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--D 251 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--c
Confidence 99999998776 333 478888899999998 788999999999988 45667899998888775 5
Q ss_pred CCCHHHHHHHHHHHHhhc------------------cHHHHHHHHHHHHHhCC
Q 001357 747 NTDAQILLYLARTHYEAE------------------QWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 747 ~~~~~~l~~la~~~~~~g------------------~~~~A~~~~~~al~~~P 781 (1093)
+..+.++..|+.+|.... ...+|.++|..+-+.+|
T Consensus 252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 667889999999998632 23556666666644444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-12 Score=144.40 Aligned_cols=327 Identities=16% Similarity=0.136 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
.+++.....++...|++++|+.++..... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 35556667777888888888888876554 23456677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHcCCC----------
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKY---------- 592 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~---------- 592 (1093)
.-..|.++..+|++++|...|..++..+|++...|..+..+..... +...-..+|+......|..
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 7778888888888888888888888888888777777777663322 3455566666666655543
Q ss_pred ----------------------hhHHHHhhhhhhcccchHHHHHHHHHhhhc---C---C--------CCCh--HHHHHh
Q 001357 593 ----------------------PNALSMLGDLELKNDDWVKAKETFRAASDA---T---D--------GKDS--YATLSL 634 (1093)
Q Consensus 593 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~---~--------~~d~--~~~~~l 634 (1093)
|.++.++-.+|....+..-...++...+.. . + .+.. ++++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 223344444444333332222333332211 0 0 1111 333444
Q ss_pred HhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCch
Q 001357 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 714 (1093)
Q Consensus 635 ~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (1093)
+.. |... |++++|+.++++++...|+.+..+...|.+|.+.|++.+|...++.+..+++ .+-
T Consensus 201 Aqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DR 262 (517)
T PF12569_consen 201 AQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADR 262 (517)
T ss_pred HHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhH
Confidence 544 5555 9999999999999999999999999999999999999999999999999986 445
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC-CC------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--Ccc
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS--NYT 785 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~--~~~ 785 (1093)
-+-...+..+++.|++++|...+....+.-.++ .+ .+.....|.+|++.|++..|++.|..+.+..-. +..
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 555667888999999999999954433321111 11 223346799999999999999999998887653 344
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCChHHHhhhchhhHHHHHHHHHHHHHHHhhCC
Q 001357 786 LRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAAS 838 (1093)
Q Consensus 786 ~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~ 838 (1093)
+-||. .|+.++..+.+-...+.-+.+.. ...-+.....|++++-.|....
T Consensus 343 fDFH~-Yc~RK~t~r~Y~~~L~~ed~l~~--~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 343 FDFHS-YCLRKMTLRAYVDMLRWEDKLRS--HPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred ccHHH-HHHhhccHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhcCc
Confidence 45554 45788777666665554444443 2224556788889888887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-12 Score=146.23 Aligned_cols=306 Identities=15% Similarity=0.076 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 158 (1093)
....+..++.+|...|... .|...+.++....|.+ ....+..+.++...|++++|...+++++..+
T Consensus 5 ~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 5 FALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred cHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3556778888888887655 5666777766666644 4567788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
|++..++.. +..++..|.+..+...+.+++ ..+|.. ...+..+|.++..+|++++|...+++++.++|++..++
T Consensus 74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 999988775 666666655554444444444 344554 55667789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH-HH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YY 309 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~ 309 (1093)
..++.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+.+++.++...+..+..... -.
T Consensus 152 ~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 152 HAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 999999999999 9999999999999887433 345689999999999999999999986443211111111 00
Q ss_pred -HHHHHHHhcCCHHHHHHH--H-HHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cH
Q 001357 310 -NLARSYHSKGDYEKAGLY--Y-MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NC 376 (1093)
Q Consensus 310 -~la~~~~~~g~~~~A~~~--~-~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~ 376 (1093)
.+...+...|....+..+ + .......+. +.........+.++...|+.+.|...+..+...... ..
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 222333333432222222 1 111110001 111222234556666666677666666665442211 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 377 ETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
.+....+.++...|+++.|+..+..++.
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555666666665555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-12 Score=126.73 Aligned_cols=421 Identities=16% Similarity=0.110 Sum_probs=232.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001357 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (1093)
....+|..|+.++..-...+|.+...+..+|.||+...+|..|-.+|+++-...|.. ...++..+..+++.+.+..|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666 5556666666666666666666
Q ss_pred HHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 219 AFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 219 ~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
+...+... |. ...++..-+.+....++ +..+..+. +.-| +........|.+.++.|+|+.|.+-|..++
T Consensus 100 V~~~~~D~-~~L~~~~lqLqaAIkYse~D---l~g~rsLv----eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 100 VAFLLLDN-PALHSRVLQLQAAIKYSEGD---LPGSRSLV----EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHhcCC-HHHHHHHHHHHHHHhccccc---CcchHHHH----HhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 65554332 11 11222223333333444 33333322 2223 345566666777777777777777777777
Q ss_pred hccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1093)
..++..| ..-++++.++++.|++..|+++....+... ...|........-|.--...|+. +.....+
T Consensus 172 qvsGyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~Sa------ 239 (459)
T KOG4340|consen 172 QVSGYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQSA------ 239 (459)
T ss_pred hhcCCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHHH------
Confidence 6654433 566777777777777777777777666532 12222211000000000001111 1111111
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 001357 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 452 (1093)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 452 (1093)
-.++++..+.++++.++++.|.+.+..+--.. .-++..+.+++..-..+++.....-+.-.+.+. +.+.+++.
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-----PfP~ETFA 314 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-----PFPPETFA 314 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-----CCChHHHH
Confidence 24567777888889999988887765442211 124666777776666667766666665555542 34678888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHH
Q 001357 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 532 (1093)
Q Consensus 453 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 532 (1093)
++-.+|++..-|+.|...+-+--... . .-.....+++-
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------y-k~L~~Yly~LL 352 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------Y-KFLTPYLYDLL 352 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------H-HHhhHHHHHHH
Confidence 88888888888888877764422210 0 00112223332
Q ss_pred HHH-HhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccc
Q 001357 533 RLL-EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 608 (1093)
Q Consensus 533 ~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 608 (1093)
..+ ...-..++|.+-+..+-....+.......-.......++ ...++.-|+.+++.. ..+....+++|+...+
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLED 429 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccc
Confidence 222 223445555554444332211111100000111111111 233455555555543 4567788999999999
Q ss_pred hHHHHHHHHHhhhcCCCCChHH
Q 001357 609 WVKAKETFRAASDATDGKDSYA 630 (1093)
Q Consensus 609 ~~~A~~~~~~~l~~~~~~d~~~ 630 (1093)
|..+.+.|.........++.+-
T Consensus 430 y~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 430 YPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred cHHHHHHHHHHHhhhcccceee
Confidence 9999999999998877766653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=122.32 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
++..|..|++++..-...+|.+...+..+|.||+...+|..|..+|++.-...|......+..|..+++.+.+..|+.+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
..+... |+......-.-+.+.+..+++..+....++.- ..+........|.+.++.|+ ++.|++.|+.+++...
T Consensus 102 ~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhcC
Confidence 876543 44334445556777788888888887776531 12567788899999999998 9999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC-CCCC-------------------------chHHHHHHHHHHHhcC
Q 001357 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPT-------------------------KSHSYYNLARSYHSKG 319 (1093)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~-------------------------~~~~~~~la~~~~~~g 319 (1093)
..+.+.+.++.+.++.|++..|+++...++...- ..|. ..+++...+-++++.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 9999999999999999999999999988875321 1110 1345556667777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
+++.|.+.+..+--.. ...-.+..+.+++..- ..+++.....-+.-++.++|--.+.+.++-.+|++..-|+-|..++
T Consensus 256 n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRA-EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cHHHHHHHhhcCCCcc-cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 7777766554332110 0111223344444332 2345666666666677777766677777777777777777666655
Q ss_pred HH
Q 001357 400 RK 401 (1093)
Q Consensus 400 ~~ 401 (1093)
-+
T Consensus 334 AE 335 (459)
T KOG4340|consen 334 AE 335 (459)
T ss_pred hh
Confidence 43
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-12 Score=136.36 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=135.4
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1093)
.++..+..++.+|..++..|++++|+..|++++..+|.++ .+++.+|.+++..|++++|+..|++++...|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999999876 57899999999999999999999999999998733
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 198 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
.+++.+|.++... |+++.|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 3678888888776 566666777777666666665544333222111100 0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 001357 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1093)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1093)
......+|..|+..|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 012234555666666666666666666665555555566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1093)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1093)
.++...|++++|+.+++.+....|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666666666655444
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-12 Score=135.33 Aligned_cols=193 Identities=22% Similarity=0.332 Sum_probs=154.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 232 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 232 (1093)
++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|+++.|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455688999999999999999999999999999999873 256899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHhh-----hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH
Q 001357 233 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1093)
Q Consensus 233 a~~~la~~~~~~~-----~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1093)
+++.+|.++.... +.+.+.+|+..|.+++..+|.+..+.. +
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----------------------------------a 154 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD----------------------------------A 154 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH----------------------------------H
Confidence 6888888887651 112388899999999888888764431 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001357 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1093)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1093)
+..++.... .. ......+|.+++..|++.+|+..|..++...|+. +.+++.+|.
T Consensus 155 ~~~~~~~~~--------------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 155 KKRMDYLRN--------------RL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHH--------------HH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 111111111 00 1224578889999999999999999999997764 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
++...|++++|..+++.+....|
T Consensus 212 ~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 212 AYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999988877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-13 Score=126.43 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
-..+|++++.++|++ ++.+|.++...|++++|+..|+.++..+|.+..+++.+|.++...|++++|+..|++++..+
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 357889999999874 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
|.+ +.+++.+|.|+..+|++++|+..|.+++.+.|+++..+..++.+....
T Consensus 89 p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999 788999999999999999999999999999999999998888766544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-08 Score=121.93 Aligned_cols=228 Identities=13% Similarity=0.101 Sum_probs=150.7
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---- 196 (1093)
...+|.+..+|..++..+...|++++|+..++..+...|+.+.+++.+|.++++.+++.++.-+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4557889999999999999999999999999999999999999999999999999998888766 6666555541
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001357 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1093)
Q Consensus 197 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1093)
..+++.+|.||-++|+.++|..+|+++++.+|+|+.++..+|..+... + .++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 134555666666666666666666666666666666666666655555 4 5666666665554
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001357 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1093)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1093)
. |+..++|..+..+..+.+... |.+.+.+.. +.++..... .....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~----------------i~~ki~~~~-~~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLR----------------IERKVLGHR-EFTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHH----------------HHHHHHhhh-ccchhH
Confidence 3 333444444444444444322 222222221 112221111 011122
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1093)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1093)
..+.-+-..|...++|++++.++..+++.+|.|..+...++.||..
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3344455677778888888888888888888888888888888874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-10 Score=116.79 Aligned_cols=298 Identities=18% Similarity=0.114 Sum_probs=205.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
..-|..-+..|+|.+|.....+.-+..+....+++.-|...-.+|+++.|-.++.++-+..+++...+.+..+..+...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34566667778899999888888777777778888888888888999999888888888866665677788888888888
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH---HHHHHHH--HHHHcCChHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM---ALNYLAN--HFFFTGQHFL 286 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~---~~~~la~--~~~~~g~~~~ 286 (1093)
+++.|......++...|.++.++.....+|...|+ +...+..+.+.-+..--+.. -+-..+. ++-..++-..
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 88999988888888889888888888888888888 77777666666554322111 1111111 1111222222
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
+..+....-..+.....++.....++.-+...|++++|.+....+++.. -+. . +..-.-....+++..-++..+
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~-~--L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDP-R--LCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCh-h--HHHHHhhcCCCCchHHHHHHH
Confidence 2221111111111122334666677777888888888888888887632 111 1 111122346677788888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
+.++..|+++..+..||.+|.+.+.|.+|..+|+.+++..|+ ...+..++.++ ..|+...|...++.++...
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888877663 55677778888 8888888888777777443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=131.38 Aligned_cols=298 Identities=20% Similarity=0.198 Sum_probs=211.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhhHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~ 350 (1093)
+.-+++.|++...+.+|+.+++....+ ...+.+|..+|.+|+.+++|++|+++...-+. .+++....+.+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 445566666666666676666554222 22345677788888888888888887654332 22233344455667888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 404 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~l~~~l~ 404 (1093)
++.-.|.|++|+.++.+-+.... ....+++++|.+|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888776532 234688899999987754 3456666666555
Q ss_pred hCCC------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 405 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 405 ~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
+... ...++-+||..| ..|+++.|+...+.-+.+....++... -.++.++|.+|.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4321 245677788888 899999999999888888777655433 46889999999999999999999999887
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 001357 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1093)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1093)
+.... ......+...|.+|..|.....+..|+.++.+-+.+..
T Consensus 264 LAiel-------------------------------------g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIEL-------------------------------------GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHh-------------------------------------cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53211 12334667889999999999999999999998776433
Q ss_pred ------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CC--ChhHHHHhhhhhhcccch
Q 001357 557 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GK--YPNALSMLGDLELKNDDW 609 (1093)
Q Consensus 557 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~l~~~~~~~g~~ 609 (1093)
....+++.||..+...|..+.|+.+....+++. .. ...+..++..+.+..|..
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 346788999999999999999999888777653 22 223455565555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-11 Score=126.65 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhc---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCC
Q 001357 321 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQ 391 (1093)
Q Consensus 321 ~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~ 391 (1093)
++.|.++|..-++.. ...-....++-+||..|+-+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 345555555444321 122223456788999999999999999988776665322 24688999999999999
Q ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 001357 392 IEKAQELLRKAAKID------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~ 463 (1093)
++.|+++|+..+.+. .......+.|+..| ...++.+|+.++.+-+.+....++.. ....++.+|..|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 999999999987542 22356678889999 88899999999999888877654332 36788999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 001357 464 FESAHQSFKDALGD 477 (1093)
Q Consensus 464 ~~~A~~~~~~al~~ 477 (1093)
.++|+.+....+..
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888774
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-11 Score=120.84 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 184 (1093)
+...+++..+.+++..+|+++..|+.+|.+|...|+++.|+..|++++..+|+++.++..+|.++ ...|+ +.+|..+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44456666677777777777777777777777777777777777777777777777777777654 45555 4677777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
++++++.+|++ ..+++.+|.+++..|++++|+.+|++++++.|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777766 55666677777777777777777777776666544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-09 Score=111.73 Aligned_cols=295 Identities=15% Similarity=0.112 Sum_probs=229.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhh
Q 001357 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQAN 245 (1093)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~ 245 (1093)
.-|..-+..|+|.+|.+...+.-+..+.. ...++.-+.+--++|+++.|-.++.++-+..++ ...+.+..+.+....|
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34555667899999999999987777665 566777888999999999999999999998544 5567888999999999
Q ss_pred hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH--HHhcCC---
Q 001357 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS--YHSKGD--- 320 (1093)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~--~~~~g~--- 320 (1093)
+ +..|...+.+++...|.++.++.....+|+..|++.....++..+.+..-.++....-+-..+.. +...++
T Consensus 168 d---~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 D---YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred C---chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9 99999999999999999999999999999999999999999998886543333222222222111 111222
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
.+.-..+++..-... ...+.....++.-+..+|+.++|.+....+++..-+ +.....+ -....++...=++..+
T Consensus 245 ~~gL~~~W~~~pr~l---r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~--~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKL---RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLI--PRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHh---hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHH--hhcCCCCchHHHHHHH
Confidence 222222333333322 223445667788899999999999999999987543 2322222 2345678889999999
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
+.++..|+++..+..||.++ ..+.|.+|..+|+.++...+ +...+..+|.++.+.|+...|...+++++..
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999998887644 3788999999999999999999999999853
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.7e-12 Score=118.71 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=114.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
..+|+++++.+|++ +..+|.++...|++++|+..|.+++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46789999999875 5678999999999999999999999999999 7889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
|+++.+++.+|.++...|+ +.+|+..|.+++...|+++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999988887776654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-09 Score=140.44 Aligned_cols=388 Identities=13% Similarity=0.022 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALGH 384 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~ 384 (1093)
..+...+..+...|++..|+..+..+- ..+.........+..+...|++..+..++..+-. ....++......+.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 445556677778888888887665543 2222233345566777778888776666654311 11223445567788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 454 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 454 (1093)
++...|++++|...+..+....+. ...+...++.++ ..|+++.|..++..++...+..........+..+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 888889999999998887654221 123344456666 8899999999998887753321110113456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 455 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
|.++...|+++.|...+.+++....... .......++.+++.+
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g-------------------------------------~~~~~~~~~~~la~~ 540 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHD-------------------------------------VYHYALWSLLQQSEI 540 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------------------------------chHHHHHHHHHHHHH
Confidence 8899999999999999999886421000 111234466788999
Q ss_pred HHhcCChHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-----ChhHHHHhhh
Q 001357 535 LEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGD 601 (1093)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~ 601 (1093)
+...|++..|...+.+++.... .....+..++.++...|++++|...+.+++..... ....+..++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 9999999999999998887421 12334567788888899999999999998876432 2345667888
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCCh-HHH-HH---hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHH
Q 001357 602 LELKNDDWVKAKETFRAASDATDGKDS-YAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1093)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~l~~~~~~d~-~~~-~~---l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (1093)
++...|++..|...+..+......... ..+ .. +....+... |+.+.|..++.......+....
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHHHhcCCCCCccch
Confidence 999999999999999988764322111 100 00 111102222 6777777777665543322221
Q ss_pred ----HHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q 001357 677 ----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 677 ----a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 746 (1093)
.+..++.++...|++.+|...|.+++........ .....++..+|.++..+|+..+|...+.+++..+..
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1356778888888888888888888876432111 123456777888888888888888888888887643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-09 Score=135.03 Aligned_cols=345 Identities=15% Similarity=0.111 Sum_probs=252.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--------hHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--------PGAIRL 201 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--------~~~~~~ 201 (1093)
....+..+...|++..+...+..+-. ....++......+.+++..|++.+|..++..+....+.. ...+..
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44456777888988887777665411 112334456778888899999999999999887653221 234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC------cHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY------CAMA 270 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~------~~~~ 270 (1093)
.++.++...|+++.|...+.+++...|... .++..++.++...|+ +..|...+.+++..... ...+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 678889999999999999999998655422 345677888888888 99999999998865321 1345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCC-----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCCchh
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIF 343 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~ 343 (1093)
+..++.+++..|+++.|...+.+++...... +.....+..+|.++...|++++|...+.+++..... ......
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 6778999999999999999999988653321 222345667899999999999999999998874321 122345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEKAQELLRKAAKIDPRDA----QA 412 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~----~~ 412 (1093)
++..++.++...|+++.|...+..+....+.. .... ......+...|+.+.|...+.......+... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 56778999999999999999999987753321 1111 1123445567899999998877654322222 12
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
+..++.++ ..|++.+|...+.+++......+... ...++..+|.++...|+.++|...+.+++...
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45678888 89999999999999998866644332 24678889999999999999999999999864
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-11 Score=142.30 Aligned_cols=259 Identities=13% Similarity=0.080 Sum_probs=191.6
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
..|.+..++..++..+...+++++|+.++...+..+|+....|+.+|.++...+++..+..+ .++...+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------- 94 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------- 94 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence 68889999999999999999999999999999999999999999999999988887666544 4444433
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 001357 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (1093)
...+| .++.++-..+...+. ..+++..+|.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 95 -----~~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 95 -----QNLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred -----cccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 33344 333333333333333 56789999999 9999 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----------
Q 001357 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---------- 749 (1093)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 749 (1093)
++|..|... ++++|+.++.+++... ...++|..+..++++.+..-+..-+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998863 3334555666666555554222111
Q ss_pred --------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH--HHhhhcCCChHHHhhhchhh
Q 001357 750 --------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA--STLQKTRRTADEVWHDNTVL 819 (1093)
Q Consensus 750 --------~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 819 (1093)
+.++.-|-..|...++|++++.+|+.++..+|.|..+++.++.||...-. ..+....+ +..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~-~s~l~~----- 288 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLK-MSDIGN----- 288 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHH-Hhcccc-----
Confidence 33444444778888999999999999999999999999999999763221 11111111 112222
Q ss_pred HHHHHHHHHHHHHHHh
Q 001357 820 RVAELENAVRVFSHLS 835 (1093)
Q Consensus 820 ~~~~l~~a~~~~~~l~ 835 (1093)
.+.....++.-|+.+.
T Consensus 289 ~~~~~~~~i~~fek~i 304 (906)
T PRK14720 289 NRKPVKDCIADFEKNI 304 (906)
T ss_pred CCccHHHHHHHHHHHe
Confidence 3445667777777653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.2e-10 Score=109.95 Aligned_cols=211 Identities=16% Similarity=0.060 Sum_probs=170.0
Q ss_pred HHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhh
Q 001357 51 FKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPST 130 (1093)
Q Consensus 51 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~ 130 (1093)
+...+.++.+++.+..+.-....-+ ..+.-.++-.+..+.+..|+.. -|..+++......|.+..+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~---g~e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGAL---GDEIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRV 88 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhccc---CchHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhH
Confidence 3445566666666665422111000 1122334444444445555555 7899999988777999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
....|..+-..|++++|+++|+..+..+|.|...+.....+...+|+-.+|++.+...+...+.+ ..+|..++.+|...
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999888889999999999999999999999999 78899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
|+|.+|.-+++.++-+.|.++..+..+|.+++..|-..++.-|..+|.++++++|.+..+++.+..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999999999999999999998888888999999999999999977777665433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-08 Score=111.18 Aligned_cols=547 Identities=14% Similarity=0.115 Sum_probs=261.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHH--------HH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIV--------LE---ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~a--------l~---~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1093)
..+|-.+|..+....+++-|.-++-.+ +. .+|++ .-...|.+...+|-.++|+.+|.+.-+
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 346777777777777776666665432 11 12322 223344455666777777777766543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
+-.+-..|...|.+++|.++-+.-=.+ .-...++..+..+...++ ...|+++|+++-... -.
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D---i~~AleyyEK~~~ha----------fe 890 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD---IEAALEYYEKAGVHA----------FE 890 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc---HHHHHHHHHhcCChH----------HH
Confidence 222445566666666666654432111 112345556665556666 677777776531100 00
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
++....++..+++.|-+- ..+...|.+.|..+...|+.+.|+.+|..+-+ |+.+..+.+-+|
T Consensus 891 v~rmL~e~p~~~e~Yv~~-------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRR-------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQG 952 (1416)
T ss_pred HHHHHHhChHHHHHHHHh-------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeecc
Confidence 011111111111111111 12235666667777777777777777766654 444445555555
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-C-------------HHHHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR-D-------------AQAFIDL 416 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------~p~-~-------------~~~~~~l 416 (1093)
+.++|..+.++. .+..+.+.+|..|...|++.+|+.+|.++-.. ... + +.-....
T Consensus 953 k~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 953 KTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred CchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 555554443332 34445555555555555555555555544221 000 0 0001111
Q ss_pred HHHH-hcC-CHHHHHHHHHHH------------------HHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 417 GELL-ISS-DTGAALDAFKTA------------------RTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475 (1093)
Q Consensus 417 a~~~-~~~-~~~~A~~~~~~a------------------~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 475 (1093)
+..| ..| ....|...|.++ +.+. .+.....++.++..-+..+....+|++|..++-.+.
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2222 222 333333333221 2222 233444568999999999999999999998865554
Q ss_pred hcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc----CCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001357 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN----DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1093)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1093)
......... ..+....-+.+.+ .............++..+|.++.++|.|..|.+-|.++
T Consensus 1108 ~~~~AlqlC----------------~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1108 EFSGALQLC----------------KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHH----------------hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 321100000 0011111111111 11111112234568888999999999999999888774
Q ss_pred HHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHH
Q 001357 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631 (1093)
Q Consensus 552 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~ 631 (1093)
-. .+.....+++.|+.++-.-+.. -....++| .++.-|++.-+|..--+.++.++..+.+ ..++
T Consensus 1172 Gd--------Kl~AMraLLKSGdt~KI~FFAn-----~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tFYTK--gqaf 1235 (1416)
T KOG3617|consen 1172 GD--------KLSAMRALLKSGDTQKIRFFAN-----TSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETFYTK--GQAF 1235 (1416)
T ss_pred hh--------HHHHHHHHHhcCCcceEEEEee-----ccccceee-eehhhhhhhcccccChHHHhhhHhhhhc--chhH
Confidence 32 2223344556666544221110 01112222 2333445555555555555555443332 2233
Q ss_pred HHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCC
Q 001357 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711 (1093)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 711 (1093)
-.|++. |-..+.-+.- +-.+|++|...++.+. .++.+...-..+...|..+.+..
T Consensus 1236 d~LanF-Y~~cAqiEie----e~q~ydKa~gAl~eA~--------------kCl~ka~~k~~~~t~l~~Lq~~~------ 1290 (1416)
T KOG3617|consen 1236 DHLANF-YKSCAQIEIE----ELQTYDKAMGALEEAA--------------KCLLKAEQKNMSTTGLDALQEDL------ 1290 (1416)
T ss_pred HHHHHH-HHHHHHhhHH----HHhhhhHHhHHHHHHH--------------HHHHHHHhhcchHHHHHHHHHHH------
Confidence 446666 6555332110 1133333333322221 11111111111222222222211
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
....+.+..-.+|. .+....+...+.++.. |.-++ ..++..|...|....+|..|.+.+..+-...|+-
T Consensus 1291 a~vk~~l~~~q~~~--eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1291 AKVKVQLRKLQIMK--EDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHHHHHHHHHhh--hhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 01111111112222 2455555555555554 12222 5677888899999999999999999999999964
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=113.46 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+...+-.....+|.+..+ +..+..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..+.++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555555666778888888 888888899999888888888888888888888888888899999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
.|++ ..+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++-.|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9988 78888999999999999999999999999999999999999988888888 8888888888888877788888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETA 294 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~a 294 (1093)
..|+.+....|++..|..+..+-
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHhhcCChHHHHhhcccc
Confidence 88888888888888877766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=117.63 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HHhcC--HH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 731 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~-~~~g~--~~ 731 (1093)
++.++++..+++++..+|++..+|..+|.+|...|+++.|+..|++++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 8899999999975 67787 59
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 732 ~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
+|...|+++++. ++.++.++..+|.+++..|++++|+.+|++++.+.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999998 7778999999999999999999999999999999997643
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-09 Score=106.85 Aligned_cols=209 Identities=18% Similarity=0.063 Sum_probs=171.0
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 423 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
.+.++-++.....+...+.. -.+....++-.+..+....|+.+.|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 34455555555554444332 1112245556667777888999999999988776
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
..|....+.-..|..+...|++++|+++|..++..+|.+..++-+...+...+|..-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33677888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 582 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
+...+..++.+.++|..++.+|+..|+|.+|.-+++.++-..|. .+..+..++.+.|... .. .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~g-g~---------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQG-GA---------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHh-hH---------HHHHHHH
Confidence 99999999999999999999999999999999999999988887 6666678899844444 22 6789999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 001357 662 ELYTRVIVQHTSNLYAANGAGVVL 685 (1093)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~ 685 (1093)
++|.++++++|.+..+++++-.+.
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999999988875543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=128.83 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
....+|..+...|-...|+.|+++. ..+.....+|..+|... +|..+..+-+
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~l 451 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQEL 451 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHh
Confidence 4466777788888888887777753 34555667777777544 6666666666
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
+ .|+++..|..+|.+....--|++|..+++.. +..|...+|...++.++|.++...++..+.++|-. ...|+
T Consensus 452 e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf 523 (777)
T KOG1128|consen 452 E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWF 523 (777)
T ss_pred c-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHH
Confidence 6 5667777777777766666666666666554 23456666666677788888888888888888877 66778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.+|.|.++++++..|..+|.+++.++|++..+|.+++..|...+. -.+|...+.++++.+-.+..+|-+...+....
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 888888888888888888888888888888888888888887777 77777778888777766666676666666677
Q ss_pred CChHHHHHHHHHHHhcc
Q 001357 282 GQHFLVEQLTETALAVT 298 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~ 298 (1093)
|.+++|++.+.+.+...
T Consensus 601 ge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 77777777766666443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-06 Score=101.21 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 734 (1093)
+.+-+|+-+++..+..+|.|...-..+..+|...|-+..|...|..+--..- ....+=+.+-..+...|++.-|.
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I-----Q~DTlgh~~~~~~~t~g~~~~~s 527 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI-----QTDTLGHLIFRRAETSGRSSFAS 527 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh-----hhccchHHHHHHHHhcccchhHH
Confidence 6788899999999999999999888899999988999999988876633221 11111112223344568888888
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001357 735 KMYQNCLRKFYYNTDAQILLYLARTHY 761 (1093)
Q Consensus 735 ~~~~~al~~~~~~~~~~~l~~la~~~~ 761 (1093)
..+...++.| .....++..+++.+|.
T Consensus 528 ~~~~~~lkfy-~~~~kE~~eyI~~AYr 553 (932)
T KOG2053|consen 528 NTFNEHLKFY-DSSLKETPEYIALAYR 553 (932)
T ss_pred HHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 8888888876 3333444455555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.6e-11 Score=111.78 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
..|.+++..+|.+....+.+|.+++..|++++|...|+.++..+|.++.++..+|.+++..|++++|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
+ ...++.+|.++...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77889999999999999999999999999999876643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=119.97 Aligned_cols=223 Identities=19% Similarity=0.180 Sum_probs=196.1
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1093)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la 417 (1093)
-|........++.++...|-...|+..|++. ..|.....||...|+..+|..+..+-++ .|+++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 4556667788999999999999999999875 4566778899999999999999999888 788899999999
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 418 ~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
.+. ...-|++|.++.+.. +..+...+|......++|.++..+|+..+.
T Consensus 465 Dv~~d~s~yEkawElsn~~-----------sarA~r~~~~~~~~~~~fs~~~~hle~sl~-------------------- 513 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI-----------SARAQRSLALLILSNKDFSEADKHLERSLE-------------------- 513 (777)
T ss_pred hhccChHHHHHHHHHhhhh-----------hHHHHHhhccccccchhHHHHHHHHHHHhh--------------------
Confidence 988 655566666554432 234556667777778999999999999998
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHH
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 576 (1093)
.+|....+||.+|.+..+.+++..|...|...+...|++..+|++++..|...++..
T Consensus 514 -----------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 514 -----------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred -----------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence 567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcC
Q 001357 577 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1093)
Q Consensus 577 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 623 (1093)
+|...++++++.+-.+..+|-|...+..+.|.+++|++.+.+.+...
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988753
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=108.33 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1093)
..+...+-.....+|.+..+ ..++..++..|+-+.++.+..++...+|.+ ..+...+|...++.|++..|+..|.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666677777889999999 999999999999999999999999889988 6667779999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc
Q 001357 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1093)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 304 (1093)
.+.|++..+|..+|.+|.+.|+ ++.|...|.+++++.|..+.+.++++..++-.|+++.|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999888554 456
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 305 SHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
..+..+++.+....|++..|.....+-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6888899999999999998877665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.1e-10 Score=131.57 Aligned_cols=155 Identities=14% Similarity=-0.007 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.++..+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 34444444556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
.|++ ...++.+|.++.++|++++|..+|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...
T Consensus 150 ~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 150 GSSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred CCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHH
Confidence 9999 77889999999999999999999999999899999999999999999998 999999999998886554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-05 Score=91.12 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=53.7
Q ss_pred cCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 001357 622 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (1093)
Q Consensus 622 ~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (1093)
+.+..|+..+..-++. |... .+|++|..++-.+-+. .-+.-++...+..-..++-+.+
T Consensus 1074 Ld~~sDp~ll~RcadF-F~~~------------~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADF-FENN------------QQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred cCCCCCHHHHHHHHHH-HHhH------------HHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhc
Confidence 4455666666666666 6666 7777777766544321 1111222222332222222222
Q ss_pred HHHh-cCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 702 QEAA-SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 702 ~~~~-p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
--.. ...+......++..+|.+..++|.|..|-+-|.+|=.+
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 1000 00011123567788899999999999998888777544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.1e-10 Score=106.21 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=109.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
..|++++..+|++..+.+.+|.+++..|++.+|+..|++++..+|.+ ..+++.+|.++..+|+++.|...|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999998 77889999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
.++..++.+|.++...|+ +.+|+..|+++++.+|.+....
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchHH
Confidence 999999999999999998 9999999999999999877543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=103.11 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=99.8
Q ss_pred HhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001357 121 SRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 121 ~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
..++ ++.-...+.+|..++..|++++|..+|+.+...+|.++..|+++|.++..+|+|.+|+..|.+++.++|++ +.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chH
Confidence 3455 66778899999999999999999999999999999999999999999999999999999999999999998 788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
++.+|.|++.+|+.+.|+..|+.++...-
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998763
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6e-06 Score=95.23 Aligned_cols=470 Identities=13% Similarity=0.022 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.++|.+|++.+.+.++..|+.+.+....|.++++.|++++|..+++..-...+++...+-.+-.+|..+|++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45677999999999999999999999999999999999999988888777778888888889999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhH------HhHHHHHHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEA------AGIRKGMEKMQR 259 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~------~~~~~Al~~~~~ 259 (1093)
+++..+|. ....+.+=.+|.+-+.|.+-.++--++.+..|.++..+.....+.+.. ... --..-|...+++
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99999998 456677788888888887777666666667888776544444433332 110 012234445555
Q ss_pred HHHhC-CCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 260 AFEIY-PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 260 al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
.+... +-... =....-.++...|.+++|..++..-+... ..+.....-......+...+++.+-.++..+++...
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-- 256 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-- 256 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--
Confidence 55544 21111 11222334556677777777774333211 112222333344556666777777777777776632
Q ss_pred CCCchhhHHH----H---------HHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 338 PHEFIFPYYG----L---------GQVQLKLGDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAA 403 (1093)
Q Consensus 338 ~~~~~~~~~~----l---------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 403 (1093)
++....+.. + +..+...+..+..++...+.+.....++. ++..+-.-+...|+.+++...|-+-+
T Consensus 257 -~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 257 -NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred -CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 222111111 1 11111122233333333333322111221 22222222235567777666665444
Q ss_pred HhCCCC------------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH-----
Q 001357 404 KIDPRD------------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF----- 464 (1093)
Q Consensus 404 ~~~p~~------------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~----- 464 (1093)
..-|-. +.....+...+ ..++...+...+.+.+ ..-.+....|.|
T Consensus 336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~----------------c~l~~~rl~G~~~~l~a 399 (932)
T KOG2053|consen 336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHL----------------CVLLLLRLLGLYEKLPA 399 (932)
T ss_pred CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHH----------------HHHHHHHHhhccccCCh
Confidence 322211 11111111111 1111111111111111 011111112211
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch---HHHHHHHHHHHHhcCC-
Q 001357 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK---VTVLFNLARLLEQIHD- 540 (1093)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~la~~~~~~g~- 540 (1093)
+.-..++.+..... . ..+++...+ ...+..+.+ ..+...+..++.+.++
T Consensus 400 d~i~a~~~kl~~~y----------------------e-~gls~~K~l----l~TE~~~g~~~llLav~~Lid~~rktnd~ 452 (932)
T KOG2053|consen 400 DSILAYVRKLKLTY----------------------E-KGLSLSKDL----LPTEYSFGDELLLLAVNHLIDLWRKTNDL 452 (932)
T ss_pred HHHHHHHHHHHHHH----------------------h-ccccccccc----cccccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 11122221211100 0 000000000 001111111 1122334455666665
Q ss_pred --hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 541 --TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 541 --~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
+-+|+-+++..+..+|.++.+...+..+|...|-+..|...|...--.+-..-.+-+.+-..+...|++..+...+..
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHH
Confidence 457888999999999999999999999999999999999988765322222222223344445566788888888887
Q ss_pred hhhcCCC
Q 001357 619 ASDATDG 625 (1093)
Q Consensus 619 ~l~~~~~ 625 (1093)
.+....+
T Consensus 533 ~lkfy~~ 539 (932)
T KOG2053|consen 533 HLKFYDS 539 (932)
T ss_pred HHHHHhh
Confidence 7775544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-10 Score=113.17 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.+-..|.-++..++|.+|+..|.++|.++|.|+..|-.+|.+|.++|.|+.|++.++.++.++|.. ..+|..+|.+|+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence 344567777777788888888888888888888888888888888888888888888888888877 6677778888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
+|++.+|+..|+++|+++|++...+..|..+-...+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888888888888877766666665555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-09 Score=124.94 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
+.-++-...-+.|.+..+..-|-+++.. ...|+ ....++..||.+...+|..+ +|..++..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~~ 113 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDY--VRRYP----HTELFQVLVARALEAAHRSD-----------EGLAVWRGIH 113 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHH--HHhcc----ccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHHH
Confidence 3444444455555555555544444321 01122 33677888888888888877 9999999999
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
.+.|++..+++.++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.+++
T Consensus 114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~ 192 (694)
T PRK15179 114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYV 192 (694)
T ss_pred hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988988 88899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
.+|.++...|+.++|...|++++.....-...+
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999876655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-09 Score=111.58 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|.-..++++.|..++..|+++.|+..+..++...|++ +.++...+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7788889999999999999999999999999999988 777888889999999999999999999999998888889999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1093)
..++..|+ +.+|+..++..+..+|+++..|..|+..|...|+..++ ....+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a--------------------~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA--------------------LLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH--------------------HHHHHHHHHhC
Confidence 99999988 78999999999999999999999999999988887544 34456677788
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001357 319 GDYEKAGLYYMASVKEI 335 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1093)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999998888754
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-08 Score=102.30 Aligned_cols=204 Identities=12% Similarity=0.072 Sum_probs=129.8
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIR 200 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~ 200 (1093)
..+..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|.+|+..|++.++.+|++ .+.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356778889999999999999999999999999988654 4889999999999999999999999999887 35567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.+|.++..++.- .|.....+++. ..+.....+|+..|+..+...|++..+-.
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~-------- 162 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTD-------- 162 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHH--------
Confidence 7777776554311 11111111110 01111244555566666666665542211
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1093)
|...+..+. ...+.--+.+|..|.+.|.|..|+.-++.++...+..+....+++.++.+|...|..++
T Consensus 163 ------A~~rl~~l~------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 163 ------ATKRLVFLK------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 111000000 00112334566777777777777777777777777667777777777777777777777
Q ss_pred HHHHHHHH
Q 001357 361 ALTNFEKV 368 (1093)
Q Consensus 361 A~~~~~~~ 368 (1093)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 76665443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-09 Score=116.32 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG--DFRSALTNFEKVLEIYPDNCETLKALG 383 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1093)
+.......+|...++++.|.+.+..+.+ ...+.....+..+.+.+..| .+.+|.-+|+.+....+.++.+++.++
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3444444455555555555555544433 22333333333333333333 355555555554444444555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001357 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (1093)
.+++.+|++++|...+.+++..+|.++.++.+++.+. ..|+.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555555555555544 44444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=114.76 Aligned_cols=260 Identities=15% Similarity=0.113 Sum_probs=174.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
...++..|+|..++..++ ....+|. .......+.+++..+|++...+.-+... ..|.. .....++..+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l--~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPEL--QAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCC--HHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhH--HHHHHHHHHHhCccch
Confidence 455677888888887666 2223332 3456677788888888887665444321 12333 2334445544444556
Q ss_pred HHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 214 GKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
+.++..++..+.... .++...+..|.++...|+ +++|+..+.+. .+.........++...++++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666655443221 244555666677777777 78888777643 46677777788888899999998888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
+.+.+.. .+..-+....+.+.+..| .+.+|..+|+.... ..+..+..+.+++.+++..|+|++|...+..++
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8876543 222233333333444444 69999999999876 445667888999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 001357 370 EIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~l~~~l~~~p~~~~~~ 413 (1093)
..+|+++.++.+++.+....|+. +.+.+++.++...+|.++.+.
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999988 667778888888899876553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.1e-08 Score=104.49 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=111.2
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
|.. ...++..+..++..|.++.|+..+...+...|+|+..+...+.+++..++ ..+|++.+++++.++|..+....
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 444 55677777777777777777777777777777777777777777777777 77777777777777777777777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.+|..|+..|++.+|+..++..+.. .|.++..|..++.+|..+|+..+|.. ..+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHH
Confidence 7777777777777777777777643 35666777777777777776655533 334455
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001357 353 LKLGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1093)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 66777777777777776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.5e-08 Score=100.41 Aligned_cols=201 Identities=14% Similarity=0.164 Sum_probs=143.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 234 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 234 (1093)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3577788999999999999999999999999999882 22358899999999999999999999999999865 446
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 314 (1093)
+.+|.++...+. ..+.....+++.+. .......|+..++..+...+.++-..++...+..+
T Consensus 110 Y~~g~~~~~~~~--------~~~~~~~~~~~~~r-----------D~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 110 YMRGLTNMALDD--------SALQGFFGVDRSDR-----------DPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHhhhhcch--------hhhhhccCCCcccc-----------CHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 666665544432 11111111211110 01112356777788887766554444444333322
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCC
Q 001357 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQ 391 (1093)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~ 391 (1093)
... + ..--+.+|..|.+.|.|..|+.-++.++...|+. .+++..++.+|...|.
T Consensus 171 ~~~--------------l---------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 171 KDR--------------L---------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHH--------------H---------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 211 1 1224578899999999999999999999998875 5799999999999999
Q ss_pred HHHHHHHHHHH
Q 001357 392 IEKAQELLRKA 402 (1093)
Q Consensus 392 ~~~A~~~l~~~ 402 (1093)
.++|..+...+
T Consensus 228 ~~~a~~~~~~l 238 (243)
T PRK10866 228 NAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHH
Confidence 99998877654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-08 Score=101.19 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1093)
.+..++..|..++..|+|.+|+..|+.++...|.+ +.+.+.+|.+++..|+|..|+..|++.+...|++ .+.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35677788888888888888888888888877765 5677888888888888888888888888888876 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.+|.+++.+..- .+ ....+.....+|+..|+..+...|+++.+-.
T Consensus 84 ~~g~~~~~~~~~---------~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQIPG---------IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHHHH---------HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhCcc---------ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 666666544110 00 0011222367777888888888877653321
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
|...+..+.. ..+.--+.+|..|+..|.|..|+..|+.+++..+..+....++..++.+|...|....|
T Consensus 129 -----A~~~l~~l~~------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 129 -----AKKRLAELRN------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -----HHHHHHHHHH------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred -----HHHHHHHHHH------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1111111110 11244556788888888888888888888887777777777888888888888887744
Q ss_pred H
Q 001357 362 L 362 (1093)
Q Consensus 362 ~ 362 (1093)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=106.99 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVG--KGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDS 181 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 181 (1093)
.-.+-|+++++..+.+.+.+...... +..++....+ .-.-...|. -..-+-.-|.-+++.++|.+|
T Consensus 29 esleva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eA 100 (304)
T KOG0553|consen 29 ESLEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAER--------HPVEILTPEEDKALAESLKNEGNKLMKNKDYQEA 100 (304)
T ss_pred hHHHHhHHHHHHHhCcchhhccccccccHHHHHHHhcc--------CcccccChHhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34557888888888877655432222 1111111111 000011110 134466778888999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
+..|.++|.++|.+ +.+|.+.+.+|.++|.++.|++..+.++.++|.+..+|..||.+|+.+|+ +.+|+..|++++
T Consensus 101 v~kY~~AI~l~P~n-AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk---~~~A~~aykKaL 176 (304)
T KOG0553|consen 101 VDKYTEAIELDPTN-AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK---YEEAIEAYKKAL 176 (304)
T ss_pred HHHHHHHHhcCCCc-chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc---HHHHHHHHHhhh
Confidence 99999999999999 78899999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcC
Q 001357 262 EIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g 282 (1093)
.++|++......|..+-...+
T Consensus 177 eldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 177 ELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ccCCCcHHHHHHHHHHHHHhc
Confidence 999999977666554444333
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-07 Score=97.67 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=114.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHH
Q 001357 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-----VPIEVLNNIG 455 (1093)
Q Consensus 382 la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~la 455 (1093)
....|.+..+...+..-.+.++.+..+.+.+.+..+..+ ..|++.+|.+.+... .+....+.. ....+++++|
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcc
Confidence 334445556666666666667766677777777778777 888888888776532 121111211 1235679999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 456 VIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
+++++.|.|.-+..+|.+++. .|..... + +.....-.-.......++|+.|..
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchhhHHhhhHH
Confidence 999999999999999999995 3321110 0 000000000233467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 001357 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 572 (1093)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 572 (1093)
|...|++-.|.+.|.++...+..++..|++++.+++..
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887643
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.3e-09 Score=115.17 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
+...|..++..|+|++|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ ..+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 77789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
|++++|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877765444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-07 Score=96.58 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALV 235 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~ 235 (1093)
.+..++..|..++..|+|.+|+..|+.++...|.. .+.+.+.+|.+++..|++..|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999999876 467789999999999999999999999999999865 4566
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1093)
.+|.++..... ..+ ......+...+|...++..+...+.++-...+...+..+-
T Consensus 84 ~~g~~~~~~~~-----~~~---------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 84 MLGLSYYKQIP-----GIL---------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHHHHHHHHH-----HHH----------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----cch---------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence 67766655422 111 0111223345678888888877766654444433332221
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQI 392 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~ 392 (1093)
..+ ..--+.+|..|.+.|.+..|+..++.+++..|+.. .++..++.+|..+|..
T Consensus 138 --------------~~l---------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 138 --------------NRL---------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp --------------HHH---------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred --------------HHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 111 12356689999999999999999999999999865 6899999999999998
Q ss_pred HHHH
Q 001357 393 EKAQ 396 (1093)
Q Consensus 393 ~~A~ 396 (1093)
..|.
T Consensus 195 ~~a~ 198 (203)
T PF13525_consen 195 QAAD 198 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.2e-05 Score=81.64 Aligned_cols=435 Identities=12% Similarity=0.041 Sum_probs=255.9
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001357 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1093)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1093)
++-++.+|.|..+|+.+..-+-.+ -+++....|++.+...|..+.+|...+...+..++|+.-..+|.++|..--+. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 566788999999999998877666 99999999999999999999999999999999999999999999998765443 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHH----HHHHHHh---hCCCcHHHHHHHHHHHHHhh---h---HHhHHHHHHHHHHHHHhC
Q 001357 198 AIRLGIGLCRYKLGQLGKARQ----AFQRALQ---LDPENVEALVALAVMDLQAN---E---AAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~----~~~~al~---~~p~~~~a~~~la~~~~~~~---~---~~~~~~Al~~~~~al~~~ 264 (1093)
-+.+.+-.+.-..|....++. +|+-++. .++.....|...+..+..-. . ..+++.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 222334444444455444333 3333333 35556666666555443221 1 112455555666666543
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCC-
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPH- 339 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~- 339 (1093)
-.+..-+. ++|..-+.-.+.+. ..-.+-.....|-.|...++....... ..|
T Consensus 168 m~nlEkLW---------~DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 168 MHNLEKLW---------KDYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cccHHHHH---------HHHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 22221111 11111111111111 000111122234455555544433110 001
Q ss_pred ---C-c------hhhHHHHHHHHHHcC------C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------
Q 001357 340 ---E-F------IFPYYGLGQVQLKLG------D--FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---------- 391 (1093)
Q Consensus 340 ---~-~------~~~~~~la~~~~~~g------~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---------- 391 (1093)
. . +..|.++...-...+ . -..-.-.+++++..-+.++++|+..+..+...++
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence 0 0 111222222111111 1 1122334566666666777777766655555544
Q ss_pred ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001357 392 ----IEKAQELLRKAAKID-PRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1093)
Q Consensus 392 ----~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g 462 (1093)
.+++..+|++++..- ..+...++.++..- ..- ..+.....+.+++.+.... ..-++.++...-.+..
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~----~tLv~~~~mn~irR~e 380 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID----LTLVYCQYMNFIRRAE 380 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC----CceehhHHHHHHHHhh
Confidence 677888888877543 33444455555433 222 2555566666666553321 2344555555556666
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH-HHhcCCh
Q 001357 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDT 541 (1093)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~ 541 (1093)
-...|..+|.++-+.. ..+. .++..-|.+ |...++.
T Consensus 381 GlkaaR~iF~kaR~~~-----------------------------------------r~~h--hVfVa~A~mEy~cskD~ 417 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDK-----------------------------------------RTRH--HVFVAAALMEYYCSKDK 417 (656)
T ss_pred hHHHHHHHHHHHhhcc-----------------------------------------CCcc--hhhHHHHHHHHHhcCCh
Confidence 7788888888887632 1111 233322322 5566899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cC-CChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG-KYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
.-|..+|+..++.+++.+..-+.....+...++-..+..+|++++.. .| ....+|..+......-|+...+++.-++
T Consensus 418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999998888888888888899999999999999887 22 2345777777777777887777776666
Q ss_pred hhhcCC
Q 001357 619 ASDATD 624 (1093)
Q Consensus 619 ~l~~~~ 624 (1093)
.....|
T Consensus 498 ~~~af~ 503 (656)
T KOG1914|consen 498 RFTAFP 503 (656)
T ss_pred HHHhcc
Confidence 554444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=92.49 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=74.2
Q ss_pred HhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 156 EAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 156 ~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+.+|.+++.++|+++.++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 344 5556667777777777777777777777777777777 56677777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1093)
+.+|.+++..|+ ...|...|+.++...
T Consensus 107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 777777777776 677777777666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-05 Score=85.59 Aligned_cols=330 Identities=12% Similarity=0.111 Sum_probs=165.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCC
Q 001357 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDN 161 (1093)
Q Consensus 102 ~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------------~~p~~ 161 (1093)
....-+++|..|..+++. +...|.-...|..++.+.+..|++--|..+|..+-. ...+-
T Consensus 452 gaaid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg 530 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG 530 (1636)
T ss_pred ccccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence 334457889999887765 567788888899999999988888777777754311 12223
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
...|-..|.+.....+|.+|..+|-. .+.. .. ..-+|..+.++++|+.+-+- .-.|.........-..+
T Consensus 531 t~fykvra~lail~kkfk~ae~ifle---qn~t--e~----aigmy~~lhkwde~i~lae~--~~~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILEKKFKEAEMIFLE---QNAT--EE----AIGMYQELHKWDEAIALAEA--KGHPALEKLKRSYLQAL 599 (1636)
T ss_pred chHHHHHHHHHHHHhhhhHHHHHHHh---cccH--HH----HHHHHHHHHhHHHHHHHHHh--cCChHHHHHHHHHHHHH
Confidence 34555566666666677777665532 1111 11 11234555666666654332 11222111111111222
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC---------CCCchHHHHHHH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---------GPTKSHSYYNLA 312 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~la 312 (1093)
+..|. -.+|- ++...+... .....+|...|....|......-...... .-...+.|-.-|
T Consensus 600 ~dt~q---d~ka~-------elk~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 600 MDTGQ---DEKAA-------ELKESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HhcCc---hhhhh-------hhccccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhh
Confidence 22222 11111 111001000 01123344444444433322110000000 001123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHH------H--hcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 313 RSYHSKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1093)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~al------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1093)
.+|.+..++++|+++|.+.- + .+.-+...+..--..|..+...|+++.|+..|-.+- .+.....
T Consensus 669 dlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaie 740 (1636)
T KOG3616|consen 669 DLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIE 740 (1636)
T ss_pred hHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHH
Confidence 66666666777777765432 1 111112222233446777777888888887775542 1222233
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
+......+.+|+.+++.+-... .....|-.++.-| ..|+++-|...|.++- .......+|-+.|+
T Consensus 741 aai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhcccc
Confidence 4445567777777776554322 1223445566667 7777777777665432 22334556777788
Q ss_pred HHHHHHHHHHHHh
Q 001357 464 FESAHQSFKDALG 476 (1093)
Q Consensus 464 ~~~A~~~~~~al~ 476 (1093)
+..|..+-.+...
T Consensus 807 w~da~kla~e~~~ 819 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG 819 (1636)
T ss_pred HHHHHHHHHHhcC
Confidence 8887777666543
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00014 Score=78.24 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=137.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 491 (1093)
..|-++++.++-++++....+..... . ..++-++..+-.-.|++.+|+.....+...+.....
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~-------- 358 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT-------- 358 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc--------
Confidence 34667778887777777655443222 1 245566788888899999999998888774421100
Q ss_pred hhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 001357 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAI 568 (1093)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~ 568 (1093)
.+-.....+.+.+.+|......|.++.|...|..+.+.... .+.+-.+++.+
T Consensus 359 -------------------------~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 359 -------------------------PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred -------------------------hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 00011235667788888888899999999999999875443 24456778888
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCCh----------hHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChH-----HHHH
Q 001357 569 AKARNNLQLSIELVNEALKVNGKYP----------NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLS 633 (1093)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~-----~~~~ 633 (1093)
|...|+-+.-.+.++ .++|.+. .+++..|...+.++++.+|...+.+.++.....|.. .++.
T Consensus 414 YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 998877554443333 3555532 267788888999999999999999999876543432 4455
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhC
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 671 (1093)
||.+ +... |+..++......++...
T Consensus 491 Ls~v-~lsl------------gn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 491 LSHV-FLSL------------GNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHH-HHHh------------cchHHHHhccchHHHHH
Confidence 6777 6666 77778877777666543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-07 Score=94.18 Aligned_cols=304 Identities=15% Similarity=0.098 Sum_probs=197.5
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCCchhhHHHHHHHHHH
Q 001357 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~ 354 (1093)
++...++.+++....+.+............+-.+..+...+|.|.+++.+--..++.. .+......++.+++..+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443322222233444455666777777777766544433311 1222334567888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hc
Q 001357 355 LGDFRSALTNFEKVLEIYPD-----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-IS 422 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~------~~~~~~la~~~-~~ 422 (1093)
..++.+++.+....+..... ...+...++.++..++.++++++.|+++++...++ ..++..|+.++ ..
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 88888888888777665322 23567778889999999999999999998764322 45778889999 88
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhh
Q 001357 423 SDTGAALDAFKTARTLLKKAGEE-VP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~-~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 497 (1093)
.++++|+-+..++..+....+-. .. ..+++.++..+...|..-.|.++.+++.++....
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~---------------- 239 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH---------------- 239 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh----------------
Confidence 99999999999999888776522 22 4677889999999999999999999998753211
Q ss_pred hHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHH
Q 001357 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKA 571 (1093)
Q Consensus 498 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~ 571 (1093)
...+........+|.+|...|+.+.|..-|+.+...... ...++...+.++..
T Consensus 240 ---------------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 240 ---------------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred ---------------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 033456677888999999999999999999998864332 13344444444333
Q ss_pred cCCH-----HHHHHHHHHHHHHcCCC------hhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 572 RNNL-----QLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 572 ~g~~-----~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
..-. -.|+++-.+++++...- ...+..++.+|...|.-++-...+.+
T Consensus 299 ~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 299 LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 2222 23666666666554221 22556677777666665554444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=91.99 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~ 202 (1093)
+.+++.+|..++..|++++|+..|..++..+|++ +.+++.+|.+++..|+++.|+.+|+.++..+|+.+ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 57889999999999999999999999999988852 567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
+|.++..+|+++.|+..|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=90.58 Aligned_cols=132 Identities=27% Similarity=0.232 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+|..+++-.|.+|-.+|-.. -|.--|.+++.+.|.-+.++..+|..+...|+|+.|...|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56777777788887777766 7888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH-HHHHh
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF-QRALQ 225 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~ 225 (1093)
+..+....|..++--|+|.-|...+.+..+.+|+++-. ...-.+-...-++.+|...+ +++..
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR--~LWLYl~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR--SLWLYLNEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH--HHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988422 11112222334556665544 34433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-08 Score=109.09 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
+...|..++..|+|.+|+.+|.+++..+|.+ ..+++.+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
|+ +.+|+..|++++.++|.++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.00026 Score=79.36 Aligned_cols=229 Identities=19% Similarity=0.192 Sum_probs=116.4
Q ss_pred HHHHHHcCChHHHHHHHHH------HHHh----CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 169 ACVEFNRGRYSDSLEFYKR------ALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~------al~~----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|.++-+..++++|+.+|++ ++++ .|.....+--..|.-+...|+++.|+..|-.+--+ ..-.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kai 739 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAI 739 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHH
Confidence 3344444555566655543 2222 23332233334566667777777777776553211 1111
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1093)
........ +.+|+..+...-... .....+-.++..|...|+|+-|..+|..+- .+..-...|.+.
T Consensus 740 eaai~ake---w~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 740 EAAIGAKE---WKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKA 804 (1636)
T ss_pred HHHhhhhh---hhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhcc
Confidence 11222222 666666655443222 122334456777777777777777776542 233344566677
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1093)
|++.+|.++-.+.. .+......|...+.-+-..|+|.+|..+|-.+- .|+. ....|-+.|..+..+.+
T Consensus 805 ~kw~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~--~p~~------aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--EPDK------AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred ccHHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--CchH------HHHHHHhhCcchHHHHH
Confidence 77777777666554 334444556666666667777777666553221 1211 12234444555444444
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001357 399 LRKAAKIDPRD-AQAFIDLGELL-ISSDTGAALDAFKTA 435 (1093)
Q Consensus 399 l~~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (1093)
..+. .|+. ...+..++.-+ ..|+...|...|-++
T Consensus 873 v~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 873 VEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3332 2322 34455556656 666666666555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00021 Score=78.15 Aligned_cols=430 Identities=13% Similarity=0.138 Sum_probs=246.8
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 001357 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 300 (1093)
++-++.+|.+..+|..|..-+... . +++....|++.+...|..+.+|...+...+...+|+.++.+|.+.+...
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~---~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P---IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C---HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--
Confidence 677889999999999998877666 4 8999999999999999999999999999999999999999999988542
Q ss_pred CCCchHHHHHH-HHHHHhcCCHHHHH----HHHHHHHHhcCCCCCchhhHHHHHHHHHH---cCCHHHHHHHHHHHHHhC
Q 001357 301 GPTKSHSYYNL-ARSYHSKGDYEKAG----LYYMASVKEINKPHEFIFPYYGLGQVQLK---LGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 301 ~~~~~~~~~~l-a~~~~~~g~~~~A~----~~~~~al~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~ 372 (1093)
...+.|... -.+-...|....+. ..|+-++..+.-++.....|...+..+.. .|.|+
T Consensus 84 --LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e------------- 148 (656)
T KOG1914|consen 84 --LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE------------- 148 (656)
T ss_pred --hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH-------------
Confidence 112333222 12222233333322 23333333333223333333333322211 11111
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHH-----------HHHHH--HH-hcCCHHHHHHHHHHHHH
Q 001357 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAF-----------IDLGE--LL-ISSDTGAALDAFKTART 437 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~-~~~-----------~~la~--~~-~~~~~~~A~~~~~~a~~ 437 (1093)
...+.+.....|++++..--.+. ..| ..+|. +- ....|..|...++....
T Consensus 149 ---------------e~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~ 213 (656)
T KOG1914|consen 149 ---------------ENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQN 213 (656)
T ss_pred ---------------HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 11133334444444443211110 000 00111 11 22234444444444443
Q ss_pred HHHhcCCCCC-------------HHHHHHHHHHHHHcCCH-------H-HHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 438 LLKKAGEEVP-------------IEVLNNIGVIHFEKGEF-------E-SAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 438 ~~~~~~~~~~-------------~~~~~~la~~~~~~g~~-------~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
+........+ .+.|.++...-...+-- . .-.-.|++++.
T Consensus 214 lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll-------------------- 273 (656)
T KOG1914|consen 214 LTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLL-------------------- 273 (656)
T ss_pred HHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHH--------------------
Confidence 3322110000 11121111111000000 0 00001111111
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHhc-CChHHH
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD--------------TVAASVLYRLILFKY-QDYVDA 561 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~~-p~~~~~ 561 (1093)
.-+..+.+|+..+..+...++ ..++..+|+.++..- ..+...
T Consensus 274 -----------------------~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 274 -----------------------YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred -----------------------HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234455544444443333 667777888777532 223444
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHcCCChh-HHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHHhHh
Q 001357 562 YLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGN 636 (1093)
Q Consensus 562 ~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~ 636 (1093)
++.++..-...- ..+.....+++++.+...++. +|..+...-.+..-...|..+|.++-+..-. ++.+...++..
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 444444322222 366677788888877655544 5666777777777789999999998875433 35665555443
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhH
Q 001357 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (1093)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (1093)
|+.. ++..-|..+|+--+...++.+...+.....+...|+-..|..+|++++...- + ......+
T Consensus 411 --y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l-~-~~ks~~I 474 (656)
T KOG1914|consen 411 --YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL-S-ADKSKEI 474 (656)
T ss_pred --HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC-C-hhhhHHH
Confidence 4445 8899999999999999999999999999999999999999999999998721 0 0134577
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 717 WINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 717 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
|..+-..-..-|+...++++=++....|+
T Consensus 475 w~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 475 WDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 77777777778999888888777777765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-06 Score=104.43 Aligned_cols=230 Identities=16% Similarity=0.208 Sum_probs=187.6
Q ss_pred EEeCCCCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 001357 16 RVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY 95 (1093)
Q Consensus 16 ~~~~~~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~ 95 (1093)
.+|++.-|.+++|+..++...|...-.|+.-..-....+.++.|+++.++|+.. ++ | ....++.-+|..+-++-..
T Consensus 1434 ~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN--~-REeeEKLNiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1434 ERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-IN--F-REEEEKLNIWIAYLNLENA 1509 (1710)
T ss_pred hcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CC--c-chhHHHHHHHHHHHhHHHh
Confidence 366778899999999999999999999999999999999999999999999865 21 1 2233455555544444444
Q ss_pred hchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001357 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1093)
Q Consensus 96 ~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1093)
.|--+ .-.+.|++|-+.. +-..++..+..+|...+.+++|.++|+.+++...+....|..+|..++++
T Consensus 1510 yG~ee-----------sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1510 YGTEE-----------SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred hCcHH-----------HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 44222 4456666665543 22456778889999999999999999999999888899999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
.+-+.|..++.+++..-|.. ...+....|.+-++.|+.+.++.+|+-.+..+|...+.|..+...-...++ .....
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHH
Confidence 99999999999999999883 144556678899999999999999999999999999999999999998888 88888
Q ss_pred HHHHHHHHhC
Q 001357 255 EKMQRAFEIY 264 (1093)
Q Consensus 255 ~~~~~al~~~ 264 (1093)
.+|++++.+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 9999998764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=97.04 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~ 186 (1093)
.+..+.-++.-+..||+|+..|..+|.+|+..|++..|...|.+++++.|+|+..+.++|.+++.+. .-.++..+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566677777788888888888888888888888888888888888888888888888888777654 3557788888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
+++..+|.+ ..+++.+|..++..|++.+|...|+.++...|.+..
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 888888888 666777888888888888888888888887776543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-06 Score=101.84 Aligned_cols=234 Identities=16% Similarity=0.186 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCc----HHHHHHHHHHHHHhhhHHhHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN----VEALVALAVMDLQANEAAGIRK 252 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~----~~a~~~la~~~~~~~~~~~~~~ 252 (1093)
-.+...-|.+.+..+|+. ...|+.+-..+..+++.+.|+..++++|. +++.. ...|..+-++....|. -+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHH
Confidence 344567788889999998 77788888888999999999999999987 44543 3345555555555554 456
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
..+.|++|.+.. +...++..|..+|...+.+++|.++++.+++... .....|..++..++.+++-+.|..++.+++
T Consensus 1516 l~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 667888887764 3346788899999999999999999999997764 445899999999999999999999999999
Q ss_pred HhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Q 001357 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDA 410 (1093)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--p~~~ 410 (1093)
..+|. ..+.......|++-++.|+.+.+..+|+..+..+|.-.++|..+...-.+.|....+..+|++++.+. |...
T Consensus 1592 ~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 87655 45667777889999999999999999999999999999999999999999999999999999998765 5555
Q ss_pred HHHHHHHHHH
Q 001357 411 QAFIDLGELL 420 (1093)
Q Consensus 411 ~~~~~la~~~ 420 (1093)
..++....-|
T Consensus 1671 KfffKkwLey 1680 (1710)
T KOG1070|consen 1671 KFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555555555
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.8e-06 Score=85.81 Aligned_cols=243 Identities=24% Similarity=0.249 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKP--HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CE 377 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~ 377 (1093)
+++.++++.+...-++.+++.+-...+..-... ..-..+...++.++..++.++++++.|+.+++...++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 566667777777777777766665555321111 1122445567777777777777777777777653221 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDP----RD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE- 445 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~p----~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~- 445 (1093)
++..+|.++.+..++++|+-+..++..+.. ++ ..+++.++..+ ..|....|.++.+.+.++.-..++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777788888888888777777766531 12 23455566666 7788888888888887776554432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchH
Q 001357 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1093)
Q Consensus 446 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 525 (1093)
.....+..+|.+|...|+.+.|..-|+.+........ ..-...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g-------------------------------------drmgqv 286 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG-------------------------------------DRMGQV 286 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh-------------------------------------hhHHHH
Confidence 2256677788999999999999998888876311000 011133
Q ss_pred HHHHHHHHHHHhcCChH-----HHHHHHHHHHHhcCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 526 TVLFNLARLLEQIHDTV-----AASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~-----~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
.++...|.++....-.. .|+++-.++++.... ....+.+++.+|...|.-++-...+..+
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34444455544333333 366666666654322 2457788889998888777665555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=89.00 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=99.1
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001357 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
+..+.+..-...+..|.-++..|++++|..+|+-+.-.+|.++..|+++|.++..+++|++|+..|..+..+.+++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4445556667889999999999999999999999999999999999999999999999999999999999999988 677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.+..|.|++.+|+...|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 89999999999999999999999998 4543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=88.06 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+|+.|...|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 34677889999999999999999999999999999999999999999999999999999999999999 78899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
+--|++.-|..-|.+-.+.+|+++--
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHH
Confidence 99999999999999999999998754
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-07 Score=92.13 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
|....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.+ ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4556678999999999999999999999999877653 5689999999999999999999999999999998 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
.+|.++...|+...+...+..++.. +.+|+..+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666655431 677888888888888876
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00061 Score=73.56 Aligned_cols=222 Identities=13% Similarity=0.060 Sum_probs=142.2
Q ss_pred hcCChHHHHHHHHHHHHhc------CChHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHc---CC-------C
Q 001357 537 QIHDTVAASVLYRLILFKY------QDYVD--------AYLRLAAIAKARNNLQLSIELVNEALKVN---GK-------Y 592 (1093)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~------p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~ 592 (1093)
..|-+++|.++-.+++... |.... .+-.++.+-.-.|++.+|+.-+..+.... |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4566777777777776532 11111 22333445556799999998887776654 43 2
Q ss_pred hhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH--HhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhh
Q 001357 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1093)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~--~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 670 (1093)
+.++..+|......+.++.|...|..+.+.....+..+++ +++.. |... ++.+ .+|+-.-.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~e---d~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDAE---DLYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccHH---HHHHHHHhc
Confidence 3366777877788889999999999999987776665443 45666 7665 3332 233322233
Q ss_pred CCCC----------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHH
Q 001357 671 HTSN----------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQN 739 (1093)
Q Consensus 671 ~p~~----------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 739 (1093)
.|.| ..+++..|.....++++.+|...+.+.++.....+. .-....+..||++....|+..++..+..-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 4442 123455566677899999999999999887521111 11344566789999999999999999998
Q ss_pred HHHhhcCCCCH--HHHH--HHHHHHHhhcc--HHHHHHHHH
Q 001357 740 CLRKFYYNTDA--QILL--YLARTHYEAEQ--WQDCKKSLL 774 (1093)
Q Consensus 740 al~~~~~~~~~--~~l~--~la~~~~~~g~--~~~A~~~~~ 774 (1093)
++......+|. ..|. .+-..|...|. .....+.|.
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 88876666772 2222 34445555666 444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=85.99 Aligned_cols=108 Identities=29% Similarity=0.358 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1093)
..++.+|..+...|++++|+..|..++...+..+....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5677778888888888888888888877544444445677778888888888888888888888877764 5678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 413 (1093)
|.++...|++++|+.++.+++...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-07 Score=92.73 Aligned_cols=119 Identities=22% Similarity=0.161 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1093)
+.-+.-++..+..+|++ ..-|..+|.+|+.+|++..|...|.+++++.|+|++.+..+|.+++...+.....++...|.
T Consensus 139 ~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34444455556666666 44566666666666666666666666666666666666666666655554444556666666
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 001357 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1093)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (1093)
+++..+|.+..+++.||..++..|+|.+|...++.++...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-08 Score=80.30 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1093)
++.+|+.+|.+++..|++++|+..|.+++..+|+++.+++.+|.++..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666665
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-07 Score=97.15 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001357 132 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 196 (1093)
Q Consensus 132 ~~~a~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~ 196 (1093)
+.+|...+..+. ...|+.+|.+++ ..+|....++-.+|.|++.. ....+|+....+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 667777766664 577888999999 88888899998888888764 23457788888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
+.++..+|.+++..++++.|...|++++.++|+.+.+|+..|.+....|+ .++|+..++++++++|....
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhH
Confidence 77788888888888888888888888888888888888888888888888 88888888888888886543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=83.26 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
+++.+|.+++..|++++|+..|..++...|.+..++..+|.++...|++++|+.+|.+++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 466778888888888888888888888888777778888888888888888888888888877777 4567777888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001357 210 LGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1093)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888877777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=95.59 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001357 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1093)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1093)
....|+.+|.+++ .++|....++-.++.+++.. ....+|..+.++++..+|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999999988765 24678899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH--HHHHhhhHHhHHHHH
Q 001357 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254 (1093)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~--~~~~~~~~~~~~~Al 254 (1093)
+++.|...|++++.++|+. +.+++..|..+...|+.++|+..++++++++|....+-...-. .|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 8889999999999999999999999999999986655433322 344433 67777
Q ss_pred HHHHHHHH
Q 001357 255 EKMQRAFE 262 (1093)
Q Consensus 255 ~~~~~al~ 262 (1093)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-06 Score=81.40 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHHHHHhcCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhh
Q 001357 527 VLFNLARLLEQIHDTVAASVL-YRLILFKYQD-YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1093)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 604 (1093)
+...++..+..-++.+.-+.- ++.+...... +......-+.+++..|++++|...... ..+.++...-..+++
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHH
Confidence 333444444444554444433 3333333333 234455556778888899999887765 345566677777888
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001357 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684 (1093)
Q Consensus 605 ~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~ 684 (1093)
++.+++-|...++++.+.. +-.++..|+.. |...+... +.+..|.-+|+.+-...|..+...++.+.+
T Consensus 149 k~~r~d~A~~~lk~mq~id---ed~tLtQLA~a-wv~la~gg--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQID---EDATLTQLAQA-WVKLATGG--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHccc---hHHHHHHHHHH-HHHHhccc--------hhhhhHHHHHHHHhcccCCChHHHccHHHH
Confidence 8889999999998888775 33555667777 77664443 568888888888888788888888888888
Q ss_pred HHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 685 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
++.+|++++|..+++.++...+ .+|+++.|+..+-...|...++..-+-.-++.
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888888888888888887 67888888888888888877776665555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.68 E-value=1e-06 Score=84.60 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001357 112 LATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
.+...++.+...+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.+++..|+|++|+..+
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444555555555555 3444555666666666666666666666554433 234555566666666666666665
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+.+ . .+...+.++..+|.++...|++++|+..|+++
T Consensus 109 ~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 109 QQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred Hhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 442 1 11122344555666666666666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.9e-07 Score=94.21 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=93.1
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001357 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1093)
Q Consensus 128 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1093)
...++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|.+++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46777788776 56799999999999999999987 5799999999999999999999999999988876 367788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
.+|.++..+|+++.|+..|+++++..|++..+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8999999999999999999999999998775533
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.1e-07 Score=88.87 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444443 4566777777777788888888888877765542 3467777777777777777777777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
+++...|.. ...+..+|.++..+|
T Consensus 97 ~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 97 QALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 777777776 455666677666444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=96.77 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HH
Q 001357 674 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 751 (1093)
Q Consensus 674 ~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 751 (1093)
+...++..+..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++..|+..|+.++..||.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345566666655 5679999999999999999996643 4689999999999999999999999999999987665 89
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
+++.+|.++...|+++.|+.+|++++..+|+...
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998753
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=94.22 Aligned_cols=107 Identities=16% Similarity=0.267 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 756 (1093)
.+..+.-+...|+|..|...|...++.+|++.+ .+.++|.||.+++.+|+|..|...|..+++.||.++- |+.++-|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 667777888899999999999999999998865 5789999999999999999999999999999988776 8999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCcch
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 786 (1093)
|.+....|+.++|..+|+++++.+|+.+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999999988654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-07 Score=85.27 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=97.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCH
Q 001357 139 LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~ 213 (1093)
+..+++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ...+++.++.+++..|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36888999999999999999988 5678889999999999999999999999987655 345688899999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
++|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999998663 3344456677788888888888 888888887763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=101.02 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=116.0
Q ss_pred CCCChhhH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHH
Q 001357 124 DMHEPSTW--VGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRALQ 190 (1093)
Q Consensus 124 ~p~~~~~~--~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~al~ 190 (1093)
-|.++.+| +.+|..++..+. +..|+.+|+++++.+|++..++..++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35555554 667888877765 889999999999999999999999888776542 23455555666555
Q ss_pred h--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 191 ~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
. .|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ +++|+..|.+++.++|..+
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788889999999999999999999999999 58899999999999999 9999999999999999988
Q ss_pred H
Q 001357 269 M 269 (1093)
Q Consensus 269 ~ 269 (1093)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=9e-08 Score=78.62 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 228 (1093)
++.+|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777776 566777777777777 57777777777777666
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-08 Score=83.34 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001357 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (1093)
+|+|+.|+.+|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777776664 344566667777777777777777766 5555554 4455556777777777777777
Q ss_pred HHHHH
Q 001357 219 AFQRA 223 (1093)
Q Consensus 219 ~~~~a 223 (1093)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 66653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.1e-06 Score=82.42 Aligned_cols=199 Identities=20% Similarity=0.207 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1093)
.+..|+..|...++.|+|.+|...|+.+....|.+ ..+.+.++.++++.++|+.|+...++.+.+.|.++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988865 56889999999999999999999999999999873 34445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
..|.+++..= + ....+......|+..|+..+...|++.-+-.....+
T Consensus 113 lkgLs~~~~i---------------~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---- 159 (254)
T COG4105 113 LKGLSYFFQI---------------D--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---- 159 (254)
T ss_pred HHHHHHhccC---------------C--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----
Confidence 5555522110 0 001122236677777777777777765332221111
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
..+...+ +.--+.+|+.|.+.|.+-.|+..++.+++..+..+....++..+..+|..+|-.++|
T Consensus 160 -------~~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 160 -------VKLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred -------HHHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 1111111 122344566666666666666666666665555555555666666666666666666
Q ss_pred HHHHHHHHHhCCC
Q 001357 362 LTNFEKVLEIYPD 374 (1093)
Q Consensus 362 ~~~~~~~l~~~p~ 374 (1093)
-..-.-+....|+
T Consensus 224 ~~~~~vl~~N~p~ 236 (254)
T COG4105 224 KKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHhcCCC
Confidence 5554433333343
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.2e-07 Score=97.27 Aligned_cols=140 Identities=21% Similarity=0.205 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hhh-----hHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~-~~~-----~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1093)
...-..|+.||+.|+|..|...+++++..-.... ++. ...-++.++.+|+.+|++++... .|+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai 277 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAI 277 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHH
Confidence 3456778999999999999999999764311100 000 11123444444555555444433 555
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHh
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQV 191 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-l~~~~~al~~ 191 (1093)
..+++++..+|+|+-++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+... .+.|.+++..
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555555555555555555555555555555555555555555555555555444444333332 4444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-05 Score=77.06 Aligned_cols=250 Identities=14% Similarity=0.047 Sum_probs=145.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001357 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393 (1093)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 393 (1093)
-++..|+|..++..-.+.-. .+........+...|+..|.+...+......- .....+...++.....-++.+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence 34445555555554444331 12333444555566666666554443332221 112334444444444444444
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 394 KAQELLRKAAKI-DPRDAQAFIDL-GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 394 ~A~~~l~~~l~~-~p~~~~~~~~l-a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
.-+.-+.+.+.. .-....++..+ +.++ ..+++++|+........ .++...-..++.+..+++-|...
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----------LEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333322 22222233333 3344 77777777776654222 23333345566777778888888
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh----cCChHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASV 546 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 546 (1093)
++++... ++-.++..||..+.. .+.+..|.-
T Consensus 160 lk~mq~i---------------------------------------------ded~tLtQLA~awv~la~ggek~qdAfy 194 (299)
T KOG3081|consen 160 LKKMQQI---------------------------------------------DEDATLTQLAQAWVKLATGGEKIQDAFY 194 (299)
T ss_pred HHHHHcc---------------------------------------------chHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 8777663 123344444444432 345778888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHH-HHhhhcCCC
Q 001357 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDG 625 (1093)
Q Consensus 547 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~l~~~~~ 625 (1093)
+|+..-...|..+...+..+.++..+|++++|..+++.++..++++++++.++..+-...|...++..-+ .+....+|.
T Consensus 195 ifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 195 IFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 8888887777778888888888888888888888888888888888888888888888888766555444 444444555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.1e-07 Score=88.27 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=77.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1093)
+..+.+++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+.++.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34456677788888888888888888888876433333345677888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH--------------HHHHHHHHHHHHhCCCC
Q 001357 382 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 409 (1093)
Q Consensus 382 la~~~~~~g~~--------------~~A~~~l~~~l~~~p~~ 409 (1093)
+|.++...|+. .+|+.++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888877763 44555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.9e-07 Score=95.63 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=131.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHH
Q 001357 384 HIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGV 456 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~~------p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~ 456 (1093)
.+|...+++++|...|.++.... ......+...+.++...++..|+.+|.+++.++...+.... ..++..+|.
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444455555555555554321 01133445556667555888888888888888776654332 578889999
Q ss_pred HHHHc-CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 457 IHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 457 ~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
+|... |+++.|+.+|++|+....... .......++..+|.++
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-------------------------------------~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-------------------------------------SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------------------------ChhhHHHHHHHHHHHH
Confidence 99998 999999999999998531000 0112456778899999
Q ss_pred HhcCChHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-----HHHHhhhhh
Q 001357 536 EQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-----ALSMLGDLE 603 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~ 603 (1093)
...|++++|+.+|+++....-+ ....++..+.+++..|++..|...+++....+|.... +...+..++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999875422 1235567778889999999999999999999886543 333344443
Q ss_pred hc--ccchHHHHHHHHHhhhc
Q 001357 604 LK--NDDWVKAKETFRAASDA 622 (1093)
Q Consensus 604 ~~--~g~~~~A~~~~~~~l~~ 622 (1093)
-. ...+..|+..|..+..+
T Consensus 246 ~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS--
T ss_pred HhCCHHHHHHHHHHHcccCcc
Confidence 22 23477777777765544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0041 Score=75.18 Aligned_cols=472 Identities=15% Similarity=0.104 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHhCCC----cHHHHHHHHHHHH-HcCChHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHHhcCCH
Q 001357 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (1093)
Q Consensus 250 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (1093)
+..|+.+++-+++..+- ...+...+|.+++ .+.+++.|..++.+++....... ....+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 45566666666642221 3355666777766 77888888888888876554411 1234556678888888877
Q ss_pred HHHHHHHHHHHHhcCCCCCchh-hHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 001357 322 EKAGLYYMASVKEINKPHEFIF-PYYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1093)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1093)
. |+..+++.+......+.... ..+.+ ...+...+++..|+..++.+.... +.++. +....+.++...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 88888888875543222221 12222 233333478999999998887764 33433 233345666667777
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------------
Q 001357 393 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 446 (1093)
Q Consensus 393 ~~A~~~l~~~l~~~----------p~~~~~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 446 (1093)
+.+++.+.++.... +....++..+-.+. ..|++..+...++..-..+.......
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 88888887774321 12244555544433 66777676666555544443321110
Q ss_pred ------------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001357 447 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1093)
Q Consensus 447 ------------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1093)
. .-++..-|......|..+.|.+++.+++..-.....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~------------------- 336 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI------------------- 336 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc-------------------
Confidence 0 111222244455556666777777777653110000
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1093)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 582 (1093)
. .....+...... ..-..++..+ ...+.+..+.+.+-.+++..|...+
T Consensus 337 ----------~---~~~~~~~sl~~~-------------~~~~~~~~~l------~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 337 ----------K---SPSAPSESLSEA-------------SERIQWLRYL------QCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred ----------c---CCCCCCcCHHHH-------------HHhHHHHHHH------HHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 0 000000000000 0000011100 0233445556666677777777777
Q ss_pred HHHHHHc---CC------ChhHHHHhhhhhhcccchHHHHHHHH--------HhhhcCCCCChHHHHHhHhHHHHHHHhh
Q 001357 583 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 645 (1093)
Q Consensus 583 ~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~l~~~~~~d~~~~~~l~~~~y~~~~~~ 645 (1093)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+. ..|. +.-. ..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila-~LNl-~~I~-~~ 461 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA-ALNL-AIIL-QY 461 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH-HHHH-HHHh-Hh
Confidence 7666543 22 35577888888888888999998887 444444444444332 2222 2211 11
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhhCCC-CHHHHH-HHHHHHH--hcCCchhHHHHHHHHHHHh-cCCCCCC-chhHHHH
Q 001357 646 EKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAAN-GAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MPDVWIN 719 (1093)
Q Consensus 646 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~-~la~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~~~~~~ 719 (1093)
+..... ...+....++..+......|+ +...++ .+..++. ..-...++...+...++.. ....... ..-++.-
T Consensus 462 ~~~~~~-~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 462 ESSRDD-SESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred hcccch-hhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 110000 000133333333333333333 222222 2222222 2223457777777777665 2111111 2334555
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHH-----HHHHHHHhhccHHHHHHHHHHHHH
Q 001357 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 720 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~-----~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
+++.++ .|+..+.......+.......++ ..+|. .+...+...|+.++|.....++..
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777 68888888887777765444433 33442 345567778999999888776644
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=76.50 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.+|..++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777777777777777777777777777777777765
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-06 Score=88.77 Aligned_cols=137 Identities=21% Similarity=0.223 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCChHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV-LEADRD--------NVPALLGQACVEFNRGRYSD 180 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~la~~~~~~g~~~~ 180 (1093)
+..+......+..+..+.+.+++..+..++..|++..|.+.+... +...|. ...+|..+|.++++.|.|.-
T Consensus 222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~ 301 (696)
T KOG2471|consen 222 LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQA 301 (696)
T ss_pred HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHH
Confidence 335555556666666678889999999999999999999998764 222222 34567899999999999999
Q ss_pred HHHHHHHHHHh---------CCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 181 SLEFYKRALQV---------HPS--------CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 181 Al~~~~~al~~---------~p~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
+..+|.++++. .|. -.-.+.|+.|..|...|++-.|.++|.+++.....++..|..++.+.+.
T Consensus 302 ~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 302 SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999961 111 1245788999999999999999999999999999999999999998877
Q ss_pred hhh
Q 001357 244 ANE 246 (1093)
Q Consensus 244 ~~~ 246 (1093)
...
T Consensus 382 a~~ 384 (696)
T KOG2471|consen 382 ALQ 384 (696)
T ss_pred Hhh
Confidence 654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7e-07 Score=94.77 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCC------------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKP------------HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 378 (1093)
.|..|++.|+|..|...|.+++..+... .....++++++.++.+++.|..|+..++++|..+|+|+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 4555555555555555555555433211 1123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHH
Q 001357 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS-DTGAALDAFKTARTLL 439 (1093)
Q Consensus 379 ~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~-~~~~A~~~~~~a~~~~ 439 (1093)
++..|.++...|+++.|+..|++++++.|+|-.+...|..+. ... ......+.|..+....
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998888887 333 3334455666555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.6e-08 Score=82.54 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
++|+.|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ ...+|.++...+.+|.+++.+|+|++|+.+|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678999999999999995 466788899999999999999999999 7788888899999999999999999999999
Q ss_pred HHH
Q 001357 186 KRA 188 (1093)
Q Consensus 186 ~~a 188 (1093)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-07 Score=78.60 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|+++.|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46677888888888888888888888888877 56677888888888888888888888888888887788888888888
Q ss_pred hhhHHhHHHHHHHHHHHHHhCC
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p 265 (1093)
.|+ +..|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 777 7888888887777665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00027 Score=74.57 Aligned_cols=203 Identities=30% Similarity=0.380 Sum_probs=111.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH-
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN- 276 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~- 276 (1093)
....+..+...+.+..+...+...+. ..+.....+..++.++...+. +..++..+..++...+...........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK---YEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh---HHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 33444444444444444444444443 334444444444444444443 444444444444444333222222333
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHc
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKL 355 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~ 355 (1093)
++...|++..+...+.+++...+........+...+..+...+++..|+..+..++. ..+. ....+..++..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHc
Confidence 444445555555554444331100012334444445556666777777777777776 2333 455677777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
+.+..|+..+..++...|.....+..++..+...+.+..+...+.+++...|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777777777777765666666666666666677777777777777765
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0002 Score=75.67 Aligned_cols=224 Identities=27% Similarity=0.374 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
..+..+...+..+....+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555666666666666655 256666777777777777777777777765 566667777777777777777777777
Q ss_pred HHHHHHHhCCCChHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 184 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
.+..++...+.. .......+. ++...|+++.|...|.+++..+| .....+..++..+...++ +..++..+.+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHH
Confidence 777777766655 233344444 67777777777777777766555 233444444444444444 6666666666
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 001357 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1093)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1093)
++...+.. ....+..++..+...+.+..|+..+..++.. .+
T Consensus 193 ~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~ 233 (291)
T COG0457 193 ALKLNPDD------------------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALEL---DP 233 (291)
T ss_pred HHhhCccc------------------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh---Cc
Confidence 66666552 2244555555555555666666666666552 22
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1093)
.....+..++..+...+.+..+...+..++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 23344555555555555667777777777666665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=100.53 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1093)
.+.+..|+.+|++++.++|+++.++..++.++.... +...+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 456779999999999999999999999888876642 345666666666664 7778899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
++++|...|++++.++|+ ...|..+|.++...|++++|+..|.+++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999994 5689999999999999999999999999999998753
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=85.41 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=85.0
Q ss_pred HHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC--
Q 001357 50 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE-- 127 (1093)
Q Consensus 50 y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~-- 127 (1093)
||-...+..+...+...+.... ......++..+|.++...|... +|+..|.+++.+.|+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTS-------GEKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccchhhhhHhccCCc-------hhHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchh
Confidence 3444455666666655543211 2245677888888888888766 9999999999887653
Q ss_pred -hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001357 128 -PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1093)
Q Consensus 128 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1093)
+.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999988333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.9e-08 Score=99.88 Aligned_cols=244 Identities=13% Similarity=0.053 Sum_probs=154.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
+-..|..|+.+|.|++|+.||.+.+..+|.|+..+...|.+|++...|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 34568888888888888888888888888888888888888888888888888888888877666 56677788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1093)
|...+|...++.+|.+.|++.+....++.+..-... .-+.+.-|....+. +-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~-----------~I~~KsT~G~~~A~-----------------Q~ 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRER-----------KIATKSTPGFTPAR-----------------QG 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh-----------hHHhhcCCCCCccc-----------------cc
Confidence 888888888888888888766654444433211100 00111111111110 00
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
..+++ ..-.-|..+...|.++.++..|...+...+ ........ +..+.+.-+++.++.-+-+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~---~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATID---DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeeccccccC---ccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000 111235556667777777777766554221 11111222 5667777788888888877777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
.+|.........+.+-.-.|...++...++.++.+.|.+-.....+..
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr 343 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETR 343 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhh
Confidence 666555555555555555667778888888888888776554444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-05 Score=77.44 Aligned_cols=199 Identities=16% Similarity=0.186 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhH---HH
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---LS 597 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~ 597 (1093)
.+..+++-|......|++.+|...|+.+...+|.. ..+.+.++..+.+.++++.|+..+++.+.+.|.++.+ ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46678888888888888888888888888888764 5577778888888888888888888888888877663 33
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 001357 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1093)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 677 (1093)
..|.+ .|..+ .. +..| ......|+..|+.++...|++.++
T Consensus 113 lkgLs------------~~~~i-~~-~~rD--------------------------q~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 113 LKGLS------------YFFQI-DD-VTRD--------------------------QSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHH------------HhccC-Cc-cccC--------------------------HHHHHHHHHHHHHHHHHCCCCcch
Confidence 33333 11100 00 0001 155667888899999999998776
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 756 (1093)
-.....+ ..+... ...--..+|..|.+.|.+..|+.-++.+++.++..+. ...+..+
T Consensus 153 ~dA~~~i--------------~~~~d~--------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l 210 (254)
T COG4105 153 PDAKARI--------------VKLNDA--------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL 210 (254)
T ss_pred hhHHHHH--------------HHHHHH--------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHH
Confidence 5433222 222111 1223347788999999999999999999999876665 7889999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~ 784 (1093)
..+|+..|-.++|.++-.-+-...|+++
T Consensus 211 ~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 211 EEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999999999999887766655666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-06 Score=86.36 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1093)
.+..|.-++..|+|..|...|...++..+.++..+.++||||.+++.+|+|+.|...|..+++..+..|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45556666666777777777777777666666777778888888888888888888888877777777777777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1093)
++..+|+.++|...|+++++.+|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888777776655443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-06 Score=92.79 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 001357 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 468 (1093)
++++|...|.++ |.+| ..+++++|...|.++.......+.... ...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566776666664 5677 788999999999999888776443322 35566666666555 999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhc-CChHHHHHH
Q 001357 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (1093)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (1093)
.+|++++....... ....-..++..+|.+|... |+++.|+.+
T Consensus 95 ~~~~~A~~~y~~~G-------------------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~ 137 (282)
T PF14938_consen 95 ECYEKAIEIYREAG-------------------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEY 137 (282)
T ss_dssp HHHHHHHHHHHHCT--------------------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHH
T ss_pred HHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999987531100 1123467888999999999 999999999
Q ss_pred HHHHHHhcCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-------hHHHHhhhhhhcccchHHHHH
Q 001357 548 YRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 548 ~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
|++++..... ...++..++.++...|+|.+|+..|+++....-.++ ..++..+.+++..|++..|..
T Consensus 138 Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 138 YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999985421 256788999999999999999999999887542221 245667889999999999999
Q ss_pred HHHHhhhcCCC
Q 001357 615 TFRAASDATDG 625 (1093)
Q Consensus 615 ~~~~~l~~~~~ 625 (1093)
.|++.....|.
T Consensus 218 ~~~~~~~~~~~ 228 (282)
T PF14938_consen 218 ALERYCSQDPS 228 (282)
T ss_dssp HHHHHGTTSTT
T ss_pred HHHHHHhhCCC
Confidence 99999887654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=73.23 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~ 410 (1093)
+.+|..++..|++++|+.+|+.++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35678888888888888888888888888888888888888888888888888888888888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00058 Score=71.72 Aligned_cols=293 Identities=17% Similarity=0.116 Sum_probs=186.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1093)
|.+..-.|+-..|.+.-.+.-.+ ..+..+-+++.-++.-.-.|+++.|.+-|+.++. +|..- +..|-.+|+.....
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr~ 167 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHhc
Confidence 34444556666666665555433 2223345555556666666777777777666653 33211 22233333333333
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHHh-cCCHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHS-KGDYEK 323 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~-~g~~~~ 323 (1093)
|..+.|+.+-..+...-|.-+.++.......+..|+++.|+++.+......-..+.. ..+-..-+.+... .-+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 336677777777777777777777766777777777777777776655432222221 1122222222111 234667
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH---
Q 001357 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR--- 400 (1093)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~--- 400 (1093)
|...-..+++ ..|+++.+-..-+..++..|+..++-.+++.+.+..|. +.++. ..++.+.|+ .++.-++
T Consensus 248 Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCC--cHHHHHHHHH
Confidence 7777777776 67888888888999999999999999999999998874 44332 223444554 3444444
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDG 478 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 478 (1093)
++..+.|++....+..+..- ..|++..|...-+.+....|. ..++..++.+--.. |+-.++..++-+++...
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 44456799999999998877 889999988887777776554 46677778776555 99999999999999854
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.3e-06 Score=76.60 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1093)
.+..++..|...+..|+|.+|+..|+.+....|.. ..+.+.++.+++..++|.+|+..+++.++++|.+ ...+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35678889999999999999999999999888764 5788999999999999999999999999999987 356778
Q ss_pred HHHHHHHHcCC
Q 001357 202 GIGLCRYKLGQ 212 (1093)
Q Consensus 202 ~la~~~~~~g~ 212 (1093)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888877654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.6e-06 Score=92.04 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=92.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHH
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 214 (1093)
...+...++++.|+.+|+++.+.+|. +...+|.++...++..+|+.++.+++..+|.+ ..++...+..+...++++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHH
Confidence 34445557788888888887777654 45567777777778888888888888878877 666777788888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
.|+.+.++++.+.|.+...|..|+.+|...|+ ++.|+..+..+--.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCcCC
Confidence 88888888888888888888888888888887 88888777755433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-06 Score=80.39 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=93.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
+.++.....+..|.-++..|++++|..+|+-+...+|.+ ...++++|.|+..++++++|+..|..+..++++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 344456778899999999999999999999999999998 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
.|.+++..|+ ...|+..|..++. .|.+.
T Consensus 111 agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 9999999998 8899999988887 45443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00077 Score=70.85 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=63.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH---HHHHHhCCCcHHHH
Q 001357 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF---EKVLEIYPDNCETL 379 (1093)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---~~~l~~~p~~~~~~ 379 (1093)
...-+-..-+..++..|+..++-.+++.+.+..+ +|+ +.+.+++.+.|+. ++.-+ .++..+.|++.+..
T Consensus 261 dlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~-----ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~ 332 (531)
T COG3898 261 DLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPD-----IALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESS 332 (531)
T ss_pred ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChH-----HHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHH
Confidence 3334444455555555555555555555554211 111 1111222233332 22222 22333456666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 001357 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTART 437 (1093)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~ 437 (1093)
..++...+..|++..|..--+.+....|. ..++..|+.+- ..|+-.+...++-+++.
T Consensus 333 ~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 333 LAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 66666666666666666666666666554 33455555555 44666666666666554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.011 Score=69.63 Aligned_cols=578 Identities=12% Similarity=0.057 Sum_probs=294.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhH---HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHH
Q 001357 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVR---YERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1093)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A 113 (1093)
+.++.+-.++|.-|..+=-.+..+++|+.--.-+.-.||-++. .+...+++....+-.+.|.+. +.
T Consensus 675 rqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qik-----------Ev 743 (1666)
T KOG0985|consen 675 RQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIK-----------EV 743 (1666)
T ss_pred HhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHH-----------HH
Confidence 4788899999999999988899999999865544433333221 133445555555555555543 33
Q ss_pred HHHHHHHHhcCCCCh---------------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------
Q 001357 114 TQYYNKASRIDMHEP---------------------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL------- 165 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~---------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------- 165 (1093)
..++...--.+|... .-++.--..|+..++..+=++.|-+ +.+|...+.-
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhhhhcC
Confidence 333332222222111 1112223345555555555555543 2344321110
Q ss_pred -----HHHHHHH---------------HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH---------
Q 001357 166 -----LGQACVE---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA--------- 216 (1093)
Q Consensus 166 -----~~la~~~---------------~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A--------- 216 (1093)
+....+. -+.++..--+.+++..+.....+ +.++..+|.+|...++-.+-
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d-~a~hnAlaKIyIDSNNnPE~fLkeN~yYD 900 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQD-PATHNALAKIYIDSNNNPERFLKENPYYD 900 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcc-hHHHhhhhheeecCCCChHHhcccCCcch
Confidence 1111112 23344445555666666666555 66677777777665543221
Q ss_pred -HHHHHHHHhhCCCc--------------------HHHHHHHHHHHHHhhhHHhHHHHH--------HHHHHHHHh---C
Q 001357 217 -RQAFQRALQLDPEN--------------------VEALVALAVMDLQANEAAGIRKGM--------EKMQRAFEI---Y 264 (1093)
Q Consensus 217 -~~~~~~al~~~p~~--------------------~~a~~~la~~~~~~~~~~~~~~Al--------~~~~~al~~---~ 264 (1093)
...=.-+-+.+|.- -..+..++.......+..-+.+.+ +++.+.+.. .
T Consensus 901 s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 901 SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCc
Confidence 11111111123321 112334444444444433333333 233333332 1
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1093)
..+|.........++..+-..+-+.++++++-..............+.....+ -+....+++..+.-.. +.
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny--Da------ 1051 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY--DA------ 1051 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC--Cc------
Confidence 24566666667778888888888888888774333222222222222222222 2233334444333210 00
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEI----------------------YPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
-.+|.+....+-|++|...|.+.-.. .-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1052 -~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1052 -PDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred -hhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 11334444445555555555432100 0123455666666666666666666555443
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001357 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1093)
Q Consensus 403 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 481 (1093)
+++..|.....+. ..|.|++-+.++..+.+.... +.+-..+..+|.+.++..+-..++
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E------~~id~eLi~AyAkt~rl~elE~fi---------- 1189 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE------PYIDSELIFAYAKTNRLTELEEFI---------- 1189 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC------ccchHHHHHHHHHhchHHHHHHHh----------
Confidence 3444555555555 555666555555554443322 112222333344444443322221
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHH
Q 001357 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (1093)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (1093)
..| +..-.-..|.-+...|.++.|.-+|.. +.-
T Consensus 1190 --------------------------------------~gp-N~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN 1222 (1666)
T KOG0985|consen 1190 --------------------------------------AGP-NVANIQQVGDRCFEEKMYEAAKLLYSN--------VSN 1222 (1666)
T ss_pred --------------------------------------cCC-CchhHHHHhHHHhhhhhhHHHHHHHHH--------hhh
Confidence 122 223334566667777888888777764 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHH
Q 001357 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 641 (1093)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~ 641 (1093)
|..|+..+...|+|..|....+++ ++..+|-..+.++...+.+.-|.-+=-.++-. ..-+-.+.+. |..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivh-----adeLeeli~~-Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVH-----ADELEELIEY-YQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEe-----hHhHHHHHHH-HHh
Confidence 778888888888888888877764 45667777777777766665544331111111 1112234444 544
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CchhHHHHHHH------HHHHhcCCCCCCc
Q 001357 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--QFDVSKDLFTQ------VQEAASGSVFVQM 713 (1093)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g--~~~~A~~~~~~------~~~~~p~~~~~~~ 713 (1093)
. |.+++-+.+++..+.+.......+.-+|++|.+-. +.-+=+++|-. ++... +.
T Consensus 1292 r------------GyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA~------eq 1353 (1666)
T KOG0985|consen 1292 R------------GYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAA------EQ 1353 (1666)
T ss_pred c------------CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHH------HH
Confidence 4 88999999999998888778888888888887543 22233333321 12211 23
Q ss_pred hhHHHHHHHHHHHhcCHHHHHH
Q 001357 714 PDVWINLAHVYFAQGNFALAMK 735 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~ 735 (1093)
...|..+..+|.+-..|+.|.-
T Consensus 1354 ahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1354 AHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHhhhhhhHHHH
Confidence 4556666666766666666543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0078 Score=67.84 Aligned_cols=187 Identities=9% Similarity=-0.034 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...|..........|+++...-.|++++--| ......
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-------------------------------------------A~Y~ef 333 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-------------------------------------------ALYDEF 333 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-------------------------------------------hhhHHH
Confidence 3556666677778899999999999988744 235678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcc
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 606 (1093)
|...++.....|+..-|...+..+.+.+ |..+...+.-+.+....|++..|...++......|+...+-...+.+..+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 8888888888899999988888777754 666777778888888889999999999999988898888887778888888
Q ss_pred cchHHHH---HHHHHhhhcCCCCChHH--HHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001357 607 DDWVKAK---ETFRAASDATDGKDSYA--TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681 (1093)
Q Consensus 607 g~~~~A~---~~~~~~l~~~~~~d~~~--~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 681 (1093)
|+.+.+. ..+.....-........ ++......|.-. ++.+.|...+.+++...|.+-..+..+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 8888877 33333332221112211 111222212222 788889999999999999888877777
Q ss_pred HHHHHhcC
Q 001357 682 GVVLAEKG 689 (1093)
Q Consensus 682 a~~~~~~g 689 (1093)
..+....+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 66655443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.7e-06 Score=75.35 Aligned_cols=109 Identities=12% Similarity=0.202 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 752 (1093)
.+..++.-|......|++.+|+..|+.+....|.+.+ ...+.+.+|.+|+..|++..|+..+++.++.+|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4567788889999999999999999999999997765 4688999999999999999999999999999888887 788
Q ss_pred HHHHHHHHHhhcc---------------HHHHHHHHHHHHHhCCCCc
Q 001357 753 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 753 l~~la~~~~~~g~---------------~~~A~~~~~~al~~~P~~~ 784 (1093)
++..|.+++.... ...|...|++++...|++.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999998876 7889999999999999874
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0059 Score=65.92 Aligned_cols=439 Identities=14% Similarity=0.028 Sum_probs=226.7
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001357 105 EKEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1093)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1093)
++++++++|..+|.++.......+ .++-++....+-..+.+.-...+...-+..|.++...+..|...++.+.|.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 456667799999999876654443 344455566677788888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC----CcHHHHHHHHHH
Q 001357 180 DSLEFYKRALQVHPSC--------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DP----ENVEALVALAVM 240 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p----~~~~a~~~la~~ 240 (1093)
+|+..+..-...-... +-..-...+.|+..+|++.+++..+.+.+.. -| =+.+.+..+..+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 9999887655441111 0111234688999999999999999988763 22 244444443332
Q ss_pred HHHhhhHHhHHHHHHHHHHHH-----HhCCCc-HHHHHHHHHHHHHcC-ChHH---HHHHHHHHHhccCCCCCchHHHHH
Q 001357 241 DLQANEAAGIRKGMEKMQRAF-----EIYPYC-AMALNYLANHFFFTG-QHFL---VEQLTETALAVTNHGPTKSHSYYN 310 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al-----~~~p~~-~~~~~~la~~~~~~g-~~~~---A~~~~~~al~~~~~~~~~~~~~~~ 310 (1093)
+.+. +|-.+. .+.|+. .++.+.+-.++.... -|.+ ...++..+....-..|.
T Consensus 177 lsrS-----------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~------- 238 (549)
T PF07079_consen 177 LSRS-----------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK------- 238 (549)
T ss_pred HhHH-----------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH-------
Confidence 2221 111111 112221 111122211111111 1111 11222222111000010
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDNCETLKALGHI 385 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~ 385 (1093)
...--+-+++..++... ..|.+..+.-.+-.-... +.+++...++.+... ...-....-.+-..
T Consensus 239 -----e~l~~~mq~l~~We~~y----v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 239 -----ERLPPLMQILENWENFY----VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred -----hhccHHHHHHHHHHhhc----cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00111112222222211 223333322222222222 444444444433322 11112333444445
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH------HHH--hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG------ELL--ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIG 455 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la------~~~--~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~la 455 (1093)
..+.++...|..++.-+..++|+.....-.+. .+. ....+..-..++. ........+.. .-+..+...+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~-lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN-LWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH-HHHHHHhhcccHHHHHHHHHHHH
Confidence 56678888888888877777887642221111 111 0011111111111 11111111100 1144556667
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 456 VIHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 456 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
.-+++.|. -++|+.+++.++... +.+...... ...
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-------------------------------------------~yD~ec~n~-v~~ 422 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-------------------------------------------NYDIECENI-VFL 422 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-------------------------------------------cccHHHHHH-HHH
Confidence 77888887 788899998888732 112211110 000
Q ss_pred HHhcCChHHHH--HHHHHHHH---------hcC---ChHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHcCCChhHHHH
Q 001357 535 LEQIHDTVAAS--VLYRLILF---------KYQ---DYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1093)
Q Consensus 535 ~~~~g~~~~A~--~~~~~~l~---------~~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 598 (1093)
+.+ ..|..|+ ..+.+.+. +.| .+.+.-+.|+ ..+...|++.++.-+..-..++.| ++.++..
T Consensus 423 fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RL 500 (549)
T PF07079_consen 423 FVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRL 500 (549)
T ss_pred HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 000 0111111 11111111 111 2233444444 446788999999999999999999 8999999
Q ss_pred hhhhhhcccchHHHHHHHHHh
Q 001357 599 LGDLELKNDDWVKAKETFRAA 619 (1093)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~ 619 (1093)
+|.+.+...+|.+|..++..+
T Consensus 501 lGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 501 LGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999999999854
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.013 Score=69.03 Aligned_cols=227 Identities=18% Similarity=0.120 Sum_probs=133.6
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhh
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 602 (1093)
+.+.+|..+|.+....|...+|++.|-+ .+++..|.....+....|.|++-+.++..+-+... .+.+-..+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 3556788888888888888888877754 35566777777778888888888877776655432 23334445555
Q ss_pred hhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001357 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (1093)
Q Consensus 603 ~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (1093)
|.+.++..+-.... .+| +..-.-..|+- ++.. +.|+.|.-+|..+ .-|-.++
T Consensus 1176 yAkt~rl~elE~fi-----~gp--N~A~i~~vGdr-cf~~------------~~y~aAkl~y~~v--------SN~a~La 1227 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGP--NVANIQQVGDR-CFEE------------KMYEAAKLLYSNV--------SNFAKLA 1227 (1666)
T ss_pred HHHhchHHHHHHHh-----cCC--CchhHHHHhHH-Hhhh------------hhhHHHHHHHHHh--------hhHHHHH
Confidence 66666655433322 122 33333446666 6665 7777777777543 3456677
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 001357 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1093)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~ 762 (1093)
..+...|.|..|....+++ ++..+|-..+......+.|.-|.-+ ... ---.+.-+-.|...|..
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiC-----GL~-iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQIC-----GLN-IIVHADELEELIEYYQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhc-----Cce-EEEehHhHHHHHHHHHh
Confidence 7788888888887776666 3344555554444444444433221 000 00013334445555666
Q ss_pred hccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Q 001357 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (1093)
Q Consensus 763 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~ 799 (1093)
.|-+++-+..++.++-+........--||.+|.++-.
T Consensus 1292 rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 6666666666666666655555555556666655543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.011 Score=66.84 Aligned_cols=394 Identities=14% Similarity=0.064 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-GIGLCRYKLGQLGKARQAFQR 222 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~-~la~~~~~~g~~~~A~~~~~~ 222 (1093)
...+...|...+...|-....|...|..-++.|....+.++|++++..-|-+ ..+|. .++.+....|+...-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4666777777888888888888888888888899999999999988888866 44443 344455566777777788888
Q ss_pred HHhhCCCc---HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------CChHHHHHHHHH
Q 001357 223 ALQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT------GQHFLVEQLTET 293 (1093)
Q Consensus 223 al~~~p~~---~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~ 293 (1093)
|+.....+ ...|-.+......+++ +..-...|.+.++.--.....++..-.-+... -..+++..+-..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 88765443 2334444443333333 55666666666654221111111111111111 011111111111
Q ss_pred HHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhH-------HHHHHHHHHcCCHHHHHHHH
Q 001357 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPY-------YGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 294 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~-------~~la~~~~~~g~~~~A~~~~ 365 (1093)
.... ......+... +.....+..... .+...... ...-.++...-.....+..|
T Consensus 217 ~~~~---------------~~~~~~~~~~---e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 217 VAER---------------SKITHSQEPL---EELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred HHhh---------------hhcccccChh---HHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1000 0000000111 111111110000 00000000 01112233333444444555
Q ss_pred HHHHHh-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001357 366 EKVLEI-----YP---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1093)
Q Consensus 366 ~~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 436 (1093)
+..++. .| .....|......-...|+++...-.|++++--.......|+..+... ..|+..-|-..+..+.
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 554442 12 22345555566666677777777777777665556666777777766 5666666666655555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCC
Q 001357 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (1093)
Q Consensus 437 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 516 (1093)
++.-. ..+.+...-+.+.-..|++..|...++.....
T Consensus 359 ~i~~k----~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------------------------------------- 395 (577)
T KOG1258|consen 359 KIHVK----KTPIIHLLEARFEESNGNFDDAKVILQRIESE--------------------------------------- 395 (577)
T ss_pred hhcCC----CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---------------------------------------
Confidence 54322 12444444555556667777777777766652
Q ss_pred CcCCCCchHHHHHHHHHHHHhcCChHHHHH---HHHHHHHh--cCCh-HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHc
Q 001357 517 HVELPWNKVTVLFNLARLLEQIHDTVAASV---LYRLILFK--YQDY-VDAYLRLAAI-AKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~l~~--~p~~-~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 589 (1093)
. |....+-...+.+....|+.+.+.. ++.....- ++.- ...+...+.. +.-.++.+.|...+.+++...
T Consensus 396 ---~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 396 ---Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred ---C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 2 4444444455555556666666652 22222211 1111 1222222322 334456667777777777777
Q ss_pred CCChhHHHHhhhhhhcc
Q 001357 590 GKYPNALSMLGDLELKN 606 (1093)
Q Consensus 590 p~~~~~~~~l~~~~~~~ 606 (1093)
|.+...+..+..+....
T Consensus 472 ~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 472 PDCKVLYLELIRFELIQ 488 (577)
T ss_pred CccHHHHHHHHHHHHhC
Confidence 77666666655554443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=70.67 Aligned_cols=62 Identities=32% Similarity=0.547 Sum_probs=28.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
..|+|++|+..|++++..+|++ ..+++.+|.||+..|++++|...+.+++..+|+++.++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444444444444444444444 3444444444444444444444444444444444443333
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=72.36 Aligned_cols=98 Identities=27% Similarity=0.318 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 202 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~ 202 (1093)
+.+++.+|.++-..|+.++|+.+|++++...+.. ..+++.+|.++...|++++|+.++++++...|++ ...+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3578889999999999999999999999875443 5688999999999999999999999999988872 2566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
++.++...|+.++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999998887764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.1e-05 Score=73.08 Aligned_cols=98 Identities=27% Similarity=0.265 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1093)
.+++.+|.++-..|+.++|+.+|++++......+....+++.+|.++...|++++|+..++..+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356667777777777777777777777643333444556777777777777777777777777776666 55666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAA 403 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l 403 (1093)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777766554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=88.17 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=85.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHh
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1093)
.++...++++.|+.+|+++...+|.. ...++.++...++..+|+..+.+++...|.+...+...+..++..++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--- 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--- 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---
Confidence 33444567777777777777776653 34467777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
++.|+...++++...|.+...|..|+.+|...|+++.|+..++.+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777777777777777777777777777776666443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=70.19 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=41.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
+..|++++|+..|++++..+|++..+++.+|.+++..|++++|..++.+++..+|++ +.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHh
Confidence 456666666666666666666666666666666666666666666666666666665 44444333
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=76.55 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
-.-|.-++..|+|.+|..-|..+|...|..+ ..|...|.++++++.++.|+..+.+++.++|.+ ..++...+.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAea 177 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEA 177 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHH
Confidence 3456667777777777777777777666542 345556666666666666666666666666666 4445556666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
|.++..++.|+.-|.++++.+|....+.-..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 6666666666666666666666554443333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.012 Score=63.30 Aligned_cols=420 Identities=12% Similarity=0.075 Sum_probs=225.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 001357 14 EVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYY 93 (1093)
Q Consensus 14 ~v~~~~~~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y 93 (1093)
.|+---+.||-|--.|.+-+++.|.+.-.|+++...|-.+|.+++-.+.+++...+-| +++ -+|..
T Consensus 16 kvae~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~------------~aw~l 81 (660)
T COG5107 16 KVAEPSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IME------------HAWRL 81 (660)
T ss_pred cccCcccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--ccc------------HHHHH
Confidence 3444568999988899999999999999999999999999999999999999987633 221 24444
Q ss_pred HHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHH
Q 001357 94 TYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVP 163 (1093)
Q Consensus 94 ~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~ 163 (1093)
...|... ..+|.....+|.+++...- +.+.|... ..|.+.-+ .-+|.++.-...-.+|....
T Consensus 82 y~s~ELA------~~df~svE~lf~rCL~k~l-~ldLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~ 153 (660)
T COG5107 82 YMSGELA------RKDFRSVESLFGRCLKKSL-NLDLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSEN 153 (660)
T ss_pred Hhcchhh------hhhHHHHHHHHHHHHhhhc-cHhHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccc
Confidence 4455544 4466677788888876533 24444432 22222211 22333333333335677666
Q ss_pred HHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-------------cCCHHHHHHHHH
Q 001357 164 ALLGQACVEFN---------RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-------------LGQLGKARQAFQ 221 (1093)
Q Consensus 164 a~~~la~~~~~---------~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~ 221 (1093)
.|...+..+-. +.+.+.-...|.+++..--.+...+|...-..-.. .--+-.|+..|+
T Consensus 154 ~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yq 233 (660)
T COG5107 154 YWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQ 233 (660)
T ss_pred hHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 66665554422 23445556667777765434433333221111111 112455666666
Q ss_pred HHHhh-------CCCcHH-----------HHHHHHHHHHHhhh---HHhHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 222 RALQL-------DPENVE-----------ALVALAVMDLQANE---AAGIRKG-MEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 222 ~al~~-------~p~~~~-----------a~~~la~~~~~~~~---~~~~~~A-l~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
....+ +|-+.. -|......-...+- .+-..+- --.+.+++...|-.+.+|+.....+.
T Consensus 234 e~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~ 313 (660)
T COG5107 234 EIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLI 313 (660)
T ss_pred HHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 55443 222111 12222222221110 0001222 22456666667777777777777777
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH---cC
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---LG 356 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~---~g 356 (1093)
..++-+.|+....+.+... +...+.++.+|....+-+....+|+++++.+. ..+..+..-.. .|
T Consensus 314 ~isd~q~al~tv~rg~~~s------psL~~~lse~yel~nd~e~v~~~fdk~~q~L~-------r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 314 GISDKQKALKTVERGIEMS------PSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK-------RKYSMGESESASKVDN 380 (660)
T ss_pred hccHHHHHHHHHHhcccCC------CchheeHHHHHhhcccHHHHhhhHHHHHHHHH-------HHHhhhhhhhhccccC
Confidence 7777777777777665322 23555666666666666666666666654221 01111111111 22
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE--LLISSDTGAALDAFKT 434 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~--~~~~~~~~~A~~~~~~ 434 (1093)
+++..-+++-+-. ....-+++.+...-.+..-.+.|..+|-++-+..-....+++.-+. .+..+++.-|..+|+-
T Consensus 381 N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifel 457 (660)
T COG5107 381 NFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFEL 457 (660)
T ss_pred CccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHH
Confidence 2322222211111 1223344444444445555667777777765543222333333333 3366777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
.+..+++. +...+..-..+...++-..|..+|+.++.
T Consensus 458 Gl~~f~d~-----~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 458 GLLKFPDS-----TLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHhCCCc-----hHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 66665542 33333344455666777777777776665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.3e-06 Score=68.48 Aligned_cols=60 Identities=33% Similarity=0.475 Sum_probs=30.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.+|+..++|+.|+.+++.++..+|+++..+..+|.+++..|++.+|+..|++++...|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 344445555555555555555555555555555555555555555555555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.014 Score=63.06 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHH----HHH--hcC-CchhHHHHHHHHHH-HhcCCCCCCchhHHHHHH--HHH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGV----VLA--EKG-QFDVSKDLFTQVQE-AASGSVFVQMPDVWINLA--HVY 724 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~----~~~--~~g-~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~lg--~~~ 724 (1093)
+.-++|+.+++.+++..|.+...-+..-. .|. -.+ .+..-+. ++.+++ .+-.++...+...-..|+ ..+
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk-Le~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLK-LEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 44789999999999999988755443211 111 111 1222221 222222 222233334455555554 447
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC----cchhhHHHHH
Q 001357 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFDAGVA 793 (1093)
Q Consensus 725 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~ 793 (1093)
+.+|+|.++.-+-.=..+ -.|.+.++..+|.+++...+|.+|..++.. +-|++ ..+.-.+++|
T Consensus 473 ysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 789999998866443333 345899999999999999999999999874 34433 3445556665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=74.19 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
+-.-|.-+|..|+|.+|..-|..+|...|... ..++.+.|.|+.+++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44556777888888888888888888887762 34566788888888888888888888888888888888888888
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
|.+... ++.|+..|.+++..+|....+.-..+.+--..
T Consensus 178 yek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 178 YEKMEK---YEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 888766 88888888888888888777666665554333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00022 Score=70.71 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
+..+..+++-+ ....+.++.++.-.|.|.-....+.+.++.+ |..+.+...+|.+.++.|+...|..+|+.+-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455555433 2344555566666677777777777777766 5566677777777777777777777777443
Q ss_pred hcCCC-----CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHH
Q 001357 621 DATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1093)
Q Consensus 621 ~~~~~-----~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (1093)
+.... .......+++.+ |.-. +++..|...|.+++..+|.++.+.++.|.|+.-.|+...|+
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 32111 122333344555 5555 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 001357 696 DLFTQVQEAASGSVFVQMPDVWINLAHV 723 (1093)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~~~~~~~lg~~ 723 (1093)
..++.+.+..|+.. .+..+.+||-.+
T Consensus 307 K~~e~~~~~~P~~~--l~es~~~nL~tm 332 (366)
T KOG2796|consen 307 KQLEAMVQQDPRHY--LHESVLFNLTTM 332 (366)
T ss_pred HHHHHHhccCCccc--hhhhHHHHHHHH
Confidence 99999999998653 234566666544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00011 Score=68.99 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
.+.+|...+.. .|.. ...+.+|..+...|++.+|...|++++. ....++..+++++...+..+++..|...++.
T Consensus 75 ~~Rea~~~~~~----ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 75 HLREATEELAI----APTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred HHHHHHHHHhh----chhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455554444 4543 4578899999999999999999999986 3567889999999999999999999999999
Q ss_pred HHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 188 ALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 188 al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
+.+.+|.. .+...+.+|..+..+|.+..|...|+.++...| .+.+....+..+..+|.
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr 208 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGR 208 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcc
Confidence 99998865 466788899999999999999999999999888 45667777777888775
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0007 Score=67.31 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh
Q 001357 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY 74 (1093)
Q Consensus 38 ~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~ 74 (1093)
..+.+|...-.++.+...+++|..-|+..-+.+..++
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl 103 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDL 103 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcce
Confidence 3456888888899999999999998888765554433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=67.24 Aligned_cols=70 Identities=27% Similarity=0.501 Sum_probs=58.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
..+++..++|++|+.++++++..+|.+ +..++..|.|+..+|++.+|+..|+++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 467788888888888888888888887 7778888888888888888888888888888888877665553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-06 Score=88.43 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
+|.|.+|+.+|.+++..+|.++..+.+++.+|++...|..|...+..++.++.....+|...+.+-..+|...+|.+.++
T Consensus 110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E 189 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCE 189 (536)
T ss_pred ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHH
Confidence 44455999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHhCCCC
Q 001357 187 RALQVHPSC 195 (1093)
Q Consensus 187 ~al~~~p~~ 195 (1093)
.+|.+.|+.
T Consensus 190 ~vL~LEP~~ 198 (536)
T KOG4648|consen 190 TVLALEPKN 198 (536)
T ss_pred HHHhhCccc
Confidence 999999997
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.022 Score=61.31 Aligned_cols=421 Identities=12% Similarity=0.040 Sum_probs=223.1
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.+..-++-+|++...|+.+..-+-.+|.+++-.+.|+++..-.|--+.+|......-...++|..-..+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999998888888888877777777889998889999988765443
Q ss_pred hHHHHHHHHHHHHHcC-----C----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh------HHhHHHHHHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLG-----Q----LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~Al~~~~~a 260 (1093)
++|...-..-.+.+ + .-+|.+..-.+.-.+|.....|...+..+..-.. ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33332211111111 1 1222222222333567777777766655443221 12245555566666
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-
Q 001357 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN- 336 (1093)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 336 (1093)
+..--++..-+ -.+|+.-..-.+++-.. ....| -|-.|...|+.......
T Consensus 188 l~tP~~nlekl---------W~dy~~fE~e~N~~TarKfvge~sp-----------------~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 188 LQTPMGNLEKL---------WKDYENFELELNKITARKFVGETSP-----------------IYMSARQRYQEIQNLTRG 241 (660)
T ss_pred HcCccccHHHH---------HHHHHHHHHHHHHHHHHHHhcccCH-----------------HHHHHHHHHHHHHHHhcc
Confidence 65433322111 11222222222221110 00001 12223333333221100
Q ss_pred ---CCCCch-----------hhHHHHHHHHHH-----cCC-HHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001357 337 ---KPHEFI-----------FPYYGLGQVQLK-----LGD-FRSAL-TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 337 ---~~~~~~-----------~~~~~la~~~~~-----~g~-~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1093)
.+|.+. .-|+++...-.. .|+ ...-+ -.+++++...|-.+++|+.........++-+.|
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 000000 012222222111 111 11112 235556666666777777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 001357 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSF 471 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~ 471 (1093)
+....+.+...|. ..+.++.+| ...+.+....+|+++...+... +.++..-.. -|+++...+++
T Consensus 322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHHHH
Confidence 7777666555554 566666777 4455554445555544332211 000000000 11111111111
Q ss_pred HHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001357 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1093)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1093)
-+-. ....-++..+...-.+..-.+.|..+|.++
T Consensus 390 ~kr~----------------------------------------------~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 390 LKRI----------------------------------------------NKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred HHHH----------------------------------------------hhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0000 011223333333333444456777777776
Q ss_pred HHhcCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 552 LFKYQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 552 l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
-+..--...+|..-|.+ +...|++..|..+|+-.+...|+++......-..+...++-..|...|++++..
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred hccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 55332223333333333 456788888999999999999988887777777788888888888888877653
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0006 Score=75.05 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=84.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
++..+++.+|.+...+...+..+..+|+..+|+.++..++-..|.. -.+++.+|.++.+.|...+|--++..++.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3344555566555544444555556788888888888888776654 35678888888888888888777777776666
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
.. ...++.++.++.++|.+......|..+.+..|....+.
T Consensus 281 ~~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 281 FF-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred cc-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 55 44477888888888888888888888888888654443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00068 Score=63.83 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=63.3
Q ss_pred HHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC--
Q 001357 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-- 673 (1093)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-- 673 (1093)
.+.++......|++.+|...|.+++.-.-.+|...++.+++. .+.. +++..|...++++.+.+|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~------------~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI------------QEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh------------ccHHHHHHHHHHHhhcCCccC
Confidence 344555555555555555555555543333344455555555 4444 5555555555555555543
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 740 (1093)
.+.....+|.+|...|.+..|...|+.++..+| .+.....++..+.++|+..+|..-|...
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 334444445555555555555555555555553 3444444555555555555554444333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=67.96 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001357 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 780 (1093)
+...++.++|.+|..+|++++|+.+|++++.....-++ +.++..+|.+|...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45678899999999999999999999999977422221 6678899999999999999999999998753
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00033 Score=61.69 Aligned_cols=98 Identities=22% Similarity=0.182 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~ 207 (1093)
+-..|..+...|+++.|++.|.+++...|.++.+|...|..+.-+|+.++|+..+.+++.+.... ....+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888999999999999999999999999999999999999999999999999999986433 234577899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC
Q 001357 208 YKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p 228 (1093)
..+|+.+.|+.-|+.+-++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999887754
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.041 Score=60.51 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=78.8
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
+...+.-..+-..+...|-+..|...|......-|-....+..+..+-.. .-+..-+..+|+.++.....++.+|..+
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 34455555666777888889999999999988888877777666655322 2247788999999999988999999999
Q ss_pred hhhhhcccchHHHHHHHHHhhhc
Q 001357 600 GDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
-......|..+.+-..|-++++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 99888999888887777777663
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0035 Score=61.53 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-----
Q 001357 527 VLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----- 594 (1093)
Q Consensus 527 ~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 594 (1093)
.+..+|.+|..- .+++.|+..|+++-..... -..+++..+......++|.+|+..|++.....-+++.
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 445667777654 7889999999988765432 2457777888888899999999999998887665554
Q ss_pred --HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
-++.-|.|++-..+.-.+...+++.....|.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3445577777778887888888888787775
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.11 Score=62.95 Aligned_cols=287 Identities=15% Similarity=0.104 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhcCCC----ChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCh
Q 001357 110 FILATQYYNKASRIDMH----EPSTWVGKGQLLL-AKGEVEQASSAFKIVLEADRD--N----VPALLGQACVEFNRGRY 178 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~----~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~ 178 (1093)
...|+++++-+++..+- ...+.+.+|.+++ ...+++.|...+.+++.+... . ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34788888888742221 3457778898888 778999999999999877633 2 23456778888888877
Q ss_pred HHHHHHHHHHHHhCCC---ChHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCcHHHH----HHHHHHHHHhhhH
Q 001357 179 SDSLEFYKRALQVHPS---CPGAIRLGIG--LCRYKLGQLGKARQAFQRALQLD--PENVEAL----VALAVMDLQANEA 247 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~----~~la~~~~~~~~~ 247 (1093)
. |+..+++.+...-. ......+.+. ..+...+++..|+..++.+.... +.++.+. +..+.+....+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~- 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS- 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC-
Confidence 7 99999999887544 2222233332 22323379999999999988765 3444332 223444555554
Q ss_pred HhHHHHHHHHHHHHHh------C----CCcHHHHHHHHH--HHHHcCChHHHHHHHHHHH---hccCCCC----------
Q 001357 248 AGIRKGMEKMQRAFEI------Y----PYCAMALNYLAN--HFFFTGQHFLVEQLTETAL---AVTNHGP---------- 302 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~------~----p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~~~~~~---------- 302 (1093)
...+++.++++... + +....++..+.. ++...|++..+...++.+- ......+
T Consensus 195 --~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~ 272 (608)
T PF10345_consen 195 --PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGS 272 (608)
T ss_pred --chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCee
Confidence 45566655555321 1 222344444433 4566777766655544433 2111110
Q ss_pred ----------------C----------chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-------CCc--------
Q 001357 303 ----------------T----------KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP-------HEF-------- 341 (1093)
Q Consensus 303 ----------------~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~-------- 341 (1093)
. ..-+|+.-|......+..+.|.+++.++++..... +..
T Consensus 273 i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~ 352 (608)
T PF10345_consen 273 IPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASER 352 (608)
T ss_pred EEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHh
Confidence 0 01234445667777788889999998887643211 111
Q ss_pred --------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 342 --------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---PD------NCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 342 --------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
....+..+.+.+-.+++..|...+..+.... |. .+.+++..|..+...|+.+.|..+|.
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1123456677778899999999888777652 22 36788889999999999999999998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.4e-05 Score=83.50 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=47.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+|+++..|+++|.+|+..|+|++|+..|++++.++|++..+ |+.+|++|..+|++++|+..|++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356666677777777777777777777777777777766643 666777777777777777777766665
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0014 Score=67.45 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=134.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc-CCCCChHHHHHhHhHH--HHH
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWN--YFA 641 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~d~~~~~~l~~~~--y~~ 641 (1093)
-+.+....|++.+|.....+.+.-.|.+..++..--.+++.+|+...-...+++++.. .+....|+++. |... ...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~-GmyaFgL~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH-GMYAFGLEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH-HHHHhhHHH
Confidence 3455667899999999999999999999999999999999999999999999999887 44433344331 2110 223
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 001357 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 721 (1093)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg 721 (1093)
. |-+++|.+..+++++++|.+.++...++.++...|++.++.++..+--..-..+. .....-|.+.+
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-mlasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-MLASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-HHHhhhhHHHH
Confidence 3 9999999999999999999999999999999999999999999887655432111 12334567788
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcCCCCH
Q 001357 722 HVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1093)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (1093)
.++...+.|+.|+.+|..-+-+-....|.
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 88999999999999998766543344453
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=66.14 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001357 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 744 (1093)
|+-..+++++|.+|...|++++|+.+|+++++... ++..+....++.++|.+|..+|++++|+.+|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 44567889999999999999999999999998731 12222457789999999999999999999999999864
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0026 Score=62.47 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 001357 391 QIEKAQELLRKAAKIDPRD------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~p~~------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~ 461 (1093)
+..+|+..+++++.+..+. ...++.++.+| ...++++|+.+|+++-..+........ ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555443222 23345778888 557999999999999888765322222 35566677778889
Q ss_pred CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh
Q 001357 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 541 (1093)
Q Consensus 462 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 541 (1093)
++|.+|+..|++.......... .....-..++.-|.|+.-..+.
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~L------------------------------------LKys~KdyflkAgLChl~~~D~ 211 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNL------------------------------------LKYSAKDYFLKAGLCHLCKADE 211 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchH------------------------------------HHhHHHHHHHHHHHHhHhcccH
Confidence 9999999999988763210000 0011223444556677766787
Q ss_pred HHHHHHHHHHHHhcCChHH
Q 001357 542 VAASVLYRLILFKYQDYVD 560 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~ 560 (1093)
-.+...+++....+|...+
T Consensus 212 v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 212 VNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHhcCCcccc
Confidence 7777778888888887544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.7e-05 Score=81.61 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=65.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|.+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999832 46999999999999999999999999997
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.12 Score=59.59 Aligned_cols=607 Identities=12% Similarity=0.071 Sum_probs=284.6
Q ss_pred CCCChhHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhcC-CCc--hhhhhh-hhHHHHHHHHHHHHHHHHH
Q 001357 22 LPRDASDILDILKAEQAPL--DLWLIIAREYFKQGKVEQFRQILEEGS-SPE--IDEYYA-DVRYERIAILNALGVYYTY 95 (1093)
Q Consensus 22 lp~~~~~~~~~l~~e~~~~--~~~~~la~~y~~~g~~~~a~~~l~~a~-~~~--~~~~~~-~~~~~~~~~~~~la~~y~~ 95 (1093)
+.++...+-.+..++.-+- -+-+.....||-.|.|++|+...-.+- ..+ ....|. ......+..+...+.-.+.
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~ 118 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYK 118 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444331 244778899999999999999877763 111 111121 1112222222222211111
Q ss_pred hchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHhC--CCCHHHHHHHHHHH
Q 001357 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV-LEAD--RDNVPALLGQACVE 172 (1093)
Q Consensus 96 ~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~--p~~~~a~~~la~~~ 172 (1093)
.-.. +..--++-..++++++...-.+...|..+|..+.- ..+..++.+ +..+ +.+...++.+....
T Consensus 119 ~~~~------~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yll~l~~s~ 187 (929)
T KOG2062|consen 119 NPEQ------KSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYLLELLISL 187 (929)
T ss_pred Cccc------cCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 1000 00001123344555555544455555555554321 123334443 2222 23344455555555
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHH
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~ 252 (1093)
.....| -.+++..++...-+.+..-++.+..||..+.+.+.+...+++.++. ++...-+.++.-+......+-...
T Consensus 188 v~~~ef--R~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e--~~~llayQIAFDL~esasQefL~~ 263 (929)
T KOG2062|consen 188 VNNREF--RNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE--DDLLLAYQIAFDLYESASQEFLDS 263 (929)
T ss_pred HhhHHH--HHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc--chhhhHHHHHHHHhhccCHHHHHH
Confidence 443222 2334444444332221122677899999999999999999999872 222222222221111111000111
Q ss_pred HHHHHH-----------HHHHhCCCcHHHHHHHHHHHHHcCChHH-HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC
Q 001357 253 GMEKMQ-----------RAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1093)
Q Consensus 253 Al~~~~-----------~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1093)
-+..+. +.+.+-.....+-.. ...++..+..+- .++-....++. ........++..++..|-
T Consensus 264 v~~~l~~d~~~de~p~~kii~ILSGe~tik~~-l~FL~~~N~tD~~iL~~iK~s~r~-----sv~H~A~~iAN~fMh~GT 337 (929)
T KOG2062|consen 264 VLDRLPADDARDEKPMEKIISILSGEETIKLY-LQFLLRHNNTDLLILEEIKESVRN-----SVCHTATLIANAFMHAGT 337 (929)
T ss_pred HHHHcccccccccChHHHHHHHhcCchHHHHH-HHHHHHcCCchHHHHHHHHHHHHH-----hhhhHHHHHHHHHHhcCC
Confidence 111111 111111111111111 222222222221 11111111110 111233345666666653
Q ss_pred HHH-----HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHc
Q 001357 321 YEK-----AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQL 389 (1093)
Q Consensus 321 ~~~-----A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~ 389 (1093)
..+ -+.++.++.. -....+--.+| .+..|+..+|.+++...+-.. |. ...+++.+|.++...
T Consensus 338 T~D~FlR~NL~WlskAtN-----WaKFtAtAsLG--vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~h 410 (929)
T KOG2062|consen 338 TSDTFLRNNLDWLSKATN-----WAKFTATASLG--VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANH 410 (929)
T ss_pred cchHHHHhchhHHhhcch-----Hhhhhhhhhcc--eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCc
Confidence 222 2222222221 00011111223 245788888888887776442 11 236888999988888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001357 390 GQIEKAQELLRKAAKIDPRDAQAF-IDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467 (1093)
Q Consensus 390 g~~~~A~~~l~~~l~~~p~~~~~~-~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 467 (1093)
|+- ..+++...++...+....+ ..||.-+ ..|- .-...|++....+...........-..+|.+....++.+.-
T Consensus 411 G~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS--a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eai 486 (929)
T KOG2062|consen 411 GRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS--ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAI 486 (929)
T ss_pred Ccc--HHHHHHHHHHhccchhhhhhhhhhccchhccc--ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHH
Confidence 765 7888888777654332221 1122211 2222 22345555555443321111123334555555555554433
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001357 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (1093)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (1093)
..++.-+.+. .-....--..+|..+...|+.++|-.+
T Consensus 487 edm~~Ya~ET-------------------------------------------QHeki~RGl~vGiaL~~ygrqe~Ad~l 523 (929)
T KOG2062|consen 487 EDMLTYAQET-------------------------------------------QHEKIIRGLAVGIALVVYGRQEDADPL 523 (929)
T ss_pred HHHHHHhhhh-------------------------------------------hHHHHHHHHHHhHHHHHhhhhhhhHHH
Confidence 3344444331 112333334456666777888889888
Q ss_pred HHHHHHhc-CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 548 YRLILFKY-QD-YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 548 ~~~~l~~~-p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.++++... |- .....+.++..|.-.|+..--..++.-++.-..++..-...++.-+.-..+++....+..-+.+.+..
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNP 603 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcCh
Confidence 88877532 22 12345667777888887665555554444333333333333333344455666666666555444433
Q ss_pred CChH-HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcC-----CchhHHH
Q 001357 626 KDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL---YAANGAGVVLAEKG-----QFDVSKD 696 (1093)
Q Consensus 626 ~d~~-~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~a~~~la~~~~~~g-----~~~~A~~ 696 (1093)
+-.| +.+.||.. + .. .-..+|+.+++.+.. +|.+. .++..++.+++++. ++..-++
T Consensus 604 HVRyGaA~ALGIa-C-AG------------tG~~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 604 HVRYGAAMALGIA-C-AG------------TGLKEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hhhhhHHHHHhhh-h-cC------------CCcHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 2222 44455544 2 22 335678888888777 66643 46677777777654 3344445
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001357 697 LFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1093)
Q Consensus 697 ~~~~~~~~~p~~~~~~~~~~~~~lg~~~~ 725 (1093)
.|.+++.. .+.+++..+|-++.
T Consensus 669 ~l~kvI~d-------KhEd~~aK~GAilA 690 (929)
T KOG2062|consen 669 QLEKVIND-------KHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHhhh-------hhhHHHHHHHHHHH
Confidence 55555442 34566666666643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00047 Score=60.70 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHHHHH
Q 001357 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 757 (1093)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la 757 (1093)
.-|.++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+..+|+.-+.++++....... ...+..-|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 346777788888888888888888887 77888888888888888888888888888887543332 55666778
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCC
Q 001357 758 RTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 758 ~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
.+|...|+-+.|..-|+.+-++..
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCC
Confidence 888888888888888887777653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00065 Score=73.07 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
+|+.......+.+..+.|..+|.+++...+.+...|...|.+.+. .++...|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 444555555555555556666666554333445555555555444 334444666666666655555 444555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
..|+.+.|+.+|++++..-|... ..|......-...|+ ......+..++.+..|...
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 55666666666666655544333 345555555555555 5555566666666655533
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0047 Score=68.33 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=77.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 152 ~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
...++..|.+......-+.....+|+..+|+.++..++-..|.. ...+++.+|.++.+.|...+|--++..|+.-.|.-
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 34445555554444444444445688888888888877765443 34567778888888888888877777777766665
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
..-++.++.++...++ +...+..|..+.+..|....
T Consensus 283 t~n~y~l~~i~aml~~---~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 283 TSNYYTLGNIYAMLGE---YNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred cccceeHHHHHHHHhh---hhhhhhhhhhhhccCcchhH
Confidence 5567777888877777 67777777777777765443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0009 Score=71.96 Aligned_cols=126 Identities=11% Similarity=0.177 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 733 (1093)
+..+.|..+|.++++..+.+...|...|.+... .++...|..+|+..++..| .++.+|..+...+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 779999999999997666677888888888666 5666669999999999998 7899999999999999999999
Q ss_pred HHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 734 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 734 ~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999998854444 4568888888888999999999999999999998644
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0004 Score=65.85 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 177 (1093)
-.|+.|.+.++.....+|.+++.++.-|.+++...+ +++|+.-|+.++.++|+...++..+|.++...+.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 356788888998899999999999988888776633 4667777777778888888888888877766542
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
+ .|+. .. ....|++|..+|+++...+|+|......|...
T Consensus 85 l-------------~~d~-~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 L-------------TPDT-AE----------AEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H----------------H-HH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred h-------------cCCh-HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1 1111 00 00124566666677777777666655555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.021 Score=67.92 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG--- 176 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g--- 176 (1093)
...|..+|+.+... .+..+.+.+|.+|+.- .+.+.|+.+|..+... .-.++.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45788888887654 4677777888887765 5789999999888761 1125667888888888743
Q ss_pred --ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhH
Q 001357 177 --RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1093)
Q Consensus 177 --~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1093)
++..|+.+|.++-.....+ ..+.+|.|+..-. ++..|..+|..+... .+..+.+.++.++..- |-..+.
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6788999998888776544 5677888887766 567888888888654 5778888888777653 223347
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CChHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQL 290 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~ 290 (1093)
..|..++.++...+ ++.+...++.++... +.+..+...
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~ 419 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALAL 419 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHH
Confidence 88888888888877 344444444433322 444444333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0072 Score=59.82 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 418 ELLISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 418 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
.++...+++.|+.+|++++.++...+.. ...+.+...+.++.+...+.+|-..|.+-......
T Consensus 119 k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---------------- 182 (308)
T KOG1585|consen 119 KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---------------- 182 (308)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH----------------
Confidence 3446678899999999999887764332 22577778888999999999998888765442110
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHc
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKAR 572 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~ 572 (1093)
. ...+.....+.....++....++..|...|+...++ .|+...+..+|...| ..
T Consensus 183 --------------~-------~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 183 --------------C-------DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred --------------H-------hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 0 012223344555566677777899999888876542 234455555555444 55
Q ss_pred CCHHHHHHHHH
Q 001357 573 NNLQLSIELVN 583 (1093)
Q Consensus 573 g~~~~A~~~~~ 583 (1093)
|+.++...++.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 67776665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0027 Score=65.43 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHH
Q 001357 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-YPDN---CETLKALGH 384 (1093)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~la~ 384 (1093)
...+.+....|++.+|-..+.+.++ ..|....++..--.+++..|+...-...+++++.. +|+. ..+.-.++.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 3445566778888888888888888 55666666666677888889888888888888866 5544 455666788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
.+...|-+++|.+.-+++++++|.+..+...++.++ ..+++.++.++..+........ ......-|...+.++...+.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-WMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-hHHHhhhhHHHHHhhhcccc
Confidence 888889999999999999999999999999999999 8888988888776544333221 11112345567888888999
Q ss_pred HHHHHHHHHHHHh
Q 001357 464 FESAHQSFKDALG 476 (1093)
Q Consensus 464 ~~~A~~~~~~al~ 476 (1093)
|+.|+.+|..-+-
T Consensus 263 ye~aleIyD~ei~ 275 (491)
T KOG2610|consen 263 YEKALEIYDREIW 275 (491)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999987654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.088 Score=61.05 Aligned_cols=120 Identities=20% Similarity=0.183 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
....+..++....... |..+-..+..|+++...|+.++|+..|++++..-. -..-...+++.++.++....+|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445666666666443 55556677777777777778888877777663111 1122235678888888889999999
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 001357 362 LTNFEKVLEIYPDN-CETLKALGHIYVQLGQI-------EKAQELLRKAAKI 405 (1093)
Q Consensus 362 ~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~l~~~l~~ 405 (1093)
..+|..+.+.+.-. ....+..|.|+...++. ++|..+|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99998888865443 34556677888888888 8888888888654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=62.93 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS---DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~---~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
|+.|.+.++.....+|.++.+++.-|.++..+.++. ++.. -+++|+.-|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~----------------------------miedAisK~ 58 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK----------------------------MIEDAISKF 58 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH----------------------------HHHHHHHHH
Confidence 456666666666666666666666666555443321 1111 135666677
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 221 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
+.+|.++|+...++..+|.++...+. ...+++|..+|+++...+|.+......|
T Consensus 59 eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 59 EEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 77788888888888888877776654 1348899999999999999998655444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0017 Score=71.20 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------C--
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------D-- 160 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----------------------~-- 160 (1093)
|+.+.+.-++.-.+|+.++|+.+.+|+.++.-. ..-..+|..+|+++++... .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 345566788899999999999999999887532 2335666666666654211 0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALA 238 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la 238 (1093)
.+.+...+|.|..+.|+.++|++.|+.+++..|. +...++..+..++..++.+.++...+.+.-.+ -|......+.-+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 1344577899999999999999999999998876 35678999999999999999999998886433 255555555555
Q ss_pred HHHHHh-hh------------HHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 239 VMDLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 239 ~~~~~~-~~------------~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
.+..+. ++ ...-..|++.+.++++.||..+..+.
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 544331 11 11124577888999999998875543
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0097 Score=58.94 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=95.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1093)
....+.++..+++++..+....|.+.....-...+.-....-+.+.|+.+|++++..-.. +.
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~-----~d------------- 144 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE-----DD------------- 144 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-----cc-------------
Confidence 334444455555555554444444433333333333344556888999999998873110 00
Q ss_pred HhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH------hcCChHHHHHHHHHHHHHcCC
Q 001357 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRLAAIAKARNN 574 (1093)
Q Consensus 501 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~g~ 574 (1093)
....-...+-..++++.+...+.+|...+.+-.. ..|+....+.....+++-..+
T Consensus 145 -------------------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D 205 (308)
T KOG1585|consen 145 -------------------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD 205 (308)
T ss_pred -------------------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH
Confidence 0112334566678888999999998877765433 234444456666666777789
Q ss_pred HHHHHHHHHHHHHHc----CCChhHHHHhhhhhhcccchHHHHHHHH
Q 001357 575 LQLSIELVNEALKVN----GKYPNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 575 ~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
|..|..+++...++. |.+..+..+|... +..|+.+++...+.
T Consensus 206 yv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 206 YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 999999999877654 4555566666665 35677766665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0039 Score=68.52 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=115.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcc
Q 001357 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (1093)
Q Consensus 568 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~ 647 (1093)
-..+..+...-++...+|++++|+++.++..++.= ...-..+|..+|+++++.... .++.. ....
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~----- 241 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ----- 241 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh-----
Confidence 34455677777777888888888887777766642 233466777777777664321 11111 0000
Q ss_pred cCchHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001357 648 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1093)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~ 725 (1093)
...-+-..+...+. .+++-..+|.+.-+.|+.++|+..|+.+++..|.. ++..++.+|..+++
T Consensus 242 ------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LL 306 (539)
T PF04184_consen 242 ------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALL 306 (539)
T ss_pred ------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHH
Confidence 00001111111222 24556788999999999999999999999877732 46779999999999
Q ss_pred HhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh-hcc---------------HHHHHHHHHHHHHhCCCCcc
Q 001357 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 726 ~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~-~g~---------------~~~A~~~~~~al~~~P~~~~ 785 (1093)
..+.|.++..++.+. .....+..+.+.|..+-.-.+ .|+ -..|.+.+++|++.+|.-+.
T Consensus 307 elq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 307 ELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 999999998886553 211123335555544443322 111 13377899999999997653
|
The molecular function of this protein is uncertain. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00061 Score=66.94 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=87.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (1093)
-|..++....|..|+.+|.+++.++|..+..+.+.+.||++..+++.+.....+++++.|+....++.+|..+ ....++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4555666677888888888888888888888888888888888888888888888888888888888888877 777888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001357 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 468 (1093)
.|+..+.++..+...........+...|-.+-...=...++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~ 137 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEK 137 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHH
Confidence 888888888777766554444455554444433333333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=52.14 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1093)
|.+|+.+|..|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567788888888888888888888888888888888887764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=74.61 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=123.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhc
Q 001357 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1093)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 123 (1093)
+.+....--.|+-+.++++|..+..... ...-+..+..|+.+..-.+-...+ . .......|..++......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~-------i~~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSEN-------IRSPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKR 262 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCC-------cchHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHh
Confidence 3444444456888999999998765321 111233333333222222222211 1 345566899999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
.|+.+..++..|.++...|+.++|+..|+.++..... ...+++.++.++..+++|++|...|..+.+.+.-+...+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999988743222 245688899999999999999999999999887777777
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHh
Q 001357 200 RLGIGLCRYKLGQL-------GKARQAFQRALQ 225 (1093)
Q Consensus 200 ~~~la~~~~~~g~~-------~~A~~~~~~al~ 225 (1093)
.+..|.|+..+|+. ++|...|.++-.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88899999999988 666666655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=65.30 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+.|..|+..|.+++.++|..+..|..++.++++..+++.+.....++++++|+.+.+.+.+|.++.....|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34566888899999999998888888899999998899999999999999999888889999999888899999999888
Q ss_pred HHHHh
Q 001357 187 RALQV 191 (1093)
Q Consensus 187 ~al~~ 191 (1093)
++..+
T Consensus 103 ra~sl 107 (284)
T KOG4642|consen 103 RAYSL 107 (284)
T ss_pred HHHHH
Confidence 88654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.26 Score=54.56 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRA 223 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a 223 (1093)
..-..+|+.++...+.++..|........+.+.+.+--.+|.+++..+|++ +++|...|...+.-+. .+.|+..|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-PDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-chhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445667777777777777777777777777777777777888888888877 6677777766666655 77777777788
Q ss_pred HhhCCCcHHHHHHHHHHH
Q 001357 224 LQLDPENVEALVALAVMD 241 (1093)
Q Consensus 224 l~~~p~~~~a~~~la~~~ 241 (1093)
|+.+|+++..|...-.+-
T Consensus 167 LR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRME 184 (568)
T ss_pred hhcCCCChHHHHHHHHHH
Confidence 777777777766554443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00029 Score=51.25 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677777777777777777777777777777777777664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.06 Score=64.03 Aligned_cols=180 Identities=23% Similarity=0.203 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001357 213 LGKARQAFQRALQLDPENVEALVALAVMDLQA--NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1093)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1093)
...|...|+.+... .+..+...+|.++..- |...+.+.|+.+|..+...
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~--------------------------- 278 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES--------------------------- 278 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH---------------------------
Confidence 45677777776544 5677777777776654 3344577788877777653
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC---CHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHSKG-----DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG---DFRSAL 362 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~ 362 (1093)
+.++... ..+.+.+.+|.+|.... ++..|+.+|.++.. ...+.+.+.+|.++.... ++..|.
T Consensus 279 ~~~~a~~-----~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-----~g~~~a~~~lg~~~~~g~~~~d~~~A~ 348 (552)
T KOG1550|consen 279 FKKAATK-----GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-----LGNPDAQYLLGVLYETGTKERDYRRAF 348 (552)
T ss_pred HHHHHhh-----cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-----cCCchHHHHHHHHHHcCCccccHHHHH
Confidence 1111111 12246667777777643 67778888888875 344566788888877665 567888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTA 435 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a 435 (1093)
.+|..+... .+..+.+.++.||..- -+...|..+|.++...+ .+.+...++.++ ..+.+..+...+...
T Consensus 349 ~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 349 EYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 888888764 4778888888887654 36788888888888776 455555666655 235666555544433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.064 Score=60.52 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
.......+..++.+....|.++.|...+..+....... ...+.+.+..+..+...|+..+|+..+...+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456677888888888888888888888877643222 22567778888888888888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.25 Score=53.23 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhh----------CCC----cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001357 200 RLGIGLCRYKLG-QLGKARQAFQRALQL----------DPE----NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 200 ~~~la~~~~~~g-~~~~A~~~~~~al~~----------~p~----~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1093)
++..|......+ +++.|...+++++++ .|+ ...++..++.+++..+......+|...+..+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 444444444444 555555555544443 111 12446677777777777667777888887777777
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1093)
|+.+.++..-..+....++.+.+...+.+++....
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 87777776656666667777788888877776543
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.025 Score=58.43 Aligned_cols=152 Identities=18% Similarity=0.076 Sum_probs=87.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
....-+..+.-....|++.+|...|..++...|.+..+.+.++.++...|+.+.|..++...-.................
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34445666777778888888888888888888888888888888888888888887777654332222211110001122
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcC
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTG 282 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g 282 (1093)
+.+.....+. ..+++.+..+|++..+.+.++..+...|+ .+.|+..+-..++.+- .+..+...+..++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222221 12334445566666666667766666666 6666666666655542 23333344444443333
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00031 Score=76.62 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
...|..|+..|.+++.++|+.+..+-.++.+++..++|..|+.-+.++++.+|....+|+..|..+...+.+.+|+..|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCC
Q 001357 187 RALQVHPSC 195 (1093)
Q Consensus 187 ~al~~~p~~ 195 (1093)
......|+.
T Consensus 97 ~~~~l~Pnd 105 (476)
T KOG0376|consen 97 KVKKLAPND 105 (476)
T ss_pred HhhhcCcCc
Confidence 666666665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.044 Score=59.92 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChhHHHHhhhhhhc---ccchHHHHHHHHHhhhcCCCCChHHHH
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYATL 632 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~d~~~~~ 632 (1093)
+....+-..|....+|+.-+.+++.+-.+ -+..+.+.+.+|.++.+ .|+.++|+..+..++.....+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444445566666666666666555444 34455566666666666 677777777777766655555666666
Q ss_pred HhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhH
Q 001357 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1093)
Q Consensus 633 ~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 694 (1093)
.+|.+ |-......... .....++|+..|.++.+.+| +.+.-.+++.++...|...+.
T Consensus 222 L~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 222 LLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccc
Confidence 67777 65543221100 11568999999999999995 455556667777766654443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00048 Score=75.14 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
-..+..++..+.|+.|+.+|.+++.++|+++..+-..+..+++.++|..|+.-+.++++.+|.. ...|+..|.++..++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3456777888899999999999999999999999899999999999999999999999999988 667888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
.+.+|+..|+....+.|+.+.+...+..+...
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 99999999999999999988887776665433
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0082 Score=59.35 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDN----------VPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
..++...|+-++..|+|.+|...|..++.. .|.. .+.+++.+.|+...|+|-+++.....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356777899999999999999999887642 3433 3456777778888888888888888888
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
...|.+ ..+++..|.+....=+..+|..-|.++|+++|.-..
T Consensus 258 ~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 888887 666777888877777888888888888888775433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.2 Score=53.92 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=96.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh
Q 001357 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1093)
Q Consensus 458 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1093)
....|+++.|..++.++-.... ..++ ........++++.|.....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~---~~~~--------------------------------~~~~~La~~~yn~G~~l~~ 47 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN---SLDP--------------------------------DMAEELARVCYNIGKSLLS 47 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh---cCCc--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3567899999999988866320 0000 0011245688999999999
Q ss_pred cC-ChHHHHHHHHHHHHhc----------CCh----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHcCCChhHHHHh
Q 001357 538 IH-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 538 ~g-~~~~A~~~~~~~l~~~----------p~~----~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
.+ +++.|..++++++... |+. ..++..++.++...+.++ +|..+++.+-...|+.+.++...
T Consensus 48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK 127 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 99 9999999999998762 111 446777888888777654 45666666767778888888777
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCC
Q 001357 600 GDLELKNDDWVKAKETFRAASDATD 624 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~~~ 624 (1093)
..+..+.++.+.+...+.+++...+
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcc
Confidence 7777778999999999999998765
|
It is also involved in sporulation []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.68 Score=53.04 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 001357 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1093)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1093)
+++|...|-.+-+.+ ....++...|++-.+.++++..-. ...+.....++..+|..+..+..++.|.++|.
T Consensus 750 feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765432221 223466777888877777664321 11223445789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1093)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~ 409 (1093)
..-. .-++..+++....|++-.. ....-|++...+-.+|..+...|.-++|.+.|-+.- .|.
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk- 882 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK- 882 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-
Confidence 7653 3345677777777766433 334458888999999999999999999999886531 121
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 410 ~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
+ .+..+-..++|.+|.+..++.. +|. ...+....+.-+...++.-+|++..+++
T Consensus 883 --a--Av~tCv~LnQW~~avelaq~~~--l~q-----v~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 --A--AVHTCVELNQWGEAVELAQRFQ--LPQ-----VQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred --H--HHHHHHHHHHHHHHHHHHHhcc--chh-----HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1222235667777776544321 111 1223333445566677888888877776
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.06 Score=58.86 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 376 (1093)
+-.++.+.+-.|++++|+..++++++..|...
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 44455666667777777777777777766544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.65 Score=55.41 Aligned_cols=238 Identities=15% Similarity=0.077 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN- 594 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 594 (1093)
+......+.......++.+|..+..++...-|. .....-..+.+....|+++.|..+.+.++..-|.+..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 344444566666677777777777776654332 1233344456667778888888888888877665433
Q ss_pred ----HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH-----HhHhHHHHHHHhhcccCchHHHHH--HHHHHHH
Q 001357 595 ----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-----SLGNWNYFAALRNEKRAPKLEATH--LEKAKEL 663 (1093)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~-----~l~~~~y~~~~~~~~~~~~~~~~~--~~~A~~~ 663 (1093)
++..+|.+..-.|++.+|..+...+.+.....+.+.+. .-+.+ .... |+ +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~~ 561 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEKA 561 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHHH
Confidence 56677777778888888888877766654333333221 11222 2222 42 2222222
Q ss_pred H----HHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcC-CCCCC-chhHHHHHHHHHHHhcCHHHHHHHH
Q 001357 664 Y----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQ-MPDVWINLAHVYFAQGNFALAMKMY 737 (1093)
Q Consensus 664 ~----~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~ 737 (1093)
| .+-+...|...+.....+.++...-+++.+..-....++.... .+.+. ...+++.|+.+++..|++++|...+
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2 2334445555555555555544433355555555555444321 11111 2223358899999999999999999
Q ss_pred HHHHHhhcCCC-C----HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001357 738 QNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLR 775 (1093)
Q Consensus 738 ~~al~~~~~~~-~----~~~l~~la~~~~~~g~~~~A~~~~~~ 775 (1093)
..+......+. . ..+.......+...|+...|...+.+
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99888765543 1 22222233445568999998888876
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.11 Score=52.42 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=144.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1093)
.|+++-..++.++|.+-.+|..+-.++-..+ +..+-+..+..++..+|.|-..|...-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776654 6788899999999999999999999999999999988 8899999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hh--hHHhHHHHHHHHHHHHHhCCC
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-AN--EAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~--~~~~~~~Al~~~~~al~~~p~ 266 (1093)
..+..+ -.+|...--|+...+.++.-+.+...+++.+-.|-.+|...-.+... .| +....+.-+.+....+.+.|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988777 55677777788888889999999999999988887777654432222 11 112356667888889999999
Q ss_pred cHHHHHHHHHHHHH-cC--ChHHHHHHHHHHH
Q 001357 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1093)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 295 (1093)
+..+|+.|..++.. .| .+..+..+.....
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999888875 44 2333444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.12 E-value=2 Score=56.93 Aligned_cols=392 Identities=12% Similarity=0.048 Sum_probs=202.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.++.+-++.+.|..|..+++.-.............++.+-.+|...++++.-.-....-. ..+ .........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~----sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADP----SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCc----cHHHHHHHH
Confidence 566777778888888888777421111111222344445557777777776665554311 111 244455566
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHH
Q 001357 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALD 430 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~ 430 (1093)
...|++..|..+|+.+++..|+....+..+-......+.+...+...+-.....++...-+..++.-- ..++|+.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 67788888888888888888876666666666666666766666655555444444444444444322 4444443332
Q ss_pred HHH-------HHH---HHHHhcCCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc----
Q 001357 431 AFK-------TAR---TLLKKAGEEVPIEV-----------LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD---- 485 (1093)
Q Consensus 431 ~~~-------~a~---~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 485 (1093)
++. .+. .+.-.......... ..++..+ ...|.|..+..+.-++...+.-.....
T Consensus 1540 ~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~-s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1540 YLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSAC-SIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred hhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 211 000 00000000000011 0011111 111233333333333322211000000
Q ss_pred -cccchhhhhh---------hhhHHHhh--hhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001357 486 -SKTKTYVIDA---------SASMLQFK--DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1093)
Q Consensus 486 -~~~~~~~~~~---------~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1093)
........+. ....+..+ .+.+...+...............+|.+.|++....|.++.|....-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 0000000001 00111111 11122222222222235567788999999999999999999988888776
Q ss_pred hcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CC----------Chh------HHHHhhhhhhcccc--hHHHHH
Q 001357 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GK----------YPN------ALSMLGDLELKNDD--WVKAKE 614 (1093)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~~~------~~~~l~~~~~~~g~--~~~A~~ 614 (1093)
.. -+.++...|..+...|+...|+.+++..+..+ |+ ... +...++...-..++ -..-++
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk 1776 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILK 1776 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 55 46788999999999999999999999999765 22 111 22233333333344 344567
Q ss_pred HHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHH---HHHHHHHHHhhCCCCHHH
Q 001357 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK---AKELYTRVIVQHTSNLYA 677 (1093)
Q Consensus 615 ~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~p~~~~a 677 (1093)
.|..+....|. ....++.+|.. |.......+.+.....|++.. ++-.|.+++..+..+++.
T Consensus 1777 ~Y~~~~ail~e-we~~hy~l~~y-y~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1777 YYHDAKAILPE-WEDKHYHLGKY-YDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHHHHHHHccc-ccCceeeHHHH-HHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH
Confidence 77778777763 22233345543 433322222222233466666 677777888776555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.17 Score=55.12 Aligned_cols=128 Identities=18% Similarity=0.103 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
+|+...|-+.+..+++..|.+|......+.+....|.|+.|...+..+-..-..-..+...+-..++..|+++.|+..-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 56677888888889999999999999999999999999999999887765544445566666778889999999999988
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
-++...-.. +.+....+...-.+|-+++|...|++++.++|.....|+
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 888765555 333333455556788899999999999999886544443
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.013 Score=58.07 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC----------chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHE----------FIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
.++...|+-++..|+|.+|...|..++..+ ...|. ....+.++++|+...|+|-++++.+..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 455666777777777777777777766422 11121 224578899999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001357 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 413 (1093)
.+|.+..+++..|.+....=+..+|...|.+++.++|.-..+.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999998765443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00044 Score=46.77 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001357 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1093)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 148 (1093)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.09 E-value=1.1 Score=53.50 Aligned_cols=278 Identities=17% Similarity=0.058 Sum_probs=167.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-----DN 375 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 375 (1093)
+...+.+..-+.-+...|...+|+...-.+- +|... ......+.-+...++..- +..+++.-| .+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 3345667777777788888888887665542 22221 122223333444444332 333333333 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001357 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (1093)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~--~-------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1093)
+......+.......++.+|..++.++...-|. . ....-..+.+. ..++++.|....+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 566667777888889999999999888764322 1 12222233344 7899999999999999988876666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchH
Q 001357 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1093)
Q Consensus 446 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 525 (1093)
....++..+|.+..-.|++++|..+...+....... +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------------------------------------~~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-------------------------------------DVYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------------------------------------ccHHHHH
Confidence 667888899999999999999999999887742100 0122344
Q ss_pred HHHHHHHHHHHhcCChHHHH--HHHHHH----HHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChh-
Q 001357 526 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 594 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~- 594 (1093)
.+.+..+.++..+|+...|. ..+..+ +...|-........+.++...-+++.+..-....+.+ .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 55566688888888443333 233222 2233432222222222222222244444444444333 333322
Q ss_pred --HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
+.++++.+++..|++++|...+..+......
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 3357899999999999999999988775433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0015 Score=44.36 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 750 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
+.+++.+|.+++..|++++|+..|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566777777777777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00078 Score=45.55 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=24.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001357 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (1093)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al 182 (1093)
|+++++.+|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777765
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.36 Score=54.43 Aligned_cols=69 Identities=9% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
......|...+.+....|.++.|...+.++...... ....+.+.+..+.++...|+..+|+..+...+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999998863211 122456778889999999999999999988887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=1.3 Score=52.45 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 001357 655 THLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 732 (1093)
..+..|...|....... -.....+...|.+.+ .+++.+.|+.+...+.....+ .....|+....+-...|+...
T Consensus 440 ~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~ 515 (881)
T KOG0128|consen 440 AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPS 515 (881)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchh
Confidence 66777888777776652 223344555666665 467999999999888775531 233478888888888899999
Q ss_pred HHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhccHHHHHHH
Q 001357 733 AMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKS 772 (1093)
Q Consensus 733 A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~ 772 (1093)
|..++.+|+.....+.+ -.++...-+.....|.++.....
T Consensus 516 ~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 516 ARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 99999999886544443 44555555555556666654433
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.024 Score=62.88 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=120.5
Q ss_pred ChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001357 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1093)
Q Consensus 25 ~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~--y~~~g~~~~~ 102 (1093)
|+..|+.+|...|--.+++++++..+..+|+...|..++++|+-. | ++. .+.....+ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 899999999999999999999999999999999999999998622 1 000 00000000 00111111
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCC
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a-~~~la~~~~~~g~ 177 (1093)
..-..+.|- .+++.....+.+.|-+..|+++++-++.++|. ++.+ ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 000112222 34556678888999999999999999999998 6654 4444455577788
Q ss_pred hHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 001357 178 YSDSLEFYKRALQVHPSC----PGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1093)
|+--+.+++......... .+...+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 887788877765521111 234567888999998888 7888888888887764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=53.86 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHH
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNY 639 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y 639 (1093)
+.-+.-+.-....|++.+|...|..++...|.+..+...++.+|+..|+.+.|...+..+-..........+ .+.+.+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l--~a~i~l 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL--QAQIEL 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH--HHHHHH
Confidence 344455566778899999999999999999999999999999999999999999998865333222111111 111101
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHH
Q 001357 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719 (1093)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 719 (1093)
...+ ....+ ...+.+.+..+|+|+.+.+.++..+...|+.+.|++.+-.++..+.+- .+..+.-.
T Consensus 213 l~qa-----------a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk~ 277 (304)
T COG3118 213 LEQA-----------AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARKT 277 (304)
T ss_pred HHHH-----------hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHHH
Confidence 1111 11111 234566677899999999999999999999999999999988876432 34445555
Q ss_pred HHHHHHHhcC
Q 001357 720 LAHVYFAQGN 729 (1093)
Q Consensus 720 lg~~~~~~g~ 729 (1093)
+-.++...|.
T Consensus 278 lle~f~~~g~ 287 (304)
T COG3118 278 LLELFEAFGP 287 (304)
T ss_pred HHHHHHhcCC
Confidence 5555444443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=1.4 Score=54.89 Aligned_cols=91 Identities=23% Similarity=0.251 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001357 106 KEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAK----G---EVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1093)
..+.|+.|+..|.++...-|... .+.+..|..++.+ | .+.+|+..|+.. ...|.-|--|++.|.+|.++
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRL 565 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHh
Confidence 36677888888888877777543 4566667666544 2 367777777664 33566677788888888888
Q ss_pred CChHHHHHHHHHHHHhCCCChH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPG 197 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~ 197 (1093)
|+|.+-++.|.-+++..|+.+.
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCc
Confidence 8888888888888888877743
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.1 Score=50.50 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1093)
.+...++..+...|++++|...++.++....+..-...+-..++.+++..|.+++|+..+...... .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 445566777778888888888888777532222222345567788888888888888877665321 1123345667888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
+...|+..+|+..|.+++...++
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 88888888888888888877643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0021 Score=43.70 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
.+|+.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.081 Score=58.16 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~ 257 (1093)
.+.-+.+|++|++.+|.+ ..+++.+-.+..+....+.....|++++..+|++...|..+.......-..-.+......|
T Consensus 47 ~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345677888888888877 6667777777777778888888888888888888888776655443321111145555555
Q ss_pred HHHHH
Q 001357 258 QRAFE 262 (1093)
Q Consensus 258 ~~al~ 262 (1093)
.+++.
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.066 Score=51.76 Aligned_cols=103 Identities=21% Similarity=0.047 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
.+...++..++..+++++|+..++.++..+.+....+.+-..++++...+|.+++|+..+..... ..-........
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHh
Confidence 34456677888888888888888888876666666667788899999999999999998876542 22223345668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1093)
|.++...|+-.+|+..|.+++...+..
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999999886543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0021 Score=43.63 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0034 Score=42.59 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+|+.+|.+++..|++++|+..|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.37 Score=48.79 Aligned_cols=147 Identities=11% Similarity=0.017 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHcCCChhHH
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNAL 596 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~ 596 (1093)
.+..+|...--+....+.++.-+.+...+++.+--+-.+|+..-.+... .| ..+.-+.+..+.+...|++..+|
T Consensus 145 KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaW 224 (318)
T KOG0530|consen 145 KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAW 224 (318)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 4455555555555566667777777777776665555555443322221 11 12334556677778888888888
Q ss_pred HHhhhhhhc-cc--chHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH-hhCC
Q 001357 597 SMLGDLELK-ND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHT 672 (1093)
Q Consensus 597 ~~l~~~~~~-~g--~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p 672 (1093)
..|.-++.. .| ............+...+...++.+..+.++ |...+...+...+ .-..+|..+|+.+- +.+|
T Consensus 225 nYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~---~~a~~a~~ly~~La~~~Dp 300 (318)
T KOG0530|consen 225 NYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAE---ELARKAVKLYEDLAIKVDP 300 (318)
T ss_pred HHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccch---HHHHHHHHHHHHHhhccCc
Confidence 877777664 33 133333444444334455567777677777 6222222111111 11224677776655 5555
Q ss_pred C
Q 001357 673 S 673 (1093)
Q Consensus 673 ~ 673 (1093)
-
T Consensus 301 i 301 (318)
T KOG0530|consen 301 I 301 (318)
T ss_pred H
Confidence 4
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.66 E-value=4.4 Score=53.95 Aligned_cols=329 Identities=12% Similarity=0.041 Sum_probs=183.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcC
Q 001357 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124 (1093)
Q Consensus 45 ~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~ 124 (1093)
++|.+-++.|.|.+|+-.+++-...+... .-.-..+..+-.+|..++.... ..-.... ...+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~------~~~e~l~fllq~lY~~i~dpDg-----------V~Gv~~~-r~a~ 1449 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK------ETEEALYFLLQNLYGSIHDPDG-----------VEGVSAR-RFAD 1449 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh------HHHHHHHHHHHHHHHhcCCcch-----------hhhHHHH-hhcC
Confidence 67888889999999999999842221110 0112234444446766665441 1111111 1122
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
| .+..........|++..|..+|++++..+|+....+.+.-...+..|.+...+...+-.....++........--
T Consensus 1450 ~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~ 1525 (2382)
T KOG0890|consen 1450 P----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGV 1525 (2382)
T ss_pred c----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHH
Confidence 3 456666777788999999999999999999988888888888889999998888777666555554333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHh--HHHHHHHHHHHHHhCC--------CcHHHHHHH
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG--IRKGMEKMQRAFEIYP--------YCAMALNYL 274 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~--~~~Al~~~~~al~~~p--------~~~~~~~~l 274 (1093)
.+-|++++++.-..... ..+..+..+.. +|.+......... ..+.+...+..+ +.| .....+..+
T Consensus 1526 eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1526 EAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred HHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHHH
Confidence 45588888877665543 12222222221 4444443322111 112222222111 111 111111111
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCCchhhHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHG--PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPHEFIFPYYGL 348 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~l 348 (1093)
..++.. -+.+ ...+......... ..+...|-+....-....+..+-+-.+++++-.. ........+|+..
T Consensus 1601 ~kLH~l-~el~---~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1601 MKLHLL-LELE---NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHH-HHHH---HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 111110 0001 1111111111111 1122222222222111222333344444444322 1245567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 406 (1093)
|.+....|+++.|...+-.+.+.. -+.+....|..+...|+...|+.++++.+..+
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999988887765 57888899999999999999999999998654
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=2.2 Score=53.20 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=81.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHhcCCCCCchhhHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1093)
-.++...+.|+.|+..|+++....+.....-++.+..|..+..+ | .+++|+.-|.+.- ..+..+.-|++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHHHh
Confidence 45677778888888888888766655555567788888776643 2 4778888887765 55677777999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1093)
.|.+|...|++++-+++|.-+++.+|.++.+-...-.+.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV 596 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 999999999999999999999999998876544433333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.9 Score=49.55 Aligned_cols=268 Identities=15% Similarity=0.092 Sum_probs=148.1
Q ss_pred eEEEeCCCCCCChhHHHHHHH--------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHH
Q 001357 14 EVRVALDQLPRDASDILDILK--------AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85 (1093)
Q Consensus 14 ~v~~~~~~lp~~~~~~~~~l~--------~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 85 (1093)
+|.+-+..|. |+..|++.+. ++.+-+..|-.+|..-...-.++-|...|-+.-. |++. .+
T Consensus 659 ii~~~ikslr-D~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d------Y~Gi-----k~ 726 (1189)
T KOG2041|consen 659 IIEVMIKSLR-DVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD------YAGI-----KL 726 (1189)
T ss_pred EEEEEehhhh-hHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc------ccch-----hH
Confidence 3444444554 4555554432 3445678999999988887777777776666422 3332 22
Q ss_pred HHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH
Q 001357 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVP 163 (1093)
Q Consensus 86 ~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 163 (1093)
.-.|+.++...-+.. ...---|.|++|.++|-.+.+.| ....++...|+|-...++++.--.-+. .-..
T Consensus 727 vkrl~~i~s~~~q~a-ei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~ 797 (1189)
T KOG2041|consen 727 VKRLRTIHSKEQQRA-EISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKED 797 (1189)
T ss_pred HHHhhhhhhHHHHhH-hHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHH
Confidence 223333332211100 00112355668888887665433 123455677888776666654221111 1256
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
++..+|..+..+..+.+|.++|...- ..-++..|++++..+++-.. ....-|++...+-.+|.++..
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCG---------DTENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------chHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHh
Confidence 88888998888999999998887642 12346678888777766433 333457777777788888888
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHH
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1093)
.|. -++|++.|-+. ..|... ...+...+++.+|..+..+.. -|.........+.-+...++.-+
T Consensus 865 vGM---C~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 865 VGM---CDQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred hch---HHHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHH
Confidence 777 66777666432 122211 122334455555655554321 11111222223334455566666
Q ss_pred HHHHHHHH
Q 001357 324 AGLYYMAS 331 (1093)
Q Consensus 324 A~~~~~~a 331 (1093)
|++.++++
T Consensus 929 aIe~~Rka 936 (1189)
T KOG2041|consen 929 AIEKDRKA 936 (1189)
T ss_pred HHHHhhhc
Confidence 66666555
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.12 Score=53.96 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 791 (1093)
+..+-.-|.-|++..+|..|+..|.+.|+.--..++ ...|.+-+-+.+..|++..|+.-+.+++..+|.+..+++.-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 334445577788888888888888888887333333 556667888888888888888888888888888887777777
Q ss_pred HH
Q 001357 792 VA 793 (1093)
Q Consensus 792 ~~ 793 (1093)
.|
T Consensus 161 kc 162 (390)
T KOG0551|consen 161 KC 162 (390)
T ss_pred HH
Confidence 76
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.8 Score=47.60 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=99.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHH
Q 001357 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1093)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (1093)
....|+.-.|-..+..++...|..|......+.+....|.|+.|+..+.-+-..-... ......+-.....+|+++.|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHHH
Confidence 4566889999999999999999999999999999999999999999887665543333 223344556778899999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
..-.-++...-.+++....-+......+- ++++.-.+.+.+.++|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhc
Confidence 99988887766677666555555555555 8999999999999987644
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.086 Score=55.02 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
.+-.-|+-|+...+|..|..+|...|+.... +...|...|.+.+..|+|..|+.-+.+++..+|.. .-.++.-+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhH
Confidence 4455688888888888888888888876433 35667888888888888888888888888888888 666788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q 001357 206 CRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
|++.+.++..|....+..+.++-
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888888766543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.27 Score=49.58 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHH-hcC
Q 001357 355 LGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQ-AFIDLGELL-ISS 423 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~-~~~~la~~~-~~~ 423 (1093)
...+++|+..|.+++.+.+... .++..+..++++++++++-...|.+++.. ..+... ....+.... ...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3477888888888888876543 46777888888889888888888887642 122221 112222222 344
Q ss_pred CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001357 424 DTGAALDAFKTARTLLKKAG-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1093)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1093)
+.+--..+|+..+..+.+.. ......+...+|.+|+..|+|..-...+.+....|....--+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD---------------- 183 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD---------------- 183 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh----------------
Confidence 44444556666555555432 2222345567899999999999988888887765531110000
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh--HHHH----HHHHHHHHHcCCHH
Q 001357 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDAY----LRLAAIAKARNNLQ 576 (1093)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~----~~la~~~~~~g~~~ 576 (1093)
.........++..-...|..+.+...-..+|++++.+.... +... -.=|.++.+.|.++
T Consensus 184 ---------------~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe 248 (440)
T KOG1464|consen 184 ---------------QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFE 248 (440)
T ss_pred ---------------hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHH
Confidence 00112234455555666777777677777777777643221 1111 11123455556666
Q ss_pred HHHHHHHHHHHHc
Q 001357 577 LSIELVNEALKVN 589 (1093)
Q Consensus 577 ~A~~~~~~al~~~ 589 (1093)
+|..-|-.+++..
T Consensus 249 ~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 249 KAHTDFFEAFKNY 261 (440)
T ss_pred HHHhHHHHHHhcc
Confidence 6666665655543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.55 Score=51.27 Aligned_cols=173 Identities=19% Similarity=0.121 Sum_probs=118.3
Q ss_pred HhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhc----cc
Q 001357 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----ND 607 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g 607 (1093)
...+.+..|...+..+-.. ........++.++... .+...|..+|..+ ....++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 3456777777777776542 2236677777777654 4678899999843 445677888899999877 44
Q ss_pred chHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001357 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (1093)
Q Consensus 608 ~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 687 (1093)
+..+|..+|.++......+-..+...++.+ |.... ... .-......|+..|.++.... ++.+...+|.+|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~----~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QAL----AVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhh----cccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 899999999999987654223446677777 65541 000 00134457888888887765 66777778877765
Q ss_pred c----CCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc
Q 001357 688 K----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (1093)
Q Consensus 688 ~----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g 728 (1093)
- .++.+|..+|.++.+.. + ....++++ ++...|
T Consensus 200 G~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 200 GLGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 3 37788888888888865 3 67777888 666555
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.18 Score=56.04 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=107.1
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 001357 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 169 (1093)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~a~~~la 169 (1093)
..++.+|-+.++++.++.++..+|++..|..++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999999998887531 11 12 23566777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1093)
..+.+.|-+..|+++.+-++.++|. ++-.+++.+-....+.++++--+..++........ -+...+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7888899999999999999999998 77777777778888888888777777765542111 12334455555555
Q ss_pred hhhH------------HhHHHHHHHHHHHHHhCCCcH
Q 001357 244 ANEA------------AGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 244 ~~~~------------~~~~~Al~~~~~al~~~p~~~ 268 (1093)
.++. ...+.|-..+.+|+...|.-.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5441 112677777777777776443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.19 E-value=4.1 Score=48.40 Aligned_cols=433 Identities=12% Similarity=0.032 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCChHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF---NRGRYSDSLEFYK 186 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~---~~g~~~~Al~~~~ 186 (1093)
-..=+..+..-+.+++.+....+.+..++...|++++-...-..+....|.++..|+.-..-.. ..+.-..+...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3344566666677788888888888888889998887777777777777888777765544332 2366777778888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKL-------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
+++.-.-. ..+|...+..+... ++++.-+..|.+++..-.....--.. +-
T Consensus 175 kal~dy~~--v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~-------------~w-------- 231 (881)
T KOG0128|consen 175 KALGDYNS--VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAA-------------IW-------- 231 (881)
T ss_pred HHhccccc--chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHH-------------HH--------
Confidence 88764322 23444444444433 45666667777776532211100000 00
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHH--H-HHHhcCCHHHHHHHHHHHHHhc-
Q 001357 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA--R-SYHSKGDYEKAGLYYMASVKEI- 335 (1093)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~- 335 (1093)
..+..+...|...-..++.+.++...+...-........|.... . ......+++.|...+.+.+-.+
T Consensus 232 ---------e~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e 302 (881)
T KOG0128|consen 232 ---------EMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFE 302 (881)
T ss_pred ---------HHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHH
Confidence 00111111111111112333333333322211001111111111 0 1111223333333322222110
Q ss_pred ---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH
Q 001357 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQ 411 (1093)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~l~~~p~~~~ 411 (1093)
...+.....|..+.......|....-...+++++...+.+...|...+...- .++-...+...+-+++...|-...
T Consensus 303 ~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd 382 (881)
T KOG0128|consen 303 RLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD 382 (881)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH
Confidence 0223333446666667777888887788888888777777777776665432 223444555666666666666555
Q ss_pred HHHHHHHHH-hcC-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcchhhhh
Q 001357 412 AFIDLGELL-ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE------FESAHQSFKDALGDGIWLTL 483 (1093)
Q Consensus 412 ~~~~la~~~-~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~ 483 (1093)
+|-..-..+ +.+ ....-...+.+++.. .+..++.........++ ++.-...|+.|...
T Consensus 383 L~~rallAleR~re~~~vI~~~l~~~ls~--------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~e------ 448 (881)
T KOG0128|consen 383 LWKRALLALERNREEITVIVQNLEKDLSM--------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEE------ 448 (881)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH------
Confidence 554433333 222 122222222222221 01111111111122222 22222233333221
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH-HhcCChHHHHHHHHHHHHhcCChHH-H
Q 001357 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLYRLILFKYQDYVD-A 561 (1093)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~-~ 561 (1093)
+...... .-.....++...|.+. ..+++.+.+..++..++...-.... .
T Consensus 449 ------------------------Lt~~~~~-----~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~ 499 (881)
T KOG0128|consen 449 ------------------------LTELYGD-----QLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGK 499 (881)
T ss_pred ------------------------HHHHhhh-----hhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHH
Confidence 0000000 0011233444455553 4567889999998887765544444 6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCC-hhHHHHhhhhhhcccchHHHHHHHH
Q 001357 562 YLRLAAIAKARNNLQLSIELVNEALKVN--GKY-PNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
|+....+-...|+...+..+++.++..- |++ ..++..+-.+....|.++.......
T Consensus 500 Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 500 WLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 7777777777789999988777776543 221 1233333344444455554444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.26 Score=47.18 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF-RSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1093)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1093)
...|......|+...++..+.+++.....+.-..... ..+ ......+... ...++..++..+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~------~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL------YLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3345566677888888888888887543221110000 111 1112222222 3456777888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-cCCCCCH
Q 001357 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-AGEEVPI 448 (1093)
Q Consensus 388 ~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 448 (1093)
..|+++.|+..+.+++..+|.+..++..+..++ ..|+...|+..|.++...+.. .+..+++
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999 999999999999998887764 3444433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.8 Score=43.96 Aligned_cols=200 Identities=13% Similarity=0.137 Sum_probs=126.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcC
Q 001357 389 LGQIEKAQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKG 462 (1093)
Q Consensus 389 ~g~~~~A~~~l~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~la~~~~~~g 462 (1093)
....++|+..|++++.+.+.-. .++-.+..+. ..+++++-+..|.+.+......-.. .+....+++-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3478999999999999987643 3455555666 8999999999999888776653211 12233333333333334
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChH
Q 001357 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542 (1093)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 542 (1093)
+.+.-..+|+..+.. +.+.. ....-..+...+|.+|...+.+.
T Consensus 120 ~m~LLQ~FYeTTL~A---------------------------------LkdAK----NeRLWFKTNtKLgkl~fd~~e~~ 162 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDA---------------------------------LKDAK----NERLWFKTNTKLGKLYFDRGEYT 162 (440)
T ss_pred hhHHHHHHHHHHHHH---------------------------------HHhhh----cceeeeeccchHhhhheeHHHHH
Confidence 444444444443331 00000 00011123345788888888888
Q ss_pred HHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh------HHHHhhhhhh
Q 001357 543 AASVLYRLILFKYQD------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLEL 604 (1093)
Q Consensus 543 ~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~ 604 (1093)
.-..++.++-..+.. ..+.|..-..+|..+.+...-..+|++++.+...-|. +.-.=|.+++
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHl 242 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHL 242 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccc
Confidence 887777776553321 2456666677888888888888889999887644332 2233466788
Q ss_pred cccchHHHHHHHHHhhhcCCC
Q 001357 605 KNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 605 ~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
+.|+|++|..-|-.+.+.++.
T Consensus 243 reg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred ccchHHHHHhHHHHHHhcccc
Confidence 999999999999888886543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.04 Score=48.12 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=81.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCC
Q 001357 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1093)
Q Consensus 46 la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 125 (1093)
.|..++.+|++-+|+++++..+...... . .-.-++..-|.++..++....+...|...+-.++..|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5789999999999999999986442211 0 112355666777877777776777788888889999999999998
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 157 (1093)
..+..++.+|.-+-....|++++.-.++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888777777788888888887765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.27 Score=47.06 Aligned_cols=27 Identities=19% Similarity=0.051 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
...|......|+...++..+.+++.+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly 36 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALY 36 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 334555667788899999999998864
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.061 Score=48.36 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhh
Q 001357 713 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 788 (1093)
.....|+++|++.... +..+.+.+++..++.-+....-..+|+|+..+++.++|+.+++++..+++..|+|+.+.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 5678899999998765 566788999999873222223788999999999999999999999999999999966443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.57 Score=51.54 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h---cCCHHHHHHHHH
Q 001357 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I---SSDTGAALDAFK 433 (1093)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~---~~~~~~A~~~~~ 433 (1093)
.+.-+.+|+++++.+|++...+..+..+..+....++....+++++..+|++...|..+.... . .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999998877755 2 235778888888
Q ss_pred HHHHHHHhcCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 434 TARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 434 ~a~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
+++..+....... ...++..+.....+.|..+.|+..++-.++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888776543221 13566777888889999999999999999864
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=3.8 Score=46.18 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=106.1
Q ss_pred CCCCChhHHHHHHHhcCCChH--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHH
Q 001357 21 QLPRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYT 94 (1093)
Q Consensus 21 ~lp~~~~~~~~~l~~e~~~~~--~~~~la~~y~~~g~~~~a~~~l~~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~ 94 (1093)
++.+|...+..+-.++.-+.. +-+.+...||..|.|++|+...-++-.. +.+.||....+..+.++.....-..
T Consensus 38 eIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y 117 (926)
T COG5116 38 EISDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAY 117 (926)
T ss_pred hhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhh
Confidence 334455555555555566666 7788999999999999999987776431 1222333334455555554443333
Q ss_pred HhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 001357 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVE 172 (1093)
Q Consensus 95 ~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~ 172 (1093)
..|....-... -..+++.+....-.+...-+.+|.... | --+...+.++....+. ...++.++...
T Consensus 118 ~~~~~d~iD~~-------l~~v~e~i~~kc~~~se~~~~lgIa~e--g---~rldiie~~l~~~~d~di~~ylL~Lait~ 185 (926)
T COG5116 118 IGGDKDIIDRI-------LDFVLEVIGAKCVDDSEIGYLLGIAAE--G---LRLDIIEKYLSDGNDCDIINYLLDLAITL 185 (926)
T ss_pred hCCCcccchHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHH--H---HHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 33332111111 112222233222233333344444321 1 1233444555443222 33555666555
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
.....+.. .++...+...|..+..-++.++.|+..+++-..|.+.+++..+.+.
T Consensus 186 v~~~~fr~--~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 186 VEEEGFRK--EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hhhHHHHH--HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 44433332 4566667777666434467788999999999999999999877543
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.004 Score=64.95 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
++.|+..|..++.++|.....+..++.+++..++...|+..|..++.++|+....+-..+.....+|++.+|...+..++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhC
Q 001357 190 QVH 192 (1093)
Q Consensus 190 ~~~ 192 (1093)
+++
T Consensus 210 kld 212 (377)
T KOG1308|consen 210 KLD 212 (377)
T ss_pred hcc
Confidence 544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=48.70 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 178 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~ 178 (1093)
...+..|...+..+... .++...+.++.+|... .+..+|...|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 34556778887777652 2336677777777655 35788999988544 44577888888888877 4588
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhH
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1093)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++-... ++.+...+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 999999999988754431233566777776642 2336777777776654 677777777666553 323347
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
.+|+..|.++..... ....+.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 888888888877665 66666666 555555
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.013 Score=39.32 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 753 l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
++.+|.++...|++++|..+|++++..+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444443
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=5 Score=46.95 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhC-CC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCch--hHHHHHHHHHHHhcCH
Q 001357 655 THLEKAKELYTRVIVQH-TS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP--DVWINLAHVYFAQGNF 730 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~-p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--~~~~~lg~~~~~~g~~ 730 (1093)
|+.+.|-.+.++++.-. |- -..-.+.++..|+-.|+...-..++.-++. +++ ++. .+...+|.+++ .++
T Consensus 515 grqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~n----DDVrRaAVialGFVl~--~dp 587 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVN----DDVRRAAVIALGFVLF--RDP 587 (929)
T ss_pred hhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccc----hHHHHHHHHHheeeEe--cCh
Confidence 55556666666655422 11 112234555556656655443333333222 111 111 12223333333 244
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHH
Q 001357 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQKF 797 (1093)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~ 797 (1093)
+.-....+-..+.|...-...+-..||.+|.-.|. .+|+.+++-+.. +|.+ ..+...+|+++-++
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhc
Confidence 44444433322221100012333456666666665 456777766655 5554 23444555554443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0045 Score=64.56 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=80.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
.+.-.+..|.++.|+..|..++.++|.+...+...+.+++.+++...|+..|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556777889999999999999999999999999999999999999999999999999988 55566788888889999
Q ss_pred HHHHHHHHHHHhhCCC
Q 001357 214 GKARQAFQRALQLDPE 229 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~ 229 (1093)
.+|...|..+.+++-+
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999988887643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.021 Score=38.28 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 746 (1093)
++++++|.+|...|++++|+..|+.++..||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47899999999999999999999999999875
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.14 Score=48.34 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..++....+.+..++.+.+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3556666777778888888888888888888888888888888888999999999888887777777 666777888888
Q ss_pred HcCCHH
Q 001357 209 KLGQLG 214 (1093)
Q Consensus 209 ~~g~~~ 214 (1093)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 887754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.016 Score=39.89 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+|.+||.+|..+|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777776544
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.5 Score=43.35 Aligned_cols=177 Identities=13% Similarity=0.077 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHH
Q 001357 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (1093)
Q Consensus 449 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 528 (1093)
.+-..++.++++.|.|.+|+......+..-. ..+..+....++
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vh 168 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVH 168 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehh
Confidence 3445678889999999999998877665210 011345566677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-----hcCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHc---CCChhHHHH
Q 001357 529 FNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVN---GKYPNALSM 598 (1093)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 598 (1093)
..-..+|....+..++...+..+-. -+|....+-.- -|..++.-.+|..|..+|-++++-. ..+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Confidence 7777888888887777776665543 23443333322 2344566678899999998887754 223333332
Q ss_pred hhhhh---hcccchHHHHHHHH--HhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC
Q 001357 599 LGDLE---LKNDDWVKAKETFR--AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (1093)
Q Consensus 599 l~~~~---~~~g~~~~A~~~~~--~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (1093)
+-.+. ...+..++....+. ..++........+....+.. |... . ..++..|+.-|..-+..+|-
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea-~~NR--s--------L~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA-FGNR--S--------LKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH-hCCC--c--------HhhHHHHHHHhhHHhccCHH
Confidence 22221 12233333333222 22222223334444444433 2211 1 16777788777777665553
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.022 Score=38.55 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
+++.+|.++..+|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666555
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.023 Score=38.40 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
+++.+|.+|...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555555
|
... |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.34 Score=56.02 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001357 889 ALAEEARRKAEEQK 902 (1093)
Q Consensus 889 ~~~~~~~~~~~~~~ 902 (1093)
+++++++|++++++
T Consensus 243 ~eeEEer~~ee~E~ 256 (1064)
T KOG1144|consen 243 REEEEERRREEEEA 256 (1064)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=6.3 Score=44.75 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
...+.+.......|.++...+..+..+...|+.+.|+..+...+. +. ....++.+|.++.-+.+|..|-..+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444555555566777777777778888778887777777776665 21 134567777777778888888888877
Q ss_pred HHHhCCCChHHHHHHHHHHHH
Q 001357 188 ALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~ 208 (1093)
+...+.-+.....+..|.|++
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHh
Confidence 777665553333333444443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.065 Score=40.31 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
..++++|.++++.|++.+|..+.+.++++.|+|..+.-....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 468899999999999999999999999999999665444333
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.23 Score=43.54 Aligned_cols=103 Identities=22% Similarity=0.170 Sum_probs=52.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
|.-++..|++-+|+++.+.++..++++.. .++...|.++..+. ......+....+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y----------- 59 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY----------- 59 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH-----------
Confidence 45566666666666666666666655521 33444444443322 111111111111
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 001357 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1093)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1093)
...+++.|.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 60 ---Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 ---LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 223445555556666666666666666655556666666666665543
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=7.7 Score=44.07 Aligned_cols=254 Identities=16% Similarity=0.107 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1093)
....+.+.......|+++......+..+...|+.+.|+..++..+. ..........++.+|.++..+.+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445555666677788888888888888888887777777776654 111112234566677777777888888888877
Q ss_pred HHHhcCCCCCchhh-HH-HHHHHHHH--------cCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001357 331 SVKEINKPHEFIFP-YY-GLGQVQLK--------LGDFRSALTNFEKVL---EIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 331 al~~~~~~~~~~~~-~~-~la~~~~~--------~g~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1093)
..+. .+...+ |. ..|.+++. .|+-+.|..+++... ...|.+..+-.. -..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHH
Confidence 7652 111122 21 22233321 223333333333222 111211111000 0011111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 001357 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 398 ~l~~~l~~~p~~~~--~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
+-.+.- +++..+. .++.++.++ ......+.. -+... -..+... ..+. -.+..+|.++...|+...|..+
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~-~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAE-LENPKID-DSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHH-HhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111110 1111222 234555544 222222222 11111 1112222 2222 3445679999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVLYR 549 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 549 (1093)
|...+.... .......-.+.++|.+|.++...|. ..++..++.
T Consensus 472 f~i~~~~e~------------------------------------~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~ 515 (546)
T KOG3783|consen 472 FKIQVEKES------------------------------------KRTEDLWAVPFALYELALLYWDLGGGLKEARALLL 515 (546)
T ss_pred HHHHHHHHH------------------------------------hhccccccccHHHHHHHHHHHhcccChHHHHHHHH
Confidence 998876310 0001233466789999999999988 899999998
Q ss_pred HHHHhcCCh
Q 001357 550 LILFKYQDY 558 (1093)
Q Consensus 550 ~~l~~~p~~ 558 (1093)
++-....++
T Consensus 516 kAr~~~~dY 524 (546)
T KOG3783|consen 516 KAREYASDY 524 (546)
T ss_pred HHHhhcccc
Confidence 887765443
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.7 Score=49.18 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhc------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C------------
Q 001357 108 EHFILATQYYNKASRI------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-----D------------ 158 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~------------ 158 (1093)
.-|++|...|.-+... +|.+...++.++.++..+|+.+-|..+..++|-. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666666655433 4667788999999999999988888877776521 1
Q ss_pred ----CCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHH-----Hh
Q 001357 159 ----RDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQ 225 (1093)
Q Consensus 159 ----p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----l~ 225 (1093)
|.|- .+++.....+.+.|-+..|+.+++-++.++|. ++..+.+.+-...++..+|.--+..++.. +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 2222 23444555667789999999999999999998 65555565556666667777666666655 22
Q ss_pred hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
.-| |...-+.+|..+........-..|...+.+|+...|.
T Consensus 412 ~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 334 3344456666666665544466788888888888764
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=5.7 Score=42.11 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHH----hC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC---CCC-ch
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFE----IY--PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPT-KS 305 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~-~~ 305 (1093)
.+..+|...++ |.+|+......+. ++ +.-..+...-...|+...+..+|...+..+....+. +|. .+
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 45556666665 7777766554433 22 122334444456677777777766666555533221 111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh---HHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCcHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETLK 380 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~ 380 (1093)
..-..-|..+....+|..|..+|-.+.+.+..-.+.+.+ +-.+..+-+..+..++.-.++ ..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 222233555666677888888888887755433332333 223334444555555544443 334454555667777
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 001357 381 ALGHIYVQL--GQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~l~~~l~~~p 407 (1093)
.++.++... .+|+.|+.-|..=+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 777776554 366777777766655444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.73 Score=43.63 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 001357 655 THLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 732 (1093)
+..++|+..|..+-..+-.+ +.+....+.+..+.|+...|+..|..+-...|-+.. ....+...-+.++...|-|+.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-GRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHHHhccccHHH
Confidence 67788888888776655443 445667788999999999999999999876642211 112344556778889999988
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 001357 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 733 A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
-....+..... .++-....-..||.+-++.|++..|.+.|..+..
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77775553321 1222266777899999999999999999998877
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.28 Score=42.07 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCC
Q 001357 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1093)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~ 212 (1093)
+..++..+..+|+++.+.+.+|..+...|++++|+..+-.+++.++.. ....+-.+-.++-.+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345566666677777777777777777777777777777776666554 23334444444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.36 Score=45.69 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHH
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY-KRAL 189 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~-~~al 189 (1093)
..+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|..+.+--.++.|++..|+.. ...| ..++
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evl 104 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS--WRRYADEVL 104 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH--HHHHHHHHH
Confidence 388888888888899999999999999999999999999999999999999999999999999998864 2333 3344
Q ss_pred HhCCC
Q 001357 190 QVHPS 194 (1093)
Q Consensus 190 ~~~p~ 194 (1093)
...++
T Consensus 105 e~~~d 109 (160)
T PF09613_consen 105 ESGAD 109 (160)
T ss_pred hcCCC
Confidence 44443
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.27 Score=50.10 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHH-------HHHhhcCCC----CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 713 MPDVWINLAHVYFAQGNFALAMKMYQN-------CLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g~~~~A~~~~~~-------al~~~~~~~----~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
.+.++..+||+|..+|+......++++ ++.....+. ...+++.+|.+.++.|++++|+++|.+++...-
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 456777888888888885544444444 444322222 167888899999999999999999999887654
Q ss_pred CC
Q 001357 782 SN 783 (1093)
Q Consensus 782 ~~ 783 (1093)
.+
T Consensus 197 ~s 198 (214)
T PF09986_consen 197 AS 198 (214)
T ss_pred CC
Confidence 33
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.14 Score=38.54 Aligned_cols=42 Identities=21% Similarity=0.069 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1093)
.++.+|..+++.|+|.+|..+++.+++..|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456677777777777777777777777777777666554443
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.76 E-value=6.8 Score=41.59 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=156.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEA--DRDN--------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
+.++.......+++++...|..++.. .|.+ ....+.++.++.+.|++.+-..+....-.. +.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf--------~~ 79 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPF--------LS 79 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH--------HH
Confidence 55666666777778888888887763 2222 245667777777777776655544433211 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
.++. ..|....+..+...+ ++...-..+..-...-. -.+-..++++. .-..++.+|
T Consensus 80 ~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA----~~ekRtFLRq~---------Learli~Ly 138 (411)
T KOG1463|consen 80 SVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWA----KREKRTFLRQS---------LEARLIRLY 138 (411)
T ss_pred Hhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHH----HHHhHHHHHHH---------HHHHHHHHH
Confidence 1111 122222222222222 22211111111000000 01111222222 224578899
Q ss_pred HHcCChHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---CCCCc-hhhHHHHHHH
Q 001357 279 FFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEF-IFPYYGLGQV 351 (1093)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~-~~~~~~la~~ 351 (1093)
+..++|.+|+.+....++. .++.+...+++..-..+|+...+..+|...+..+....+ -+|.. ...=+.-|.+
T Consensus 139 ~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl 218 (411)
T KOG1463|consen 139 NDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL 218 (411)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce
Confidence 9999999999998887743 333445566777778889999999999988887764321 11111 1111223555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH---
Q 001357 352 QLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL--- 420 (1093)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~--~~l~~~p~~~~~~~~la~~~--- 420 (1093)
+....+|.-|..+|-.+++-+. .-..++..+..|-...+..++...++. .+++....+..+....+..+
T Consensus 219 ha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR 298 (411)
T KOG1463|consen 219 HAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR 298 (411)
T ss_pred eecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC
Confidence 6666899999999999887542 123455556666667777776655553 34555666788888888888
Q ss_pred hcCCHHHHHHHHHHHH
Q 001357 421 ISSDTGAALDAFKTAR 436 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~ 436 (1093)
...+|..|+.-|..-+
T Consensus 299 SLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 299 SLKDFEKALADYKKEL 314 (411)
T ss_pred cHHHHHHHHHHhHHHH
Confidence 3346666666665433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=3.8 Score=39.00 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=73.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRY 208 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~~ 208 (1093)
.+.-+.+.+..++|+..|..+-+..-.+ ..+.+..|.+....|+-..|+..|..+-...|.. ....++.-+.++.
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3444455667777777777665544333 3455666777777777777777777766554332 1234556666666
Q ss_pred HcCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001357 209 KLGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1093)
..|-|+.-....+.+- ..+|-...+.-.||...++.|+ +..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 6776666555444322 1233344555566666666666 6666666665544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.19 Score=51.65 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1093)
+|..++|..+|..++.+.|.++.++...|...-..++.-+|-.+|-+++..+|.|..++...+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 444445555555555555555555555555555555555555555555555555555554444
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.18 E-value=7.9 Score=39.94 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh---ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhH-
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPY- 345 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~- 345 (1093)
..++.+++..|.|.+|+.+....+. ..+..+.....+..-..+|+...+..++...+..+..... -.|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567888999999999998887763 3344455667777778888888888888877766654221 112222222
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHH---HHHHHHHcCCHHHHHHHHHH--HHH-hCCCCHHHHHH
Q 001357 346 -YGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKA---LGHIYVQLGQIEKAQELLRK--AAK-IDPRDAQAFID 415 (1093)
Q Consensus 346 -~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~---la~~~~~~g~~~~A~~~l~~--~l~-~~p~~~~~~~~ 415 (1093)
+.-|...+...+|.-|..+|-.+++-.. .+..++.. +...-...+..++...++.. .++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 2234555667789999999988887542 23333222 22222333444544444332 122 23445666666
Q ss_pred HHHHH---hcCCHHHHHHHHHH
Q 001357 416 LGELL---ISSDTGAALDAFKT 434 (1093)
Q Consensus 416 la~~~---~~~~~~~A~~~~~~ 434 (1093)
.+..+ ...++..|+.-|..
T Consensus 289 vaea~~NRsL~df~~aL~qY~~ 310 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSD 310 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhH
Confidence 77777 33456666665544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.43 Score=50.38 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=31.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|+..++..+...|++
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 3344445555555555555555555555555555555555555555555555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.97 E-value=1.6 Score=40.67 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.++......+..++++++..++..+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHh
Confidence 344445555568888888888888888889888888888889999999999999998888877776 5566778888888
Q ss_pred cCCHH
Q 001357 210 LGQLG 214 (1093)
Q Consensus 210 ~g~~~ 214 (1093)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 87653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.88 E-value=6.9 Score=43.26 Aligned_cols=201 Identities=14% Similarity=0.010 Sum_probs=134.9
Q ss_pred HHHHHHcCC-ChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 583 NEALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 583 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
+..+..++. +.+....-|.+-+-.|+..++...+..+....-......++.|........ .+...|+
T Consensus 101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al 168 (421)
T PRK12798 101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATAL 168 (421)
T ss_pred HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHH
Confidence 333444432 444555666667778999999888887655443334444544444322333 7789999
Q ss_pred HHHHHHHhhCCCCH--HHHH-HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 001357 662 ELYTRVIVQHTSNL--YAAN-GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1093)
Q Consensus 662 ~~~~~~l~~~p~~~--~a~~-~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 738 (1093)
.+|+.+-=.-|... .+.. .-..+....|+.+++..+-.+.+..+..|+|..+-.-.|..+.+-+. .+. -...+.
T Consensus 169 ~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~-d~~--~~~~l~ 245 (421)
T PRK12798 169 KLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD-DEI--RDARLV 245 (421)
T ss_pred HHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc-ccc--cHHHHH
Confidence 99999988888843 2333 33445578899999999999999999888776654444444444333 222 223367
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Q 001357 739 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (1093)
Q Consensus 739 ~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~ 799 (1093)
.++..+.......+|..+++.-.-.|+.+-|.-.-.+++.+... ...-...+.+|+..+.
T Consensus 246 ~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~ 305 (421)
T PRK12798 246 EILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGAAL 305 (421)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHc
Confidence 77777644444789999999999999999999999999999844 4445555666665544
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.87 E-value=8.1 Score=44.08 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=108.3
Q ss_pred cCChHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----------------
Q 001357 538 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 589 (1093)
Q Consensus 538 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 589 (1093)
..-|++|...|.-+... +|-.++.++.++.++..+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34556666666655543 45568899999999999999988887777765421
Q ss_pred -----CCChh---HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 590 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 590 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
|.+-. +++.....+.+.|-|..|..+.+-++++.|..|+++...+.++ |...+ .+|.--+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2333444556778999999999999999999899988888888 54431 6666666
Q ss_pred HHHHHH-----HhhCCCCHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHhc
Q 001357 662 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 662 ~~~~~~-----l~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 706 (1093)
.+++.. +..-|+-.+. ..+|..|.+... -..|+..+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666655 4445654433 356666666554 5788888999988776
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.37 Score=47.61 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
.++..+|.+|...|+++.|++.|.++...........+.++.+.++.+..+++..+..++.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555666666666666666666665554444444455566666666666666666666555554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.51 Score=40.42 Aligned_cols=66 Identities=18% Similarity=0.060 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCh
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRY 178 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~ 178 (1093)
.+..+...+..+|.+..+.+.+|..++..|+++.|+..|-.++..+++. ..+...+..++-..|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4667788889999999999999999999999999999999999988765 44555555555444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.12 Score=35.38 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKI 153 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~ 153 (1093)
|..+|.+|...|+|++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.1 Score=40.68 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 161 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g---~~~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
.....+.+|.++.+.. +..+.+.+++.+++ -.|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4556777777777664 45677888888886 5666666677778888888888888888888888888888877554
Q ss_pred HHH
Q 001357 237 LAV 239 (1093)
Q Consensus 237 la~ 239 (1093)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 433
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.7 Score=48.78 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
..++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|...++..+...|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999999999988776555544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.27 Score=50.59 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=47.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.-..+.|+.++|..+|+.++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.|..++.+.+.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33456677777777777777777777 5666777777766677777777777777777777777666553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.66 Score=45.81 Aligned_cols=104 Identities=10% Similarity=0.179 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HH
Q 001357 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (1093)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (1093)
.++..+|..|.+.|+++.|+..|.++.+...++. ...++++++..+.+..|++.....+..++-.......+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678899999999999999999999988653221 35678888899999999999999999998877655444 23
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
+-.+-|..+...+++..|.+.|-.+..-..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 444667788889999999999877765544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=24 Score=42.78 Aligned_cols=215 Identities=9% Similarity=-0.067 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~ 421 (1093)
..++..-....+.+.|...+........-+. .++..+|.-....+...+|...+..+.....+....-..+-..+.
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~ 324 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHH
Confidence 3344445566778889988887655443222 234444444444433667777777655433222222222222237
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
.+++......+..+.... .......+-+|..+...|+.++|..+|..+......... +.
T Consensus 325 ~~dw~~~~~~i~~L~~~~-----~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~----------------LA 383 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEA-----KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPM----------------VA 383 (644)
T ss_pred ccCHHHHHHHHHhcCHhh-----ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHH----------------HH
Confidence 788887766666532221 124678888999989999999999999998552110000 00
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
...++.--.+....................+..+...|....|...+..++.. . +......++.+....|.++.++..
T Consensus 384 a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 384 AQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000000000000000000000112344566667777777777777766654 2 244556666667777777766655
Q ss_pred HH
Q 001357 582 VN 583 (1093)
Q Consensus 582 ~~ 583 (1093)
..
T Consensus 462 ~~ 463 (644)
T PRK11619 462 TI 463 (644)
T ss_pred Hh
Confidence 43
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.32 E-value=12 Score=39.33 Aligned_cols=199 Identities=15% Similarity=0.084 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.+-...++..+...-++.-..+++++|....+++.|+.-.... +.+|..+|+++++...... .-......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~y----r~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIY----RQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHH----hhHHHHhh
Confidence 44556667777888888888889999999999999888654444 6778888888776532111 11111111
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1093)
.|...+|. .+ .+......+-..++.|..++|+..+|++.++...+.++. ......+-++...+....-|..
T Consensus 259 ~~~~~da~------~r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQ------LR--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhh------hh--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 00 001112234456788888999999999999888764321 1112233445555555544444
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHH-------------cCC---HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 361 ALTNFEKVLEI-YPDNCETLKALGHIYVQ-------------LGQ---IEKAQELLRKAAKIDPRDAQAFIDLG 417 (1093)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~~-------------~g~---~~~A~~~l~~~l~~~p~~~~~~~~la 417 (1093)
...++-+.-.+ -|......+.-+.+-.+ .|- -..|++.+.++++.+|..+..+..+-
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 44433333222 13333333322222111 111 12456666666666766665554443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=17 Score=41.90 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRL 550 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1093)
.+++..|+.+....++++|.+.|.+
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHH
Confidence 4555555555555566655554443
|
|
| >PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.0024 Score=48.38 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-----hhcChh
Q 001357 910 KLEDEQKRLRQQEEHFQRVKEQW-----RSSTPA 938 (1093)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~w-----~~~~~~ 938 (1093)
++.+..++|+.++++..+||||| ||+|+|
T Consensus 26 kkkRk~rlPK~~dp~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPGKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhcccCCCCCCCCCCCCCCccccCchhhhcccCC
Confidence 34455569999999999999999 898875
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=92.77 E-value=15 Score=38.89 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=66.7
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
..++..+..+|..+.+.|++.+|..+|-. .++...... +.......| .|.....+...
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~-----~~~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~R 146 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLL-----GTDPSAFAYVMLLEEWSTKG---------------YPSEADLFIAR 146 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHT-----S-HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHh-----cCChhHHHHHHHHHHHHHhc---------------CCcchhHHHHH
Confidence 35788999999999999999988877643 222222211 222222222 33444444444
Q ss_pred hh-hhhcccchHHHHHHHHHhhhc----CCC--------CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 001357 600 GD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (1093)
Q Consensus 600 ~~-~~~~~g~~~~A~~~~~~~l~~----~~~--------~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (1093)
+. -|+..++...|...+...++. .|. +..+.+++...+ ...+..... ...+..-.+.|..
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~~ 219 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYKP 219 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhCc
Confidence 33 356667888887777665544 221 112233333333 222211110 1345555555666
Q ss_pred HHhhCCCCHHHHHHHHHHHHh
Q 001357 667 VIVQHTSNLYAANGAGVVLAE 687 (1093)
Q Consensus 667 ~l~~~p~~~~a~~~la~~~~~ 687 (1093)
.|+.+|.-...+..+|.+|..
T Consensus 220 ~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 220 SLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp ---HHHHTHHHHHHHHHHHH-
T ss_pred cccccHHHHHHHHHHHHHHCC
Confidence 666666666666667776664
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.2 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001357 854 VEYCKHLLDAAKIHREAAEREEQ 876 (1093)
Q Consensus 854 ~~~~~~l~~~~~~~~~~~~~~e~ 876 (1093)
+.....+|.+-+...+++++.++
T Consensus 216 v~~~qe~La~~qe~eE~qkreeE 238 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEE 238 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.5 Score=44.74 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001357 423 SDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1093)
..++.|+..|.-|+-...-.+... .+.++..+|++|...|+.+....++++|+.....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~-------------------- 150 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE-------------------- 150 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH--------------------
Confidence 345556665555554433222222 2567778888888888876666666666552110
Q ss_pred HhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001357 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1093)
Q Consensus 501 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1093)
.+.. .......-+...+.+.+|.+..+.|++++|..+|.+++..
T Consensus 151 ---------a~~~-e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 151 ---------AYEN-EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred ---------HHHh-CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 0000 0000012235678888899999999999999999988864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=9 Score=44.06 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEA-------------DRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
-|-.+|...+..=+++-|.+.|.++-.. .....+--+.+|.++.-.|+|.+|.++|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3666676666666777777777665221 011112234456666666777777766654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.3 Score=41.16 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1093)
.++..++.-+--+.|+.+..-+.-|.++...|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+..
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 378888888888899999999999999999999999999999999888888999999999999998754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=92.34 E-value=3.9 Score=36.20 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhcCCCCC---C----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC----CCC-
Q 001357 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFV---Q----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD- 749 (1093)
Q Consensus 682 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~- 749 (1093)
|.-....|.+.+|...+.++.+....-+.. + +.-++-.|+..+..+|+|++++..-..+|..|.. ..+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 333445677788888888777765321100 1 2334556677788999999999999999988743 223
Q ss_pred ----HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 750 ----AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 750 ----~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
..+.+.-+.++...|+.++|++.|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344556788888999999999999887653
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.24 Score=32.26 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+++.+|.++...|+++.|...|..++...|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555556666666666666666655555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.22 E-value=21 Score=39.25 Aligned_cols=339 Identities=13% Similarity=0.018 Sum_probs=162.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHh--CCCChHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQAC-VEFNRGRYSDSLEFYKRALQV--HPSCPGAI 199 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~-~~~~~g~~~~Al~~~~~al~~--~p~~~~~~ 199 (1093)
-|.-+..+..+..-+++--..+.|..+|+..-.... -+..++.++.. .-+..| .++...++.. .|+. ..
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pnl--~T 275 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPNL--FT 275 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCch--Hh
Confidence 355555555444444444778899999988754332 23344443322 233333 5566666554 4654 66
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH---------hC
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQ------LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE---------IY 264 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~---------~~ 264 (1093)
+..+-.|..+.|+++.|+..+.+++. .+|.-.. ++.+.....+.+++ ...+...+..... +.
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS-yh~iik~f~re~dp--~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS-YHLIIKNFKRESDP--QKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHhcccCCc--hhhhHHHHHHHHHhhccCcccCCC
Confidence 78888999999999999998887764 3564443 33333444444441 2234444433332 23
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC---CCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---HGPTK--SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1093)
|.+...+.....++....+.+-|.++..-.-...+ ..+.. ...+..+-.+.++....+.-+..|..++-..-.+.
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 55544444444555577777776666544332111 01111 11222333444555566666677766653211111
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCcH---HHHHHHHHHHHHcCCHHHH
Q 001357 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI---------------------YPDNC---ETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------------------~p~~~---~~~~~la~~~~~~g~~~~A 395 (1093)
.... ..+-.+.--.|.++---.++...... +|..+ ..-...+.|... +.++
T Consensus 433 ~~~m--~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad---~~e~ 507 (625)
T KOG4422|consen 433 SQTM--IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD---IKEA 507 (625)
T ss_pred chhH--HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH---HHHH
Confidence 1111 11111222222222222222111111 12111 111111111110 1111
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
.+.-..-+....-.+.....++.++ +.|.+++|.+.+.-..+............++..+.......+...+|+.+++-+
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111111111122345556666677 888999888877665432222212222344445556666778888888888888
Q ss_pred Hhc
Q 001357 475 LGD 477 (1093)
Q Consensus 475 l~~ 477 (1093)
+..
T Consensus 588 ~~~ 590 (625)
T KOG4422|consen 588 SAF 590 (625)
T ss_pred HHc
Confidence 663
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.24 Score=32.31 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+++++|.++...|++..|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4455555555555555555555555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=91.99 E-value=7.7 Score=34.44 Aligned_cols=97 Identities=16% Similarity=0.066 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEV-------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 493 (1093)
..|-+++|...+.+++.+....+... +..++..|+..+..+|+|++++..-..++.--
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF--------------- 85 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF--------------- 85 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH---------------
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH---------------
Confidence 45667777777777776655443221 13455667778888899888888777776521
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCc----hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001357 494 DASASMLQFKDMQLFHRFENDGNHVELPWN----KVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1093)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1093)
.+--+ ++.+ -+.+.++.+..+...|+.++|+..|+.+.+
T Consensus 86 ---------------NRRGE------L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 ---------------NRRGE------LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ---------------HHH--------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hhccc------cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 11111 1111 345667788889999999999999887654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.89 E-value=35 Score=41.08 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=96.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1093)
..+++....|.-|+.+.+.-- .............|..++..|++++|...|-+.+..+ .|..+ ..-+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~V------i~kfLd 409 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEV------IKKFLD 409 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHH------HHHhcC
Confidence 345566666777776665322 1112334667778999999999999999999888532 12221 122233
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~ 434 (1093)
.....+-..+++.+.+..-.+..--..|..||.++++.++-.++..+.- ...-..+.-..+-.++..+-.+.|.-...+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4445555666666666544455556677789999998877655544321 000000111111112233333333322211
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
. .. .. ..+-.++...|+|++|+.++..+
T Consensus 489 ~-------~~--he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 F-------KK--HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred h-------cc--CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 1 11 11 22345567789999999998653
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=19 Score=38.07 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (1093)
-+.+.....+..+..+-++....+++++|..+.+|..|+.-- ..-..+|..+++++++..
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 334444455555566666666666666666666666555422 123445556666655543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.43 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=27.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001357 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1093)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a 66 (1093)
.++.-+|..+...|++.|++++|.++|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356779999999999999999999999875
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.4 Score=38.19 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=46.9
Q ss_pred HhcCCchhHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHH
Q 001357 686 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 751 (1093)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 751 (1093)
.+.|++..|++.+.+..+....+.... ...++.++|.++...|++++|+..++.++.......|..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~ 78 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR 78 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH
Confidence 367888888888888877664432211 245667788888888888888888888888776666633
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.55 Score=48.58 Aligned_cols=88 Identities=10% Similarity=0.158 Sum_probs=63.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 152 ~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.+.....|+++..|...+....+.|-|.+--.+|.+++..+|.+ .++|.. .+.-+.-.++++.++..|.+++.++|++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 34444567777777777777777777888888888888888887 555544 5556667788888888888888888888
Q ss_pred HHHHHHHHHH
Q 001357 231 VEALVALAVM 240 (1093)
Q Consensus 231 ~~a~~~la~~ 240 (1093)
+..|...-.+
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 8777655443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.51 Score=46.80 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
...|+.+.|.++|.+++...|.+...|+.+|....+.|+++.|...|+++++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555666666666556555566666655555666666666666666665555
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.74 Score=51.19 Aligned_cols=94 Identities=19% Similarity=0.111 Sum_probs=55.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
|.-.+..+.+..|+..|.+++...|.....+...|.++.+. |+.-.|+.-...+++++|.. ..+++.|+.++..++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELT 459 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHh
Confidence 33333444455666666666666666666666666666554 34445555555666666665 455666666666666
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 001357 212 QLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~ 229 (1093)
++.+|+.....+....|.
T Consensus 460 r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPT 477 (758)
T ss_pred hHHHhhhhHHHHhhcCch
Confidence 666666666555555553
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=90.18 E-value=1.3 Score=36.12 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001357 719 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 775 (1093)
Q Consensus 719 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~~ 775 (1093)
.-|.-++.+.+..+|+..+++++++.+.+++ ..++-+|..+|...|++.+++.+...
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778899999999999998776666 67778899999999999998777544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.49 Score=46.90 Aligned_cols=61 Identities=28% Similarity=0.451 Sum_probs=48.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
......++.+.|.++|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556778888888888888888887 66688888888888888888888888888888653
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.91 E-value=23 Score=38.98 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAK------------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 177 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~- 177 (1093)
..++.+=.+.+..+|....+|..+-.++... .-++.-+.+...++..+|++..+|..+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 3677777788888898887776654333222 235666777888899999999999999999987764
Q ss_pred -hHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh------hh-
Q 001357 178 -YSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 246 (1093)
Q Consensus 178 -~~~Al~~~~~al~~~p~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 246 (1093)
+..=+.+++++++.+|.+--...+..-.+-. ......+=+.+..+++..++.|..+|.....+.... |+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 5788999999999999883333332222222 222355566778888888999999998877766532 21
Q ss_pred --HHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 247 --AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 247 --~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
..-...-+.....++-.+|.+..+|.+
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 122455666777777788888877765
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.83 E-value=12 Score=42.92 Aligned_cols=102 Identities=17% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCcHHHHHHH------HHHH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVAL------AVMD 241 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~l------a~~~ 241 (1093)
...+...+....+.-.+..++..+|.+ ...+..++......|..-.+...+.. +....|.+......+ +...
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 333334444444444444455555444 23334444444444444333333333 444444444433333 2222
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
...+. ..++...+.++....|.++.+...+
T Consensus 153 ~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 153 KLLGR---TAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHhcc---HHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 22333 3444444444445555544444333
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.65 E-value=5.5 Score=45.59 Aligned_cols=128 Identities=23% Similarity=0.142 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-AL 189 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-al 189 (1093)
++..+...+.++|.++..+... ...+...+....+.-.+...+..+|++..+...++......|....++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5556666667888888775544 66777778888999999999999999999999999998888877777666655 77
Q ss_pred HhCCCChHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 190 QVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 190 ~~~p~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
...|.+... .++.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777877221 123358888889999999999999999999986665555444
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=89.42 E-value=7.6 Score=42.41 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 168 QACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~--------p~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
-|..++++++|..|..-|..+|.+. |.. ...+.-.+..||+++++.+.|+....+.+.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3445556666666655555555542 111 12334567888889999999998888888888888
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001357 231 VEALVALAVMDLQANEAAGIRKGMEK 256 (1093)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~ 256 (1093)
..-++..|.+...... |.+|-..
T Consensus 262 frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHH
Confidence 8888777877777666 5555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.11 E-value=45 Score=37.78 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
.|-+-.++..+..++.....+.--..++.+++....+- ..++.++.||... ..+.-...|++.++.+-+++..-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34455556666666655556666666777777765543 4567777777777 45666677777777777777766677
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
+..|.. ++ ...+..+|.+++..
T Consensus 139 a~~yEk-ik---~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IK---KSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hc---hhhHHHHHHHHHHH
Confidence 766665 34 56667777766543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.76 Score=32.47 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 744 (1093)
.++.++|.+|..+|++.+|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788888888888888888888887753
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.8 Score=47.47 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
.|.++...-|+++..|...+......|-|.+--..|.++++.+|.|+..|.. -+.-++..++++.+..+|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444555668999999999988889999999999999999999999999977 566678889999999999999999999
Q ss_pred ChHHHHH
Q 001357 195 CPGAIRL 201 (1093)
Q Consensus 195 ~~~~~~~ 201 (1093)
+ +.+|+
T Consensus 175 ~-p~iw~ 180 (435)
T COG5191 175 S-PRIWI 180 (435)
T ss_pred C-chHHH
Confidence 9 55554
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.63 E-value=6.3 Score=46.07 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001357 875 EQQNRQRQEAARQAA 889 (1093)
Q Consensus 875 e~~~~~~~~~~~~~~ 889 (1093)
++++|.++|..|+.+
T Consensus 356 ekkererqEqErk~q 370 (1118)
T KOG1029|consen 356 EKKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=88.22 E-value=1.2 Score=33.23 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=34.8
Q ss_pred hhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhH
Q 001357 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 637 (1093)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~ 637 (1093)
..+|..+...+.+.|++++|.++|+++.+..-.++.+++..+.+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456777788888888888888888888887777777777766555
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.15 E-value=45 Score=36.63 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCCchhh
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFP 344 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ 344 (1093)
..|+.+...|-..|+......++...+.. .......+...+.+-+.|...+.|+.|-.+..+..- ....+...+..
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 34555555566666655555554444432 122334455666777888888888888777766541 00011233445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1093)
.+.+|.+..-.++|..|.++|-.++...|.+
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 6678888888888888999888888888863
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.93 E-value=5.5 Score=32.58 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
.+.-|.-++...+..+|+..|.++++..++....+..||.+.....+.|.+.+.+.+...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888888888888888888777777777665555555557776665443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.46 E-value=5.1 Score=50.39 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=96.8
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---
Q 001357 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE--- 334 (1093)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 334 (1093)
+.|.....+..|+.++...|++++|+.+..++.- .....+.....+.+++...+..++...|+..+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 4566666666666666666666666666655542 22334566677777777777777777777777776552
Q ss_pred --cCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 335 --INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 335 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
.+..|.......+++.++...+.++.|+.+++.+++.. | .....+..++.++...+++..|+........
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 23456666667777777777888888888888877652 2 2456677778888888888887777666554
Q ss_pred h
Q 001357 405 I 405 (1093)
Q Consensus 405 ~ 405 (1093)
+
T Consensus 1128 i 1128 (1236)
T KOG1839|consen 1128 I 1128 (1236)
T ss_pred H
Confidence 3
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=6.5 Score=49.51 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------Y 372 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~ 372 (1093)
.-....+......|.+.+|.+ ..+++..+. ..+....++..++.++...|++++|+....++.-+ .
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345556777777888888877 433333211 45777888999999999999999999988776543 3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC
Q 001357 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 443 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--------~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 443 (1093)
|+....+..++...+..++...|+..+.++..+ .|.......++..++ ..+.++.|+.+++.|........
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 455678888888888889999999999888764 466677778888888 77999999999999998765543
Q ss_pred CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 444 EE---VPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 444 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
.+ .....+..++..+...+++..|....+.....
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 32 22455666777777778877777777666553
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.19 E-value=2.4 Score=47.34 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
...+..|+..|.+++...|.....+..++.++++. |+.-.|+..+..++.++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 44566899999999999999999999999988877 566778888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001357 184 FYKRALQVHPSC 195 (1093)
Q Consensus 184 ~~~~al~~~p~~ 195 (1093)
....+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 998888888866
|
|
| >KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.98 E-value=7.3 Score=37.65 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=19.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 001357 905 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 934 (1093)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 934 (1093)
.++++|+++| ..+.+++.-..-.-.|+.
T Consensus 195 aeek~Kr~~E--~qKnfEEsRd~Rv~sWrn 222 (250)
T KOG1150|consen 195 AEEKRKRERE--WQKNFEESRDGRVGSWRN 222 (250)
T ss_pred HHHHHHHHHH--HHHHHHHhcccccchHHH
Confidence 4455565555 678888877777778874
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.70 E-value=19 Score=41.47 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
..-...+..|+++.+....... ...|.- ..-....+..+.+.|.++.|+.+.. + +..++.++ .++|
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeLA---l~lg 332 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFELA---LQLG 332 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHH---HHCT
T ss_pred HHHHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHHH---HhcC
Confidence 3445566789999988887521 222322 3345666777778888888877642 2 34555444 5788
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
+++.|..... ..+++..|..||...+.+|+ ++-|..+|+++-. +..|..+|...|+.+...++.
T Consensus 333 ~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAK-----ELDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 8888887643 33477899999999999999 8888888876532 345566777788877766666
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1093)
..+.... -+...-.+++..|++++.+.++..
T Consensus 397 ~~a~~~~--------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG--------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc--------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6655432 122233344555666666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=86.44 E-value=2.9 Score=31.08 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 760 (1093)
.+|..+-+.|.+.|++++|.++|+++.+. .-.++..++..+..++
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 44555555566666666666666665543 2344444444444443
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=86.33 E-value=39 Score=35.56 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhcc
Q 001357 691 FDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQ 765 (1093)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~ 765 (1093)
....+.++.++.+........ -...+...+|.-|+..|+++.|+.+|+.+...|....- ..++..+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 344566666666655321111 13455668899999999999999999999887754443 6777889999999999
Q ss_pred HHHHHHHHHHHH
Q 001357 766 WQDCKKSLLRAI 777 (1093)
Q Consensus 766 ~~~A~~~~~~al 777 (1093)
.+..+.+.-+++
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 999887766554
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.29 E-value=5 Score=39.75 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=62.1
Q ss_pred HhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhh
Q 001357 686 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEA 763 (1093)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~la~~~~~~ 763 (1093)
...-.-..|...|-++-.. +..+++...+.||..|.+ .+..+|+.+|-++++..... .++.++..|+.++++.
T Consensus 117 Wsr~~d~~A~~~fL~~E~~----~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGT----PELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCcHHHHHHHHHHcCC----CCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3344456777776665332 234789999999998885 78999999999999987544 3599999999999999
Q ss_pred ccHHHHH
Q 001357 764 EQWQDCK 770 (1093)
Q Consensus 764 g~~~~A~ 770 (1093)
|+++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9998875
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=86.23 E-value=61 Score=36.15 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
...|+.++..-.-.|+.+-|.-.-.+++.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 345555566666666666666666655554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.12 E-value=8.3 Score=44.24 Aligned_cols=123 Identities=16% Similarity=0.109 Sum_probs=55.8
Q ss_pred HhcCChHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHH
Q 001357 536 EQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
...++++.+...... -...|.. ..-...++..+.+.|-++.|+.+. .++...+.|+ ++.|+.+.|..
T Consensus 272 v~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHH
Confidence 345677776555531 1111221 233455556666666666665443 2344444433 55666666655
Q ss_pred HHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhH
Q 001357 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1093)
Q Consensus 615 ~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 694 (1093)
.... ..+...|-.||.. .+.. |+++-|..+|+++- -+..|..+|.-.|+.+.=
T Consensus 340 ~a~~------~~~~~~W~~Lg~~-AL~~------------g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDE-ALRQ------------GNIELAEECYQKAK--------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HCCC------CSTHHHHHHHHHH-HHHT------------TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHH
T ss_pred HHHh------cCcHHHHHHHHHH-HHHc------------CCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHH
Confidence 5431 1244455566666 5555 66666666665542 133445555555554333
Q ss_pred HHH
Q 001357 695 KDL 697 (1093)
Q Consensus 695 ~~~ 697 (1093)
..+
T Consensus 393 ~kl 395 (443)
T PF04053_consen 393 SKL 395 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.85 E-value=93 Score=37.89 Aligned_cols=123 Identities=7% Similarity=-0.018 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1093)
...+.-|...++.|++..+..+...+.+.... ..+-+..+..+... .....+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~--------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLY--------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcH--------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 46788899999999999998888876432111 11111111111100 012234445
Q ss_pred HhcCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 121 SRIDMHEPSTWVGKGQLL---LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
+..+|+.|.....+.... ...+++..-+.++ ...|.+.......+......|+-.+|......+-...
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 556677666555544433 2345555544422 2347777776777777888888887877766665443
|
|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.84 E-value=6.4 Score=46.01 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001357 858 KHLLDAAKIHREAAER---EEQQNRQRQEAARQAALAEEA 894 (1093)
Q Consensus 858 ~~l~~~~~~~~~~~~~---~e~~~~~~~~~~~~~~~~~~~ 894 (1093)
..-|++-.+.++.+++ ++.+.+.|-|++|+.|+.+|+
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkererqEq 365 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQ 365 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 223344444555555543333
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=85.77 E-value=5.4 Score=34.57 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=30.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 138 LLAKGEVEQASSAFKIVLEADR----DN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p----~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
.+..|+|..|++.+.+.+.... .. ..+++.+|.++...|++++|+..+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456666666655555543321 11 2345556666666666666666666665543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.64 E-value=1.7 Score=30.68 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 750 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
..++..||.+|...|++.+|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999875
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.46 E-value=16 Score=38.63 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
++..++..+...|+++.+...++..+..+|-+...|..+...|+..|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666666666666666666554
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=85.36 E-value=14 Score=40.55 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--------C-----CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADR--------D-----NV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p--------~-----~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
-|..++++++|..|..-|..++.+.. . ++ ..--.+..||.++++.+-|+...-+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 35667778888888877777776521 1 11 223557889999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
..-++..|.|+..+.+|.+|...+.-+
T Consensus 262 -frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 -FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999988765543
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.25 E-value=4.7 Score=41.92 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1093)
+.+..|....+..+.++|.++.-+.-+|.+|.+.|.+.-|+..+...+...|+.+.+-...+..
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344777777777777777777777777777777777777777777777777777665555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=84.95 E-value=1.2 Score=30.06 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (1093)
|...++.+...|++.|++++|..+|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6778888888888888888888888765
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.16 E-value=36 Score=37.62 Aligned_cols=136 Identities=17% Similarity=0.107 Sum_probs=98.5
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFN----RG 176 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g 176 (1093)
...+...++.-+.+...+++.+|.+..+|+.+..++.+.+. +..=+.++.++++.+|.|..+|...=.+... ..
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 44566678888999999999999999999999999998874 6889999999999999998887544333322 22
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
...+=+.+..+++..++.+-. +|.....++-. .|+ ...-+.....++-.+|++..+|+..-.
T Consensus 164 ~~~~El~ftt~~I~~nfSNYs-aWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSNYS-AWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred cchhHHHHHHHHHhccchhhh-HHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 366778899999998888833 34444333331 231 223344555666679999999887433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.15 E-value=1.4 Score=27.53 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 001357 716 VWINLAHVYFAQGNFALAMKMY 737 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~ 737 (1093)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555556655555554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.72 E-value=3.7 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCChHHHHHH
Q 001357 166 LGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~ 184 (1093)
+++|..+...|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.41 E-value=9.2 Score=37.93 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001357 393 EKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 393 ~~A~~~l~~~l~~~-p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 468 (1093)
+.|...|-++-... -+++...+.||..|...+..+++..+.+++.+.+. +...+++++..|+.++...|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34444444432211 23456666666666666666666666666665443 22455777777777777777777664
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=83.06 E-value=3.8 Score=28.00 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFK--IVLEADRDN 161 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~--~al~~~p~~ 161 (1093)
+.|+.+|..+...|++++|+..|+ -+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 568899999999999999999954 777777654
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=82.99 E-value=5.3 Score=44.60 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=66.0
Q ss_pred hhCCC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcC-CCCCCchhHHHHH--------HHHHHHhcCHHHHHHHH
Q 001357 669 VQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINL--------AHVYFAQGNFALAMKMY 737 (1093)
Q Consensus 669 ~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~l--------g~~~~~~g~~~~A~~~~ 737 (1093)
+.+|+ ++....+.-..++...++.+-+...........- ..+ ....++..| ..+++-.|+|..|++.+
T Consensus 67 ~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~-g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l 145 (404)
T PF10255_consen 67 ENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEY-GSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVL 145 (404)
T ss_pred hhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhccc-ccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHh
Confidence 33455 4444555555556666666655555442111100 001 223344443 36688899999999997
Q ss_pred HHHHH----hhcC-C-CCHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 001357 738 QNCLR----KFYY-N-TDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 738 ~~al~----~~~~-~-~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
+..-- .+.. + -...++|++|.+|...++|.+|+++|..++-
T Consensus 146 ~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 146 ENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66411 1111 1 2378899999999999999999999977654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.52 E-value=8.8 Score=40.55 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1093)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l 403 (1093)
.++..++..+...|+++.++..++..+..+|.+-..|..+..+|...|+...|+..|+++-
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.52 E-value=0.98 Score=53.19 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhCCCC
Q 001357 824 LENAVRVFSHLSAASNL 840 (1093)
Q Consensus 824 l~~a~~~~~~l~~~~~~ 840 (1093)
..+||+.|.++...+..
T Consensus 1256 ~~~aIh~FD~ft~~~~G 1272 (1516)
T KOG1832|consen 1256 IPEAIHRFDQFTDYGGG 1272 (1516)
T ss_pred cHHHHhhhhhheecccc
Confidence 35889999988765443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.45 E-value=2.7 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+++..||.+-+..++|.+|+.-|++|+..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=82.19 E-value=13 Score=41.55 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~a-------l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|.+|+.+++|.+|+..|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888889999998887643 2223444466788999999999999999999998764
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.11 E-value=2.4 Score=26.45 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~ 65 (1093)
.+.+.+|.+|+.+|++++|+.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1093 | ||||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 1e-12 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 9e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 3e-12 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 2e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 1e-11 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-04 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 2e-10 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 3e-09 | ||
| 1w3b_A | 388 | The Superhelical Tpr Domain Of O-Linked Glcnac Tran | 2e-06 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 9e-08 | ||
| 3vtx_A | 184 | Crystal Structure Of Mama Protein Length = 184 | 1e-06 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-05 | ||
| 3zgq_A | 482 | Crystal Structure Of Human Interferon-induced Prote | 5e-05 | ||
| 4hoq_A | 482 | Crystal Structure Of Full-length Human Ifit5 Length | 3e-04 | ||
| 2fi7_A | 265 | Crystal Structure Of Pilf : Functional Implication | 4e-04 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 4e-04 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 5e-04 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 6e-04 | ||
| 2ho1_A | 252 | Functional Characterization Of Pseudomonas Aerugino | 6e-04 |
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5 Length = 482 | Back alignment and structure |
|
| >pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa Length = 265 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 9e-43
Identities = 65/367 (17%), Positives = 141/367 (38%), Gaps = 22/367 (5%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A ++ + R + + + +++++ + ++ + A V
Sbjct: 18 AERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 77
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
RG+ +++E Y+ AL++ P + + G + A QA+ ALQ +P+
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDG-YINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 233 ALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
L L E A +A E P A+A + L F G+ +L
Sbjct: 137 VRSDLGNLLKALGRLEEA-----KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E A+ + P +Y NL +++A Y+ ++ ++ P+ + L
Sbjct: 192 FEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLS-PN-HAVVHGNLAC 245
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V + G A+ + + +E+ P + L + + G + +A++ A ++ P A
Sbjct: 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAH 468
+ +L + + A L +KA E P +N+ + ++G+ + A
Sbjct: 306 DSLNNLANIK------REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 469 QSFKDAL 475
+K+A+
Sbjct: 360 MHYKEAI 366
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 1e-41
Identities = 73/349 (20%), Positives = 138/349 (39%), Gaps = 22/349 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ G+ E A + + DN LL + + F R S F A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
+P A +G + GQL +A + ++ AL+L P+ ++ + LA + E A
Sbjct: 62 QNPLLAEA-YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
++ A + P + L N G+ + A+ P + ++
Sbjct: 121 -----VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAW 172
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
NL ++++G+ A ++ +V ++ P F+ Y LG V + F A+ + +
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV-TLD-P-NFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
L + P++ L +Y + G I+ A + R+A ++ P A+ +L L
Sbjct: 230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL------KE 283
Query: 429 LDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ A A P + LNN+ I E+G E A + ++ AL
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 1e-39
Identities = 75/404 (18%), Positives = 150/404 (37%), Gaps = 48/404 (11%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALG-------- 90
+ +A ++ G E Q+ + V +I
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWR------QEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 91 ------------VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y+ LG + ++ + +E A ++Y A R+ ++ L
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQE----AIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+A G++E A A+ L+ + D + GR ++ Y +A++ P+ A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
+G G++ A F++A+ LDP ++A + L + + + A +
Sbjct: 172 -WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA-----VAA 225
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
RA + P A+ LA ++ G L A+ P +Y NLA +
Sbjct: 226 YLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALK 282
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
KG +A Y ++ + L ++ + G+ A+ + K LE++P+
Sbjct: 283 EKGSVAEAEDCYNTAL-RLCP--THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L + Q G++++A ++A +I P A A+ ++G L
Sbjct: 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-35
Identities = 72/457 (15%), Positives = 148/457 (32%), Gaps = 95/457 (20%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGV-LLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
+ +P EA L + + + A +E + A + P LA G
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEA-----IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
Q +AL P +L + G E+A Y+ +++ +P F
Sbjct: 116 DMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQP-NFA 169
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
+ P A N+ +++E+G
Sbjct: 230 LSLSPNHAVV--------------------------------------HGNLACVYYEQG 251
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A +++ A+ E + +
Sbjct: 252 LIDLAIDTYRRAI------------------------------------ELQPHFPD--- 272
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
NLA L++ A Y L + D+ LA I + + N++ ++ L
Sbjct: 273 ----AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+AL+V ++ A S L + + +A ++ A
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 72/436 (16%), Positives = 143/436 (32%), Gaps = 71/436 (16%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA + GD+E A + M ++ +P + L + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQ--EP-DNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 426
++ P E LG++Y + GQ+++A E R A ++ P +I+L L++ D
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
A+ A+ +A V +++G + G E A + A+
Sbjct: 119 GAVQAYVSALQYNPDL-----YCVRSDLGNLLKALGRLEEAKACYLKAI----------- 162
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E N NL + + A
Sbjct: 163 -------------------------ETQPNFAV-------AWSNLGCVFNAQGEIWLAIH 190
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ + +++DAY+ L + K ++ AL ++ + L + +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
A +T+R A A +L N AL+ + + +A++ Y
Sbjct: 251 GLIDLAIDTYRRAI-ELQPHFPDAYCNLAN-----ALKEKGS--------VAEAEDCYNT 296
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 726
+ ++ + N + E+G + + L+ + E NLA V
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQ 351
Query: 727 QGNFALAMKMYQNCLR 742
QG A+ Y+ +R
Sbjct: 352 QGKLQEALMHYKEAIR 367
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 7e-31
Identities = 89/489 (18%), Positives = 161/489 (32%), Gaps = 104/489 (21%)
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+ + Y+ G A + + + +P+N L+ L+ + Q + + A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR---LDRSAHFSTLA 59
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+ P A A + L N + GQ + AL + P Y NLA + + GD
Sbjct: 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK---PDFIDGYINLAAALVAAGD 116
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
E A Y++++ + N P LG + LG A + K +E P+
Sbjct: 117 MEGAVQAYVSAL-QYN-PD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLK 440
LG ++ G+I A KA +DP A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--------------------------- 206
Query: 441 KAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500
N+G + E F+ A ++ AL
Sbjct: 207 -----------INLGNVLKEARIFDRAVAAYLRAL------------------------- 230
Query: 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 560
L N V NLA + + A YR + + D
Sbjct: 231 ------------------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620
AY LA K + ++ + + N AL++ + ++L+ L +++ + + +A +R A
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 621 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANG 680
+ + A +L + L+ + + L++A Y I + A +
Sbjct: 333 -EVFPEFAAAHSNLAS-----VLQQQGK--------LQEALMHYKEAIRISPTFADAYSN 378
Query: 681 AGVVLAEKG 689
G L E
Sbjct: 379 MGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 7e-30
Identities = 76/454 (16%), Positives = 153/454 (33%), Gaps = 72/454 (15%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + + GDF +A + ++ PDN L L I+ Q +++++ A K
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+P A+A+ +LG + + A + A P I+ N+ G
Sbjct: 62 QNPLLAEAYSNLGNVY------KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ E A Q++ AL + + +
Sbjct: 116 DMEGAVQAYVSAL------------------------------------QYNPDLYC--- 136
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
V +L LL+ + A Y + ++ A+ L + A+ + L+I
Sbjct: 137 ----VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF 192
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A+ ++ + +A LG++ + + +A + A + + +L
Sbjct: 193 EKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL-SLSPNHAVVHGNLAC-----V 246
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ ++ A + Y R I A L EKG ++D +
Sbjct: 247 YYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
D NLA++ QGN A+++Y+ L + A LA +
Sbjct: 299 RLCPTH-----ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ 351
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ Q+ AI ++P+ + G +++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-28
Identities = 74/458 (16%), Positives = 150/458 (32%), Gaps = 76/458 (16%)
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
LA+ + G E+ P + L+ + +++ + ++K
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
+ P Y LG V + G + A+ ++ L + PD + L V G +E
Sbjct: 62 Q--NP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVL 451
A + A + +P DLG LL AL + A+ KA E P
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLL------KALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511
+N+G + +GE A F+ A+
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAV------------------------------------ 196
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
D N ++ NL +L++ A Y L ++ + LA +
Sbjct: 197 TLDPNFLD-------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631
+ + L+I+ A+++ +P+A L + + +A++ + A + +
Sbjct: 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL-RLCPTHADSL 308
Query: 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 691
+L N R + +E+A LY + + A + VL ++G+
Sbjct: 309 NNLAN-----IKREQGN--------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355
Query: 692 DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729
+ + + + D + N+ + +
Sbjct: 356 QEALMHYKEAIRISP-----TFADAYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-21
Identities = 59/306 (19%), Positives = 119/306 (38%), Gaps = 45/306 (14%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D ++ +A G +E + L+ + VR + +L ALG
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQ------YNPDLYCVRSDLGNLLKALGRLEEAK 155
Query: 93 ----------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQ 136
++ LG + Q E A ++ KA +D + ++ G
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL----AIHHFEKAVTLDPNFLDAYINLGN 211
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196
+L ++A +A+ L ++ ACV + +G +++ Y+RA+++ P P
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254
A + + G + +A + AL+L P + ++L LA + E A +
Sbjct: 272 DA-YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA-----V 325
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
++A E++P A A + LA+ G+ + A+ ++ PT + +Y N+ +
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSNMGNT 382
Query: 315 YHSKGD 320
D
Sbjct: 383 LKEMQD 388
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-38
Identities = 53/408 (12%), Positives = 123/408 (30%), Gaps = 42/408 (10%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILE----------------EGSSPEIDEYYADVRY 80
+ + + Y ++ +++ L ++ E + + Y
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 81 ERIAILNA--LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
+ +A L Y + + E + Y + + K L
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELR-----RAEDYLSSINGLEKSSDLLLCKADTL 315
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ + +LE D N+ G + + HP
Sbjct: 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
L +G+ + ++ +AR+ F ++ +DP+ A + A ++ A +
Sbjct: 376 -WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA-----ISA 429
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
A ++ + +L G L + +++ A+ L
Sbjct: 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---QYDPLLLNELGVVAF 486
Query: 317 SKGDYEKAGLYY----MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+K D + A ++ + K + + + LG KL + +A+ + L +
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
++ A+ +Y+ A L ++ I P + A L L
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 3e-36
Identities = 61/468 (13%), Positives = 136/468 (29%), Gaps = 44/468 (9%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85
A +L + A K + +L E + DE A+ +
Sbjct: 136 AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID--MHEPSTWVGKGQLLLAKGE 143
+ G++ T + A + Y +A +D +E + LL A E
Sbjct: 196 IKLEASMCYLRGQVYTNLSNFDR----AKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251
Query: 144 VEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + + D + +L + + E Y ++ + L
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL-LC 310
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRA 260
+ + + L++DP N++ +
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL-----YLISNDL 365
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYH 316
+ +P A+ + ++ + A + P ++ A S+
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKI-------SEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
+G++++A Y + + + PY LG ++LG+ A + ++ +
Sbjct: 419 IEGEHDQAISAYTTAA-RLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP 475
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKI-------DPRDAQAFIDLGELLISSDTGAAL 429
L LG + ++ A + A + + A + +LG L
Sbjct: 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY------RKL 529
Query: 430 DAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ A L + V I +++ K A ++L
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 5e-33
Identities = 70/541 (12%), Positives = 154/541 (28%), Gaps = 68/541 (12%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA-LLGQACV 171
A K I P+ Q+ G+ +A +R + L V
Sbjct: 103 AAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161
Query: 172 E---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216
+ R ++ + + + ++ G L +A
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLE--ASMCYLRGQVYTNLSNFDRA 219
Query: 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
++ ++ AL +D + EA L L + + +L L
Sbjct: 220 KECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279
Query: 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336
+ + E L+ N S A + + + ++
Sbjct: 280 NKTSHEDEL---RRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-- 334
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P+ + Y + G+ +++ +P+ T A+G Y+ + +I +A+
Sbjct: 335 DPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393
Query: 397 ELLRKAAKIDPRDAQAFIDLG-ELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 455
K++ +DP+ A+I I + A+ A+ TA L + +G
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLG 448
Query: 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 515
+ H + G A++ + +
Sbjct: 449 MQHMQLGNILLANEYLQSSY------------------------------------ALFQ 472
Query: 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575
L V FN + + I+ A +L + + + + L +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532
Query: 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635
+I+ +N+ L ++ N + + + L A + A + A+ L
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL-AISPNEIMASDLLK 591
Query: 636 N 636
Sbjct: 592 R 592
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-27
Identities = 66/541 (12%), Positives = 137/541 (25%), Gaps = 83/541 (15%)
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
+LA + TG + + L S Y A D++ A +
Sbjct: 122 WLAQVYCCTGDYARAKCLLTKEDLYNRS----SACRYLAAFCLVKLYDWQGALNLLGETN 177
Query: 333 KEINKPHEFIFP-------------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y GQV L +F A +++ L + E
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439
L ++ E L + DA L L ++ + D + A L
Sbjct: 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK--TSHEDELRRAEDYL 295
Query: 440 KKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497
+ + ++L F + F L
Sbjct: 296 S-SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL---------------------- 332
Query: 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557
E D +++ V L + + ++ ++ ++ +
Sbjct: 333 --------------EIDPYNLD-------VYPLHLASLHESGEKNKLYLISNDLVDRHPE 371
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
+L + N + + +++ ++ ++ A + +A +
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431
Query: 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677
A+ L LG + A E +
Sbjct: 432 TAARL-FQGTHLPYLFLGM-----QHMQLGN--------ILLANEYLQSSYALFQYDPLL 477
Query: 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMK 735
N GVV K + + F + + W NL H Y + A+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795
L DA + +A + + L ++ ++P+ A++
Sbjct: 538 ALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
Query: 796 K 796
+
Sbjct: 596 E 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 61/578 (10%), Positives = 134/578 (23%), Gaps = 104/578 (17%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +Y + ++ L + + A L G +A+ + + +
Sbjct: 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLA--QVYCCTGDYARAKCLLTKEDLYNRSSACR 153
Query: 234 LVALAVMDL-----QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288
+A + A G K ++ + A+ + GQ +
Sbjct: 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213
Query: 289 QLTETALA----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ A ++ L ++ D E + + + F+
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + D ++ + + + L + + K +
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
IDP + +V E GE
Sbjct: 334 IDPYNL--------------------------------------DVYPLHLASLHESGEK 355
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ D + + W
Sbjct: 356 NKLYLISNDLV------------------------------------DRHPEKAVT-WLA 378
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
V + + + + A + + A++ A +I
Sbjct: 379 VGIYYLCVNKISE-----ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644
A ++ LG ++ + + A E +++ A D LG
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY-ALFQYDPLLLNELGV-----VAF 486
Query: 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704
N+ H + A L + G + +D + D Q
Sbjct: 487 NKSDMQTAIN-HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
Query: 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
++ +V +A VY + LA+ L
Sbjct: 546 ST-----NDANVHTAIALVYLHKKIPGLAITHLHESLA 578
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 68/538 (12%), Positives = 139/538 (25%), Gaps = 91/538 (16%)
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSY---YNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L++Q + A V + + + LA+ Y GDY +A + N+
Sbjct: 92 HDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARA-KCLLTKEDLYNRSS 150
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA----------------LG 383
Y +KL D++ AL + D K G
Sbjct: 151 AC---RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 443
+Y L ++A+E ++A +D + +AF L + + K + K
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267
Query: 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFK 503
+ + E A
Sbjct: 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSI----------------------------- 298
Query: 504 DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563
+ +L A L + + IL +D Y
Sbjct: 299 --------NGLEKSSD-------LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343
Query: 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623
A + N+ + + + +G L + +A+ F +S
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM- 402
Query: 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683
D + A + + + E ++A YT G+
Sbjct: 403 DPQFGPAWIGFAH-----SFAIEGE--------HDQAISAYTTAARLFQGTHLPYLFLGM 449
Query: 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743
+ G ++ + P + L V F + + A+ +QN L
Sbjct: 450 QHMQLGNILLANEYLQSSYALFQYD-----PLLLNELGVVAFNKSDMQTAINHFQNALLL 504
Query: 744 FYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
A L + + + + +L + + L+ ++ + +
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 5e-22
Identities = 65/455 (14%), Positives = 140/455 (30%), Gaps = 41/455 (9%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
L ++ A EKVL+I + + L +Y G +A+ LL K +
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-WLAQVYCCTGDYARAKCLLTKEDLYN 147
Query: 407 PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-----------EVLNNIG 455
A ++ L+ D AL+ K + + G
Sbjct: 148 RSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207
Query: 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSK-TKTYVIDASASMLQFKDMQLFHRFEND 514
++ F+ A + +K+AL ++D+K + + S +L + N
Sbjct: 208 QVYTNLSNFDRAKECYKEAL-------MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260
Query: 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN 574
+ + + L+ L D + + Y + + D L A R+
Sbjct: 261 STYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320
Query: 575 LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSL 634
+ + + L+++ + + ++ + K D + + L++
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPEKAVTWLAV 379
Query: 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694
G Y+ + + +A+ +++ A G A +G+ D +
Sbjct: 380 G--IYYLCVNK-----------ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+T G+ ++ L + GN LA + Q+ + D +L
Sbjct: 427 ISAYTTAARLFQGT-----HLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLN 479
Query: 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789
L + Q A+ L +
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 18/302 (5%)
Query: 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187
V + + + +V+E D + L + ++ +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 188 ALQVHPSCPGAIRLGIGLCRYKLGQLG-KARQAFQRALQLDPENVEALVALAV--MDLQA 244
+ ++PS P + +G +G AR+ +A L+ A +A
Sbjct: 82 LVDLYPSNPVS-WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
++ A M A ++ C + + Y+ + T L E+ AL++ P
Sbjct: 141 HDQA-----MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PED 192
Query: 305 SHSYYNLARSYHSKGDYEKAGLYY------MASVKEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + G+++ A ++ + ++ ++ LG V KL +
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
AL + L + P N T A+G+I+ +G E A + A + D + LG
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 419 LL 420
+
Sbjct: 313 CI 314
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-30
Identities = 60/375 (16%), Positives = 109/375 (29%), Gaps = 64/375 (17%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ I + + Q LD+ + +A ++ + ++E D ++A
Sbjct: 8 ETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVME------KDPFHASCLPV 61
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
I L L + E +K + P +W G L
Sbjct: 62 HIGTLVELN--------------KANE----LFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103
Query: 142 GE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
G E A ++ PA + + ++ Y A Q+ C +
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM- 162
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
L IGL A + F +AL + PE+ + + V+ Q E + + A
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE---WKTAEKWFLDA 219
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
E A+ NL
Sbjct: 220 LEKIK----------------------------AIGNEVTVDKWEPLLNNLGHVCRKLKK 251
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y +A Y+ + P Y +G + +G+F +A+ F L + D+ ++
Sbjct: 252 YAEALDYHRQ-ALVLI-PQNAS-TYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308
Query: 381 ALGHIYVQLGQIEKA 395
LGH +A
Sbjct: 309 MLGHCIEMYIGDSEA 323
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 7e-28
Identities = 45/339 (13%), Positives = 105/339 (30%), Gaps = 54/339 (15%)
Query: 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204
+ + + ++ ++N+ ++ A + + + ++ P + +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPV-HI 63
Query: 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL---QANEAAGIRKGMEKMQRAF 261
+L + + + + L P N + A+ L NE A + +A
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA-----RRYLSKAT 118
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A + S+ + ++
Sbjct: 119 TLEKTYGPA-------------------------------------WIAYGHSFAVESEH 141
Query: 322 EKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381
++A Y + ++ K P +G + + A F + L I P++ +
Sbjct: 142 DQAMAAYFTAA-QLMK--GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198
Query: 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA---FKTARTL 438
+G + Q G+ + A++ A + + ++ G + A
Sbjct: 199 VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 439 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
++A +P + IG IH G FE+A F AL
Sbjct: 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 48/349 (13%), Positives = 101/349 (28%), Gaps = 49/349 (14%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
+ + + + LA ++ + +LT + P + +
Sbjct: 9 TVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGT 65
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG-DFRSALTNFEKVLEIYP 373
+ V P + ++ +G L +G A K +
Sbjct: 66 LVELNKANELFYLSHKLVD--LYPSNPV-SWFAVGCYYLMVGHKNEHARRYLSKATTLEK 122
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFK 433
A GH + + ++A AA++ + +G + K
Sbjct: 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY------GLTNNSK 176
Query: 434 TARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491
A +A P V++ +GV+ F+ GE+++A + F DAL
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL---------------- 220
Query: 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551
+ +L NL + ++ A +R
Sbjct: 221 ------------------EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262
Query: 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600
L Y + I N + +++ + AL + +++MLG
Sbjct: 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 6e-16
Identities = 41/307 (13%), Positives = 88/307 (28%), Gaps = 34/307 (11%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L + DF+ V+E P + L V+L + + L K
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P + ++ +G G + AR L KA G +
Sbjct: 85 LYPSNPVSWFAVGCYY--LMVGHKNEH---ARRYLSKATTLEKTYGPAWIAYGHSFAVES 139
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM---LQFKDMQLFHRFENDGNH-V 518
E + A ++ A L + L++ E + +
Sbjct: 140 EHDQAMAAYFTAA-------QLMKG------CHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
Query: 519 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL---------FKYQDYVDAYLRLAAIA 569
+ V+ + + Q + A + L + L +
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629
+ +++ +AL + + + S +G + ++ A + F A D++
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRDDTF 305
Query: 630 ATLSLGN 636
+ LG+
Sbjct: 306 SVTMLGH 312
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 64/381 (16%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+ T + ++ +N + + +L + + +L + DP A L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE-FESAHQSFKDALGDGI 479
+ A + F + L+ +G + G E A + A
Sbjct: 67 --VELNKANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRYLSKA----- 117
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
T L+ A W
Sbjct: 118 --TTLEKT------YGPA------------------------WI------AYGHSFAVES 139
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
+ A Y + L + NN +L+ ++AL + + P + +
Sbjct: 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF---AALRNEKRAPKLEATH 656
G + +N +W A++ F A + + T+ R K+
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK-------- 251
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
+A + + + +V N + G + + G F+ + D F
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-----DDTFS 306
Query: 717 WINLAHVYFAQGNFALAMKMY 737
L H + A
Sbjct: 307 VTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 39/371 (10%), Positives = 108/371 (29%), Gaps = 66/371 (17%)
Query: 433 KTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKT 490
K + T++ ++ + + ++V+ ++ H+ +F+ ++ +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVM--------------- 49
Query: 491 YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550
E D H + L L + E L
Sbjct: 50 ---------------------EKDPFHASCLPVHIGTLVELNKANE-------LFYLSHK 81
Query: 551 ILFKYQDYVDAYLRLAAIAKARNNL-QLSIELVNEALKVNGKYPNALSMLGDLELKNDDW 609
++ Y ++ + + + + +++A + Y A G +
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH 141
Query: 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669
+A + A+ L +G + A+ +++ +
Sbjct: 142 DQAMAAYFTAAQL-MKGCHLPMLYIGL-----EYGLTNN--------SKLAERFFSQALS 187
Query: 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ----VQEAASGSVFVQMPDVWINLAHVYF 725
+ + + GVV + G++ ++ F ++ + + + NL HV
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785
+A A+ ++ L +A + H +++ A+ L +
Sbjct: 248 KLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 786 LRFDAGVAMQK 796
G ++
Sbjct: 306 SVTMLGHCIEM 316
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 8e-35
Identities = 82/578 (14%), Positives = 164/578 (28%), Gaps = 69/578 (11%)
Query: 53 QGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL 112
Q+ SP + YA L G ++
Sbjct: 4 MNGEPDIAQLKG--LSPSQRQAYAVQ-------LKNRGNHFFTAKNFN-----------E 43
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A +YY A +D +EP + ++ G++E+ LE D+ ALL +A
Sbjct: 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPE 229
+ G ++D++ +I + K + R Q+ P
Sbjct: 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163
Query: 230 NVEALVAL-----AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + N ++ + A + +AN
Sbjct: 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
L+ + + + + K + A + S+ ++
Sbjct: 224 MYHSLLSANTVDDPLR-ENAALALCYTGIFHFLKNNLLDAQVLLQESI-NLHPTPNS--- 278
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y L + + F+K +++ P+ T G +Y L + A+E +KA
Sbjct: 279 YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
++P + +I L LL F + + + P EV I ++G
Sbjct: 339 LNPENVYPYIQLACLL------YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+F++A + + A L + + K +V +
Sbjct: 393 DFDTAIKQYDIA------KRLEEVQEKIHVGIGPL--------------IGKATILARQS 432
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
++ + + A L A + LA + + +IEL
Sbjct: 433 SQDPTQLDEEKFNA-------AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485
Query: 583 NEALKVNGKYPNALSMLGDLEL-KNDDWVKAKETFRAA 619
++ + L E K ++A A
Sbjct: 486 EDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAK 523
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 4e-31
Identities = 70/460 (15%), Positives = 132/460 (28%), Gaps = 55/460 (11%)
Query: 41 DLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
+ I+ Y G +E+ + LE I ++ R + +LG +
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALE------IKPDHSKALLRRASANESLGNFTDAM 113
Query: 93 --YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ L E + ++ + Q+L + +
Sbjct: 114 FDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
F LE N Y + ALQ S + L
Sbjct: 174 FDSHLEVSSVN------------TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
A L AL + A +Q + ++P
Sbjct: 222 TDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA-----QVLLQESINLHPT- 275
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ +LA + + A+ P +YY+ + Y DY+ A
Sbjct: 276 PNSYIFLALTLADKENSQEFFKFFQKAVD---LNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
+ + +N E ++PY L + K G F + F + +P E I
Sbjct: 333 FQKAQ-SLNP--ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILT 389
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL----------ISSDTGAALDAFKTART 437
G + A + A +++ + + +G L+ T + F A
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449
Query: 438 LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
LL KA E P + + + + + + A + F+D+
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-25
Identities = 68/484 (14%), Positives = 147/484 (30%), Gaps = 40/484 (8%)
Query: 319 GDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
G + ++ + G +F A+ ++ +E+ P+
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTAR 436
+ Y+ G +EK E KA +I P ++A + S + A+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VL 119
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
+L +L K E+ + T L S +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL--EQIHDTVAASVLYRLILFK 554
S + + + ++ ++ + +A L + + +
Sbjct: 180 VSSVN-TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614
++ A +NNL + L+ E++ ++ N+ L ++ + +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFK 297
Query: 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 674
F+ A + + G + + AKE + + + N
Sbjct: 298 FFQKAV-DLNPEYPPTYYHRGQ-----MYFILQD--------YKNAKEDFQKAQSLNPEN 343
Query: 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734
+Y +L ++G+F S+ F + + F +P+V A + +G+F A+
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKL-----KFPTLPEVPTFFAEILTDRGDFDTAI 398
Query: 735 KMYQNCLR------KFYYN--------TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
K Y R K + T T + E++ K L +A L
Sbjct: 399 KQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458
Query: 781 PSNY 784
P +
Sbjct: 459 PRSE 462
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 8e-25
Identities = 79/592 (13%), Positives = 167/592 (28%), Gaps = 79/592 (13%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK---GMEKMQRAFEIYPYC 267
G + L P +A A+ + + N + ++ Q A E+ P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAY-AVQLKNR-GNHFFTAKNFNEAIKYYQYAIELDPNE 58
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ + ++ + TG V + T AL + P S + A + S G++ A
Sbjct: 59 PVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLRRASANESLGNFTDAMFD 115
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL-TNFEKVLEIYPDNCETLKALGHI- 385
+ I P + + L + + ++ P N G
Sbjct: 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175
Query: 386 -------YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 438
+ A LL A + + L++ + D + + +
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT----KSTDMYHSLLSA 231
Query: 439 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
L G+ HF K A ++++ L +Y+ A
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-------LHPTPNSYIFLAL 284
Query: 497 ASMLQFKDMQLFHRFENDGNH-VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555
D + F V+L ++ ++ + D A ++
Sbjct: 285 T----LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
+ V Y++LA + + S NE P + ++ D+ A +
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
+ A + E H+ ++ + L
Sbjct: 401 YDIAK--------------------------RLEEVQEKIHVGIG------PLIGKATIL 428
Query: 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735
+ ++ +F+ + L T+ E + I LA + A++
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELDP-----RSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD---CKKSLLRAIHLAPSNY 784
++++ T + A T EA + Q + + L + Y
Sbjct: 484 LFEDSAI--LARTMDE--KLQATTFAEAAKIQKRLRADPIISAKMELTLARY 531
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-22
Identities = 43/393 (10%), Positives = 107/393 (27%), Gaps = 76/393 (19%)
Query: 27 SDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + D L+ + D ++A + + + + E A L
Sbjct: 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA-------L 246
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+++ + A ++ + P++++ L K ++
Sbjct: 247 CYTGIFHFLKNNLLD-----------AQVLLQESINLH-PTPNSYIFLALTLADKENSQE 294
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
F+ ++ + + P + + F Y ++ E +++A ++P + +
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP-YIQLACL 353
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEIY 264
YK G+ ++ F P E A + D + A +++ A +
Sbjct: 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA-----IKQYDIAKRLE 408
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
+ T + + + + A
Sbjct: 409 EVQEKIHVGIGPLI---------------------GKATILARQSSQDPTQLDEEKFNAA 447
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV---------------- 368
+ E++ GL Q++L++ A+ FE
Sbjct: 448 IKLLTKAC-ELDP--RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504
Query: 369 ---------LEIYPDNCETLKALGHIYVQLGQI 392
L P ++ Y G +
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLARYRAKGML 537
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-33
Identities = 42/373 (11%), Positives = 100/373 (26%), Gaps = 22/373 (5%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + A V++ + V A+
Sbjct: 86 ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 228 PENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P+ V A+ L+ + + + +A + P +A+
Sbjct: 205 PQQVVAIASNGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ + A +T P + + + + + ++ + + + +
Sbjct: 260 RLLPVLCQAHGLT---PQQVVAIASNSGGKQALETVQRLLPVLCQAH-GLT--PQQVVAI 313
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
G + L + L + + P + + L +++ +L +A +
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 373
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 463
P A G AL+ + +L +A P + + +
Sbjct: 374 TPEQVVAIASNGGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 427
Query: 464 FESAHQSFKDALG 476
+ A G
Sbjct: 428 VQRLLPVLCQAHG 440
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-32
Identities = 43/374 (11%), Positives = 100/374 (26%), Gaps = 28/374 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V + + +A + + G A V++
Sbjct: 141 VAIASHDGGKQALETVQA----LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
V A+ + L +A + P AI G + L
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA-SNGGGKQAL 255
Query: 211 GQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268
+ + +A L P+ V A+ + L+ + + + +A + P
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRL-----LPVLCQAHGLTPQQV 310
Query: 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+A+ + + A +T P + + + + ++
Sbjct: 311 VAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVL 367
Query: 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388
+ + E + G + L + L + + P+ + +
Sbjct: 368 CQAH-GLT--PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
Query: 389 LGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI 448
L +++ +L +A + P+ A G AL++ + A +
Sbjct: 425 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGR------PALESIVAQLSRPDPALAALT- 477
Query: 449 EVLNNIGVIHFEKG 462
N+ V G
Sbjct: 478 ---NDHLVALACLG 488
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 2e-31
Identities = 40/364 (10%), Positives = 94/364 (25%), Gaps = 22/364 (6%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ + A V++ V A+ +
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
L +A + P AI + L + +A L PE V A+ +
Sbjct: 121 TVQRLLPVLCQAHGLTPEQVVAIA-SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179
Query: 237 LAVM--DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
L+ + + + +A + P +A+ + + A
Sbjct: 180 NGGGKQALETVQRL-----LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQA 234
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+T P + + + + ++ + + + +
Sbjct: 235 HGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNSGGKQA 288
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
L + L + + P + + G L +++ +L +A + P+ A
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 348
Query: 415 DLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 472
AL+ + +L +A P + + + G +
Sbjct: 349 SHDGGK------QALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 402
Query: 473 DALG 476
A G
Sbjct: 403 QAHG 406
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 6e-31
Identities = 55/512 (10%), Positives = 132/512 (25%), Gaps = 65/512 (12%)
Query: 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171
+A + ++D + +G + + ++ L + V A+
Sbjct: 22 VAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGG 81
Query: 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231
+ L +A + P AI + L + + +A L PE V
Sbjct: 82 KQALETVQRLLPVLCQAHGLTPQQVVAI-ASHDGGKQALETVQRLLPVLCQAHGLTPEQV 140
Query: 232 EALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
A+ + L+ +A + + +A + P +A+ +
Sbjct: 141 VAIASHDGGKQALETVQAL-----LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A +T P + + + + ++ + + + G
Sbjct: 196 VLCQAHGLT---PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNG 249
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L + L + + P + + L +++ +L +A + P+
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309
Query: 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 467
A G AL+ + +L +A P + + + +
Sbjct: 310 VVAIASNGGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527
A V +
Sbjct: 364 LPVLCQAH------------------------------------GLTPEQVVAIASNGGG 387
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
L + + A L + V A +A +Q + ++ +A
Sbjct: 388 KQALETVQRLLPVLCQAHGLT-------PEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440
Query: 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+ + A++ G + V A
Sbjct: 441 LTPQQVVAIASNGGGRPALESIVAQLSRPDPA 472
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 8e-24
Identities = 52/534 (9%), Positives = 120/534 (22%), Gaps = 87/534 (16%)
Query: 211 GQLGKARQAFQRALQLDPENVEALV----ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
L A + LQLD + + AV + A A + P
Sbjct: 18 ALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA-------PLNLTPE 70
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+A+ + + A +T P + + + + ++
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLP 127
Query: 327 YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386
+ E + + L ++ L + + P+ + + G
Sbjct: 128 VL---CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 387 VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEV 446
L +++ +L +A + P+ A G AL+ + +L +A
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK------QALETVQRLLPVLCQAHGLT 238
Query: 447 P--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504
P + + + G + A
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAH----------------------------- 269
Query: 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564
V + L + + A L V A
Sbjct: 270 -------GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL-------TPQQVVAIAS 315
Query: 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624
+A +Q + ++ +A + + A++ + + + A
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT 374
Query: 625 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684
+ A S G K +++ + + + A
Sbjct: 375 PEQVVAIASNGG-------------GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421
Query: 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738
+ Q Q + A + +
Sbjct: 422 KQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGRPALESIVAQLSRPD 470
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-23
Identities = 45/529 (8%), Positives = 113/529 (21%), Gaps = 78/529 (14%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317
++ + + H LT L +T P + + + +
Sbjct: 28 GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLT---PEQVVAIASHDGGKQA 84
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
++ + + + + L + L + + P+
Sbjct: 85 LETVQRL---LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV 141
Query: 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 437
+ + L ++ +L +A + P A G AL+ +
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK------QALETVQRLLP 195
Query: 438 LLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDA 495
+L +A P + + + G + A G L
Sbjct: 196 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG-------LTP--------- 239
Query: 496 SASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555
V + L + + A L
Sbjct: 240 --------------------QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP------ 273
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
V A + +A +Q + ++ +A + + A++ G + + +
Sbjct: 274 -QQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
A + A S K +++ + + +
Sbjct: 333 LCQAH-GLTPQQVVAIASHDG-------------GKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735
A G + Q + + A +
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHGLTP-----EQVVAIASHDGGKQALETVQRLLP 433
Query: 736 MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
+ + E A+ +++
Sbjct: 434 VLCQAHG--LTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 39/454 (8%), Positives = 90/454 (19%), Gaps = 38/454 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ + A L++ + G + L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A AL+ + +L +A P + + +
Sbjct: 67 LTPEQVVAIASHDGGK------QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 120
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A G L + L L
Sbjct: 121 TVQRLLPVLCQAHG------LTPEQVVAIASHDGGKQALETVQALLPVLCQA---HGLTP 171
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
+V + + + + + V A +A +Q + ++
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A + + A++ G + + + A + A S
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTPQQVVAIASNSG-----G 285
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ + +++ + + + A G + Q
Sbjct: 286 KQALET--------VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH 337
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
Q + A + + +
Sbjct: 338 GLTP-----QQVVAIASHDGGKQALETVQRLLPVLCQAHG--LTPEQVVAIASNGGGKQA 390
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
E Q L +A L P Q
Sbjct: 391 LETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQA 424
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 6e-11
Identities = 41/492 (8%), Positives = 102/492 (20%), Gaps = 105/492 (21%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H ++ + + + AG +++ G + +R+ALT
Sbjct: 4 HHHHHQWSGARALEALLTVAGELR-GPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG 62
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
L + P+ + + L +++ +L +A + P+
Sbjct: 63 --APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ--------------- 105
Query: 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484
+ + + + A
Sbjct: 106 -----------------------VVAIASHDGGKQALETVQRLLPVLCQAH--------- 133
Query: 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544
L +V + + + + A
Sbjct: 134 ----------------------------------GLTPEQVVAIASHDGGKQALETVQAL 159
Query: 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604
+ + V A +A +Q + ++ +A + + A++ G +
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 219
Query: 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664
+ + A + A S G + + +++ +
Sbjct: 220 ALETVQRLLPVLCQAH-GLTPQQVVAIASNGG-----GKQALET--------VQRLLPVL 265
Query: 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ + A + Q Q +
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP-----QQVVAIASNGGGK 320
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
A + + + E Q L +A L P
Sbjct: 321 QALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQV 378
Query: 785 TLRFDAGVAMQK 796
G Q
Sbjct: 379 VAIASNGGGKQA 390
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 2e-33
Identities = 65/398 (16%), Positives = 125/398 (31%), Gaps = 73/398 (18%)
Query: 43 WLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98
L + ++ G+ + QF ++ D Y R + +GK
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVD------GDPDNYIAYYRR-------ATVFLAMGK 52
Query: 99 IETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158
+ A K + M + + +G LLL +G++++A FK VL+++
Sbjct: 53 SK-----------AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101
Query: 159 RDNVPA---------------LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
L QA F+ Y+ ++ F + L+V R
Sbjct: 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL-RELR 160
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
C K G+ KA + A +L +N EA ++ + Q + + +++ ++
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD---HELSLSEVRECLKL 217
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ K + A G Y
Sbjct: 218 DQDHKRCFAHYKQ-------------------------VKKLNKLIESAEELIRDGRYTD 252
Query: 324 AGLYYMASVK-EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A Y + +K E + + + K A+ +VL++ PDN LK
Sbjct: 253 ATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Y+ ++A + A + + D Q L +
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-28
Identities = 61/366 (16%), Positives = 124/366 (33%), Gaps = 51/366 (13%)
Query: 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186
+ + G+ LLA G++ A S F ++ D DN A +A V G+ +L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + + A RL G K G+L +A F++ L+ +P E A +
Sbjct: 62 KVIALKMDFTAA-RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES-------- 112
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ +A E+ + AL+ + + L V +
Sbjct: 113 ---------QLVKADEMQRLRSQALDAFDG-----ADYTAAITFLDKILEV---CVWDAE 155
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
A + +G+ KA A+ K K + +Y + + +LGD +L+
Sbjct: 156 LRELRAECFIKEGEPRKAISDLKAASKL--KS-DNTEAFYKISTLYYQLGDHELSLSEVR 212
Query: 367 KVLEIYPDNCETLKALGHI------------YVQLGQIEKAQELLRKAAKIDPRDAQAFI 414
+ L++ D+ + ++ G+ A K +P A+ +
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV 272
Query: 415 DLGELLISSDTGAALDA---FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 469
E + A + + + P + L + + + ++ A Q
Sbjct: 273 RSKERI-----CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327
Query: 470 SFKDAL 475
++ A
Sbjct: 328 DYEAAQ 333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-21
Identities = 58/465 (12%), Positives = 138/465 (29%), Gaps = 120/465 (25%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ L + + G A + A+V + + P + YY V L +G ++AL +
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAV-DGD-P-DNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
KV+ + D GH+ ++ G++++A++ +K K +P + + +L+ + +
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-- 119
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
++ L + + F+ ++ +A L
Sbjct: 120 ---------------------MQRLRSQALDAFDGADYTAAITFLDKIL----------- 147
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E EL + + I D
Sbjct: 148 -------------------------EVCVWDAELRELRAECFIKEGEPRKAISD------ 176
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ D +A+ +++ + + +LS+ V E LK++ + + +
Sbjct: 177 -LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV---- 231
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
K + L + R A Y
Sbjct: 232 -------------------KKLNKLIESAE-----ELIRDGR--------YTDATSKYES 259
Query: 667 VI------VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINL 720
V+ ++T ++ + + + ++V + + + +
Sbjct: 260 VMKTEPSVAEYTVRSK--ERICHCFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDR 312
Query: 721 AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ 765
A Y + + A++ Y+ + D QI L + +Q
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-20
Identities = 55/434 (12%), Positives = 120/434 (27%), Gaps = 129/434 (29%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAF 261
G GQL A F A+ DP+N A A + + ++AA + + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVI 64
Query: 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
+ A +G
Sbjct: 65 ALKMDFTAA-------------------------------------RLQRGHLLLKQGKL 87
Query: 322 EKAGLYY------------MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
++A + + + + D+ +A+T +K+L
Sbjct: 88 DEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E+ + E + +++ G+ KA L+ A+K+ + +AF
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF---------------- 191
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
I ++++ G+ E + ++ L LD
Sbjct: 192 ----------------------YKISTLYYQLGDHELSLSEVRECL-------KLDQ--- 219
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549
D +K ++ ++ L R + A+ Y
Sbjct: 220 ----DHKRCFAHYKQVKKLNKLIESAE----------ELIRDGRYTD-------ATSKYE 258
Query: 550 LILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605
++ + + R+ +I + +E L++ NAL + L
Sbjct: 259 SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318
Query: 606 NDDWVKAKETFRAA 619
+ + +A + + AA
Sbjct: 319 EEMYDEAIQDYEAA 332
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 4e-19
Identities = 55/455 (12%), Positives = 115/455 (25%), Gaps = 108/455 (23%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ L G AL+ F ++ PDN +++ +G+ + A L K
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ A G + ++G+
Sbjct: 66 LKMDFTAA--------------------------------------RLQRGHLLLKQGKL 87
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ A FK L + S + + QL + ++ ++
Sbjct: 88 DEAEDDFKKVL----------------KSNPSEQEEKEAESQLVK-----ADEMQRLRSQ 126
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
F+ A I IL + A + +I +
Sbjct: 127 ALDAFDGADYTAAITF-------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALR 644
A K+ A + L + D + R L L + ++
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC------------LKL-DQDHKRCFA 226
Query: 645 NEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704
+ K+ KL L G++ + + V +
Sbjct: 227 HYKQVKKLNKLIES-----------------------AEELIRDGRYTDATSKYESVMKT 263
Query: 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 764
SV + H + A+++ L+ + L A + E
Sbjct: 264 -EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--MEPDNVNALKDRAEAYLIEE 320
Query: 765 QWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQK 796
+ + + A ++ A +++
Sbjct: 321 MYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 20/258 (7%)
Query: 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618
V+ +L L A L ++ + A+ + A + L A
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 619 ASDATDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673
A + A L G+ A + K+ K + +E +
Sbjct: 63 V-IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE---QEEKEAESQLVKAD 118
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ + + + + ++ E ++ A + +G A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKEGEPRKA 173
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFD 789
+ + + + + + ++ +Y+ + + + L + +
Sbjct: 174 ISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Query: 790 AGVAMQKFSASTLQKTRR 807
+ SA L + R
Sbjct: 232 KKLNKLIESAEELIRDGR 249
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 6e-31
Identities = 61/383 (15%), Positives = 120/383 (31%), Gaps = 39/383 (10%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFIL------------ATQYYNKASRIDMHEPSTWVGK 134
++ GV + E+H L A ++ A D + +
Sbjct: 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR 66
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ LA G+ + A V++ D A L + + +G+ ++ + +K+ L+ +PS
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 195 CPGAIR--------------LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
L + G A + L++ + E A
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL----- 295
++ E RK + ++ A ++ A ++ ++ G H L L
Sbjct: 187 FIKEGE---PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 296 ---AVTNHGPTKSH-SYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGLGQ 350
++ K A G Y A Y + +K E + + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K A+ +VL++ PDN LK Y+ ++A + A + + D
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 411 QAFIDLGELLISSDTGAALDAFK 433
Q L + D +K
Sbjct: 364 QIREGLEKAQRLLKQSQKRDYYK 386
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-27
Identities = 64/511 (12%), Positives = 131/511 (25%), Gaps = 115/511 (22%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
G L + Q+ + + L G+ +D+L + A+
Sbjct: 6 HHSSGVDLGTENLYFQSMADVE-----------KHLELGKKLLAAGQLADALSQFHAAVD 54
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A +G+ A + +QL + A + + + A
Sbjct: 55 GDPDNYIA-YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA 113
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ ++ + P + +
Sbjct: 114 -----EDDFKKVLKSNPSENEEKEAQSQL----------------------IKSDEMQRL 146
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
+ A + GDY A + ++ E + +K G+ R A+++ +
Sbjct: 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL---RELRAECFIKEGEPRKAISDLKAA 203
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
++ DN E + +Y QLG E + +R+ K+D + F
Sbjct: 204 SKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-------------- 249
Query: 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488
+K + L K G + A ++ +
Sbjct: 250 --HYKQVKKLNKL----------IESAEELIRDGRYTDATSKYESVM------------- 284
Query: 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548
+ + + E V + + V A +
Sbjct: 285 -----------------------KTEPSIAEY---TVRSKERICHCFSKDEKPVEAIRVC 318
Query: 549 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL---- 604
+L D V+A A +I+ A + N L +
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378
Query: 605 -KNDDWVKAKETFRAASDATDGKDSYATLSL 634
+ D+ K R A + +Y L+L
Sbjct: 379 SQKRDYYKILGVKRNAKKQ-EIIKAYRKLAL 408
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 2e-21
Identities = 58/492 (11%), Positives = 127/492 (25%), Gaps = 119/492 (24%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
H +++ ++ Y ++ + ++ K + LG+ L G AL+
Sbjct: 3 HHHHHSSGVDLGTENLYFQS-------MADVEK-------HLELGKKLLAAGQLADALSQ 48
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
F ++ PDN +++ +G+ + A L K ++ A
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA------------ 96
Query: 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484
G + ++G+ + A FK L
Sbjct: 97 --------------------------RLQRGHLLLKQGKLDEAEDDFKKVL--------- 121
Query: 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544
K+ + + Q ++ L + A D AA
Sbjct: 122 --KSNPSENEEKEAQSQLIKSD-----------------EMQRLRSQALNAFGSGDYTAA 162
Query: 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604
IL + A + +I + A K+ A + L
Sbjct: 163 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222
Query: 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664
+ D + R L L + ++ + K+ KL
Sbjct: 223 QLGDHELSLSEVREC------------LKL-DQDHKRCFAHYKQVKKLN----------- 258
Query: 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ L G++ + + V + + + H +
Sbjct: 259 ------------KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR-SKERICHCF 305
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
A+++ L+ + L A + E + + + A ++
Sbjct: 306 SKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363
Query: 785 TLRFDAGVAMQK 796
+R A +
Sbjct: 364 QIREGLEKAQRL 375
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-18
Identities = 49/374 (13%), Positives = 110/374 (29%), Gaps = 49/374 (13%)
Query: 43 WLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAILNALGVY-YTYLG 97
L KQGK+++ F+++L+ + + + + ++ + +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQA 150
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
+ A + +K + + + + + + +GE +A S K +
Sbjct: 151 LNAFGSGDYTA----AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-----------GIGLC 206
DN A + + + G + SL + L++
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ G+ A ++ ++ +P E V + + ++ P
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325
AL A + + ++ + H L ++ +K
Sbjct: 327 DNVNALKDRAEAYLIEEMY---DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRD 383
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
Y + VK K E I Y L L+ +PDN + +
Sbjct: 384 YYKILGVKRNAKKQEIIKAYRKLA-------------------LQWHPDNFQNEEEKKKA 424
Query: 386 YVQLGQIEKAQELL 399
+ I A+E+L
Sbjct: 425 EKKFIDIAAAKEVL 438
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 23/254 (9%), Positives = 62/254 (24%), Gaps = 39/254 (15%)
Query: 558 YVDAYLRLAAI-----------------------AKARNNLQLSIELVNEALKVNGKYPN 594
+ + A L ++ + A+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI 61
Query: 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW-----NYFAALRNEKRA 649
A + L A + A L G+ A + K+
Sbjct: 62 AYYRRATVFLAMGKSKAALPDLTKVIQL-KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 650 PKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709
K + +E + + + + + G + + ++ E
Sbjct: 121 LKSNPSE---NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD- 176
Query: 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDC 769
++ A + +G A+ + + NT+A ++ +Y+ +
Sbjct: 177 ----AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELS 230
Query: 770 KKSLLRAIHLAPSN 783
+ + L +
Sbjct: 231 LSEVRECLKLDQDH 244
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 9e-30
Identities = 68/447 (15%), Positives = 133/447 (29%), Gaps = 80/447 (17%)
Query: 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL 155
L + E + E+ T++ N+ + M L KG+ E A +
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCN-----LLAYLKHLKGQNEAALECLRKAE 78
Query: 156 EADRDNVPALLGQ---------ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR------ 200
E + A V ++ GR SD + + V R
Sbjct: 79 ELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138
Query: 201 ---LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257
G + Q +A+ F++AL+ P+N E LA+ + + + ++ +
Sbjct: 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 258 QRAFEIYPYCAMALNYLANHFF----FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313
++A + P LA + E+L E AL P + + A+
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAK 255
Query: 314 SYHSKGDYEKA---------------------GLYYMASVKEINKPHEFIFPYYGLGQVQ 352
Y K + +KA G Y A V ++ E G+ +
Sbjct: 256 FYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE-----NGMYGKR 310
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-- 410
L A+ + +K E + L ++ Q E+A+ +K +
Sbjct: 311 KLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Query: 411 -QAFIDLGELL-------------------ISSDTGAALDAFKTARTLLKKAGEEVP--I 448
+ G I+ + + + K +
Sbjct: 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADS 430
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDAL 475
E L+ + + + + A + + L
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGL 457
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-29
Identities = 64/433 (14%), Positives = 143/433 (33%), Gaps = 51/433 (11%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
+ + + ++A +G+ E + L + E+ +
Sbjct: 44 FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y ++G++ Q ++ + ++ + RI+ E G +L + E+A F+
Sbjct: 104 YYHMGRLSDVQIYVDKVKHVCEKFSS-PYRIESPELDCEEGWTRLKCGGNQNERAKVCFE 162
Query: 153 IVLEADRDNVPALLGQACVEF---NRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGL--C 206
LE N G A + N ++++ ++A++++P + L + L
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
R + + G+ + + AL+ P + L + A + +E K +E +++A E P
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE---PDKAIELLKKALEYIPN 279
Query: 267 CAMALNYLANHFFFTGQHFL------------VEQLTETALA----VTNHGPTKSHSYYN 310
A + + + + +L A+A
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL-KLGDFRSALTNFEKVL 369
LA + YE+A Y+ + P + G QL ++ A+ +F + +
Sbjct: 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 370 EIYPDNCETLKA------------------------LGHIYVQLGQIEKAQELLRKAAKI 405
+I + E K L + ++++A E + +
Sbjct: 400 KINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459
Query: 406 DPRDAQAFIDLGE 418
A GE
Sbjct: 460 GSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 9e-24
Identities = 73/513 (14%), Positives = 142/513 (27%), Gaps = 107/513 (20%)
Query: 258 QRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNL 311
+ F+ + A N LA GQ+ + A + ++ N
Sbjct: 41 RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNY 100
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINK-------PHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y+ G +Y K + G +++ A
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160
Query: 365 FEKVLEIYPDNCETLKALGHIYVQL---GQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
FEK LE P N E L +L + A + LR+A +++P + + L L
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL- 219
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
+ L+++A E+ P +VL + + K E + A + K A
Sbjct: 220 -HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA----- 273
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
+E N + +
Sbjct: 274 --------------------------------------LEYIPNNAYLHCQIG------- 288
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
YR +F+ + + + K + ++ + +A + N S+L
Sbjct: 289 ------CCYRAKVFQVMNLRENGMYGKR--KLLELIGHAVAHLKKADEANDNLFRVCSIL 340
Query: 600 GDLELKNDDWVKAKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 657
L D + +A+ F+ + T L GN+ + ++ E +A H
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ-MKCEDKA----IHHF 395
Query: 658 EKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVW 717
+ ++ L + + +SK+ +
Sbjct: 396 IEGVKIN--------QKSREKEKMKDKLQKIAKMRLSKN--------------GADSEAL 433
Query: 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750
LA + A + + L A
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 98.5 bits (245), Expect = 2e-21
Identities = 68/494 (13%), Positives = 145/494 (29%), Gaps = 74/494 (14%)
Query: 137 LLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPS 194
L+ + ++ E A + A ++ +G+ +LE ++A ++
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 195 CPGA--------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Y +G+L + + + + +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
++ G + +RA + E AL P
Sbjct: 144 WTRLKCGGNQNERAKVCF---------------------------EKALEKK---PKNPE 173
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG----QVQLKLGDFRSAL 362
LA + + ++ + + I + + L +++ + +
Sbjct: 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGE 233
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-- 420
E+ LE P + L++ Y + + +KA ELL+KA + P +A +G
Sbjct: 234 KLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 421 -----------ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESA 467
L+ A LKKA E V + + +H ++E A
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527
F+ L K + + ++ + V++ K
Sbjct: 354 EYYFQKEFSKE-----LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN-QKSRE 407
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
+ L++I ++ L K +A LA + + +Q + E L+
Sbjct: 408 KEKMKDKLQKI---------AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Query: 588 VNGKYPNALSMLGD 601
P+A S G+
Sbjct: 459 SGSLIPSASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 49/480 (10%), Positives = 118/480 (24%), Gaps = 126/480 (26%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH------EFIFPYYGLGQVQLKL 355
K+ LA H KG E A + + I + H + + V +
Sbjct: 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107
Query: 356 GDFRSALTNFEKVLEIYP--------DNCETLKALGHIYVQLG--QIEKAQELLRKAAKI 405
G +KV + ++ E G ++ G Q E+A+ KA +
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF---EKG 462
P++ E + + + +
Sbjct: 168 KPKNP--------------------------------------EFTSGLAIASYRLDNWP 189
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
++A + A+ + ++ L
Sbjct: 190 PSQNAIDPLRQAI------------------------------------RLNPDNQYLKV 213
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L + E+ + L L K D A + ++ +IEL+
Sbjct: 214 LLALKLHKMREEGEEEGE---GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+AL+ +G V
Sbjct: 271 KKALEYIPNNAYLHCQIGCCYRAKVFQVMNL-------------------------RENG 305
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ +++ +L + A + + + + + A Q++ ++ F +
Sbjct: 306 MYGKRKLLEL----IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
V Q+ + + A+ + ++ + + + + + +
Sbjct: 362 SKELTPVAKQLLHLRYGNFQ-LYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAK 420
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 42/284 (14%), Positives = 81/284 (28%), Gaps = 36/284 (12%)
Query: 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589
NL + D V YR + LA + + + ++E + +A ++
Sbjct: 23 NLMEGENSLDD-FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 590 ----------------GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
G Y +G L K K S +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDV 693
G W K E+AK + + + + N +G + +
Sbjct: 142 EG-WTRL----------KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190
Query: 694 SKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTD 749
S++ +++A + + + LA K+ + L K TD
Sbjct: 191 SQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD 248
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793
L A+ + ++ + L +A+ P+N L G
Sbjct: 249 V--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 39/241 (16%), Positives = 79/241 (32%), Gaps = 20/241 (8%)
Query: 566 AAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-- 623
++ + + E N K ++L L+ A E R A +
Sbjct: 29 NSLDDFEDKVFYRTEFQNREFKAT-----MCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 624 DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL---YTRVIVQHTSNLYAANG 680
+ D SL W +A + +++K K + ++ + L G
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143
Query: 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNF---ALAMKMY 737
+ Q + +K F + E + P+ LA + N+ A+
Sbjct: 144 WTRLKCGGNQNERAKVCFEKALEKKP-----KNPEFTSGLAIASYRLDNWPPSQNAIDPL 198
Query: 738 QNCLRKFYYNTDAQILL--YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795
+ +R N ++LL L + E E+ + +K + A+ AP + A +
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR 258
Query: 796 K 796
+
Sbjct: 259 R 259
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 8e-29
Identities = 57/401 (14%), Positives = 120/401 (29%), Gaps = 62/401 (15%)
Query: 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80
P + S + ++ + +F K E +E + + +
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197
Query: 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
+ + Y R EE N+ ++ + G
Sbjct: 198 YK----RSPESYDKADESFTKAARLFEE----QLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
K + A K +E V + + A + +R ++ ++ +AL++ +
Sbjct: 250 KNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV-Y 307
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
G + L +A + F +A +LDPEN+ + LA + + N+ A
Sbjct: 308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENK---FDDCETLFSEA 364
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320
+P A K D
Sbjct: 365 KRKFPEAPEV-------------------------------------PNFFAEILTDKND 387
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---------LGDFRSALTNFEKVLEI 371
++KA Y ++ E+ + Y G+ + K + +F A EK ++
Sbjct: 388 FDKALKQYDLAI-ELEN--KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
P + + L + +Q I++A L ++A + +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-27
Identities = 50/448 (11%), Positives = 134/448 (29%), Gaps = 74/448 (16%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
V+Y+ L + ++ + KA + + + G+ A
Sbjct: 40 VFYSNLSACYVSVGDLKK----VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95
Query: 151 FK---IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--------- 198
+ + + ++ +L + + + + A
Sbjct: 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
Query: 199 ---IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG------ 249
+ + + + + + + D E + L L ++ + A
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215
Query: 250 ---IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
+ ++K ++ A++L + F + + A+ + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP----RVN 271
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
SY +A + D + Y+ ++ +++ YY GQ+ L ++ A +F+
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKAL-KLDS--NNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL------ 420
K E+ P+N L + + + + + L +A + P + E+L
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
Query: 421 -------------------------------ISSDTGAALDAFKTARTLLKKAGEEVP-- 447
++ F A LL+KA + P
Sbjct: 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448
Query: 448 IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ + + ++ + + A F+++
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLFEESA 476
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 9e-25
Identities = 59/391 (15%), Positives = 130/391 (33%), Gaps = 42/391 (10%)
Query: 69 PEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP 128
+ ++ + ER A+ G I+T E L+TQ + + P
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE---LSTQPAKERKDKQENLP 159
Query: 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------QACVEFNR--G 176
S + E + + EAD++ + L +A F +
Sbjct: 160 SV--TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR 217
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV- 235
+ + L+ ++ ++ G+ ++ A + ++A++L P V + +
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISL-EHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275
Query: 236 -ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
AL + D + +A ++ + + F + + + A
Sbjct: 276 MALIMADRNDSTEY-----YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330
Query: 295 LAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354
+ P Y LA + + ++ + + + P E ++
Sbjct: 331 KELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFP-EAPEVPNFFAEILTD 384
Query: 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ---------LGQIEKAQELLRKAAKI 405
DF AL ++ +E+ + + + + +A LL KA+K+
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444
Query: 406 DPRDAQAFIDLGELLISS-DTGAALDAFKTA 435
DPR QA I L ++ + D A+ F+ +
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 75/506 (14%), Positives = 157/506 (31%), Gaps = 50/506 (9%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ + + + Y+ A YY ++ E+ + F Y L + +GD +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKEDPVF---YSNLSACYVSVGDLKKV 58
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA-KIDPRDAQAFIDLGELL 420
+ K LE+ PD + L LG+ A L + D DA L L
Sbjct: 59 VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVL-----------NNIGVIHFEKGEFESAHQ 469
+ F T E F + E
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178
Query: 470 SFKDAL-GDGIWLTLLDSKTKTYVIDASASMLQF-KDMQLFHRFENDGNHV-ELPWNKVT 526
++ ++ D + L + K + F K +LF + N +L
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L + +D + A + + + V++Y+ +A I RN+ ++AL
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAI-ELFPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
K++ + G + ++ +A + F A + D ++ + + L E
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLAC-----LAYRE 351
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
+ + + L++ + N +L +K FD + + E +
Sbjct: 352 NK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 707 GSVFVQMPDVWINLAHVY---------FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
++ +++ +A + NF A + + + Q + LA
Sbjct: 404 -----KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLA 456
Query: 758 RTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ + E + + LA +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTM 482
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-23
Identities = 63/468 (13%), Positives = 133/468 (28%), Gaps = 44/468 (9%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G + + A+ + LE+ D L YV +G ++K E+ KA +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463
+ P ++ + A+ IE + + +
Sbjct: 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS--IEPMLERNLNKQAMSK 125
Query: 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523
+ A L+ +K + + S+ F F+ +
Sbjct: 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA--SFFGIFKPELT------- 176
Query: 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583
N E ++ L + + KA + ++ N
Sbjct: 177 ----FANYDESNEA-----DKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227
Query: 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643
E K+ K +L G + +D + A E + A + +SY Y A +
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY--------IYMALI 279
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
++ + + + + ++N G + +D + F + +E
Sbjct: 280 MADRN-------DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ +I LA + + + F ++ RKF ++ + A +
Sbjct: 333 LDPEN-----IFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDK 385
Query: 764 EQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 811
+ K AI L + + K + T T E
Sbjct: 386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-21
Identities = 60/479 (12%), Positives = 139/479 (29%), Gaps = 73/479 (15%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
KG + + A + LE D V + + G +E +AL+
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALE 67
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVALAVMDLQANEAAG 249
+ P + L LG+ A +L D + L E
Sbjct: 68 LKPDYSKVL-LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML--------ERNL 118
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
++ M K++ F L+ + + T++A S++
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA----------SFF 168
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEK 367
+ + + +Y+++ + ++ ++ Y F L +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTG 426
++ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDST 287
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
+ F A LK V + G ++F ++ A + F A
Sbjct: 288 EYYNYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAK----------- 331
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
E D ++ + + + +
Sbjct: 332 -------------------------ELDPENIFPYIQLACLAYRENKFDDCETL------ 360
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605
+ K+ + + A I +N+ +++ + A+++ K + L K
Sbjct: 361 -FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 3e-20
Identities = 75/503 (14%), Positives = 156/503 (31%), Gaps = 74/503 (14%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
AL + F +Y D++++Y AL++ + C +G L K +
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--PVFYSNLSACYVSVGDLKKVVEM 61
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------PYCAMAL 271
+AL+L P+ + L+ A +G+ K A A
Sbjct: 62 STKALELKPDYSKVLLRRAS----------ANEGLGKFADAMFDLSVLSLNGDFNDASIE 111
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHG-------------------PTKSHSYYNLA 312
L + L E+ + A T S++ +
Sbjct: 112 PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--LGDFRSALTNFEKVLE 370
+ + +Y+++ + ++ ++ Y F L + +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAAL 429
+ +L+ G A E ++KA ++ P ++I + ++ +D+
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYY 290
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
+ F A LK V + G ++F ++ A + F A L
Sbjct: 291 NYFDKA---LKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKA------KELDPENIF 339
Query: 490 TYVIDASA--SMLQFKD-MQLFHR-FENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 545
Y+ A +F D LF E+P +L + + +
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQ----- 394
Query: 546 VLYRLILFKYQDYVDAYLRLAAI---------AKARNNLQLSIELVNEALKVNGKYPNAL 596
Y L + Y+ +A + N + L+ +A K++ + A
Sbjct: 395 --YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452
Query: 597 SMLGDLELKNDDWVKAKETFRAA 619
L ++L+ +D +A F +
Sbjct: 453 IGLAQMKLQQEDIDEAITLFEES 475
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 3e-19
Identities = 57/586 (9%), Positives = 138/586 (23%), Gaps = 138/586 (23%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G ++ + A + + AL+L +
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELKED---------------------------------- 38
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ + L+ + G V +++ AL + P S A + G +
Sbjct: 39 ----PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDYSKVLLRRASANEGLGKFAD 91
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A + I P + + + + + +
Sbjct: 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151
Query: 384 HI-------------YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA--- 427
+ + + E ++ + D +L + S A
Sbjct: 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211
Query: 428 ---ALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482
A F+ + + L + G+ F K + AH+ K A+
Sbjct: 212 FTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI------- 264
Query: 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542
L + +Y+ ++ + E +
Sbjct: 265 ELFPRVNSYI------------------------------YMALIMADRNDSTEYYNY-- 292
Query: 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
+ L + Y + N + + ++A +++ + L L
Sbjct: 293 -----FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347
Query: 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKE 662
+ + + + F A + L ++ +KA +
Sbjct: 348 AYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAE-----ILTDKND--------FDKALK 393
Query: 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--------- 713
Y I G ++ + + + EA +
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-ENFIEA------TNLLEKASKLDP 446
Query: 714 --PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
I LA + Q + A+ +++ + + A
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 38/271 (14%), Positives = 75/271 (27%), Gaps = 8/271 (2%)
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L + + A Y L +D V Y L+A + +L+ +E+
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+AL++ Y L + A S D D+ L A
Sbjct: 63 TKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQA 122
Query: 643 LRNEKRAPKLEATHLEKAKEL--YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700
+ K T EL + + + + +++ + +
Sbjct: 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182
Query: 701 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF-----YYNTDAQILLY 755
EA + + A +F A ++++ L K A L +
Sbjct: 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242
Query: 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786
+ + + +AI L P +
Sbjct: 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 7e-28
Identities = 69/683 (10%), Positives = 158/683 (23%), Gaps = 83/683 (12%)
Query: 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162
R E A + ++D + +G + + ++ L V
Sbjct: 133 ARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQV 192
Query: 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
A+ + L +A + P+ AI + L + + +
Sbjct: 193 VAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAI-ASHDGGKQALETMQRLLPVLCQ 251
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A L P+ V A+ G ++ +E +QR +
Sbjct: 252 AHGLPPDQVVAI----------ASNIGGKQALETVQRLLPVL------------------ 283
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342
A +T P + + + + ++ + + +
Sbjct: 284 ---------CQAHGLT---PDQVVAIASHGGGKQALETVQRLLPVL---CQAHGLTPDQV 328
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ L + L + + PD + + G L +++ +L +A
Sbjct: 329 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQA 388
Query: 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFE 460
+ P A G AL+ + +L +A P + + +
Sbjct: 389 HGLTPDQVVAIASNGGKQ-------ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQA 441
Query: 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520
+ G L ++ QL L
Sbjct: 442 LETVQRLLPVLCQTHG------LTPAQVVAIASHDGGKQALETVQQLLPVLCQA---HGL 492
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
++V + + + + + D V A +A +Q +
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
++ +A + A++ G + + + A A S
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH-GLTQVQVVAIASNIG---- 607
Query: 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700
K +++ + + + + A + Q
Sbjct: 608 ---------GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQ 658
Query: 701 VQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760
+ A + + +
Sbjct: 659 AHGLTP-----DQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTQEQVVAIASNNGGK 711
Query: 761 YEAEQWQDCKKSLLRAIHLAPSN 783
E Q L +A L P
Sbjct: 712 QALETVQRLLPVLCQAHGLTPDQ 734
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-22
Identities = 39/368 (10%), Positives = 96/368 (26%), Gaps = 22/368 (5%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ + + A V+Q D V A+ +
Sbjct: 448 LLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGK 507
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
L +A + P AI G + L + + +A L P+ V
Sbjct: 508 QALATVQRLLPVLCQAHGLTPDQVVAIA-SNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 233 ALVAL--AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
A+ + L+ + + + +A + +A+ + +
Sbjct: 567 AIASNGGGKQALETVQRL-----LPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
A +T P + + + + ++ + + + + G
Sbjct: 622 LCQAHGLT---PAQVVAIASHDGGKQALETVQRLLPVLCQAH-GLT--PDQVVAIASNGG 675
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ L + L + + + + + L +++ +L +A + P
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQV 735
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAH 468
A G AL+ + +L +A P + + + +
Sbjct: 736 VAIASNGGGK------QALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLL 789
Query: 469 QSFKDALG 476
G
Sbjct: 790 PVLCQDHG 797
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 77.4 bits (190), Expect = 2e-14
Identities = 41/454 (9%), Positives = 96/454 (21%), Gaps = 73/454 (16%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ L + L + + P + + L +++ +L +A
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHG 254
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A AL+ + +L +A P + + + G
Sbjct: 255 LPPDQVVAIASNIGGK------QALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALE 308
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
+ A L
Sbjct: 309 TVQRLLPVLCQAH-------------------------------------------GLTP 325
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
++V + + + + + D V A +A +Q + ++
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
+A + A++ G +A ET + + A
Sbjct: 386 CQAHGLTPDQVVAIASNGG--------KQALETVQRLLPVLCQAHGLTP------DQVVA 431
Query: 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQ 702
+ + K +++ + + + + A + Q
Sbjct: 432 IASHDGG-KQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH 490
Query: 703 EAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762
+ + A + + +
Sbjct: 491 G-----LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQA 543
Query: 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
E Q L +A L P G Q
Sbjct: 544 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 577
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 2e-13
Identities = 43/363 (11%), Positives = 89/363 (24%), Gaps = 33/363 (9%)
Query: 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
E +A + + G A V++ ++ V A+
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ L +A + P AI G + L + + +A L
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAI-ASNGGGKQALETVQRLLPVLCQAHGLT 765
Query: 228 PENVEAL-----------------------VALAVMDLQA-NEAAGIRKGMEKMQRAFEI 263
P V A+ L + + A G ++ +E +QR +
Sbjct: 766 PAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPV 825
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKG 319
+ + L V P + + + +
Sbjct: 826 LCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALE 885
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
++ ++ + + G Q L + L + + PD +
Sbjct: 886 TVQRLLPVL---CQDHGLTLDQVVAIASNGGKQA-LETVQRLLPVLCQDHGLTPDQVVAI 941
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439
+ L +++ +L + + P A G A L A L
Sbjct: 942 ASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALAAL 1001
Query: 440 KKA 442
Sbjct: 1002 TND 1004
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-27
Identities = 55/322 (17%), Positives = 106/322 (32%), Gaps = 24/322 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W+ + Q + V + + E + P + G ++ F + A+
Sbjct: 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL 93
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAA 248
P A + +G+ + + A A QR L+L P N++AL+ALAV + + A
Sbjct: 94 QDPGDAEAWQF-LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---------N 299
E ++ + P + T + + V N
Sbjct: 153 -----CEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L +H G++ +A + A++ +P E + LG
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT--VRP-EDYSLWNRLGATLANGDRSE 264
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
A+ + + LEI P + LG + LG +A A + +
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Query: 420 LISSDTGAALDAFKTARTLLKK 441
+ +G A + A +L+ +
Sbjct: 325 I----SGNIWAALRIALSLMDQ 342
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-20
Identities = 59/403 (14%), Positives = 120/403 (29%), Gaps = 66/403 (16%)
Query: 252 KGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALAV----TNHGPTKSH 306
+ ++ E + +A + + Q + + T +
Sbjct: 7 RAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWP 66
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ +GD L+ A++ + P + LG Q + + ++A+ +
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG-DAEAWQFLGITQAENENEQAAIVALQ 123
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS---- 422
+ LE+ P+N + L AL Y + A E L+ K +P+ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 423 SDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478
S + + + L +A G+ + ++ +GV+ GEF A +F AL
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL--- 240
Query: 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQ 537
L WN++ L N R E
Sbjct: 241 ---------------------------------TVRPEDYSL-WNRLGATLANGDRSEEA 266
Query: 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597
+ Y L ++ + L + ++ AL + K N
Sbjct: 267 VEA-------YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319
Query: 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
+ + + W R A D + + +LG+ +
Sbjct: 320 VPHP-AISGNIW----AALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 56/395 (14%), Positives = 113/395 (28%), Gaps = 60/395 (15%)
Query: 33 LKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
A ++ + W + E+ + + + E + + +
Sbjct: 9 KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ G K+ + + A D + W G + A A +
Sbjct: 69 F-EEGLKRLKEGDLPV----TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYK-- 209
LE +N+ AL+ A N D+ E K ++ +P ++ +
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM 183
Query: 210 ------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
L ++ + A + + ++ DLQ + + RA +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDP-------DLQTGLGV-LFHLSGEFNRAIDA 235
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
+ AL V P + L + + E+
Sbjct: 236 F---------------------------NAALTVR---PEDYSLWNRLGATLANGDRSEE 265
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
A Y ++ EI +P FI Y LG + LG +R A++NF L + + +
Sbjct: 266 AVEAYTRAL-EI-QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322
Query: 384 -----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+I+ L + + D
Sbjct: 323 PAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 4e-15
Identities = 45/371 (12%), Positives = 101/371 (27%), Gaps = 47/371 (12%)
Query: 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
++ + + ++ + Y P + + G +LK GD +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYY---FHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
E + P + E + LG + + A L++ ++ P + +A + L
Sbjct: 88 MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT--- 144
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482
+ A LK ++ P ++ N + G
Sbjct: 145 ---NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG------ 195
Query: 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542
V + G+ ++ + L L +
Sbjct: 196 ---------VKELYLEAAHQN-----------GDMID-----PDLQTGLGVLFHLSGEFN 230
Query: 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
A + L + + RL A + + ++E AL++ + + LG
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS 290
Query: 603 ELKNDDWVKAKETFRAA-----SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHL 657
+ + +A F A + + +S W + P+L
Sbjct: 291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350
Query: 658 EKAKELYTRVI 668
++ R
Sbjct: 351 LGDLDVLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 53/355 (14%), Positives = 99/355 (27%), Gaps = 32/355 (9%)
Query: 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND-GNHVEL 520
EFE A + + W + + + + + ++ E H E
Sbjct: 3 MEFERAKAAVESDTE--FWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P+ F + D + + + +A+ L N Q +I
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640
+ L++ AL L A E + + K Y +
Sbjct: 121 ALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKG---- 175
Query: 641 AALRNEKRAPKLEATH--LEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEKGQFDVSKD 696
+ +R K LE KELY Q+ + G GV+ G+F+ + D
Sbjct: 176 -SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID 234
Query: 697 LFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTDA 750
F +W L A++ Y L + YN
Sbjct: 235 AFNAALTVRPED-----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN--- 286
Query: 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKT 805
L + +++ + L A+ L + + A+ + L+
Sbjct: 287 -----LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 51/420 (12%), Positives = 95/420 (22%), Gaps = 94/420 (22%)
Query: 355 LGDFRSALTNFEKVLEIYPD--------NCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+F A E E + + + +++ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 407 PRDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGE 463
+D + G + D + + A + P E +G+ E
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFM-------EAAILQDPGDAEAWQFLGITQAENEN 114
Query: 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523
++A + + L E N+++
Sbjct: 115 EQAAIVALQRCL------------------------------------ELQPNNLK---- 134
Query: 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583
L LA A + + + Y + S +
Sbjct: 135 ---ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191
Query: 584 EALKVNGKYPNALSM------------LGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631
V Y A LG L + ++ +A + F AA +D
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPEDYSLW 250
Query: 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQF 691
LG L N R E+A E YTR + + + G+ G +
Sbjct: 251 NRLGA-----TLANGDR--------SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 692 DVSKDLFTQV-------QEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744
+ F + ++W L L L
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-26
Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 66/375 (17%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQLLL 139
L+A + LG T ++ S+ +G+ L
Sbjct: 9 LSASAENVSSLGLGSGGG---------GTNSHDGNSQQGSGSDGGSSMCLELALEGERLC 59
Query: 140 AKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRALQVHP 193
G+ + F+ ++A +++ L LG A F G Y+ +++++K L +
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAY--FYLGDYNKAMQYHKHDLTLAK 117
Query: 194 SCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE---------------NV-- 231
S A G +G +G+ +A +R L L + NV
Sbjct: 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177
Query: 232 ---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHFFFTG 282
+ L + + + +E Q ++ A L N ++ G
Sbjct: 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLG 237
Query: 283 QHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS---VKEIN 336
+ + L + + + NL S+ G +E A +Y + E+
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLG 390
+ Y LG L +F +A+ + L I +LG+ + +G
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357
Query: 391 QIEKAQELLRKAAKI 405
E+A + + ++
Sbjct: 358 GHERALKYAEQHLQL 372
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-26
Identities = 62/387 (16%), Positives = 119/387 (30%), Gaps = 74/387 (19%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ +G G + S + L + N G + F++ A+
Sbjct: 17 SSLGLGSGGGGTNSHDGNSQQGS-GSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75
Query: 190 QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
Q AI +G + LG KA Q + L
Sbjct: 76 QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------------- 114
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT----NHGP 302
+ ++ A + L N G+ E L + +
Sbjct: 115 ----------LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-L 163
Query: 303 TKSHSYYNLARSYHSKGDY-----------------EKAGLYYMAS---VKEINKPHEFI 342
++ + YNL YH+KG + +A +Y + ++++
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
LG LGDF++A+ + ++ L I LG+ ++ LGQ E A
Sbjct: 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283
Query: 397 ELLRKAAKI------DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI- 448
E ++ + +AQ+ LG + A++ + ++ G+ +
Sbjct: 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDAL 475
++G H G E A + + L
Sbjct: 344 RACWSLGNAHSAIGGHERALKYAEQHL 370
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 32/190 (16%), Positives = 59/190 (31%), Gaps = 15/190 (7%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGD 357
G S S S G + + + G+ GD
Sbjct: 4 GSMSSLSASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGD 63
Query: 358 FRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKI-----DPR 408
R+ + F+ ++ ++ LG+ Y LG KA + + + D
Sbjct: 64 CRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123
Query: 409 D-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFE 465
A++ +LG L A + TL ++ G+ + L N+G ++ KG+
Sbjct: 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183
Query: 466 SAHQSFKDAL 475
K
Sbjct: 184 GQRNPGKFGD 193
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-08
Identities = 58/462 (12%), Positives = 121/462 (26%), Gaps = 129/462 (27%)
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLR 400
L LG + + + C L G G +
Sbjct: 13 AENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQ 72
Query: 401 KAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 460
A + D + + + +G +F
Sbjct: 73 AAIQAGTEDLRT---------------------LSAIY-------------SQLGNAYFY 98
Query: 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVEL 520
G++ A Q K LTL ++ + +
Sbjct: 99 LGDYNKAMQYHKHD------LTL---------------------------AKSMNDRLGE 125
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
NL L+ + A++ L + D + +A NL
Sbjct: 126 ----AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL----SEGRALYNLGN--- 174
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGN- 636
GK+ + + + +A E ++ + + + GN
Sbjct: 175 ----VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR-ACGNL 229
Query: 637 ---W----NYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT-SNLYAANGAGVVLAEK 688
+ ++ AA+ + + L A+E R + SNL G
Sbjct: 230 GNTYYLLGDFQAAIEHHQER-------LRIAREFGDRAAERRANSNL------GNSHIFL 276
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL- 741
GQF+ + + + + + ++ V++ + +L + Y F A++ + L
Sbjct: 277 GQFEDAAEHYKR-----TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331
Query: 742 --RKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
++ A+ L H + K + + LA
Sbjct: 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 41/273 (15%), Positives = 85/273 (31%), Gaps = 28/273 (10%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR---QAF 220
A F Y++++E + + + P +C Y+L + A+ + +
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNR-RAVCYYELAKYDLAQKDIETY 63
Query: 221 QRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278
+ M + A +++ Q A + + ++F
Sbjct: 64 FSKVNATKAKSADFEYYGKILMKKGQDSLA-----IQQYQAAVDRDTTRLDMYGQIGSYF 118
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ G L Q E + T T +Y L ++Y+ +Y KA ++ + E+
Sbjct: 119 YNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKADSSFVKVL-ELKP- 173
Query: 339 HEFIFPYYGLGQVQLKLGD---FRSALTNFEKVLEIYPDNCETLKA--------LGHIYV 387
Y + A +EK++E+ K + + Y
Sbjct: 174 -NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
KA + +DP + +A L L
Sbjct: 233 INRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 3e-22
Identities = 38/304 (12%), Positives = 76/304 (25%), Gaps = 44/304 (14%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
K E A + +NK + P + + + + A +
Sbjct: 6 EFRYADFLFKNNNYAE----AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 153 IVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
+ + +G+ S +++ Y+ A+ + IG Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG-QIGSYFYN 120
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
G A Q ++ ++ + + L + A + E+ P
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA-----DSSFVKVLELKPNI 175
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327
+ + A + LA K YEK +
Sbjct: 176 YIGYLWRARANAAQDPD----------------------TKQGLA-----KPYYEKL-IE 207
Query: 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387
A K E I + D A ++ +L + P N + + L
Sbjct: 208 VCAPGGAKYKD-ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 388 QLGQ 391
Sbjct: 267 HHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 28/215 (13%), Positives = 62/215 (28%), Gaps = 22/215 (10%)
Query: 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKSHSYYNLARSYHSKGDYEKAG 325
A+ F + A+ V N + Y A Y+ Y+ A
Sbjct: 5 VEFRYADFLFKNNNY-------AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385
++N + G++ +K G A+ ++ ++ + +G
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEE 445
+ G A + + K + D + F +LG+ + A + K E
Sbjct: 118 FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY------YYNKEYVKADSSFVKVLEL 171
Query: 446 VP--IEVLNNIGVIHFEKG---EFESAHQSFKDAL 475
P + + + A ++ +
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 38/291 (13%), Positives = 76/291 (26%), Gaps = 65/291 (22%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ---ELLRK 401
+ K ++ A+ F K+ ++ Y +L + + AQ E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 402 AAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHF 459
+ F G++L A + A + +++ IG +
Sbjct: 66 KVNATKAKSADFEYYGKIL------MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY 119
Query: 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519
KG F A Q + + +
Sbjct: 120 NKGNFPLAIQYMEKQI------------------------------------RPTTTDPK 143
Query: 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL---Q 576
V + L + + V A + +L + YL A A++
Sbjct: 144 -------VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQG 196
Query: 577 LSIELVNEALKV--------NGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
L+ + ++V + A + N D VKA ++
Sbjct: 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 37/282 (13%), Positives = 70/282 (24%), Gaps = 52/282 (18%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY---- 92
D+ A FK +E F ++ + R L Y
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA------KKYNSPYIYNRRAVCYYELAKYDLAQ 57
Query: 93 -------------------YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVG 133
+ Y GKI K+ + A Q Y A D +
Sbjct: 58 KDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL----AIQQYQAAVDRDTTRLDMYGQ 113
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G KG A + + + + Y + + + L++ P
Sbjct: 114 IGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 194 SCPGAIRLGIGLCRYKLGQLGK---ARQAFQRALQLDPEN--------VEALVALAVMDL 242
+ L K A+ +++ +++ +EA +A
Sbjct: 174 NIYIGY-LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232
Query: 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ K + + P A++ L H
Sbjct: 233 INRD---KVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 31/228 (13%), Positives = 64/228 (28%), Gaps = 23/228 (10%)
Query: 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
D R A NN +IE+ N+ P + + + A++
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63
Query: 620 SDATDGKDSYATLSLGNWNYFA-ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA 678
+ + + ++ Y+ L + + A + Y + + T+ L
Sbjct: 64 FSKVNATKAKSA----DFEYYGKILMKKGQ--------DSLAIQQYQAAVDRDTTRLDMY 111
Query: 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738
G KG F ++ + + P V+ L Y+ + A +
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFV 166
Query: 739 NCLRKFYYNTDAQILLYLARTHYEAEQWQDC---KKSLLRAIHLAPSN 783
L L+ AR + + K + I +
Sbjct: 167 KVLELKPNIYIG--YLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 31/324 (9%), Positives = 62/324 (19%), Gaps = 63/324 (19%)
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFK 433
N + + +A E+ K + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 434 TARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491
T G I +KG+ A Q ++ A+
Sbjct: 62 T----YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV---------------- 101
Query: 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551
+ D ++ + + + A
Sbjct: 102 --------------------DRDTTRLD-------MYGQIGSYFYNKGNFPLAIQYMEKQ 134
Query: 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611
+ + L + + L++ D K
Sbjct: 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Query: 612 ---AKETFRAA--SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
AK + A G L N + KA +
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD--------KVKADAAWKN 246
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQ 690
++ +N A +G + L
Sbjct: 247 ILALDPTNKKAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 39/282 (13%), Positives = 79/282 (28%), Gaps = 31/282 (10%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI---ELVN 583
V F A L + ++ A ++ + K + Y R A L+ E
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64
Query: 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAAL 643
+ G + +K A + ++AA D D +G+
Sbjct: 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-DTTRLDMYGQIGS-----YF 118
Query: 644 RNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQE 703
N+ A + + I T++ G ++ + F +V E
Sbjct: 119 YNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170
Query: 704 AASGSVFVQMPDVWINLAHVYFAQGN---FALAMKMYQNCLR------KFYYNTDAQILL 754
+ ++ A AQ LA Y+ + Y + +
Sbjct: 171 LKP-----NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Query: 755 YLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
Y+A + + + L P+N + ++
Sbjct: 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 16/247 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +++E Y +A ++H Y+ G+ A A++ E
Sbjct: 16 YKARQFDEAIEHYNKAWELHKDI--TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73
Query: 233 A--LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+++ + + + +++ E Y ++ + A+ +
Sbjct: 74 DYKVISKSFARIGNAYHK-----LGDLKKTIEYYQK-SLTEHRTADILTKLRNAEKELKK 127
Query: 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350
E V P K+ + Y +K D+ A Y +K P E Y
Sbjct: 128 AEAEAYVN---PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-P-EDARGYSNRAA 181
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
KL F A+ + K +E P+ + + + A E L A D
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
Query: 411 QAFIDLG 417
Sbjct: 242 NGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 24/268 (8%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+G + ++A + E +D L +A E+ +G Y ++ A++
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL-VALAVMDLQANEAAG 249
++ I ++G ++ ++ +++ A + L+ E
Sbjct: 67 QGREMRADYKV-ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE- 124
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG----PTKS 305
++K + + P A +F A+ P +
Sbjct: 125 ----LKKAEAEAYVNPEKAEEARLEGKEYFTKSDW-------PNAVKAYTEMIKRAPEDA 173
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
Y N A + + +A ++ E + F+ Y Q+ + ++ SAL
Sbjct: 174 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDP--NFVRAYIRKATAQIAVKEYASALETL 230
Query: 366 EKVLEIYPDNCE--TLKALGHIYVQLGQ 391
+ + + + + +Y + Q
Sbjct: 231 DAARTKDAEVNNGSSAREIDQLYYKASQ 258
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 9e-19
Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 56/302 (18%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + + ++ +++A +Y + E++K + + + G++ +
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAW-ELHKDITY---LNNRAAAEYEKGEYET 56
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A++ +E + K + + ++G L+K + + ++L
Sbjct: 57 AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADIL 115
Query: 421 ISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478
L + + P E G +F K ++ +A +++ + +
Sbjct: 116 ------TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI--- 166
Query: 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI 538
+ N+ L L E I
Sbjct: 167 ---------------------------------KRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 539 HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598
D + K ++V AY+R A A ++E ++ A + + N S
Sbjct: 194 AD-------CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246
Query: 599 LG 600
Sbjct: 247 RE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 42/274 (15%), Positives = 77/274 (28%), Gaps = 53/274 (19%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G YK Q +A + + +A +L ++ L A + + A
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAA----------AEYEKGEYETAIST 60
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A+ G Y +++S+ G+
Sbjct: 61 L---------------------------NDAVEQ---GREMRADYKVISKSFARIGNAYH 90
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+++ K + + KL + L E + P+ E + G
Sbjct: 91 KLGDLKKTIEYYQKSLT----EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAG 443
Y A + + K P DA+ + + L A L +F A KA
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL------AKLMSFPEAIADCNKAI 200
Query: 444 EEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
E+ P + E+ SA ++ A
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 28/214 (13%)
Query: 50 YFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK----IET 101
+++G+ + +E+G E+ Y +G Y LG IE
Sbjct: 48 EYEKGEYETAISTLNDAVEQG--REMRADY----KVISKSFARIGNAYHKLGDLKKTIEY 101
Query: 102 KQREKEEH-----------FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
Q+ EH + + ++ + +G+ K + A A
Sbjct: 102 YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ +++ ++ +A + +++ +A++ P+ A IR +
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT--AQIA 219
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ + A + A D E A + L
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 26/275 (9%), Positives = 54/275 (19%), Gaps = 83/275 (30%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
G K F A+ ++ K E++ D L + G+ E A L A +
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
+ I G
Sbjct: 67 QGREMRADY--------------------------------------KVISKSFARIGNA 88
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
K + K+ T
Sbjct: 89 YHKLGDLKKTI-------EYYQKSLTE------------------------------HRT 111
Query: 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584
+L L +++ + + + +++ +++ E
Sbjct: 112 ADILTKLRNAEKELKK-------AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164
Query: 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+K + S K + +A A
Sbjct: 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 199
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 23/247 (9%), Positives = 59/247 (23%), Gaps = 34/247 (13%)
Query: 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
AA + + +I +N+A++ + ++ + + +
Sbjct: 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98
Query: 620 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679
+ + L + EK + + A
Sbjct: 99 IEYYQKSLTE-------HRTADILTKLRN--------AEKELKKAEAEAYVNPEKAEEAR 143
Query: 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739
G K + + +T++ + A + N A +F A+
Sbjct: 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 740 CLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793
+ + Y A +++ ++L A +
Sbjct: 199 AIEKDPNFVRAYIR--------KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Query: 794 MQKFSAS 800
+ AS
Sbjct: 251 QLYYKAS 257
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 34/323 (10%), Positives = 81/323 (25%), Gaps = 76/323 (23%)
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508
+ G ++ +F+ A + + A
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAW--------------------------------- 32
Query: 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E + L N+ + I + + ++ Y ++
Sbjct: 33 ---ELHKDITYL-NNRAAAEYEKGEYETAIST-------LNDAVEQGREMRADYKVISKS 81
Query: 569 AKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRAASDA 622
N + + + ++ K + L+ L + E K + A +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAE-------KELKKAEAEA-Y 133
Query: 623 TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682
+ + + G + A + YT +I + + +
Sbjct: 134 VNPEKAEEARLEGK-----EYFTKSD--------WPNAVKAYTEMIKRAPEDARGYSNRA 180
Query: 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
LA+ F + + E +I A A +A A++
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 743 KFYYNTDAQILLYLARTHYEAEQ 765
K + + + +Y+A Q
Sbjct: 236 KDAEVNNGSSAREIDQLYYKASQ 258
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 27/314 (8%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + Q ++ + + + +++ ++ Q P A R
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+GL + + + G A A A LDP+++ ALAV + AA + ++
Sbjct: 61 -LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA-----LASLRA 114
Query: 260 AFEIYPYCAMALNYLAN--------HFFFTGQHFLVEQLTETALAVTNH----GPTKSHS 307
P + + F + + P +
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +L Y+ +Y+ A +V+ +P + + LG + AL + +
Sbjct: 175 HASLGVLYNLSNNYDSAAANLRRAVE--LRP-DDAQLWNKLGATLANGNRPQEALDAYNR 231
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA 427
L+I P + + Y + Q + A + L +A + + T +
Sbjct: 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA----TRS 287
Query: 428 ALDAFKTARTLLKK 441
D F+ ++ +
Sbjct: 288 MWDFFRMLLNVMNR 301
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-19
Identities = 33/357 (9%), Positives = 79/357 (22%), Gaps = 76/357 (21%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
G+ L + A + + W G +
Sbjct: 25 MEEGLSMLKLANLA-----------EAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-------- 198
A A D ++ A N + +L + L P
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 199 ------IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
+ + R AL+++P + + +L V +
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV----------LYN 183
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A A+ + P + + L
Sbjct: 184 LSNNYDSAAANL---------------------------RRAVELR---PDDAQLWNKLG 213
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ + ++A Y ++ +IN P ++ Y + + + A + + +
Sbjct: 214 ATLANGNRPQEALDAYNRAL-DIN-P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270
Query: 373 PDNCETLKALG-----HIYVQLGQIEKAQELLRKAAKIDPRDAQAF---IDLGELLI 421
++ + ++ + F L +L+
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQSMLL 327
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-19
Identities = 59/303 (19%), Positives = 99/303 (32%), Gaps = 39/303 (12%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235
G + Y + GL KL L +A AF+ Q PE EA
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENP-MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWR 59
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295
+L + NE + + A + P LA AL
Sbjct: 60 SLGLT-QAENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA-------NAAL 109
Query: 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355
A YE+ G + + +I+ +
Sbjct: 110 A-----------SLRAWLLSQP--QYEQLGSVNLQADVDIDDLN-----VQSEDFFFAAP 151
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
++R T LE+ P++ + +LG +Y + A LR+A ++ P DAQ +
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK 211
Query: 416 LGELLI-SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFK 472
LG L + ALDA+ A + P + V+ N+ V + +++ A +
Sbjct: 212 LGATLANGNRPQEALDAYNRALDIN-------PGYVRVMYNMAVSYSNMSQYDLAAKQLV 264
Query: 473 DAL 475
A+
Sbjct: 265 RAI 267
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 24/173 (13%), Positives = 45/173 (26%), Gaps = 22/173 (12%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ--------YYNKAS 121
+D V AL V +T
Sbjct: 83 MLDPKDIAV-------HAALAVSHTNEHNAN----AALASLRAWLLSQPQYEQLGSVNLQ 131
Query: 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181
+ + A E + + LE + ++ + Y +
Sbjct: 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSA 191
Query: 182 LEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+RA+++ P +LG L + +A A+ RAL ++P V
Sbjct: 192 AANLRRAVELRPDDAQLWNKLGATL--ANGNRPQEALDAYNRALDINPGYVRV 242
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 40/301 (13%), Positives = 85/301 (28%), Gaps = 27/301 (8%)
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
N + E P + + LA L E A++ + + + +A+ L
Sbjct: 15 NNPYMYHENPMEEGLSMLKLANLAE-------AALAFEAVCQAAPEREEAWRSLGLTQAE 67
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 630
L+I +N A ++ K + L + A + RA + +
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690
+ + + + + L + + ++ GV+
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN 187
Query: 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KF 744
+D + + E +W L A+ Y L +
Sbjct: 188 YDSAAANLRRAVELRP-----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242
Query: 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK 804
YN +A ++ Q+ K L+RAI++ T +A + +
Sbjct: 243 MYN--------MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294
Query: 805 T 805
Sbjct: 295 L 295
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-24
Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 15/255 (5%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ V + + + A + +GL + G +A+
Sbjct: 4 SHHHHHHSSGLVPRGSHMGDQN---PLKTDKGRDEARDA-YIQLGLGYLQRGNTEQAKVP 59
Query: 220 FQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
++AL++DP + +A ALAV + A E+ ++A A LN
Sbjct: 60 LRKALEIDPSSADAHAALAVVFQTEMEPKLA-----DEEYRKALASDSRNARVLNNYGGF 114
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ ++ Q A T + P +S + NL +A Y+ S+ +N+
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMKKPAQAKEYFEKSL-RLNR 172
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
+ + K ++ A ++ + N +L + + A
Sbjct: 173 --NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 398 LLRKAAKIDPRDAQA 412
+ ++ P +
Sbjct: 231 YGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 47/300 (15%), Positives = 85/300 (28%), Gaps = 53/300 (17%)
Query: 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
G + H +++ ++ +K E Y LG L+ G+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGDQN------PLKTDKGRDEARDAYIQLGLGYLQRGNTEQ 55
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
A K LEI P + + AL ++ + + A E RKA D R+A+ + G L
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115
Query: 421 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479
A A + V N+G++ + + A + F+ +L
Sbjct: 116 YEQKRYEEAYQRLLEA---SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL---- 168
Query: 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539
+ N V +A LL +
Sbjct: 169 --------------------------------RLNRNQPS-------VALEMADLLYKER 189
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
+ V A Y L + L +AK + + + ++
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 19/237 (8%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q K + ++ G L +G EQA + LE D + A A V
Sbjct: 22 GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVF 81
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIR-LGIGLCRYKLGQLGKARQAFQRALQ--LDPE 229
+ E Y++AL + G L + + +A Q A Q L PE
Sbjct: 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY--EQKRYEEAYQRLLEASQDTLYPE 139
Query: 230 NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289
L ++ LQ + A + E +++ + +A+ + ++ Q
Sbjct: 140 RSRVFENLGLVSLQMKKPA---QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
+ G + S R D + A Y + + ++P
Sbjct: 197 YYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--------LYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 34/257 (13%)
Query: 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYE 81
+ L K D ++ + Y ++G EQ R+ LE ID AD
Sbjct: 23 DQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE------IDPSSADA--- 73
Query: 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK 141
AL V + + + LA + Y KA D G L +
Sbjct: 74 ----HAALAVVFQTEMEPK-----------LADEEYRKALASDSRNARVLNNYGGFLYEQ 118
Query: 142 GEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
E+A + + V + + + E+++++L+++ + P
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + YK + ARQ + Q +N +L+ + + +
Sbjct: 179 -LEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAA---SYGLQ 234
Query: 260 AFEIYPYCAMALNYLAN 276
+YP + A
Sbjct: 235 LKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 51/322 (15%), Positives = 93/322 (28%), Gaps = 93/322 (28%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
++ G V N K + + + LG Y+Q G E+A+ LRKA +
Sbjct: 9 HHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE 65
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464
IDP A A + V+ + E
Sbjct: 66 IDPSSADAH--------------------------------------AALAVVFQTEMEP 87
Query: 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524
+ A + ++ AL +D +
Sbjct: 88 KLADEEYRKAL------------------------------------ASDSRNAR----- 106
Query: 525 VTVLFNLARLLEQIHDTVAASVLYR--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
VL N L + A Y + + L ++ + E
Sbjct: 107 --VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164
Query: 583 NEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAA 642
++L++N P+ + DL K ++V A++ + + G + +L LG
Sbjct: 165 EKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLG-IRLAKV 221
Query: 643 LRNEKRAPKLEATHLEKAKELY 664
+ A A++ + K LY
Sbjct: 222 FEDRDTA----ASYGLQLKRLY 239
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 23/230 (10%)
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
+ DAY++L R N + + + +AL+++ +A + L + + A E
Sbjct: 34 DEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE 93
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
+R A + A + NY L +KR E+A +
Sbjct: 94 YRKALAS---DSRNARV---LNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPE 139
Query: 676 YAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ G+V + + +K+ F + P V + +A + + + + A
Sbjct: 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPA 194
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ Y + N + LL R E L+ L P +
Sbjct: 195 RQYYDLFAQGGGQNARS--LLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 19/227 (8%)
Query: 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588
L Q +T A V R L DA+ LA + + +L+ E +AL
Sbjct: 41 IQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 589 NGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDGKDSYATLSLGNWNYFAALRNEK 647
+ + L+ G + + +A + A+ D + S +LG K
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL-----VSLQMK 155
Query: 648 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707
+ +AKE + + + + + A +L ++ ++ ++ + +
Sbjct: 156 K--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 708 SVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+ + + + A R + + + Q
Sbjct: 208 N-----ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 47/281 (16%), Positives = 78/281 (27%), Gaps = 47/281 (16%)
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +S +G+ G Y + E + +A++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRG---SEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
+ + +L +A + +AL+LD A + E +
Sbjct: 61 -INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----------VYVVKEMYKE 109
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
A +++ E AL G +Y L
Sbjct: 110 AKDMF---------------------------EKALRA---GMENGDLFYMLGTVLVKLE 139
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
+ A Y +V E+N + G G AL+ F V E P + +
Sbjct: 140 QPKLALPYLQRAV-ELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
G Y EKA E+L KA I P A L
Sbjct: 197 YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 51/266 (19%), Positives = 84/266 (31%), Gaps = 49/266 (18%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMAL 271
+G + + L P + G K E +A E A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP- 59
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
Y N A S + E+A +Y +
Sbjct: 60 ------------------------------------YINFANLLSSVNELERALAFYDKA 83
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ E++ YYG G V + ++ A FEK L +N + LG + V+L Q
Sbjct: 84 L-ELDS--SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IE 449
+ A L++A +++ D +A G L A A + E+ P +
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCL------ANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 450 VLNNIGVIHFEKGEFESAHQSFKDAL 475
N GV + K E A + A+
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAI 220
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 12/194 (6%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
Y + + E E A +Y+KA +D + + G G + + K ++A F+
Sbjct: 60 YINFANLLSSVNELER----ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L A +N V + +L + +RA++++ + A R G+C G
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA-RFQFGMCLANEGM 174
Query: 213 LGKARQAFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
L +A F + DP + +A + + E A +E + +A +I P +A
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA-----LEMLDKAIDIQPDHMLA 229
Query: 271 LNYLANHFFFTGQH 284
L+ H
Sbjct: 230 LHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 9e-14
Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 22/237 (9%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
+ G E A + + KA + + ++ LL + E+E+
Sbjct: 27 GQQMGRGSEFGDYEK-----------AAEAFTKAIEENKEDAIPYINFANLLSSVNELER 75
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A + + LE D A G V + Y ++ + +++AL+ +G
Sbjct: 76 ALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF-YMLGTV 134
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIY 264
KL Q A QRA++L+ + EA + + + + A + + E
Sbjct: 135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA-----LSQFAAVTEQD 189
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321
P A A + + ++ + A+ + P + + H +
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 55/266 (20%)
Query: 360 SALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
S+ + + P T + G EKA E KA + + DA +I+
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKD 473
LL ++++ + A KA E G ++ K ++ A F+
Sbjct: 63 FANLL------SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLAR 533
AL + +L + TVL L +
Sbjct: 117 AL------------------------------------RAGMENGDLFYMLGTVLVKLEQ 140
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP 593
+ + + ++ +A + L ++ + + +
Sbjct: 141 PKLALPY-------LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA 193
Query: 594 NALSMLGDLELKNDDWVKAKETFRAA 619
+A G ++ KA E A
Sbjct: 194 DAFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 39/335 (11%), Positives = 74/335 (22%), Gaps = 98/335 (29%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ + + + G EKA E KA + + DA +
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY-- 60
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
N + E E A + AL
Sbjct: 61 ------------------------------------INFANLLSSVNELERALAFYDKAL 84
Query: 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535
E D + + V
Sbjct: 85 ------------------------------------ELDSSAATAYYGAGNVYVVKEMYK 108
Query: 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA 595
E + L + D + L + +L++ + A+++N A
Sbjct: 109 EAKDM-------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Query: 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655
G +A F A + D + A + G ++
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVT-EQDPGHADAFYNAGV-----TYAYKEN------- 208
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690
EKA E+ + I ++ A + ++
Sbjct: 209 -REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 22/227 (9%)
Query: 516 NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNL 575
+ A + + + ++ Y+ A + + N L
Sbjct: 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEA---FTKAIEENKEDAIPYINFANLLSSVNEL 73
Query: 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635
+ ++ ++AL+++ A G++ + + + +AK+ F A ++ LG
Sbjct: 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMENGDLFYMLG 132
Query: 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695
L ++ + A R + + ++ A G+ LA +G D +
Sbjct: 133 T-----VLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179
Query: 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR 742
F V E G D + N Y + N A++M +
Sbjct: 180 SQFAAVTEQDPGH-----ADAFYNAGVTYAYKENREKALEMLDKAID 221
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 6e-04
Identities = 26/167 (15%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695
EKA E +T+ I ++ + +L+ + + +
Sbjct: 22 ASMTGGQQMGRGSEFG----DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERAL 77
Query: 696 DLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------KFYYNTD 749
+ + E S + +VY + + A M++ LR +Y
Sbjct: 78 AFYDKALELDS-----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM-- 130
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
L + EQ + L RA+ L ++ RF G+ +
Sbjct: 131 ------LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN 171
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 9e-23
Identities = 56/323 (17%), Positives = 100/323 (30%), Gaps = 54/323 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPAL------LGQACVEFNRGRYSDSLEFYKRA 188
G+ L G+ S F+ ++ +++ L LG A F Y+ +LE++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAY--FYLHDYAKALEYHHHD 69
Query: 189 LQVHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQLDPE-------------- 229
L + + A G +G LG +A QR L + E
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 230 ---------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYL 274
+ + + ++ ++ + + A L
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL 189
Query: 275 ANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249
Query: 332 ---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKAL 382
+++ Y LG L D+ A+ K L I +L
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 383 GHIYVQLGQIEKAQELLRKAAKI 405
G+ Y LG ++A K +I
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEI 332
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-22
Identities = 62/357 (17%), Positives = 104/357 (29%), Gaps = 78/357 (21%)
Query: 164 ALLGQACVEFNRGRYSDSLEFYKRALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQA 219
L + G + F++ A+QV + AI +G + L KA +
Sbjct: 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKT-LSAIYSQLGNAYFYLHDYAKALEY 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
L L G + G A A L N
Sbjct: 66 HHHDLTL------------------ARTIGDQLGE-------------AKASGNLGNTLK 94
Query: 280 FTGQHFLVEQLTETALA----VTNHGPTKSHSYYNLARSYHSKGD--------------- 320
G + L + + ++ + YNL YH+KG
Sbjct: 95 VLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153
Query: 321 -----YEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ A Y + V + + LG LG+FR A+ E+ L I
Sbjct: 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213
Query: 373 ------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELL 420
LG+ Y+ LG+ E A E +K + +AQ+ LG
Sbjct: 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY 273
Query: 421 IS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
D A+D + ++ + + ++G + G + A + L
Sbjct: 274 TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 400
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 67
Query: 401 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 452
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 68 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 127
Query: 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
N+G ++ KG+ L
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 59/382 (15%), Positives = 128/382 (33%), Gaps = 53/382 (13%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G+ L G+ S F+ ++ +++ F Y+ +LE++ L
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75
Query: 191 VHPSCPG----AIRLG-IGLCRYKLGQLGKARQAFQRALQL------DPENVEALVALAV 239
+ + A G +G LG +A QR L + AL L
Sbjct: 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135
Query: 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
+ ++ G + + E+ A+++ E+ A+ +
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY-------------EENLSLVTALGD 182
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLG 356
+ ++ NL +++ G++ A + + + KE Y LG + LG
Sbjct: 183 R-AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241
Query: 357 DFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID---- 406
+F +A ++K L + ++ +LG+ Y L EKA + K I
Sbjct: 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301
Query: 407 --PRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI--------EVLNNIG 455
+ +A LG + + A+ + + ++ G++ ++ +G
Sbjct: 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361
Query: 456 VIHFEKGEFESAHQSFKDALGD 477
+ + S + +L
Sbjct: 362 LSYSTNNSIMSENTEIDSSLNG 383
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 7e-17
Identities = 48/246 (19%), Positives = 82/246 (33%), Gaps = 38/246 (15%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV-TNHGPTKSHSYYNLARSYHSKGDYEKAGL 326
+ L +G E A+ V T T S Y L +Y DY KA
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Query: 327 YY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCE 377
Y+ + + I LG LG+F A+ ++ L+I
Sbjct: 69 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128
Query: 378 TLKALGHIYVQLGQI--------------------EKAQELLRKAAKID------PRDAQ 411
L LG++Y G+ + A + + + +
Sbjct: 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 188
Query: 412 AFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQ 469
AF +LG + A+ A + + K+ G++ +N+G + GEFE+A +
Sbjct: 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
Query: 470 SFKDAL 475
+K L
Sbjct: 249 YYKKTL 254
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-16
Identities = 58/403 (14%), Positives = 112/403 (27%), Gaps = 88/403 (21%)
Query: 46 IAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIET 101
K G V F ++ + AI + LG Y YL
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQ---------VGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
A +Y++ + + ++ +A +
Sbjct: 66 -----------ALEYHHHD--LTLAR-----------TIGDQLGEAKA------------ 89
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
G + +++ +R L + ++G Y LG + A+
Sbjct: 90 ---SGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKG--- 141
Query: 222 RALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLA 275
++ V + ++ ++ + + A L
Sbjct: 142 -------KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLG 194
Query: 276 NHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS- 331
N + G E L + + +Y NL +Y G++E A YY +
Sbjct: 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254
Query: 332 --VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALG 383
+++ Y LG L D+ A+ K L I +LG
Sbjct: 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314
Query: 384 HIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELL 420
+ Y LG ++A K +I + A ++L +L
Sbjct: 315 NAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 12/153 (7%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLR 400
G+ K GD R+ ++ FE +++ LG+ Y L KA E
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHH 71
Query: 401 KAAKI-----DPRD-AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPI-EVLN 452
+ D A+A +LG L + A+ + + ++ ++V L
Sbjct: 72 HDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131
Query: 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
N+G ++ KG+ L
Sbjct: 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELLIS-SDTGA 427
+C L G + G A ++ D + + LG D
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65
Query: 428 ALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
AL+ TL + G+++ + N+G G F+ A + L
Sbjct: 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 2e-21
Identities = 60/346 (17%), Positives = 123/346 (35%), Gaps = 46/346 (13%)
Query: 145 EQASSAFKIVLEADRDN----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
+ S+ + + + +N P + G +++ ++ A+Q P A +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQ 258
+G + + Q A A +R L+L P+N AL+ALAV + A E ++
Sbjct: 103 Y-LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA-----CEILR 156
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
P A + GP+ + S S
Sbjct: 157 DWLRYTPAYAHLVTPAEE-----------------GAGGAGLGPS-----KRILGSLLSD 194
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
+ + ++A+V ++ GLG + G++ A+ F L + P++
Sbjct: 195 SLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGA---ALDAFKTA 435
LG Q E+A R+A ++ P ++ +LG I + GA A++ F A
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI--NLGAHREAVEHFLEA 311
Query: 436 RTLLKKAGE------EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ +K+ + + + + + G+ ++ + L
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 6e-19
Identities = 49/327 (14%), Positives = 101/327 (30%), Gaps = 36/327 (11%)
Query: 112 LATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167
L + Y+K + + + + +G L +G++ A F+ ++ D ++ A
Sbjct: 44 LTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY 103
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ +R L++ P A + + + +A + + L+
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTA-LMALAVSFTNESLQRQACEILRDWLRYT 162
Query: 228 PENVEALVALAVMDLQANEAAGIRKG------------MEKMQRAFEIYP--YCAMALNY 273
P + A R E A + P
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222
Query: 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333
L F +G++ AL+V P + L + + E+A Y ++
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVR---PNDYLLWNKLGATLANGNQSEEAVAAYRRAL- 278
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY------- 386
E+ P +I Y LG + LG R A+ +F + L + + G +
Sbjct: 279 ELQ-P-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336
Query: 387 ----VQLGQIEKAQELLRKAAKIDPRD 409
LGQ + +
Sbjct: 337 RLALSMLGQSDAYGAADARDLSTLLTM 363
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 3e-13
Identities = 56/374 (14%), Positives = 104/374 (27%), Gaps = 77/374 (20%)
Query: 308 YYNLARSYHSKGDYEKAGL--YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
A ++ DY+ Y E P + G +L+ GD +A+ F
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDT 425
E ++ P + E + LG + Q A LR+ ++ P + A
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA------------- 134
Query: 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD 485
L + V + A + +D L
Sbjct: 135 -------------------------LMALAVSFTNESLQRQACEILRDWL-------RYT 162
Query: 486 SKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP-WNKVTVLFNLARLLEQIHDTVAA 544
Y + + L G+ + + +V LF A + ++
Sbjct: 163 PA---YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA--VRLDPTSIDP 217
Query: 545 SVLYRL-ILFKYQ------------------DYVDAYLRLAAIAKARNNLQLSIELVNEA 585
V L +LF + + +L A N + ++ A
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
Query: 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA----SDATDGKDSYATLSLGNWNYFA 641
L++ Y + LG + +A E F A + + +S W+
Sbjct: 278 LELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337
Query: 642 -ALRNEKRAPKLEA 654
AL ++ A
Sbjct: 338 LALSMLGQSDAYGA 351
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 42/294 (14%), Positives = 82/294 (27%), Gaps = 29/294 (9%)
Query: 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA 571
EN P+ + L A +L+ + + +++A+ L
Sbjct: 58 ENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLFEAAVQQDPKHMEAWQYLGTTQAE 110
Query: 572 RNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA-SDATDGKDSYA 630
L+I + L++ AL L +A E R
Sbjct: 111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170
Query: 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAA--NGAGVVLAEK 688
G L + + KEL+ + +++ G GV+
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR------ 742
G++D + D FT +W L A+ Y+ L
Sbjct: 231 GEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285
Query: 743 KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ YN L + ++ + L A+++ + R + G +
Sbjct: 286 RSRYN--------LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 2e-21
Identities = 38/265 (14%), Positives = 73/265 (27%), Gaps = 62/265 (23%)
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
+ K + G+ QA S F+ + + D +Y +
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------------------YYWTNV 46
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ + + L K KA ++ LQ P NV+ L A A M + +
Sbjct: 47 DKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ--- 103
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + ++ ++ A
Sbjct: 104 EKDALRMYEKILQLEADNLAA-------------------------------------NI 126
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L Y+ + EK L + + Y G +L + A + +KV+
Sbjct: 127 FLGNYYYLTAEQEKKKLETDYKKLSSPT--KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 370 EIYPDNCETLKALGHIYVQLGQIEK 394
+P E K L I ++ +
Sbjct: 185 LRFPST-EAQKTLDKILRIEKEVNR 208
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 6e-21
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 26/186 (13%)
Query: 308 YYNLARSYHSKGDYEKA----------------GLYYMASVKEINKPHEFIFPYYGLGQV 351
+ G +A Y+ K + L
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL---ATELALA 63
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
K ++ A ++++L+ P+N + L+A + V GQ + A + K +++ +
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 412 AFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469
A I LG + L+ + K G+ +E A
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----QYARYRDGLSKLFTTRYEKARN 178
Query: 470 SFKDAL 475
S + +
Sbjct: 179 SLQKVI 184
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 5e-18
Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 19/213 (8%)
Query: 41 DLWLIIAREYFKQGK----VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV--YYT 94
D L + G+ V FRQ + ++ ++ Y N+ T
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA------LNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
L K R ++ A +Y + + + ++ + +G+ + A ++ +
Sbjct: 59 ELALAYKKNRNYDK----AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114
Query: 155 LEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213
L+ + DN+ A + + + LE + L A R GL + +
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA-RYRDGLSKLFTTRY 173
Query: 214 GKARQAFQRALQLDPENVEALVALAVMDLQANE 246
KAR + Q+ + P + EA L + E
Sbjct: 174 EKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-16
Identities = 28/212 (13%), Positives = 53/212 (25%), Gaps = 28/212 (13%)
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
L + GQ G+A F++ + L+ + E
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY---------------------YWTN 45
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
+ + LA + + + L P A +G
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRG 102
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD-FRSALTNFEKVLEIYPDNCET 378
+ A Y + ++ + + LG + + L K L
Sbjct: 103 QEKDALRMYEKIL-QLEA--DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
G + + EKA+ L+K P
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 4e-15
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 5/159 (3%)
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175
Y+ + ++A +K +L+ +NV L A ++ R
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL-GKARQAFQRALQLDPENVEAL 234
G+ D+L Y++ LQ+ A + +G Y + K + + L + A
Sbjct: 102 GQEKDALRMYEKILQLEADNLAA-NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYAR 160
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273
+ L K +Q+ +P
Sbjct: 161 YRDGLSKLFTTR---YEKARNSLQKVILRFPSTEAQKTL 196
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 5e-11
Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 66/244 (27%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ + ++ GQ +A R+ ++ + + S
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNS-------------- 50
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
E+ ++ + + + + ++ A+ +K+ L
Sbjct: 51 --------EISSKLATELALAYKKNRNYDKAYLFYKELL--------------------- 81
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
+ N+V+ L A + A +Y IL
Sbjct: 82 ---------------QKAPNNVD-------CLEACAEMQVCRGQEKDALRMYEKILQLEA 119
Query: 557 DYVDAYLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
D + A + L + +E + L K A G +L + KA+ +
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179
Query: 616 FRAA 619
+
Sbjct: 180 LQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 40/228 (17%)
Query: 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617
VD L+ + A ++ + + +N +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677
D S L A + + +KA Y ++ + +N+
Sbjct: 44 TNVDKNSEISSKLATELAL-----AYKKNRN--------YDKAYLFYKELLQKAPNNVDC 90
Query: 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL-AMKM 736
+ +GQ + ++ ++ + + + I L + Y+ ++
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNYYYLTAEQEKKKLET 145
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784
L + +++ + SL + I PS
Sbjct: 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 13/155 (8%)
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+ + + LA K N + E L+ + L ++++
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
A + + + A + LGN+ Y+ EK K E +
Sbjct: 102 GQEKDALRMYEKIL-QLEADNLAANIFLGNY-YYLTAEQEK-----------KKLETDYK 148
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701
+ T YA G+ +++ +++ +V
Sbjct: 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 43/246 (17%)
Query: 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507
++ + E G+ A F+ + L ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA-----------------------LNIDRTEM 40
Query: 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567
++ D N + LA ++ + A + Y+ +L K + VD A
Sbjct: 41 YYWTNVDKNSEISS----KLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE 96
Query: 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGD-LELKNDDWVKAKETFRAASDATDGK 626
+ R + ++ + + L++ A LG+ L + K ET + K
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTK 155
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
YA G + R EKA+ +VI++ S A +L
Sbjct: 156 MQYARYRDGL-----SKLFTTR--------YEKARNSLQKVILRFPST-EAQKTLDKILR 201
Query: 687 EKGQFD 692
+ + +
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 8/135 (5%)
Query: 663 LYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAH 722
+T V + A + + +D + + ++ + A D A
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-----NNVDCLEACAE 96
Query: 723 VYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQWQDCKKSLLRAIHLAP 781
+ +G A++MY+ L+ N A ++L +Y AEQ + ++ + +
Sbjct: 97 MQVCRGQEKDALRMYEKILQLEADNLAA--NIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 782 SNYTLRFDAGVAMQK 796
R+ G++
Sbjct: 155 KMQYARYRDGLSKLF 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-20
Identities = 37/253 (14%), Positives = 69/253 (27%), Gaps = 16/253 (6%)
Query: 174 NRGRYSDSLEFYKRALQ----VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ L ++ L + G+ LG AR F +AL + P+
Sbjct: 17 PTLQQEVILARMEQILASRALTDDERAQLL-YERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 230 NVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
E L + +AA E E+ P A ++ G+ L
Sbjct: 76 MPEVFNYLGIYLTQAGNFDAA-----YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
+ P L + + + + K + + +
Sbjct: 131 QDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFY 187
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
LG + + + + ET LG Y+ LG ++ A L + A +
Sbjct: 188 LGNIS-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246
Query: 408 RDAQAFIDLGELL 420
+ L
Sbjct: 247 HNFVEHRYALLEL 259
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 8/275 (2%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L ++E Q + D +G L + G A + F
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
L D G + + E + L++ P+ A L G+ Y G+
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-HLNRGIALYYGGR 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
A+ Q DP + + L + + + +E + +++ + +
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF 186
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
YL N ++ ++ S + + L + Y S GD + A + +V
Sbjct: 187 YLGN-ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
N H F+ + LG + L ++
Sbjct: 243 A--NNVHNFV-EHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 12/263 (4%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
L + + + D + L + + + G + + + +AL + P
Sbjct: 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD 75
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRK 252
P +G+ + G A +AF L+LDP A + +A+ ++ A
Sbjct: 76 MPEV-FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA---- 130
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
+ + ++ P +L + E L + + + L
Sbjct: 131 -QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 189
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
+ E+ + + + LG+ L LGD SA F+ +
Sbjct: 190 N-ISEQTLMERLKADATDNT-SLA--EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245
Query: 373 PDNCETLKALGHIYVQLGQIEKA 395
N + LGQ +
Sbjct: 246 VHNFVEHRYALLELSLLGQDQDD 268
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 9e-17
Identities = 36/176 (20%), Positives = 59/176 (33%), Gaps = 9/176 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ Y Y S G A + ++ I + + LG + G+F +A
Sbjct: 40 DERAQLLYERGVLYDSLGLRALARNDFSQAL-AIR--PDMPEVFNYLGIYLTQAGNFDAA 96
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
F+ VLE+ P G G+ + AQ+ L + DP D + L
Sbjct: 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQ 156
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
D A + K +K+ +E V +G I E+ E D
Sbjct: 157 KLDEKQAKEVLKQH---FEKSDKEQWGWNIVEFYLGNIS-EQTLMERLKADATDNT 208
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 48/326 (14%), Positives = 87/326 (26%), Gaps = 69/326 (21%)
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431
+ + L Q + + +++L A D AQ + G L +L
Sbjct: 5 WRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLY------DSLGL 58
Query: 432 FKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
AR +A P EV N +G+ + G F++A+++F L
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-------------- 104
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549
E D + N+ L+ R D
Sbjct: 105 ----------------------ELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LL 135
Query: 550 LILFKYQDYVDAYLRLAAIAKARNNLQLSIEL---VNEALKVNGKYPNALSMLGDLELKN 606
+ L L + + Q L ++ K + LG++ +
Sbjct: 136 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS-EQ 194
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666
+ K + S LG + L+ A L+
Sbjct: 195 TLMERLKADATDN-TSLAEHLSETNFYLGK-----YYLSLGD--------LDSATALFKL 240
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQFD 692
+ + N A + L+ GQ
Sbjct: 241 AVANNVHNFVEHRYALLELSLLGQDQ 266
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 28/270 (10%), Positives = 71/270 (26%), Gaps = 22/270 (8%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L + + + + + + L+ ++AL
Sbjct: 14 PLQPTLQQEVILAR---MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
+ P + LG + ++ A E F + D +YA L+ G AL
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTYNYAHLNRGI-----ALYYG 124
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
R + A++ ++ + + + + + + L +++
Sbjct: 125 GR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 175
Query: 707 GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 766
V L ++ Q + + ++ YL + +
Sbjct: 176 -KEQWGWNIVEFYLGNIS-EQTLMERLKADATDNTSLAEHLSET--NFYLGKYYLSLGDL 231
Query: 767 QDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
A+ N+ A + +
Sbjct: 232 DSATALFKLAVANNVHNFVEHRYALLELSL 261
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 43/245 (17%), Positives = 73/245 (29%), Gaps = 45/245 (18%)
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEK 256
I+ + + + +A + + AL+ DP+N A + A L+ N+ A E
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA-----QES 64
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
++A I P A N FL +L
Sbjct: 65 FRQALSIKPDSAEINNNYGW--------FLCGRL-------------------------- 90
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
++ Y+ ++ + P G K G F A ++ L P
Sbjct: 91 --NRPAESMAYFDKALADPTYP-TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
K L + GQ+ A +K + LG I+ G A A++
Sbjct: 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG-WKIAKALGNAQAAYEYEA 206
Query: 437 TLLKK 441
L
Sbjct: 207 QLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
L ++ D+R A + E L+ P N IY L +KAQE R+A
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 405 IDPRDAQAFIDLGELLISS--DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
I P A+ + G L ++ F A L P N G+ ++G
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA---LADPTYPTPYIANLNKGICSAKQG 127
Query: 463 EFESAHQSFKDAL 475
+F A K +L
Sbjct: 128 QFGLAEAYLKRSL 140
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 7e-14
Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 14/173 (8%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
LA Y DY +A ++K P + + ++ L A +F +
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKS--DP-KNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 368 VLEIYPDNCETLKALGHI-YVQLGQIEKAQELLRKAAK--IDPRDAQAFIDLGELLISSD 424
L I PD+ E G +L + ++ KA P A ++ G
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS---- 123
Query: 425 TGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A F A LK++ P + G+ A FK
Sbjct: 124 --AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQ 174
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 36/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 76 ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 135
A+ + I L + Y AT A + D W+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYR-----------QATASIEDALKSDPKNELAWLVRA 49
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPAL--LGQACVEFNRGRYSDSLEFYKRALQVH- 192
++ ++A +F+ L D+ G R ++S+ ++ +AL
Sbjct: 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPT 108
Query: 193 -PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR 251
P+ A L G+C K GQ G A +R+L P+ A LA + A + +
Sbjct: 109 YPTPYIA-NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ---LG 164
Query: 252 KGMEKMQRAFEIYPYCAMALNYLA 275
++ L
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLG 188
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 37/219 (16%), Positives = 67/219 (30%), Gaps = 26/219 (11%)
Query: 35 AEQAP--LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY 92
AE+A ++ +A EY + Q +E+ + + D
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIED--ALKSDPKNELA-------WLVRAEI 51
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK-GEVEQASSAF 151
Y YL + A + + +A I G L + ++ + F
Sbjct: 52 YQYLKVND-----------KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF 100
Query: 152 KIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
L A L + +G++ + + KR+L P P A + +
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF-KELARTKML 159
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
GQLG A F++ + L +A A
Sbjct: 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 20/203 (9%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAK 613
K + +LA + + + + +ALK + K A + ++ KA+
Sbjct: 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQ 62
Query: 614 ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673
E+FR A + + + G L ++ + + + T
Sbjct: 63 ESFRQAL-SIKPDSAEINNNYGW-----FLCGRLN-------RPAESMAYFDKALADPTY 109
Query: 674 NLYAA--NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFA 731
G+ A++GQF +++ + A Q P + LA G
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLG 164
Query: 732 LAMKMYQNCLRKFYYNTDAQILL 754
A ++ + +LL
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLL 187
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 32/269 (11%), Positives = 61/269 (22%), Gaps = 85/269 (31%)
Query: 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAAL 429
E L Y++ +A + A K DP++ A+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW---------------- 45
Query: 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTK 489
I+ + A +SF+ AL
Sbjct: 46 ----------------------LVRAEIYQYLKVNDKAQESFRQAL-------------- 69
Query: 490 TYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLY 548
+ E + N L +++ + +
Sbjct: 70 ----------------------SIKPDSAE-------INNNYGWFLCGRLNRPAESMAYF 100
Query: 549 R--LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
L Y A L + + L+ + +L ++P A L ++
Sbjct: 101 DKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLG 635
A F+ + L LG
Sbjct: 161 GQLGDADYYFKKY-QSRVEVLQADDLLLG 188
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 84.0 bits (209), Expect = 1e-18
Identities = 42/176 (23%), Positives = 62/176 (35%), Gaps = 11/176 (6%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+ Y + S+ G Y +A + + + + LG +K G
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVY-DAD-A-FDVDVALHLGIAYVKTGAVDRG 61
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
E+ L PDN + LG YVQ+ + + A LL K A+ +P + LG L
Sbjct: 62 TELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL- 120
Query: 422 SSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L F A K A P +V I + + G E A FK A
Sbjct: 121 -----DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 36/210 (17%), Positives = 68/210 (32%), Gaps = 43/210 (20%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ K G+ +A ++ D +V+ + L + + R E
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI----------AYVKTGAVDRGTE 63
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ ++A P L +Y Y+
Sbjct: 64 LL-ERSLADA-----------------------------PDNVKVATVLGLTYVQVQKYD 93
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
A + E N P + LG LG F A+ +F+ L + P+ + +A+
Sbjct: 94 LAVPLLIKVA-EAN-P-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAI 150
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
Y Q+G+ E+A +KA ++D +
Sbjct: 151 AFSYEQMGRHEEALPHFKKANELDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 14/187 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
VYY G K + A + D + + G + G V++ +
Sbjct: 9 VYYRDKGISHAKAGRYSQ----AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYK 209
+ L DNV +Y ++ + + +P RLG+ L
Sbjct: 65 LERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL--DN 122
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQRAFEIYPYC 267
LG+ +A +F+ AL L P + A+A + +E A + ++A E+
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA-----LPHFKKANELDEGA 177
Query: 268 AMALNYL 274
++ L +
Sbjct: 178 SVELALV 184
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 8e-10
Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 10/157 (6%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ KG G QA + V +AD +V L G E +R+L
Sbjct: 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA 70
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEA 247
P LG+ ++ + A + + +P N L V +L +
Sbjct: 71 DAPDNVKVATVLGLTY--VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
A ++ + A + P +A + G+H
Sbjct: 129 A-----IDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 89.9 bits (222), Expect = 2e-18
Identities = 47/211 (22%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324
P A +LN LAN G +L AL V P + ++ NLA +G ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEA 62
Query: 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384
++Y +++ P F Y +G ++ D + AL + + ++I P + L
Sbjct: 63 LMHYKEAIRI--SPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAG 443
I+ G I +A R A K+ P A+ +L L D + K +++
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474
E+ N + +H F+ A
Sbjct: 180 EK------NRLPSVHPHHSMLYPLSHGFRKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 2e-14
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 8/189 (4%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
L I+ +Q EE A + Y KA + + +L +G++++A +K
Sbjct: 12 LNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ A +L+ Y RA+Q++P+ A + G
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS-NLASIHKDSGN 126
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
+ +A +++ AL+L P+ +A LA E+M++ I
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHC---LQIVCDWTDYDERMKKLVSIVADQLEKNR 183
Query: 273 YLANHFFFT 281
+ H +
Sbjct: 184 LPSVHPHHS 192
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 2e-13
Identities = 44/243 (18%), Positives = 88/243 (36%), Gaps = 45/243 (18%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
+ +L A ++ +G +++ Y++AL+V P A + + G+L +A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-HSNLASVLQQQGKLQEALMH 65
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
++ A+++ P +A + K M+ +Q A + Y A+ +N
Sbjct: 66 YKEAIRISPTFADAYSNMGN----------TLKEMQDVQGALQCY-TRAIQIN------- 107
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
P + ++ NLA + G+ +A Y ++K KP
Sbjct: 108 ----------------------PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKP- 142
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399
+F Y L + D+ +K++ I D E L ++ +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGF 201
Query: 400 RKA 402
RKA
Sbjct: 202 RKA 204
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 3e-13
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 9/211 (4%)
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
P + ++L LA + + I + + ++A E++P A A + LA+ G+
Sbjct: 4 SCPTHADSLNNLANIKREQGN---IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 60
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345
+ A+ ++ PT + +Y N+ + D + A Y ++ +IN F +
Sbjct: 61 EALMHYKEAIRIS---PTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QIN--PAFADAH 114
Query: 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
L + G+ A+ ++ L++ PD + L H + E ++K I
Sbjct: 115 SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
Query: 406 DPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ S F+ A
Sbjct: 175 VADQLEKNRLPSVHPHHSMLYPLSHGFRKAI 205
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 2e-12
Identities = 33/268 (12%), Positives = 81/268 (30%), Gaps = 11/268 (4%)
Query: 80 YER-IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL 138
Y + + + ++ L + +Q + +E A +Y +A RI + G L
Sbjct: 32 YRKALEVFPEFAAAHSNLASVLQQQGKLQE----ALMHYKEAIRISPTFADAYSNMGNTL 87
Query: 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+V+ A + ++ + A A + + G +++ Y+ AL++ P P A
Sbjct: 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258
+ C + + ++ + + + +E +V + +
Sbjct: 148 -YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLS----HGFR 202
Query: 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318
+A H ++ +H +L +S
Sbjct: 203 KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGM 262
Query: 319 GDYEK-AGLYYMASVKEINKPHEFIFPY 345
+ +K Y S + +
Sbjct: 263 HNPDKFEVFCYALSPDDGTNFRVKVMAE 290
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 4e-09
Identities = 45/352 (12%), Positives = 103/352 (29%), Gaps = 31/352 (8%)
Query: 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616
+ D+ LA I + + N++ ++ L +AL+V ++ A S L + + +A +
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676
+ A + A ++GN L+ + ++ A + YTR I + +
Sbjct: 67 KEAI-RISPTFADAYSNMGN-----TLKEMQD--------VQGALQCYTRAIQINPAFAD 112
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
A + + + G + + + PD + NLAH ++ +
Sbjct: 113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDF-----PDAYCNLAHCLQIVCDWTDYDER 167
Query: 737 YQNCLR----KFYYNTDAQILLYLARTHY-EAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791
+ + + N + + + + + + +
Sbjct: 168 MKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEH 227
Query: 792 VAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNLHL-HGFDEKKI 850
K S L+ ++D H + L + + + K+
Sbjct: 228 PKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKV 287
Query: 851 NTHVEYCKHL------LDAAKIHREAAEREEQQNRQRQEAARQAALAEEARR 896
+ L AA + + AR A
Sbjct: 288 MAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAP 339
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 5e-08
Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 14/175 (8%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++ EA+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNE 646
+++ + +A S +G+ + D A + + A + + A +L + ++
Sbjct: 71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLAS-----IHKDS 124
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701
+ +A Y + A L + + ++
Sbjct: 125 GN--------IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 2e-04
Identities = 42/239 (17%), Positives = 84/239 (35%), Gaps = 54/239 (22%)
Query: 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508
+ LNN+ I E+G E A + ++ AL
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKAL--------------------------------- 36
Query: 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAI 568
E+ NLA +L+Q A + Y+ + + DAY +
Sbjct: 37 ----------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86
Query: 569 AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKD 627
K ++Q +++ A+++N + +A S L + + + +A ++R A D D
Sbjct: 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 146
Query: 628 SYATLS-----LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681
+Y L+ + +W + KL + ++ ++ + H S LY +
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMK-----KLVSIVADQLEKNRLPSVHPHHSMLYPLSHG 200
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 46/332 (13%), Positives = 115/332 (34%), Gaps = 27/332 (8%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
++E ++ EE L Y R + ++ G+ + V + + +
Sbjct: 37 EVEQDIQQMEEDQDLLIYYSLMCFRHQLM--LDYLEPGKTYGNRPTVTELLETIETPQKK 94
Query: 158 DRDNVPA--LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----IGLCRYKL 210
+ L + EF++ Y +++ +Y+ A + P I + Y +
Sbjct: 95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154
Query: 211 GQLGKARQAFQRALQLDPENV--EALVALAVMDLQAN--EAAGIRKGMEKMQRAFEIY-- 264
Q + +AL + + ++ + N + K + ++ A E+
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214
Query: 265 ----PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT--NHGPTKSHSYYNLARSYHSK 318
+ A++L +AN + +G + + + A V+ + L+ +
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274
Query: 319 GDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEIYP 373
G +KA + + + +K ++ +F + + + + L+ FEK ++
Sbjct: 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHA 333
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ ++ E+A RK K
Sbjct: 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 1e-14
Identities = 34/253 (13%), Positives = 86/253 (33%), Gaps = 22/253 (8%)
Query: 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
E + ME+ Q Y + ++ + +TE +
Sbjct: 36 AEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL 95
Query: 305 SH-----SYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLG 356
+ S + + +Y +A YY + + ++ E ++ + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 357 DFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI---- 405
++ + + L+IY ++L + Y +KA L A ++
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215
Query: 406 --DPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462
D A + +++ D A++ F+ A + ++ ++ +VL + + G
Sbjct: 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAG 275
Query: 463 EFESAHQSFKDAL 475
+ + A Q ++ L
Sbjct: 276 QTQKAFQFIEEGL 288
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 46/366 (12%), Positives = 91/366 (24%), Gaps = 79/366 (21%)
Query: 43 WLIIAREYFKQGKVEQFRQILEE--GSSPEIDEYYADVRYERIAILNALGVYYTYLG--- 97
+L + Y + V + + +E + +YY+ L G+Y
Sbjct: 68 YLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS---------LFFRGMYEFDQKEYV 118
Query: 98 -------KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSA 150
+ E + + A ++ A + Q ++ + QA
Sbjct: 119 EAIGYYREAEKELPFVSDDIEKAEFHFKVAE--------AYYHMKQTHVSMYHILQALDI 170
Query: 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GAIRLGIGL 205
++ + +L A + Y +L + AL++ L I
Sbjct: 171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230
Query: 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ G A + FQ+A ++ E +
Sbjct: 231 SYDRSGDDQMAVEHFQKAAKVSREK--------------------------------VPD 258
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-----HGPTKSHSYYNLARSYHSKGD 320
L L+ GQ Q E L + + +
Sbjct: 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318
Query: 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380
Y+ ++ N V F A + KVL+ E +
Sbjct: 319 IHDLLSYF----EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ----EDIL 370
Query: 381 ALGHIY 386
+Y
Sbjct: 371 KGECLY 376
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 38/262 (14%), Positives = 88/262 (33%), Gaps = 24/262 (9%)
Query: 533 RLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY 592
+ ++Q+ + + Y L+ F++Q +D YL R + +E + K
Sbjct: 40 QDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 593 PNALS--MLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNEK 647
S G E ++V+A +R A A A
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEF----HFKVAEAYYHM 154
Query: 648 RAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG 707
+ + H+ +A ++Y + + + + +D + E
Sbjct: 155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE---- 210
Query: 708 SVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCL---RKFYYNTDAQILLYLAR 758
+ + + + +N+A+ Y G+ +A++ +Q R+ + ++L L+
Sbjct: 211 -LAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269
Query: 759 THYEAEQWQDCKKSLLRAIHLA 780
T +A Q Q + + +
Sbjct: 270 TLCKAGQTQKAFQFIEEGLDHI 291
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 3e-18
Identities = 47/324 (14%), Positives = 94/324 (29%), Gaps = 44/324 (13%)
Query: 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQVHPS 194
+ + E+E+ + VL + + AL+ + YS +A+++ P
Sbjct: 76 KQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE 135
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV------MDLQANEAA 248
A +G +K G + A F AL N +L L++ D +
Sbjct: 136 LVEA-WNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSR 193
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSY 308
+ + + + A ++ + L N + +
Sbjct: 194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNP------------------- 234
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++A Y + K K + + + AL F +
Sbjct: 235 ----------KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428
+ P E + + L + LL K P+ Q+ + L + G
Sbjct: 285 AALDPAWPEPQQREQQLLEFLS---RLTSLLESKGKTKPKKLQSML---GSLRPAHLGPC 338
Query: 429 LDAFKTARTLLKKAGEEVPIEVLN 452
D + + K E P+ L
Sbjct: 339 GDGRYQSASGQKMTLELKPLSTLQ 362
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 4e-15
Identities = 32/190 (16%), Positives = 68/190 (35%), Gaps = 19/190 (10%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ + ++ + DY ++ ++ + LG+V K GD SA
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSA 156
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKAAKIDPRDAQA 412
T F L + +L+ L + QL + + + A ++D D ++
Sbjct: 157 HTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 413 FIDLGELLIS--SDTGAALDAFKTARTLLKKAGEEVPI-----EVLNNIGVIHFEKGEFE 465
+ LG +S +TG + A + +A + ++ N +H + +
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 466 SAHQSFKDAL 475
A + F A
Sbjct: 276 EALEGFSQAA 285
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 8e-12
Identities = 49/325 (15%), Positives = 100/325 (30%), Gaps = 41/325 (12%)
Query: 28 DILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYER-IAIL 86
+ +L+ Q +D YF+ VE + ++ E+++ + E +
Sbjct: 42 EAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD-VQEEMEK--TLQQMEEVLGSA 98
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
GK + A +KA +++ W G++ KG+V
Sbjct: 99 QVEAQALMLKGKALNVTPDYSPE---AEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 147 ASSAFKIVLEADRD--------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
A + F L ++ V L + + DS+ K A+Q+ +
Sbjct: 156 AHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Query: 199 -IRLGIGLCR------YKLGQLGKARQAFQRALQLD---PENVEALVALAVM--DLQANE 246
LG +A A+ +A ++D N + + A + ++
Sbjct: 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH 306
A +E +A + P L+E L+ + + G TK
Sbjct: 276 EA-----LEGFSQAAALDPAWPEPQQREQQ---------LLEFLSRLTSLLESKGKTKPK 321
Query: 307 SYYNLARSYHSKGDYEKAGLYYMAS 331
++ S Y ++
Sbjct: 322 KLQSMLGSLRPAHLGPCGDGRYQSA 346
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 9e-12
Identities = 48/315 (15%), Positives = 91/315 (28%), Gaps = 42/315 (13%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ-IEKAQELLRKAAKIDPRDAQAFI 414
+ L E+VL + L G +A+ LL KA K++P +A+
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 415 DLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473
LGE+ D +A F A T K L N+ ++ + S
Sbjct: 142 QLGEVYWKKGDVTSAHTCFSGALTHCKNK------VSLQNLSMVLRQLQTDSGDEHSRH- 194
Query: 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK-----VTVL 528
S+ Q K + D W +++
Sbjct: 195 ---------------------VMDSVRQAK-----LAVQMDVLDGR-SWYILGNAYLSLY 227
Query: 529 FNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588
FN + + ++A + K D +L A + K + ++E ++A +
Sbjct: 228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287
Query: 589 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 648
+ +P L E+ + +L + R +
Sbjct: 288 DPAWPEPQQREQQLLEFLSRLTSLLESKGKT-KPKKLQSMLGSLRPAHLGPCGDGRYQSA 346
Query: 649 APKLEATHLEKAKEL 663
+ + L+ L
Sbjct: 347 SGQKMTLELKPLSTL 361
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 28/217 (12%), Positives = 65/217 (29%), Gaps = 19/217 (8%)
Query: 548 YRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNALSMLGDLELKN 606
+L Q A + + + L+++A+K+ + A + LG++ K
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATH-LEKAKELYT 665
D A F A K+ + +L LR + E + + +
Sbjct: 151 GDVTSAHTCFSGALT--HCKNKVSLQNLSM-----VLRQLQTDSGDEHSRHVMDSVRQAK 203
Query: 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA--------ASGSVFVQMPDVW 717
+ + + G + + Q+A PD+
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLS--LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261
Query: 718 INLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILL 754
+N A ++ + ++ A++ + + Q
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 638 NYFAALRNEKRAPKLEAT--HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS- 694
+YF E K + +EK + V+ A G L +
Sbjct: 63 SYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA 122
Query: 695 KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLR-----KFYYNTD 749
+ L ++ + + W L VY+ +G+ A + L N
Sbjct: 123 EVLLSKAVKLEPEL-----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL- 176
Query: 750 AQILLYLARTHYE--AEQWQDCKKSLLRAIHLAPSNY 784
+ +L L + + D + A+ + +
Sbjct: 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 33/240 (13%), Positives = 75/240 (31%), Gaps = 22/240 (9%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA----VTNHGPTKSHSYYN 310
E + A ++ +++ Q + A + +
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 311 LARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
A ++ YE A ++ + + +P Y +G + + A+ F++
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 368 VLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAFIDL 416
+ ++ P + + I+ +LG+I+KA E K D F L
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
L +S +A + L+ + + ++ + E+ F+ A F
Sbjct: 310 KSLYLSGP---DEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 45/345 (13%), Positives = 106/345 (30%), Gaps = 44/345 (12%)
Query: 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154
+I+ + + EE L Y R ++ L + E + S +
Sbjct: 34 LRREIKQELDQMEEDQDLHLYYSLMEFRHNL----MLEYLEPLEKMRIEEQPRLSDLLLE 89
Query: 155 LEADRDNVPALL------GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-----I 203
++ + + LL + E ++ Y +++F+K+A I +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPE--NVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
Y + Q + ++A ++ E + A +++ + A
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF-----ATNFLDLKQYEDAI 204
Query: 262 EIY-------------PYCAMALNYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKS 305
+ L + Q+ + A+A +N P+
Sbjct: 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264
Query: 306 HSYYNLARSYHSKGDYEKAGLYY---MASVKEI-NKPHEFIFPYYG-LGQVQLKLGDFRS 360
+Y+ + + ++ G +KA Y+ MA ++ + + F + L +
Sbjct: 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
E +Y D + + Y + +KA K ++
Sbjct: 325 FFDFLES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 21/231 (9%)
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYN---LARSYHSKGDYE 322
+ L YL + + T YY + +Y
Sbjct: 61 RHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYL 120
Query: 323 KAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------- 372
A ++ + + + E ++ + + + ++ + EIY
Sbjct: 121 SAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFIDLGELLIS-SDT 425
+ ++ L Q E A +KA + + ++G S S
Sbjct: 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240
Query: 426 GAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDAL 475
A+ FK A + +++ + + I IH++ G+ + AH+ +
Sbjct: 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 56/379 (14%), Positives = 118/379 (31%), Gaps = 62/379 (16%)
Query: 29 ILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA 88
+ + + + L L+ R +E ++ E P + + ++ ++ A L
Sbjct: 42 LDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIE-EQPRLSDLLLEI-DKKQARLTG 99
Query: 89 LGVYYTYL--GKIETKQREKEEHFILATQYYNKASRIDMHEP-------------STWVG 133
L YY G E QRE A +++ KA + ++
Sbjct: 100 LLEYYFNFFRGMYELDQREYLS----AIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY 155
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-- 191
Q + QA +K + + A + +Y D++ +++A +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE 215
Query: 192 ---HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248
P G IGLC+ Q A F+RA+ + E+
Sbjct: 216 AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES------------------ 257
Query: 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPTKSHS 307
I P A + + G+ + +A + G S
Sbjct: 258 -------------NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ +S + G E+A + ++ + + + + +F+ A F K
Sbjct: 305 EFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Query: 368 VLEIYPDNCETLKALGHIY 386
V ++ + ++ +Y
Sbjct: 365 VEQVR----QLIQGGVSLY 379
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 27/264 (10%)
Query: 534 LLEQIHDTVAASVLYRLILFKYQDYVD----AYLRLAAIAKARNNLQLSIELVNEALKVN 589
L+Q+ + + Y L+ F++ ++ ++L L I+ L
Sbjct: 41 ELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100
Query: 590 GKYPNALSMLGDLELKNDDWVKAKETFRAA---SDATDGKDSYATLSLGNWNYFAALRNE 646
+Y G EL +++ A + F+ A + A + +
Sbjct: 101 LEYYFNFFR-GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEF----FFKMSESYYY 155
Query: 647 KRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
+ + +A E+Y + L + + Q++ + F +
Sbjct: 156 MKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS--- 212
Query: 707 GSVFVQMPD------VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYL 756
+ N+ +Q + A+ ++ + F + Q +
Sbjct: 213 --MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 757 ARTHYEAEQWQDCKKSLLRAIHLA 780
+ HY+ + + + + +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYS 294
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 36/236 (15%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ GRY +L ++RAL+ +P P A + + KLG + A + + + P +
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEA-LYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Query: 233 ALVALAVM-DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291
+ L+ +A +G +++A +
Sbjct: 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVL--------------------------- 107
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351
+ A V P + + Y G+ +KA ++ + E L ++
Sbjct: 108 KDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQAL-ALEDTPE---IRSALAEL 160
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L +G AL + K LE P + + + G+ E+A
Sbjct: 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-16
Identities = 41/182 (22%), Positives = 70/182 (38%), Gaps = 25/182 (13%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
L ++ G Y+ A + ++KE P + Y L + QLKLG AL N +
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKE--NP-QDPEALYWLARTQLKLGLVNPALENGKT 64
Query: 368 VLEIYPDNCETLKALGHIYVQL-----------GQIEKAQELLRKAAKIDPRDAQAFIDL 416
++ P L YV L G +E+A +L+ A +++PR A +
Sbjct: 65 LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124
Query: 417 GELLISSDTG---AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473
G + + G A + K A L E+ + + ++ G + A +
Sbjct: 125 GLVY--ALLGERDKAEASLKQALALEDTP------EIRSALAELYLSMGRLDEALAQYAK 176
Query: 474 AL 475
AL
Sbjct: 177 AL 178
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 23/181 (12%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL-----------G 356
Y LAR+ G A V P ++ Y L + + L G
Sbjct: 42 LYWLARTQLKLGLVNPALENGKTLV-ART-PR-YLGGYMVLSEAYVALYRQAEDRERGKG 98
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
AL+ + + P G +Y LG+ +KA+ L++A ++ + L
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSAL 157
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDA 474
EL ++ A KA E+ P +++ KG+ E A ++
Sbjct: 158 AELY------LSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211
Query: 475 L 475
Sbjct: 212 H 212
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 2/142 (1%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
L Y L + + + + A A R++ + +G + GE ++
Sbjct: 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ K L + D A + + GR ++L Y +AL+ P R+
Sbjct: 137 AEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL-RVRYASA 194
Query: 207 RYKLGQLGKARQAFQRALQLDP 228
G+ +A +A
Sbjct: 195 LLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 42/211 (19%), Positives = 71/211 (33%), Gaps = 31/211 (14%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LGV LG+ + A + +A + + +P + L G V
Sbjct: 9 LRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNP 57
Query: 147 ASSAFKIVLEADRDNVPAL--LGQA---------CVEFNRGRYSDSLEFYKRALQVHPSC 195
A K ++ + L +A E +G +L K A +V+P
Sbjct: 58 ALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117
Query: 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKG 253
L GL LG+ KA + ++AL L+ E ALA + + + A
Sbjct: 118 APL-HLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEA----- 170
Query: 254 MEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ + +A E P A+ G+
Sbjct: 171 LAQYAKALEQAPKDLDLRVRYASALLLKGKA 201
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 3e-07
Identities = 41/232 (17%), Positives = 69/232 (29%), Gaps = 23/232 (9%)
Query: 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615
Q LRL A ++ L ALK N + P AL L +LK A E
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Query: 616 FRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675
+ A + + L + AL + + +LE+A + +
Sbjct: 62 GKTLV-ARTPRYLGGYMVLS--EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118
Query: 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMK 735
G+V A G+ D ++ Q P++ LA +Y + G A+
Sbjct: 119 PLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLSMGRLDEALA 172
Query: 736 MYQNCLR------KFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781
Y L A + ++ ++ H
Sbjct: 173 QYAKALEQAPKDLDLRVR--------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 4e-17
Identities = 28/163 (17%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A R + W+ L G+ A + L + A+ V
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ + R++++ ++A P PG +G GQ A A+ RA QL PE
Sbjct: 68 WTQQRHAEAAVLLQQASDAAPEHPGIALW-LGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
L + + + +++ A +L+
Sbjct: 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-14
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 8/173 (4%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
+ + + + + A L A E G + +R L +HP P A+
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA- 61
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGMEKMQR 259
+G R+ + +A Q+A PE+ + L D EAA R
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA-----AAAYTR 116
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
A ++ P L N ++ L+ A G + L+
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 76.0 bits (187), Expect = 3e-14
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 6/140 (4%)
Query: 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340
T A+ P ++ LA + GD + + P
Sbjct: 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HP-G 55
Query: 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400
LG+V+ A ++ + P++ LGH GQ E A
Sbjct: 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115
Query: 401 KAAKIDPRDAQAFIDLGELL 420
+A ++ P + L
Sbjct: 116 RAHQLLPEEPYITAQLLNWR 135
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 2e-13
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
D + L A+V+ +P + L +L +GD + ++ L ++P + E
Sbjct: 3 ADGPRELLQLRAAVRH--RPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTART 437
+ LG + + +A LL++A+ P + LG L + AA A+ A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ 119
Query: 438 L 438
L
Sbjct: 120 L 120
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 43/202 (21%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
+ + A++ P++ A + LA +L + G +QR ++P A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTT---AGEMAVQRGLALHPGHPEA 59
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ L + +H L + A
Sbjct: 60 VARLGRVRWTQQRHAEAAVLLQQASDA--------------------------------- 86
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
P E LG G +A + + ++ P+ L + +L
Sbjct: 87 ------AP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Query: 391 QIEKAQELLRKAAKIDPRDAQA 412
L + + A
Sbjct: 140 DWRALDVLSAQVRAAVAQGVGA 161
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 16/93 (17%), Positives = 30/93 (32%)
Query: 527 VLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586
LA + DT A + + L + + +A RL + + + L+ +A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
++P LG A + A
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 18/211 (8%), Positives = 39/211 (18%), Gaps = 81/211 (38%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
D L + P + L + +G + +++ + P +A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA--- 59
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+ +G + + + A + A
Sbjct: 60 -----------------------------------VARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535
+ H + L L
Sbjct: 85 ------------------------------------DAAPEHPG-------IALWLGHAL 101
Query: 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566
E AA+ Y + +L
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSL 773
W+ LA G+ Q L + + + L R + ++ + L
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 774 LRAIHLAPSNYTLRFDAGVAMQK 796
+A AP + + G A++
Sbjct: 81 QQASDAAPEHPGIALWLGHALED 103
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 29/171 (16%), Positives = 45/171 (26%), Gaps = 19/171 (11%)
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
D + RAA +D A L L + A + R
Sbjct: 4 DGPRELLQLRAAV-RHRPQDFVAWLMLAD-----AELGMGD--------TTAGEMAVQRG 49
Query: 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727
+ H + A G V + + + L Q +AA P + + L H
Sbjct: 50 LALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-----PGIALWLGHALEDA 104
Query: 728 GNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778
G A Y + L R + D + +RA
Sbjct: 105 GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)
Query: 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599
D + R + A+L LA + V L ++ +P A++ L
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659
G + +A + ASDA + L LG+ AL + + E
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDA-APEHPGIALWLGH-----ALEDAGQ--------AEA 109
Query: 660 AKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706
A YTR Y + L QV+ A +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 23/233 (9%), Positives = 46/233 (19%), Gaps = 81/233 (34%)
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIE 449
+ LR A + P+D A
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVA------------------------------------- 25
Query: 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509
+ G+ + + + L
Sbjct: 26 -WLMLADAELGMGDTTAGEMAVQRGL---------------------------------- 50
Query: 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIA 569
H E + L R+ A+VL + ++ L L
Sbjct: 51 --ALHPGHPE-------AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101
Query: 570 KARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622
+ + + A ++ + P + L + + DW A
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 7e-17
Identities = 26/181 (14%), Positives = 60/181 (33%), Gaps = 18/181 (9%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
T S + + L Y +++A + A ++ + +G V+ G++
Sbjct: 23 ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 359 RSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----D 406
+A F + E+ + + + G + A++ K+ D
Sbjct: 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 407 PRD-AQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGE 463
A AF LG+L + A + AR + + + + E++ + +
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
Query: 464 F 464
Sbjct: 203 H 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 49/230 (21%)
Query: 180 DSLEFYKRALQV-----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234
++ ++ Q HP+ R +G + + +AR +FQ Q
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------- 55
Query: 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294
+ +G AL+ + G +
Sbjct: 56 ----------AQKSGDHTAE-------------HRALHQVGMVERMAGNWDAARRCFLEE 92
Query: 295 LAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KEINKPHEFIFPYYG 347
+ S + Y +A GD A Y S+ ++ + + G
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQ 391
LG + + + A ++ + +I+ E + L +
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 361 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRD 409
A + LG++Y + + ++A+ + + D
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 410 -AQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGEEVPIE--VLNNIGVIHFEKGEFE 465
+A +G + + AA F R LL E+ + + G+
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 466 SAHQSFKDAL 475
A Q ++ +L
Sbjct: 125 GARQEYEKSL 134
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 21/224 (9%), Positives = 51/224 (22%), Gaps = 41/224 (18%)
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV-----HPSCPGAIR 200
A + +L A V R+ ++ ++ Q +
Sbjct: 10 LAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260
+G+ G AR+ F +L +
Sbjct: 70 HQVGMVERMAGNWDAARRCFLEEREL------------------LASLPEDPLAA----- 106
Query: 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHS 317
+ +A G Q E +L + + ++ L
Sbjct: 107 -------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159
Query: 318 KGDYEKAGLYYMASV---KEINKPHEFIFPYYGLGQVQLKLGDF 358
+ + +A +++ + E+ L ++
Sbjct: 160 EKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/161 (13%), Positives = 45/161 (27%), Gaps = 29/161 (18%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG Y ++ + + A + + E G +
Sbjct: 27 GARFMLGYVYAFMDRFDE-----------ARASFQALQQQAQKSGDHTAEHRALHQVGMV 75
Query: 138 LLAKGEVEQASSAFKIVLEADR---DNVP----ALLGQACVEFNRGRYSDSLEFYKRALQ 190
G + A F E ++ A V + G + + + Y+++L
Sbjct: 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135
Query: 191 VH-----PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
G+G + L +A+Q + RA +
Sbjct: 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-15
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 1/122 (0%)
Query: 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+ G G+ + A F+ + D + LG + G
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
Y +L+ Y + + P C +LG L A F A L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125
Query: 237 LA 238
A
Sbjct: 126 AA 127
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 4e-13
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y L + + G ++ A + A ++ + + GLG + LG + A
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARY-FLGLGACRQSLGLYEQA 71
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
L ++ + + ++QLG ++ A+ A +
Sbjct: 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 5e-12
Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 1/95 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y LG Q + G + A F+ + + + LG LG E+A + A
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 405 IDPRDAQAFIDLGELLISS-DTGAALDAFKTARTL 438
+D + + E + D A F +AR L
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422
+ + D E L ALG Q G+ + AQ++ + +D DA+ F+ LG
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 423 SDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
AL ++ + + H + G+ + A F A
Sbjct: 66 GLYEQALQSYSYGALMDINE-----PRFPFHAAECHLQLGDLDGAESGFYSAR 113
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 150 AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209
++ D + L ++ G++ D+ + ++ + LG+G CR
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF-LGLGACRQS 64
Query: 210 LGQLGKARQAFQRALQLDPENVEALVALAV 239
LG +A Q++ +D A
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAE 94
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 4e-10
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 6/141 (4%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316
+ + L L + + G+ +++ + + + L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQ 63
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G YE+A Y ++ + + L+LGD A + F +
Sbjct: 64 SLGLYEQALQSYSYGA-LMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 377 ETLKALGHIYVQLGQIEKAQE 397
L + ++
Sbjct: 121 AHEALAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 18/127 (14%)
Query: 70 EIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPS 129
+ E + Y ALG GK + A + + +D ++
Sbjct: 12 GLSEDTLEQLY-------ALGFNQYQAGKWDD-----------AQKIFQALCMLDHYDAR 53
Query: 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189
++G G + G EQA ++ D + A G + + A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113
Query: 190 QVHPSCP 196
+ + P
Sbjct: 114 ALAAAQP 120
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-05
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
L G + G++D ++ +F + ++ L + G + A
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLYEQA 71
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
++ Y + + + A H + + A LA +
Sbjct: 72 LQSYSYGAL--MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 656 HLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715
+ A++++ + + + G G G ++ + ++ P
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-----PR 87
Query: 716 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEA 763
+ A + G+ A + + + L A EA
Sbjct: 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 8e-05
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 2/85 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ L + G + A K++Q +Y+ L L ++ +
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQ 73
Query: 772 SLLRAIHLAPSNYTLRFDAGVAMQK 796
S + + F A +
Sbjct: 74 SYSYGALMDINEPRFPFHAAECHLQ 98
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 16/120 (13%), Positives = 40/120 (33%)
Query: 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587
L+ L Q A +++ + +L L A ++ + +++ +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647
++ P + L+ D A+ F +A + ++ L+ A+ K
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 6e-15
Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 41/179 (22%)
Query: 306 HSYYNLARSYHSKGDYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
++ NL +++ G++ A + + KE Y LG + LG+F +A
Sbjct: 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69
Query: 363 TNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
++K L + ++ +LG+ Y L EKA + K
Sbjct: 70 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH-------------- 115
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
L I+ + D R ++G + G + A + L
Sbjct: 116 --LAIAQELK---DRIGEGRA-------------CWSLGNAYTALGNHDQAMHFAEKHL 156
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 268 AMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKA 324
A L N + G E L + + +Y NL +Y G++E A
Sbjct: 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68
Query: 325 GLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDN 375
YY + +++ Y LG L D+ A+ K L I
Sbjct: 69 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128
Query: 376 CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+LG+ Y LG ++A K +I
Sbjct: 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-10
Identities = 35/176 (19%), Positives = 59/176 (33%), Gaps = 37/176 (21%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G Y LG A A ++ L + + + A
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLL--------------IAKEFGDKAAE------------ 48
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKG 319
+A + L N + F G+ + + L + ++ S Y+L +Y
Sbjct: 49 -----RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 103
Query: 320 DYEKAGLYYMAS---VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372
DYEKA Y++ +E+ + LG LG+ A+ EK LEI
Sbjct: 104 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 43/172 (25%)
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVH-----PSCPGAIRLGIGLCRYKLGQLGKARQAF 220
LG + G + D++ +++ L + + +G LG+ A + +
Sbjct: 15 LGNTH--YLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280
++ L L R A + L N +
Sbjct: 73 KKTLLL------------------ARQLKDRAVE-------------AQSCYSLGNTYTL 101
Query: 281 TGQHFLVEQLTETALAVT----NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328
+ LA+ + + + ++L +Y + G++++A +
Sbjct: 102 LQDYEKAIDYHLKHLAIAQELKDR-IGEGRACWSLGNAYTALGNHDQAMHFA 152
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 22/162 (13%), Positives = 42/162 (25%), Gaps = 32/162 (19%)
Query: 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI------DMHEPSTWVGKGQL 137
LG + LG A + + I E + G
Sbjct: 10 RAFGNLGNTHYLLGNFRD-----------AVIAHEQRLLIAKEFGDKAAERIAYSNLGNA 58
Query: 138 LLAKGEVEQASS----AFKIVLEA-DRDNVPALLGQ-ACVEFNRGRYSDSLEFYKRALQV 191
+ GE E AS + + DR Y +++++ + L +
Sbjct: 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118
Query: 192 ------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQL 226
+G LG +A ++ L++
Sbjct: 119 AQELKDRIG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 75.2 bits (184), Expect = 9e-15
Identities = 32/270 (11%), Positives = 79/270 (29%), Gaps = 15/270 (5%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
F G Y + +R P + + + G + + ++
Sbjct: 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQ 66
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
A+ A + I +++ + + L A+ +F+ +
Sbjct: 67 AVRMFAEYLASHSRRDAIVAELDREM-SRSVDVTNTTFLLMAASIYFYDQNP-------D 118
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
AL + G + + + A + +++ ++ +
Sbjct: 119 AALRTLHQGDSLEC-MAMTVQILLKLDRLDLA-RKELKKMQDQDEDATLTQLATAWVSLA 176
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F+++ + L ++ G+ E A+ +L++A D +
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Query: 413 FIDLGELLISSDTGAALDAFKTARTLLKKA 442
I+L L G + + LK A
Sbjct: 237 LINLVVLSQ--HLGKPPEVTNRYLSQLKDA 264
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 18/233 (7%)
Query: 135 GQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192
+ L + + + + D N LL A + F +L + +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252
KL +L AR+ ++ D + +A A + L A ++
Sbjct: 132 C------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQD 184
Query: 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA 312
Q + + LN A G+ E + + AL + NL
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD---SGHPETLINLV 241
Query: 313 RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365
G + Y++ +K+ ++ H FI + + K DF + +
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFI------KEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 30/244 (12%), Positives = 66/244 (27%), Gaps = 14/244 (5%)
Query: 18 ALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYAD 77
A + + +I + L + A + + L+ S +D
Sbjct: 43 AYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102
Query: 78 VRYERIAILNALGVYYTYLGKIETKQR-----------EKEEHFILATQYYNKASRIDMH 126
+I L + K + LA + K D
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162
Query: 127 EPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184
T + + LA G +++ A F+ + + + L GQA +GR+ +
Sbjct: 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244
+ AL P + + L ++ + + + + +
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PFIKEYRAKENDF 281
Query: 245 NEAA 248
+
Sbjct: 282 DRLV 285
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 7e-09
Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 8/169 (4%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ A S + + + + + + +AL
Sbjct: 67 AVRMFAEYLASHSRRDAI-VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + I ++L +++ A++ L+K D + + +++
Sbjct: 126 QGDSLECMA-----MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
DA+ + + K + +LN H +G +E+A ++AL
Sbjct: 181 KLQDAYYIFQEMADKCSPTL--LLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/269 (12%), Positives = 80/269 (29%), Gaps = 18/269 (6%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+G ++ + ++V P+ E L Y+ + + ++ + +
Sbjct: 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL 65
Query: 411 QAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470
QA E L + + ++ + L I+F ++A ++
Sbjct: 66 QAVRMFAEYL--ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123
Query: 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFN 530
+ I L +L + D + +
Sbjct: 124 LHQGDSLECMAMTVQ-------ILLKLDRLDLARKELKKMQDQDEDATLTQLAT--AWVS 174
Query: 531 LARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG 590
LA E++ D A +++ + K + AA A+ + + ++ EAL +
Sbjct: 175 LAAGGEKLQD---AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231
Query: 591 KYPNALSMLGDLELKNDDWVKAKETFRAA 619
+P L L L + + +
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQ 260
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 9e-04
Identities = 34/240 (14%), Positives = 72/240 (30%), Gaps = 27/240 (11%)
Query: 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDA 622
R + +A + +++E + A+ M + + R S +
Sbjct: 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 623 TDGKDSYATLSLGNW-----NYFAALRNEKRAPKLEATHL-----------EKAKELYTR 666
D ++ L + N AALR + LE + + A++ +
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKK 155
Query: 667 VIVQHTSNLYAANGAGVVLAEKGQ--FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY 724
+ Q V G + +F ++ + S + + A +
Sbjct: 156 MQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT-----LLLLNGQAACH 210
Query: 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLL-RAIHLAPSN 783
AQG + A + Q L K + + L+ L + + L + S+
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGHPET--LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 23/141 (16%), Positives = 50/141 (35%), Gaps = 1/141 (0%)
Query: 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161
I + + I KG +E+A F+ + D N
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69
Query: 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQ 221
V ++G A + + ++ + + Y A + + + G C+ +L KA++ F+
Sbjct: 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV-FHTGQCQLRLKAPLKAKECFE 128
Query: 222 RALQLDPENVEALVALAVMDL 242
+Q + + A + +D
Sbjct: 129 LVIQHSNDEKLKIKAQSYLDA 149
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 9e-13
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
Y+ A +++KG E+A +++ + + GL + F+ A +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDY-IMGLAAIYQIKEQFQQAADLYAV 95
Query: 368 VLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
+ ++ + G ++L KA+E + +
Sbjct: 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 1/92 (1%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
Y G A F + N + + L IY Q ++A +L A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 405 IDPRDAQAFIDLGELLIS-SDTGAALDAFKTA 435
+ D G+ + A + F+
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 6/129 (4%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + D ++ + + I D + + + + + G+IE+A+ R D
Sbjct: 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67
Query: 408 RDAQAFIDLGELLISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFES 466
+ + L + A D + A L K + + G
Sbjct: 68 YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-----YTPVFHTGQCQLRLKAPLK 122
Query: 467 AHQSFKDAL 475
A + F+ +
Sbjct: 123 AKECFELVI 131
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 28/130 (21%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV----TNHGPTKSHSYYNLA 312
++ I + A F+ G+ E A + LA
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRI-------EEAEVFFRFLCIYDFYNVDYIMGLA 77
Query: 313 RSYHSKGDYEKA-GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
Y K +++A LY +A N P + GQ QL+L A FE V++
Sbjct: 78 AIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 372 YPDNCETLKA 381
D +KA
Sbjct: 134 SNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733
+ KG+ + ++ F + + D + LA +Y + F A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQFQQA 89
Query: 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+Y D + + + + K+ I +
Sbjct: 90 ADLYAVAFA--LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
M D + A+ ++ +G A ++ +YN D ++ LA + EQ+Q
Sbjct: 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY--IMGLAAIYQIKEQFQQAAD 91
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
A L ++YT F G
Sbjct: 92 LYAVAFALGKNDYTPVFHTGQC 113
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-14
Identities = 56/278 (20%), Positives = 90/278 (32%), Gaps = 55/278 (19%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++ K+AL+ HP A L + L + +A AL
Sbjct: 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKEAAHLLNDAL 70
Query: 225 QL--------DPENVEALVALAV--MDLQANEAAGIRKGMEKM-QRAFEIY--------P 265
+ P L LAV + A E + +RA EI P
Sbjct: 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA------EPLCKRALEIREKVLGKFHP 124
Query: 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKG 319
A LN LA G+ VE AL + + P + + NLA Y +G
Sbjct: 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD-PNVAKTKNNLASCYLKQG 183
Query: 320 DYEKAGLYYMASVKEINK-----PHEFIFPYYG-LGQVQLKLGDFRSALTNFEKVLEI-- 371
Y+ A Y + ++ + P + + + R + E
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 372 ----YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
P TL++LG +Y + G++E A L A++
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 39/201 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKP-----HEFIFP-YYGLGQVQLKLGDFRS 360
S ++ A ++ E + H + L V ++
Sbjct: 3 SSHHHHHHSSGLVPRGSAVPLCKQAL-EDLEKTSGHDHPDVATMLNILALVYRDQNKYKE 61
Query: 361 ALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------ 406
A L I P TL L +Y + G+ ++A+ L ++A +I
Sbjct: 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121
Query: 407 --PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA--------GEEVP--IEVLNNI 454
P A+ +L L + + ++A G + P + NN+
Sbjct: 122 FHPDVAKQLNNLALLCQN------QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175
Query: 455 GVIHFEKGEFESAHQSFKDAL 475
+ ++G+++ A +K+ L
Sbjct: 176 ASCYLKQGKYQDAETLYKEIL 196
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 30/170 (17%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + + PH I + +G + L + A F
Sbjct: 8 SLWNEGVLAADKKDWKGA----LDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 61
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGELLISSDT 425
+ + G +Y Q + + A + L++A + + LG
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 121
Query: 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
EVL NI ++ +K E++ A + A
Sbjct: 122 -----------------------EVLYNIAFMYAKKEEWKKAEEQLALAT 148
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + +A + S+ +K Y+ G + + + A
Sbjct: 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK--HLAVAYFQRGMLYYQTEKYDLA 90
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 151 KSEPRHSKID 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-08
Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 77/241 (31%)
Query: 168 QACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227
+ + ++ + +L+ + H I IG L + +A +AF R++ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQDPHS----RICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
A + + EK A + AL L +
Sbjct: 68 KHLAVAYFQRGM----------LYYQTEKYDLAIKDL---KEALIQLRGNQLI------- 107
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347
DY+ GL + E+ Y
Sbjct: 108 --------------------------------DYKILGLQFKLFACEV---------LYN 126
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
+ + K +++ A + + + +I+KA E + K +P
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
Query: 408 R 408
Sbjct: 175 V 175
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 29/173 (16%)
Query: 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVE 145
L GV + A ++ G + +
Sbjct: 9 LWNEGVLAADKKDWKG-----------ALDAFSAVQDPH---SRICFNIGCMYTILKNMT 54
Query: 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA--IRLGI 203
+A AF + D+ A + + + +Y +++ K AL LG+
Sbjct: 55 EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114
Query: 204 -------------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
K + KA + A + E + + A+ +
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 167
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 5e-14
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+ S + +A L + A ++ + E + LG Q + A+
Sbjct: 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA---WRSLGLTQAENEKDGLAIIALN 75
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ P + AL + A LR P+ Q
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393
E N P+ + G LKL + A FE V + P+ E ++LG + +
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDG 68
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLI-SSDTGAALDAFKTA 435
A L A +DP+D L + AAL + +
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 7e-11
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220
+ + +++ ++ Q P A +GL + + + G A A
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA-WRSLGLTQAENEKDGLAIIAL 74
Query: 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
A LDP+++ ALAV + A + ++ P
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNAN---AALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 12/99 (12%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
+ +G +L + +A+ AF+ V + + + A + + ++ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ P + + A + + L P+
Sbjct: 80 LDPKDIAV-HAALAVSHTNEHNANAALASLRAWLLSQPQ 117
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 11/81 (13%), Positives = 20/81 (24%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + + + W G + A A D ++ A
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 173 FNRGRYSDSLEFYKRALQVHP 193
N + +L + L P
Sbjct: 96 TNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 9e-06
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
GL KL L +A AF+ Q +PE EA +L + + + + + A
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK---DGLAIIALNHARM 79
Query: 263 IYPYCAMALNYLANHFFFTGQH 284
+ P LA
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNA 101
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 776
+ N A A ++ +K +A L T E E+ +L A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHA 77
Query: 777 IHLAPSNYTLRFDAGVA 793
L P + + V+
Sbjct: 78 RMLDPKDIAVHAALAVS 94
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCL 741
G+ + + + F EA + + W +L LA+ +
Sbjct: 24 GLSMLKLANLAEAALAF----EAVC-QKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 742 RKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781
+ LA +H SL + P
Sbjct: 79 MLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 14/99 (14%), Positives = 33/99 (33%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P+ + ++ + A++ + + K + +A+ L L+I
Sbjct: 13 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAII 72
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619
+N A ++ K + L + A + RA
Sbjct: 73 ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAW 111
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 5e-14
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+Y LG K GD+ A+ ++K LE+ P + E LG+ Y + G ++A E +KA +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+DPR A+A+ +LG + A +KA E P E N+G ++++G
Sbjct: 64 LDPRSAEAWYNLGNAY------YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 463 EFESAHQSFKDAL 475
+++ A + ++ AL
Sbjct: 118 DYDEAIEYYQKAL 130
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 61.3 bits (150), Expect = 3e-11
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRS 360
P + ++YNL +Y+ +GDY++A YY K + P +Y LG K GD+
Sbjct: 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQ---KALELDP-RSAEAWYNLGNAYYKQGDYDE 87
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ ++K LE+ P + E LG+ Y + G ++A E +KA ++DP
Sbjct: 88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.2 bits (137), Expect = 1e-09
Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
LG Y G + A +YY KA +D W G +G+ ++
Sbjct: 5 YNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 53
Query: 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206
A ++ LE D + A + +G Y +++E+Y++AL++ P A +G
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW-YNLGNA 112
Query: 207 RYKLGQLGKARQAFQRALQLDPEN 230
YK G +A + +Q+AL+LDP +
Sbjct: 113 YYKQGDYDEAIEYYQKALELDPRS 136
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 52.0 bits (126), Expect = 4e-08
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 43/173 (24%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G YK G +A + +Q+AL+LDP + EA L A E
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----------AYYKQGDYDEAIE 56
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
Y A+ L+ P + ++YNL +Y+ +GDY+
Sbjct: 57 YY-QKALELD-----------------------------PRSAEAWYNLGNAYYKQGDYD 86
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375
+A YY ++ E+ P +Y LG K GD+ A+ ++K LE+ P +
Sbjct: 87 EAIEYYQKAL-EL-DP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 5e-13
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 1/129 (0%)
Query: 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
+ I G E A F+ + D + LG
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
G+Y ++ Y + P C + G+L +A A +L
Sbjct: 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFP-FHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 230 NVEALVALA 238
E
Sbjct: 122 XPEFXELST 130
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 7e-12
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 4/121 (3%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G G A + EI+ + + Y L Q + G + A F+ + + +
Sbjct: 1 GPLGSGGGTI-AMLNEISS--DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTART 437
LG +GQ + A A +D + + E L+ + A A+
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
Query: 438 L 438
L
Sbjct: 118 L 118
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-11
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201
G + ++ E D + L A ++ G Y D+ ++ + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF-L 59
Query: 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261
G+G CR +GQ A ++ +D A LQ E + + + A
Sbjct: 60 GLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQ 116
Query: 262 EIYP 265
E+
Sbjct: 117 ELIA 120
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
Y+LA + + G YE A + A ++ H + GLG + +G + A
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLD--HYDSRFFLGLGACRQAMGQYDLA 74
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ ++ + +Q G++ +A+ L A ++ +
Sbjct: 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 3e-09
Identities = 24/188 (12%), Positives = 50/188 (26%), Gaps = 43/188 (22%)
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270
G LG ++ + +E L +LA Q + A ++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQ----------SGXYEDAHXVF-QALCV 49
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
L+ S + L + G Y+ A Y
Sbjct: 50 LD-----------------------------HYDSRFFLGLGACRQAMGQYDLAIHSYSY 80
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
++ + + L+ G+ A + E+ + E + + L
Sbjct: 81 GA-VMDIXEPR--FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137
Query: 391 QIEKAQEL 398
I+ +E+
Sbjct: 138 AIKLKKEM 145
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 5e-06
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 38/120 (31%)
Query: 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
G S + EI D E L +L Q G E A + + +D D++
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--- 57
Query: 416 LGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+G G+++ A S+
Sbjct: 58 -----------------------------------FLGLGACRQAMGQYDLAIHSYSYGA 82
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 7/126 (5%)
Query: 657 LEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716
L + + L + G ++ + +F +
Sbjct: 3 LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRF 57
Query: 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRA 776
++ L A G + LA+ Y + + + A + + + + L A
Sbjct: 58 FLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115
Query: 777 IHLAPS 782
L +
Sbjct: 116 QELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 28/134 (20%)
Query: 31 DILKAEQAPLDLWLIIAREYFKQGKVEQ----FRQILEEGSSPEIDEYYADVRYERIAIL 86
+ + L+ +A ++ G E F+ + +D Y + A
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYDSRFFLGLGACR 65
Query: 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQ 146
A+G Y LA Y+ + +D+ EP + LL GE+ +
Sbjct: 66 QAMGQYD------------------LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAE 107
Query: 147 ASSAFKIVLEADRD 160
A S + E +
Sbjct: 108 AESGLFLAQELIAN 121
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ +LA + G + A ++Q +Y++ L L Q+
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF--FLGLGACRQAMGQYDLAIH 76
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
S + F A
Sbjct: 77 SYSYGAVMDIXEPRFPFHAAEC 98
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 58/311 (18%), Positives = 93/311 (29%), Gaps = 80/311 (25%)
Query: 174 NRGRYSDSLEFYKRALQV--------HPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRAL 224
++GRY ++ K+AL+ HP A L + L + A AL
Sbjct: 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDV--ATMLNILALVYRDQNKYKDAANLLNDAL 96
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY----PYCAMALNYLANHFFF 280
IR+ + P A LN LA +
Sbjct: 97 A------------------------IRE---------KTLGKDHPAVAATLNNLAVLYGK 123
Query: 281 TGQHFLVEQLTETALAVT------NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
G++ E L + AL + +H P + NLA ++G YE+ YY ++ E
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDH-PDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-E 181
Query: 335 INK-------PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---------PDNCET 378
I + P+ L LK G F+ A T ++++L +N
Sbjct: 182 IYQTKLGPDDPN-VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLIS-SDTGAALDA 431
G+ + P +LG L AA
Sbjct: 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300
Query: 432 FKTARTLLKKA 442
+ A K+
Sbjct: 301 EEAAMRSRKQG 311
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 65.1 bits (160), Expect = 8e-13
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 5/114 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
K LE+ P+N E LG+ Y + G ++A E +KA ++DP +A+A +LG
Sbjct: 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 58.9 bits (144), Expect = 1e-10
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 38/139 (27%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
E +KA ++DP +A+A+ N+G
Sbjct: 64 EYYQKALELDPNNAEAW--------------------------------------YNLGN 85
Query: 457 IHFEKGEFESAHQSFKDAL 475
++++G+++ A + ++ AL
Sbjct: 86 AYYKQGDYDEAIEYYQKAL 104
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 2e-07
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190
W G +G+ ++A ++ LE D +N A + +G Y +++E+Y++AL+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 191 VHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 72 LDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 102 KALELDPNNAEAKQNLGNAKQKQG 125
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 52/281 (18%)
Query: 176 GRYSDSLEFYKRA--------LQVHPSCPGAIRL--GIGLCRYKLGQLGKARQAFQRALQ 225
+ S++ E +A ++ P A + QL +A+ A+ + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285
N A +A + K +++M A + +
Sbjct: 65 AHANNRSLFHAAKAF----EQAGMMLKDLQRMPEAVQYIEKAS----------------- 103
Query: 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFI 342
+ V N P + + A D KA Y A + + +
Sbjct: 104 --------VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAA 155
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQ 396
++ ++ F A + +K +Y P + A + + AQ
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 397 ELLRKAAKI----DPRDAQAFIDLGELLISSDTGAALDAFK 433
+ +R++ I D A DL + D L +
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 13/161 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE------TLKALGHIYVQLGQIEKAQEL 398
Y A + + E + +N + G + L ++ +A +
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 399 LRKAAKI-----DPRD-AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPI-EVL 451
+ KA+ + P A A G+L+ D A+ ++ A + + E++
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492
+ + +F+ A S + + + K +
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 42/283 (14%), Positives = 84/283 (29%), Gaps = 49/283 (17%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF-NRGRYSDSLEFYKRALQVH 192
+ +AK E +S K + D D+ + +A V F N + + + Y + + H
Sbjct: 9 EAHEHIAKAEKYLKTSFMKW--KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH 66
Query: 193 PSCPGAIRLG-----IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-- 245
+ G+ L ++ +A Q ++A + EN A +D
Sbjct: 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126
Query: 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKS 305
E + K + Q+A ++ +
Sbjct: 127 EPLDLSKAVHLYQQAAAVFEN-------------------------------EERLRQAA 155
Query: 306 HSYYNLARSYHSKGDYEKAGLYY---MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+R + +++A + KE+ VQL D+ +A
Sbjct: 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215
Query: 363 TNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRK 401
+ I ++C L+ L Y E+ + R
Sbjct: 216 KCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVCRS 257
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 22/201 (10%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 607
Y Y + A K L+ + + + + + A G +
Sbjct: 31 DYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
+A + AS + T AA+ ++ +E L KA LY +
Sbjct: 91 RMPEAVQYIEKASVMYVENGTPDT---------AAMALDRAGKLMEPLDLSKAVHLYQQA 141
Query: 668 IV------QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWINL 720
+ A +L + +FD + + + + I
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 721 AHVYFAQGNFALAMKMYQNCL 741
V + ++ A K +
Sbjct: 202 VLVQLHRADYVAAQKCVRESY 222
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402
F Y L Q LK + AL FE+++E PD T LG +Y +L + + A + +
Sbjct: 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
Query: 403 AKIDPR--DAQAFIDLGELL 420
++ + +L +
Sbjct: 68 IEVAREEGTQKDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-09
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + Y LA+ + + +A + V+ P +++ YY LG++ +L A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DP-DYVGTYYHLGKLYERLDRTDDA 60
Query: 362 LTNFEKVLEIYPD--NCETLKALGHIYVQLGQIEKAQ 396
+ + + +E+ + + L L ++ +E
Sbjct: 61 IDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDA 431
P++ T AL +++ +A L + + DP + LG+L T A+D
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 432 FKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469
+ + ++ G + L+ + + E H
Sbjct: 64 YAQGIEVAREEGT---QKDLSELQDAKLKAEGLEHHHH 98
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219
++ A S +L ++ ++ P G +G +L + A
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYH-LGKLYERLDRTDDAIDT 63
Query: 220 FQRALQLDPENVEA 233
+ + +++ E
Sbjct: 64 YAQGIEVAREEGTQ 77
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 7e-12
Identities = 47/349 (13%), Positives = 97/349 (27%), Gaps = 60/349 (17%)
Query: 156 EADRDNVPALLGQ-----ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR----LGIGLC 206
E + + A V N G ++ K AL+ P R +G
Sbjct: 3 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 62
Query: 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266
+ G+L ++ Q+ +M R +++ Y
Sbjct: 63 LHCKGELTRSLALMQQTE-------------------------------QMARQHDVWHY 91
Query: 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDY 321
+L + F G + E A + P A+ +
Sbjct: 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151
Query: 322 EKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---- 375
++A + ++ ++ P + + L Q L GD +A + ++ + +
Sbjct: 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211
Query: 376 ---CETLKALGHIYVQLGQIEKAQELLRKAAKID----PRDAQAFIDLGELLISS-DTGA 427
K + G A LR AK + + ++ I +
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 428 ALDAFKTARTLLKKAGE-EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A + + L + ++++ G A + DAL
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 51/308 (16%), Positives = 105/308 (34%), Gaps = 50/308 (16%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRA 188
G++L KGE+ ++ + + + R + + +L+ Q+ + F +G + E ++A
Sbjct: 60 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119
Query: 189 LQVH-----PSCPGAIRLGIGLCR--YKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
Q+ P L + + +L +A + + +++
Sbjct: 120 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV--------------- 164
Query: 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301
+ Q ++ + LA + L +L H
Sbjct: 165 ------------LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLLGNGKYHS 211
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRS 360
S++ + GD A + + K + F+ + + + Q+ LG+F
Sbjct: 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271
Query: 361 ALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD--AQA 412
A E++ E D L L +Y Q G+ AQ +L A K+ R
Sbjct: 272 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 331
Query: 413 FIDLGELL 420
F+ GE +
Sbjct: 332 FVIEGEAM 339
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 31/230 (13%), Positives = 59/230 (25%), Gaps = 16/230 (6%)
Query: 565 LAAIAKARNNLQLSIELVNEALKVNGKY-----PNALSMLGDLELKNDDWVKAKETFRAA 619
A +A N + L AL+ A S+LG++ + ++ +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 620 SDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679
D + L + T + + + + + Q + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQN 739
+L + D ++ E S Q L A+G+ A
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199
Query: 740 C---LRKFYYNTDAQILLYLARTHY--------EAEQWQDCKKSLLRAIH 778
L Y++D R Y A W A +
Sbjct: 200 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-11
Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 5/126 (3%)
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ + L + + P N E LG Y+ + R+A ++ +A+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79
Query: 412 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQ 469
+ L +L + R ++ KA I L + F + + A +
Sbjct: 80 LYAALATVLYYQASQHMTAQ---TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 470 SFKDAL 475
++ +
Sbjct: 137 LWQKVM 142
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 4/133 (3%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Q R + W G+ L + + + A++ L+ +N A V
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 173 F---NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229
+ ++ + + +AL + + A + + + +A + +Q+ + L+
Sbjct: 89 YYQASQHMTAQTRAMIDKALALDSNEITA-LMLLASDAFMQANYAQAIELWQKVMDLNSP 147
Query: 230 NVEALVALAVMDL 242
+ + +++
Sbjct: 148 RINRTQLVESINM 160
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 4/112 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197
++ E A + + A+ N + YS+SL Y++ALQ+
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA- 78
Query: 198 AIRLGIGLCRYKLGQ---LGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ + Y + R +AL LD + AL+ LA
Sbjct: 79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 2e-08
Identities = 19/126 (15%), Positives = 35/126 (27%)
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E + P S + L Y + DY + L Y +++ + E
Sbjct: 26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ Q +K L + + L L +A EL +K ++
Sbjct: 86 TVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145
Query: 407 PRDAQA 412
Sbjct: 146 SPRINR 151
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 1/129 (0%)
Query: 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215
+A R ++ L+ + ++ +P L +G
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWAL-LGEYYLWQNDYSN 62
Query: 216 ARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ A+++ALQL EN E ALA + + + +A + AL LA
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122
Query: 276 NHFFFTGQH 284
+ F +
Sbjct: 123 SDAFMQANY 131
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE---VEQAS 148
+ LG+ Q + + Y +A ++ + +L + Q
Sbjct: 46 QWALLGEYYLWQNDYSN----SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101
Query: 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+ L D + + AL+ A F + Y+ ++E +++ + ++
Sbjct: 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-11
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378
G +A YY ++ + + Y GLG LG++R A ++ +P++
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ LG+ E+ ELL K D
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 355 LGDFRSALTNFEKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LG A+ +EK + D E LG + LG+ KA+ +L K P
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 412 AFIDLGELL 420
+ +L
Sbjct: 63 LRVFYAMVL 71
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G + ++ +Y++A+ LG+G LG+ KA ++ P +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 234 LVALAV 239
V A+
Sbjct: 64 RVFYAM 69
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 113 ATQYYNKASRIDMHEPS---TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169
A YY KA + ++G G GE +A + ++ ++ + A
Sbjct: 9 AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Query: 170 CVEFNRGRYSDSLEFYKRALQVHPSCPG 197
V +N GRY +E + +
Sbjct: 69 MVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
++ ++E A +Y ++ E+N P ++ + KLG++ A
Sbjct: 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELN-PANAVY-FCNRAAAYSKLGNYAGA 65
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
+ + E+ + I P + +G L + +A +KA ++DP + +L
Sbjct: 66 VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + N A +Y G+Y A ++ I+ + Y +G L A
Sbjct: 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDP--AYSKAYGRMGLALSSLNKHVEA 99
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ ++K LE+ PDN L ++L +
Sbjct: 100 VAYYKKALELDPDNETYKSNLKIAELKLRE 129
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
S D E +G + E A + +E + N +A G Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+ +++ +RA+ + P+ A R+G L L + +A +++AL+LDP+N L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMG--LALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 238 AVMDLQANEA 247
+ +L+ EA
Sbjct: 121 KIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K E+F A +Y KA ++ + + G A + + D A
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY 83
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212
+ ++ +++ +YK+AL++ P + + + KL +
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETY-KSNLKIAELKLRE 129
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-10
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG+ + F +AL + L+ P K LG G A++
Sbjct: 22 RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 405 IDPR--DAQAFIDLGELLISSDTGAALDAFK 433
D Q +L L AL+
Sbjct: 82 AAQSRGDQQVVKELQVFLRRLAREDALEHHH 112
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
E +L DN LG Y + Q + A LR A DP + A+ LG+ L
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 421 ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456
D A A+++ L A +V+ + V
Sbjct: 64 QGQGDRAGARQAWESG---LAAAQSRGDQQVVKELQV 97
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203
++ + + +L DN+ ++ +L + AL P+ A +
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWL 59
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G G ARQA++ L +
Sbjct: 60 GKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA--LLGQAC 170
T+ G+ + + A + L+ D A LG+
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 171 VEFNRGRYSDSLEFYKRALQVHPS 194
+G + + + ++ L S
Sbjct: 64 QG--QGDRAGARQAWESGLAAAQS 85
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
E + L R +G + Q A + AL DP A L
Sbjct: 2 QAITERLEAMLAQGTDNMLL-RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 7e-10
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338
+ E+ E+ T ++ Y G Y +A + Y V +
Sbjct: 242 IYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 339 HEF------------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL---G 383
+ + + L LKL ++ A+ +K L + N K L G
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---KGLYRRG 358
Query: 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + E A+ K +++P++ A
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 6e-07
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K ++ A Y K E + +AS +F + A
Sbjct: 280 KGGKYMQAVIQYGKIVSWLEMEYG----------LSEKESKASESFLL---------AAF 320
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y+ ++E +AL + + + R G + + + A+ F++ L
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG--EAQLLMNEFESAKGDFEKVL 378
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGM-EKM 257
+++P+N A + +++ +A E + + M
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 8e-04
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y ++ Y + + G A L + +C KL + KA +
Sbjct: 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338
Query: 219 AFQRALQLDPENVEAL--VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+AL LD N + L A + + E+A ++ E+ P A ++
Sbjct: 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESA-----KGDFEKVLEVNPQNKAARLQISM 393
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 9e-10
Identities = 106/756 (14%), Positives = 206/756 (27%), Gaps = 279/756 (36%)
Query: 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIA 84
D D+ D+ K+ I+++ E+ I+
Sbjct: 34 DCKDVQDMPKS---------ILSK--------EEIDHIIMSKD-----------AVSGTL 65
Query: 85 ILNALGVYYTYLGKIETKQREKEEHFI---LATQYYNKASRI--DMHEPSTWVGKGQLLL 139
L + +KQ E + F+ L Y S I + +PS ++
Sbjct: 66 RL---------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------MM 108
Query: 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199
+ +EQ + + NV R + L ++AL +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVS-----------RLQPYLKL---RQALL-------EL 147
Query: 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259
R + + GK + + ++ M+
Sbjct: 148 RPAKNVLIDGVLGSGKT----------------WVALDVCLSY------KVQCKMD---- 181
Query: 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319
F+I+ +L E + E + Y + ++ S+
Sbjct: 182 -FKIF--------WLN-----LKNCNSPETVLEMLQKL----------LYQIDPNWTSRS 217
Query: 320 DYEKAGLYYMASVKE------INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373
D+ + S++ +KP+E L L L + ++A K +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYE-----NCL----LVLLNVQNA-----KAWNAFN 263
Query: 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL----LISSDTGAAL 429
+C+ L + R Q L + L
Sbjct: 264 LSCKIL-------------------------LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 430 DAFKTARTLLKKAG---EEVPIEVLNN----IGVIHFEKGEFESAHQSFKDALGDGI--- 479
+ LLK +++P EVL + +I E + DG+
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII----AES----------IRDGLATW 344
Query: 480 --WLTLLDSKTKTYVIDASASMLQFKDMQ-LFHR---FENDGNHVELP-------WNKVT 526
W + K T +I++S ++L+ + + +F R F +P W V
Sbjct: 345 DNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDVI 400
Query: 527 VLFNLARLLEQIHDTVAASVLYRLIL-----FKYQDYVDAYLRLAAIAKARNNLQLSIEL 581
+ V Y L+ YL L K N L +
Sbjct: 401 K--------SDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELK--VKLENEYALHRSI 449
Query: 582 VN-----EALKVNGKYPNALSM---------LGDLELK-----------NDDWVKAKETF 616
V+ + + P L L ++E + +++ K
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--I 507
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-------V 669
R S A + S N L+ K ++ Y R++
Sbjct: 508 RHDSTAWNASGSIL-------NTLQQLKFYKP-------YICDNDPKYERLVNAILDFLP 553
Query: 670 QHTSNLYAANGAGVV---LAEKGQFDVSKDLFTQVQ 702
+ NL + ++ L + + + ++ QVQ
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 8e-05
Identities = 80/610 (13%), Positives = 151/610 (24%), Gaps = 216/610 (35%)
Query: 548 YRLILFKYQD---------YVDAYLR-------LAAIAKARNNLQLSIELVNEALKVNGK 591
Y+ IL ++D V + + I +++ + ++ L L +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQE 76
Query: 592 YPNALSM-LGDLELKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 648
+ + ++ N ++ + K R S T L N N A N R
Sbjct: 77 --EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSR 133
Query: 649 APKLEA--THLEKAKELYTRVIVQHTSNLYAANGAG-VVLAEKGQFDVSKDLFTQVQEAA 705
L + + + ++ + G+G +A DV +VQ
Sbjct: 134 LQPYLKLRQALLELRP--AKNVL-----IDGVLGSGKTWVA----LDVCLSY--KVQCKM 180
Query: 706 SGSVFVQMPDVWINLAHV--------------YFAQGNFA-------------------- 731
+F W+NL + Y N+
Sbjct: 181 DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 732 ---LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQD--CKKSLLRAIHLAPSNYTL 786
L K Y+NCL ++L A
Sbjct: 235 RRLLKSKPYENCL----------LVL-------------LNVQNAKAWNA---------- 261
Query: 787 RFDAGVAMQKFSASTLQKTRRT--ADEVWHDNTVLRVAELENAVRVFSHLSA----ASNL 840
F+ S L TR D + L++ + L
Sbjct: 262 -FN-------LSCKILLTTRFKQVTDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 841 HLHGFDEKKINTHVEYCKHL-----LDAAKIHREAA--EREEQQNRQRQEAARQAALAEE 893
D + E + A I A + + N + +++L
Sbjct: 312 DCRPQDLPR-----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--N 364
Query: 894 ARRKAEEQKKY---------------LLEKRKLEDEQKRLRQQEEHFQR---VKEQWRSS 935
AE +K + LL + + + + V++Q + S
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 936 T---PASKRRERSENDDDEVGHS---EKRRRKGGKRRKKDKSSRS--------------H 975
T P+ + + +++ H + + D H
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 976 -YETEYAEADMM------DYR---------EEPEDEDASM--------NYREPIGQMNDQ 1011
E+ E + D+R + S+ Y+ I D
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDN 537
Query: 1012 DDDVEENAND 1021
D E N
Sbjct: 538 DPKYERLVNA 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 1e-04
Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 82/301 (27%)
Query: 15 VRVALDQLPRDASDILDILKAEQAPLDLWLIIAR--------EYFKQGKVEQFRQILEEG 66
+ LPR+ P L +I + +K ++ I+E
Sbjct: 311 LDCRPQDLPREVLTT--------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE-- 360
Query: 67 SSPEI---DEYYADVRYERIAILNA--------LGVYYTYLGKIETKQREKEEHFILATQ 115
SS + EY ++R+++ L + + + K + + H +
Sbjct: 361 SSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR---------------D 160
K S I + L K ++E + + +++ D
Sbjct: 419 KQPKESTISIP--------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 161 N----------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210
+ F R + D F ++ ++ H S I L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLD-FRFLEQKIR-HDSTAWNASGSI---LNTL 524
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMD-LQANEAAGIR-KGMEKMQRAF-----EI 263
QL + DP+ E LV A++D L E I K + ++ A I
Sbjct: 525 QQLKFYKPYICDN---DPKY-ERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 264 Y 264
+
Sbjct: 580 F 580
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 9e-10
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
P +Y LG K GD+ A+ ++K LE+ P+N E LG+ Y + G ++A
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 397 ELLRKAAKIDPRDAQAFIDLGELL 420
E +KA ++DP +A+A +LG
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAK 87
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 44.7 bits (107), Expect = 6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
+YNL +Y+ +GDY++A YY K + P +Y LG K GD+ A+ ++
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQ---KALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 367 KVLEIYPDNCETLKALGHIYVQLG 390
K LE+ P+N E + LG+ + G
Sbjct: 68 KALELDPNNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 4e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
G Y +++E+Y++AL++ P+ A LG YK G +A + +Q+AL+LDP N EA
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAY--YKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.5 bits (135), Expect = 2e-09
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
YY + G+Y ++ + ++ +++ P E + G+ L + A+ +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAI-QLD-P-EESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 368 VLEIYPD--NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
V+ + D N + A + E E+ AK++
Sbjct: 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-08
Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Query: 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182
+ P + +G L G ++ F+ ++ D + L + +N RY +++
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
Query: 183 EFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
+ Y + V + + + + +L+ +
Sbjct: 61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 6e-08
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
YY G +Q G++ ++ FEK +++ P+ + G L + E+A +
Sbjct: 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 405 I--DPRDAQAFIDLGELL 420
+ D + + + L
Sbjct: 69 VIEDEYNKDVWAAKADAL 86
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG---A 427
+ N E G + G ++ +L KA ++DP +++ ++ G+ L +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL--YNLERYEE 58
Query: 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
A+D + + +E +V E + +
Sbjct: 59 AVDCYNYV---INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P +S + ++ ++ YE+A Y + + + + +
Sbjct: 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NVIEDEYNKDVWAAKADALRYIEGKEVE 95
Query: 362 LTNFEKVLEIYPDN 375
E ++ +
Sbjct: 96 AEIAEARAKLEHHH 109
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-09
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP--------------YYGLGQVQLKLGDFRS 360
+ E+A Y ++ + F + + +KL +
Sbjct: 189 LFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248
Query: 361 ALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A+ + VL N KAL G +LGQ++ A++ RKA K P D
Sbjct: 249 AIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 21/162 (12%)
Query: 98 KIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157
K++ KEE A Q Y A ++G + G+ + + A K
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIA--------YMGDDFMFQLYGKYQDMALAVKNPC-- 232
Query: 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKA 216
L A RY +++ L P A+ R G + +LGQ+ A
Sbjct: 233 -------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRG--KAKAELGQMDSA 283
Query: 217 RQAFQRALQLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
R F++A + P++ L + + + ++ + +
Sbjct: 284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 8e-04
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 22/151 (14%)
Query: 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314
EK++ A + Y MA+ Y+ + F F + N+A
Sbjct: 193 EKLEEAMQQY---EMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL----------NIAAC 239
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y++A + + V + + + G+ + +LG SA +F K + PD
Sbjct: 240 LIKLKRYDEA-IGHCNIVLTEEEKNPKA--LFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Query: 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + L + E+ + L +K ++
Sbjct: 297 DKAIRRELRAL------AEQEKALYQKQKEM 321
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 8e-09
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 18/113 (15%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEF-----------IFPYYG-LGQVQLKLGDFRSAL 362
Y +G Y++A L Y V + F + L LKL F +A+
Sbjct: 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAI 216
Query: 363 TNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K LE+ +N K L G ++ + E A+ +K ++ P + A
Sbjct: 217 ESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 33/154 (21%), Positives = 50/154 (32%), Gaps = 23/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
KE + A Y K +E S E Q + A ++
Sbjct: 159 KEGKYKQALLQYKKIVSWLEYESSFS----------NEEAQKAQALRLAS---------H 199
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A +S ++E +AL++ + + R G + AR FQ+ L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG--EAHLAVNDFELARADFQKVL 257
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
QL P N A LA + A +K M
Sbjct: 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQ 218
F G+Y +L YK+ + A L + +C KL A +
Sbjct: 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217
Query: 219 AFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276
+ +AL+LD N + L A + + E A Q+ ++YP A LA
Sbjct: 218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELA-----RADFQKVLQLYPNNKAAKTQLAV 272
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-08
Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 12/236 (5%)
Query: 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246
+ L + R KL + + N A+ + L +
Sbjct: 115 KTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQLAIQNDLLESLS--K 172
Query: 247 AAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHFLVEQLTETALAVTNHGPTK 304
A + +I P+ L A+ + G + + +E + P
Sbjct: 173 ALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEF 232
Query: 305 SHSYYNLARSYHSKGDYE-------KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+++ A + A + ++ + + + Y L G
Sbjct: 233 TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413
+ +++ + LG +Y G +A + A + P +
Sbjct: 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 16/156 (10%), Positives = 46/156 (29%), Gaps = 12/156 (7%)
Query: 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLL--------LAKG 142
+ + + ++ A++ + + K + L +
Sbjct: 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK 255
Query: 143 EVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200
++ ++ ++ N +++ +A +G+ +S + + + S +
Sbjct: 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315
Query: 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236
LG G +A A+ A L P
Sbjct: 316 LGKVY--EMKGMNREAADAYLTAFNLRPGANTLYWI 349
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 11/121 (9%)
Query: 366 EKVLEIYPDNCETLKAL--GHIYVQLG---QIEKAQELLRKAAKIDPRDAQAFIDLGE-- 418
E + +I P L H Y+ G + +A ELL + + P A +
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243
Query: 419 LLISSDTGAALDAFKTARTLLKKAGEEVPI----EVLNNIGVIHFEKGEFESAHQSFKDA 474
++ S T + + + V KG+ + ++Q+
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
Query: 475 L 475
+
Sbjct: 304 I 304
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP-------------YYGLGQVQLKLGDFRSA 361
+ K + +A + Y ++ E+ L K D+ A
Sbjct: 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107
Query: 362 LTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + KVL+I +N +KAL G + G +E+A+E L KAA ++P +
Sbjct: 108 IDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG---------------AIRLGIGLCRYKLGQLGKAR 217
F + ++++ YK AL + L + C K KA
Sbjct: 49 FKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108
Query: 218 QAFQRALQLDPENVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275
+ L++D NV+AL +A M E A E + +A + P N
Sbjct: 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEA-----KENLYKAASLNPNNLDIRNSYE 163
Query: 276 N 276
Sbjct: 164 L 164
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 22/154 (14%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
K+ A Y +A +H + +I
Sbjct: 50 KKNEINEAIVKYKEALDFFIHTEE---------WDDQILLDKKKNIEISC---------N 91
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
L A Y +++ + L++ + A+ +LG + G L +A++ +A
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLG--VANMYFGFLEEAKENLYKAA 149
Query: 225 QLDPENVEALVALA-VMDLQANEAAGIRKGMEKM 257
L+P N++ + ++ + M
Sbjct: 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-08
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357
+N + + +L + + + D+EKA ++Y ++ E++ P F Y V +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELD-PSNITF-YNNKAAVYFEEKK 57
Query: 358 FRSALTNFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
F + EK +E+ + K G+ + + + A + ++
Sbjct: 58 FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
P+ Y N A Y + + + + +V E+ + + G K
Sbjct: 39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQN 97
Query: 357 DFRSALTNFEKVLEIYPDNCETLKAL 382
D A+ F + L + D E +K +
Sbjct: 98 DLSLAVQWFHRSLSEFRDP-ELVKKV 122
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G + + E+A + +E D N+ +A V F ++++ ++F ++A++V
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
+L G K L A Q F R+L +
Sbjct: 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 7e-08
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFP---------------YYGLGQVQLKLGDFR 359
+ DY++A Y ++ ++ P Y + Q L +GD
Sbjct: 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLH 80
Query: 360 SALTNFEKVLEIYPDNCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
A +VL+ N KAL + ++++A+E L+ + P A
Sbjct: 81 EAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 21/155 (13%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A Y A L + + +E DR N+P
Sbjct: 23 VQKDYKEAIDAYRDA----------------LTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKARQAFQRAL 224
+ N G ++ E L+ + A+ R R +L +A + + L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRA--KARIAAWKLDEAEEDLKLLL 124
Query: 225 QLDPENVEALVAL--AVMDLQANEAAGIRKGMEKM 257
+ P + V + +A + A R KM
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKM 159
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-07
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 23/117 (19%)
Query: 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI--FP--------YYGLGQVQLKLGDF 358
YN+A G Y+ A F+ +P Y LG+ +F
Sbjct: 6 YNVAFDALKNGKYDDA----------SQLFLSFLELYPNGVYTPNALYWLGESYYATRNF 55
Query: 359 RSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ A F ++ YP + L LG G+ +AQ+ L++ A P A
Sbjct: 56 QLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP--------YYGLGQVQLKLGDF 358
+ Y L SY++ +++ A + V +P LG Q G
Sbjct: 41 ALYWLGESYYATRNFQLAEAQFRDLVSR--------YPTHDKAAGGLLKLGLSQYGEGKN 92
Query: 359 RSALTNFEKVLEIYPDNCETLKA 381
A ++V YP + A
Sbjct: 93 TEAQQTLQQVATQYPGSDAARVA 115
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPA-----LLGQACVEFNRGRYSDSLEFYKRALQVH 192
L G+ + AS F LE + V LG++ + + + ++ + +
Sbjct: 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGES--YYATRNFQLAEAQFRDLVSRY 69
Query: 193 PSCPGA--IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
P+ A L +GL +Y G+ +A+Q Q+ P + A VA
Sbjct: 70 PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 3e-07
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 863 AAKIHREAAE-----REEQQNR----QRQEAARQAALAEEARRKAEEQKKYLLEKRKLED 913
A + E REEQ+ R + E+A++ EE + ++E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEK 133
Query: 914 EQKRLRQQEEHFQR 927
+ R ++ F +
Sbjct: 134 NKINNRIADKAFYQ 147
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 1e-05
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 864 AKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEE 923
A+ R E E + + ++ R L ++ +E ++ + +K +E ++Q E
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWRE---KAKKDLEEWN--QRQSE 129
Query: 924 HFQRVKEQWRSSTPASKRRERSENDDD 950
++ K R + + + D D
Sbjct: 130 QVEKNKINNR----IADKAFYQQPDAD 152
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 29/105 (27%)
Query: 876 QQNRQRQEAARQAALAEEARRK-AEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 934
Q +R QE E+ RK EEQ+K RL++ + + ++++WR
Sbjct: 76 QADRLTQEP--------ESIRKWREEQRK-------------RLQELDAASKVMEQEWRE 114
Query: 935 STPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETE 979
+ + + ++ SE+ + R DK+ + +
Sbjct: 115 -------KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
N+G ++L+ + LQ P +G KLG KA +Q A++L+P++
Sbjct: 12 NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367
+ ++GD E A ++ +P YY +G KLGD++ AL N++
Sbjct: 3 QLKTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 368 VLEIYPDN 375
+E+ PD+
Sbjct: 61 AIELNPDS 68
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
+ GD +AL E+ L+ P E +G+ Y +LG +KA + A +++P
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70
Query: 412 AF 413
Sbjct: 71 LQ 72
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 21/188 (11%), Positives = 42/188 (22%), Gaps = 22/188 (11%)
Query: 68 SPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFIL--------------- 112
+ + DV A+L ++ +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 113 --ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170
Y W + L+ + Q +L D N A +
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 171 VEFNRGRYSDSLEFYKRALQVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQ 225
V + + L++ + L+ + L + Q ++
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268
Query: 226 LDPENVEA 233
L P N A
Sbjct: 269 LVPHNESA 276
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-04
Identities = 14/142 (9%), Positives = 41/142 (28%), Gaps = 4/142 (2%)
Query: 302 PTKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360
++ S + D + Y A ++E K ++ ++ + L D
Sbjct: 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---VWHHRRVLVEWLRDPSQ 184
Query: 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
L +L N + + + + + + + K D R+ + ++
Sbjct: 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244
Query: 421 ISSDTGAALDAFKTARTLLKKA 442
++ + +
Sbjct: 245 SNTTGYNDRAVLEREVQYTLEM 266
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + N KGDY +A +Y ++ + N P + Y KL +F+ A
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRN-PKDAKL-YSNRAACYTKLLEFQLA 69
Query: 362 LTNFEKVLEIYPDNCETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418
L + E+ +++ P +K + KA ++ +KA +D +A
Sbjct: 70 LKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 419 LL 420
+
Sbjct: 127 CM 128
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN 174
+++ S ++ KG KG+ QA + ++ + + +A
Sbjct: 3 HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62
Query: 175 RGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ +L+ + +Q+ P+ R + KA +Q+AL LD EA
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKA--AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Query: 234 LVAL 237
Sbjct: 121 ADGY 124
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
GDY A Y ++ P + + LKL D+ A T K +E +
Sbjct: 41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-- 98
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+KAL +LG++++A L++ ++P++
Sbjct: 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F G Y +L Y +AL + + + C KL KA +A++ D +
Sbjct: 39 FKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98
Query: 231 VEALVALAVMDLQANEAAG-IRKGMEKMQRAFEIYPYCAMALNYLAN 276
V+AL + QA E G + + + +QR + P + L N
Sbjct: 99 VKALYRRS----QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ L + K D++ A +Y + E++ P + V + GD+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTY-ITNQAAVYFEKGDYNKCRE 59
Query: 364 NFEKVLEIYPDNCETLKA-------LGHIYVQLGQIEKAQELLRKAAKIDP 407
EK +E+ +N E + +G+ Y + + + A K+
Sbjct: 60 LCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP-----YYGLGQVQLKLG 356
PT N A Y KGDY K ++ E+ + + + Y +G K
Sbjct: 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKEE 93
Query: 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405
++ A+ + K L + + LK ++A+++L++ ++
Sbjct: 94 KYKDAIHFYNKSLAEHRTP-DVLKKC----------QQAEKILKEQERL 131
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGAIRLG------IGLCRYKLGQLGKARQAFQRALQLDPEN 230
R IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 321 YEKAGLYYMASVKEINKPHEFIFP------YYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374
Y K Y S +G +LK+ D++ A+ + + LEI P
Sbjct: 246 YTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305
Query: 375 NCETLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDA 410
N KAL + L + ++A L+KA +I P D
Sbjct: 306 NT---KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 8e-06
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAI--RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
F +G Y +++ Y + + P P + + KLG+ +A Q Q+ L+
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNK---AMALIKLGEYTQAIQMCQQGLRYTSTA 71
Query: 231 VEALV--ALAVMDLQANEAAG-IRKGMEKMQRAFEIYP 265
+ L A A G ++ + ++ E Y
Sbjct: 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 8e-06
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
+S + + ++ +Y KA Y ++ I P I+ G A
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIY-LSNRAAAYSASGQHEKA 64
Query: 362 LTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ E + P + LG + + A+E K + +
Sbjct: 65 AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 304 KSHSYY-NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362
+ Y N A +Y + G +EKA + ++ ++ + LG + + D++ A
Sbjct: 43 ANPIYLSNRAAAYSASGQHEKAAEDAELAT-VVDP--KYSKAWSRLGLARFDMADYKGAK 99
Query: 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+EK +E + + L ++ E + A+ D
Sbjct: 100 EAYEKGIEAEGNGGSD-----AMKRGLETTKRKIEEANRGAEPPADDVDD 144
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
+G +A+ E +A + L N L +A G++ + E + A V P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 194 SCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
A RLG L R+ + A++A+++ ++ +
Sbjct: 77 KYSKAWSRLG--LARFDMADYKGAKEAYEKGIEAEGNGGSD 115
|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 47/326 (14%), Positives = 103/326 (31%), Gaps = 36/326 (11%)
Query: 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTA 809
I +L R Y + I + R A + +A +QK +R
Sbjct: 776 KTIRGWLMRKKYMRMRRA------AITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMY 829
Query: 810 DEVWHDNTVL-RVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHR 868
+ L+ +R + N + E K ++ + L HR
Sbjct: 830 VVRKRYQCMRDATIALQALLRGY----LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885
Query: 869 EAAEREEQQNRQRQEAARQA--ALAEEARR-KAEEQKKYLLEKRKLEDEQKRLRQQEEHF 925
Q R+ A++ L EAR + ++ LE K+ Q+++ +Q + +
Sbjct: 886 TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN-KIMQLQRKIDEQNKEY 944
Query: 926 QRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADM 985
+ + E+ + +++ +R R + K + + E A+
Sbjct: 945 KSLLEKMN------NLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR- 997
Query: 986 MDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAAR 1045
+E + + E + + + + ++ E +
Sbjct: 998 ---KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE-----------LN 1043
Query: 1046 RRRALSESDDDEPFERQLRDNTDELQ 1071
RR + E E++L + T +L+
Sbjct: 1044 RRIHDQAKEITETMEKKLVEETKQLE 1069
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 31/278 (11%), Positives = 65/278 (23%), Gaps = 63/278 (22%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233
+ ++ ++ + +A +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTET 293
A EA K A + F GQ
Sbjct: 74 DEAGNTY----VEAYKCFKSGGNSVNAVDSL-------ENAIQIFTHRGQF--------- 113
Query: 294 ALAVTNHGPTKSHSYYNLARSYHS-KGDYEKAGLYY---MASVKEINKPHEFIFPYYGLG 349
++ + L + DY KA Y + +
Sbjct: 114 --------RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKA 402
++ G + A + K+++ N + G + A L++
Sbjct: 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225
Query: 403 AKIDP-----RDAQAFIDLGELLISSDTGAALDAFKTA 435
DP R++ L + + D +
Sbjct: 226 QSEDPNFADSRESNFLKSLIDAVNEGD----SEQLSEH 259
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 25/202 (12%), Positives = 54/202 (26%), Gaps = 30/202 (14%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424
E ++I+ GQ + + +I D D
Sbjct: 100 LENAIQIFTHR--------------GQFRRGANFKFELGEILENDLH------------D 133
Query: 425 TGAALDAFKTARTLLKKAGEEVPI-EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483
A+D ++ A + + + G++ A + + + L
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 484 LDSKTKTYVIDASASMLQFKDM 505
K Y + L D
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDA 215
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 11/223 (4%)
Query: 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVP 163
+ + A QY ++S++ KG + AK ++A++ ++ +
Sbjct: 47 GHHPDIWYEAAQYLEQSSKL-------LAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 99
Query: 164 AL-LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222
L A E +R +Y Y R L + P + + + + R F++
Sbjct: 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159
Query: 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282
A + V A+M+ ++ + + + Y + ++
Sbjct: 160 AREDARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKA 324
+ L E L + P KS + ++ S GD
Sbjct: 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 6e-04
Identities = 31/254 (12%), Positives = 76/254 (29%), Gaps = 21/254 (8%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE------------ 262
+ A+++ L + + + A Q+++ + M + +
Sbjct: 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ + A++ ++ V + LA+ + PT + Y + +
Sbjct: 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIK 151
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + + ++ H L + D A FE L+ Y D E + A
Sbjct: 152 SGRMIFKKAREDARTRHHVYV-TAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAY 209
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTART 437
L + + L + + ++ ++ D + L K T
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269
Query: 438 LLKKAGEEVPIEVL 451
++ E +L
Sbjct: 270 AFREEYEGKETALL 283
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
S G+ + A Y ++K PH + Y K GD++ A + K +++ PD
Sbjct: 16 SVGNIDDALQCYSEAIK--LDPHNHVL-YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW- 71
Query: 377 ETLKA---LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
K L + E+A+ + K + + Q L +
Sbjct: 72 --GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR-------GRYSDSLEFYK 186
KG L+ G ++ A + ++ D N L NR G Y + E
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYS------NRSAAYAKKGDYQKAYEDGC 62
Query: 187 RALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
+ + + P R L + +A++ ++ L+ + N + L
Sbjct: 63 KTVDLKPDWGKGYSRKA--AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P Y N + +Y KGDY+KA +V ++ ++ Y L F A
Sbjct: 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKP--DWGKGYSRKAAALEFLNRFEEA 91
Query: 362 LTNFEKVLEIYPDNCETLKAL 382
+E+ L+ +N + + L
Sbjct: 92 KRTYEEGLKHEANNPQLKEGL 112
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 2e-05
Identities = 26/164 (15%), Positives = 49/164 (29%), Gaps = 18/164 (10%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTN 364
Y +A K DYE L + + + + + + G + +
Sbjct: 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL 177
Query: 365 FEKVLEIYPD-------NCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQ 411
FE++L+ + + + E++ + KA +I Q
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 412 AFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453
+ GE L + + DA+K A E L N
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVN 281
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377
KGDY A +Y +VK P I Y KL +F+ AL + + + +
Sbjct: 26 KGDYPTAMRHYNEAVKR--DPENAIL-YSNRAACLTKLMEFQRALDDCDTCIRLDSKF-- 80
Query: 378 TLKAL---GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+K V + + KAQ A ++DP + +A
Sbjct: 81 -IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178
+ + I+ KG KG+ A + ++ D +N +A +
Sbjct: 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF 63
Query: 179 SDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237
+L+ +++ IR C + + KA++A++ ALQ+DP N EA +
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKA--ACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 31/242 (12%), Positives = 85/242 (35%), Gaps = 18/242 (7%)
Query: 848 KKINTHVEYCKHLLDAAKIHREAAERE------EQQNRQRQEAARQAALAEEARRKAEEQ 901
+ + ++ K A+ + E++ E+ Q + A AE +
Sbjct: 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919
Query: 902 KKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRK 961
K + L + + R+ ++EE Q+++ + K +++ + ++++ E R+K
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAE------KKKMQQQMLDLEEQLEEEEAARQK 973
Query: 962 GGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENAND 1021
+ +K + + + E D++ ++ E + EE
Sbjct: 974 ----LQLEKVTADG-KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 1022 RLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEPFERQLRDNTDELQDSDGELREND 1081
L + + E+ + + R E + E + D +++ + ++ E
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK-LEGESSDLHEQIAELQAQIAELK 1087
Query: 1082 HK 1083
+
Sbjct: 1088 AQ 1089
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
DYE A +Y ++ E+N P I+ Y L+ + AL + + +E+
Sbjct: 25 KAKDYENAIKFYSQAI-ELN-PSNAIY-YGNRSLAYLRTECYGYALGDATRAIELDKKYI 81
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ + LG+ A K+ P D A + E
Sbjct: 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 176 GRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234
Y +L RA+++ R LG+ A + ++ +++ P + +A
Sbjct: 61 ECYGYALGDATRAIELDKKYIKGYYRRA--ASNMALGKFRAALRDYETVVKVKPHDKDAK 118
Query: 235 VAL-----AVMDLQANEAAGIRKGMEKMQRAFEI 263
+ V A + + + +I
Sbjct: 119 MKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 152
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 3/109 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
K+ + Y +K D+ A Y +K P + Y KL F A+
Sbjct: 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARG-YSNRAAALAKLMSFPEAIA 59
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ K +E P+ + + + A E L A D
Sbjct: 60 DCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 6e-05
Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 13/243 (5%)
Query: 790 AGVAMQKF---SASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNLHLHGFD 846
A V F SA ++ + + VF + L + D
Sbjct: 584 ASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFP----QNGLVVSSVD 639
Query: 847 EKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLL 906
+ + + DA + + A +++ L +EAR + E QK +L
Sbjct: 640 VQSVE---PVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQK--IL 694
Query: 907 EKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKRRERSENDDDEVGHSEKRRRKGGKRR 966
++ + E +K L + E V+ + A R E + + + K + +
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754
Query: 967 KKDKSSRSHYETEYAEADMMDYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAA 1026
+ + R E E + E E A + + + + LA A
Sbjct: 755 TEAELERVKKVRE-MELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVA 813
Query: 1027 GLE 1029
G E
Sbjct: 814 GPE 816
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 21 VGRKYPEAAACYGRAITR--NPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 77
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 410 AQAFIDLGELL 420
L L+
Sbjct: 65 LPGASQLRHLV 75
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-04
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376
Y +A Y ++ P ++ Y LK+ AL + + LE+ +
Sbjct: 16 VGRKYPEAAACYGRAIT--RNPLVAVY-YTNRALCYLKMQQPEQALADCRRALELDGQSV 72
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFID 415
+ LG +++ ++A L++A + F D
Sbjct: 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679 | Back alignment and structure |
|---|
Score = 43.5 bits (101), Expect = 3e-04
Identities = 35/366 (9%), Positives = 86/366 (23%), Gaps = 26/366 (7%)
Query: 47 AREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREK 106
++ +Q +V+ R++ + + ++R T I +
Sbjct: 201 VNKFEEQQRVQYIRKLYKT--LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQY 258
Query: 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166
L + N + + P T + L K + ++ L
Sbjct: 259 MNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE 318
Query: 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226
+ R Y Y +A Q P K + + Q
Sbjct: 319 LSDDLHKARMTYV-----YMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373
Query: 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286
P + +L+ K+ C ++
Sbjct: 374 IPNSAVLAFSLSEQYELNT----------KIPEIETTILSCIDRIHLDLAALM------- 416
Query: 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346
E A+ ++ Y + + + + I+
Sbjct: 417 -EDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475
Query: 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406
+ + D ++A E L+ + + E + + + + + + L +
Sbjct: 476 AYIEYHIS-KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534
Query: 407 PRDAQA 412
Sbjct: 535 SDSHLL 540
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 6/116 (5%)
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQ 411
L+ G+ AL + + + + A ++ Q E AQELL +
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYK 76
Query: 412 AFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467
+ I EL + L + A E+ + V + + G E A
Sbjct: 77 SLIAKLELHQQAAESPELKRLEQEL-----AANPDNFELACELAVQYNQVGRDEEA 127
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-04
Identities = 32/244 (13%), Positives = 73/244 (29%), Gaps = 11/244 (4%)
Query: 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272
LG + A Q ++ + L M+ + E+ +
Sbjct: 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYF 325
Query: 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332
A++ ++ V + LA+ + PT + Y + + + + +
Sbjct: 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY--MKFARRAEGIKSGRMIFKKAR 383
Query: 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQI 392
++ + ++ L + D A FE L+ Y D E + A L +
Sbjct: 384 EDA-RTRHHVYVTAALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 441
Query: 393 EKAQELLRKAAKIDPRDAQAFIDLGELLIS-----SDTGAALDAFKTARTLLKKAGEEVP 447
+ L + + ++ ++ D + L K T ++ E
Sbjct: 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE 501
Query: 448 IEVL 451
+L
Sbjct: 502 TALL 505
|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 9e-04
Identities = 28/248 (11%), Positives = 73/248 (29%), Gaps = 4/248 (1%)
Query: 822 AELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQR 881
++E V L G + ++ + + R ++R R
Sbjct: 176 VDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDR 235
Query: 882 QEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPASKR 941
+ + E ++ E ++ ++R+ + + ++ + + +S+
Sbjct: 236 DRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRS 295
Query: 942 RERSENDD---DEVGHSEKRRRKGGKRRKKDKSSRSHYETEYAEADMMDYREEPEDEDAS 998
RER+ + +E+ + + E D + + D +
Sbjct: 296 RERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERR 355
Query: 999 MNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVDDEMAPSITAARRRRALSESDDDEP 1058
++R + D+D D + + + G + D+ L D
Sbjct: 356 RSHRSERERRRDRDRDRDRDREHKRGERG-SERGRDEARGGGGGQDNGLEGLGNDSRDMY 414
Query: 1059 FERQLRDN 1066
E + D
Sbjct: 415 MESEGGDG 422
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1093 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.98 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.95 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.95 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.89 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.89 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.88 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.87 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.83 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.83 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.82 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.82 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.82 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.82 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.81 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.81 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.81 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.8 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.78 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.77 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.76 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.74 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.73 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.72 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.72 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.72 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.7 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.69 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.67 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.67 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.66 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.66 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.65 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.65 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.64 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.63 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.63 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.62 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.59 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.59 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.58 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.57 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.57 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.52 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.48 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.48 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.46 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.44 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.44 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.43 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.43 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.42 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.4 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.39 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.36 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.35 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.35 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.34 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.34 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.34 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.34 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.34 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.33 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.33 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.33 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.31 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.31 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.29 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.29 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.27 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.27 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.22 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.21 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.2 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.2 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.18 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.17 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.17 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.16 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.15 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.14 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.14 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.11 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.11 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.05 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.97 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.93 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.85 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.8 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.72 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.69 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.68 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.64 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.53 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.48 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.46 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.41 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.38 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.36 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.27 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.22 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.15 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.97 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.79 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.77 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.67 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.36 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.29 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.27 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.21 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.16 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.06 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.04 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.02 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.9 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.57 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.15 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.01 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.01 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.0 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.69 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 95.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.36 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.13 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.95 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.86 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.56 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.49 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.94 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.89 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.73 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.52 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.78 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.77 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.51 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 89.91 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.79 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.79 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.15 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 88.01 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.13 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 86.81 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.91 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 84.8 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 83.76 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=383.79 Aligned_cols=509 Identities=12% Similarity=0.015 Sum_probs=406.3
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
|......+..++..+.+.|++++|+..|.+++...|++ ..++.++.++...|+ +.+|+..|.+++.. |.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD---YARAKCLLTKEDLY-NRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC---HHHHHHHHHHTCGG-GTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc---HHHHHHHHHHHhcc-ccchhHHH
Confidence 43335556677777777777777777777777777743 556667777777776 77777777766543 45566666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.++.+|...|++++|+.+|++.. |..... ..+...+ ......+....+++.+|.+|
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~-----~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETN------PFRKDE-----KNANKLL-------------MQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSC------TTC----------------------------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccC------Cccccc-----ccccccc-------------ccccccchhHHHHHHHHHHH
Confidence 66666666666666666665321 111000 0000000 00011234567899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHhCCCC-HHHHHHHHHHH-hcCCHHH
Q 001357 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL---LRKAAKIDPRD-AQAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---l~~~l~~~p~~-~~~~~~la~~~-~~~~~~~ 427 (1093)
...|++++|+.+|++++..+|.+..++..++.++...+....+... +..+...++.. ...+..++..| ..|++++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 9999999999999999999999999999998877665443332221 22332222211 22334446666 7889999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001357 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1093)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1093)
|+..|.+++.. + .+..+++.++.++...|++++|+.+|++++..
T Consensus 291 A~~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------ 334 (597)
T 2xpi_A 291 AEDYLSSINGL-E-----KSSDLLLCKADTLFVRSRFIDVLAITTKILEI------------------------------ 334 (597)
T ss_dssp HHHHHHTSTTG-G-----GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------
T ss_pred HHHHHHHhhcC-C-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------------------------------
Confidence 99999887765 2 25889999999999999999999999999873
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1093)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (1093)
.|.+..++..++.++...|++++|..++..++...|.++.++..++.++...|++++|+.+|++++.
T Consensus 335 -------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 335 -------------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp -------------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Q 001357 588 VNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667 (1093)
Q Consensus 588 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 667 (1093)
.+|.+..+|..++.+|...|++++|+..|++++...|. +..++..++.+ |... |++++|+.+|+++
T Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 402 MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQ-HMQL------------GNILLANEYLQSS 467 (597)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHH-HHHH------------TCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH-HHHc------------CCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876 77888889999 9988 9999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC-CCCc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQM-PDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 668 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
+...|.++.+++.+|.++...|++++|+.+|+++++..|... .+.. ..+|.++|.+|...|++++|+..|++++..
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 545 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL-- 545 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999865311 1132 789999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 795 (1093)
.+.++.++..+|.+|...|++++|..+|+++++++|+++.++++++.+|.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=375.33 Aligned_cols=480 Identities=13% Similarity=0.075 Sum_probs=408.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
+..+..++..|...|... +|+.+|.+++...|+ ...++.+|.++...|++++|+..|++++.. |.++
T Consensus 84 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~ 150 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYK-----------CAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSS 150 (597)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCH
T ss_pred HHHHHHHHHHHHHccCch-----------HHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccch
Confidence 456788888888888776 999999999998884 477889999999999999999999998654 6789
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1093)
.++..++.+|.+.|++++|+.+|+++ .|.. ...+++.+|.+|.+.|++++|+..|++++
T Consensus 151 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 151 ACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999863 3443 36789999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH--H-HHHHHHhCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 001357 225 QLDPENVEALVALAVMDLQANEAAGIRKGME--K-MQRAFEIYPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300 (1093)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~--~-~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 300 (1093)
..+|.+..++..++.++...+. ...+.. . +......++.. ..++..++..|...|++++|..++..++..
T Consensus 228 ~~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--- 301 (597)
T 2xpi_A 228 MVDAKCYEAFDQLVSNHLLTAD---EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--- 301 (597)
T ss_dssp HHCTTCHHHHHHHHHTTCSCHH---HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---
T ss_pred HhCchhhHHHHHHHHhhcccch---hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---
Confidence 9999999999999887765544 222111 1 33333333222 223444577788889999999999988765
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 301 GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLK 380 (1093)
Q Consensus 301 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1093)
+.+..+++.++.+|...|++++|+.+|.+++. ..|....++..++.++...|++++|+..|.+++...|.+..++.
T Consensus 302 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 302 -EKSSDLLLCKADTLFVRSRFIDVLAITTKILE---IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp -GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred -CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 46678999999999999999999999999987 34556777889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 001357 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (1093)
Q Consensus 381 ~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~ 459 (1093)
.+|.+|...|++++|+.+|++++...|.+..+|..++.++ ..|++++|+..|++++...+. ...+++.+|.+|.
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-----THLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-----CSHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 999999999999998876543 4678889999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001357 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1093)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1093)
..|++++|+.+|++++. ..|.++.++..++.++...|
T Consensus 453 ~~g~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA-------------------------------------------LFQYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHTCHHHHHHHHHHHHH-------------------------------------------HCCCCHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHH-------------------------------------------hCCCChHHHHHHHHHHHHhC
Confidence 99999999999999987 34567788999999999999
Q ss_pred ChHHHHHHHHHHHHh------cCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHH
Q 001357 540 DTVAASVLYRLILFK------YQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKA 612 (1093)
Q Consensus 540 ~~~~A~~~~~~~l~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 612 (1093)
++++|+.+|++++.. +|+. ..++..++.++...|++++|+.++++++..+|.++.++..++.+|...|++++|
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999987 5654 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHhHhH
Q 001357 613 KETFRAASDATDGKDSYATLSLGNW 637 (1093)
Q Consensus 613 ~~~~~~~l~~~~~~d~~~~~~l~~~ 637 (1093)
...|++++...|. +..++..++++
T Consensus 570 ~~~~~~~l~~~p~-~~~~~~~l~~~ 593 (597)
T 2xpi_A 570 ITHLHESLAISPN-EIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 9999999998887 66777777766
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=349.35 Aligned_cols=383 Identities=22% Similarity=0.279 Sum_probs=273.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1093)
.+|..++..|++++|+..|.+++..+|+++.++..++.+++..|++++|..+++.++..+|.+ ..+++.+|.++...|+
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERGQ 82 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCC
Confidence 457778888888888888888888888888888888888888888888888888888888887 6678888888888888
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 213 LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292 (1093)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 292 (1093)
+++|+..|++++.++|++..++..+|.++...|+ +++|+..|.+++..+|++..++..++.++...|++++|+.++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888888888888888888888888887 8888888888888888777777777777766666666666666
Q ss_pred HHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 293 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1093)
+++... |....++..+|.++...|++++|+..|++++. ..|....++..+|.++...|++++|+..|.+++..+
T Consensus 160 ~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 160 KAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666543 45556666677777777777777777777666 345566667777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001357 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1093)
|+++.++..+|.++...|++++|+..|++++..+|.++.++..++.++ ..|++++|+..|++++...|. .+.++
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 308 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADSL 308 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-----cHHHH
Confidence 777777777777777777777777777777777776666666666666 666666666666666655332 35556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 531 (1093)
.++|.++...|++++|+.+|++++. ..|....+++.+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~-------------------------------------------~~p~~~~~~~~l 345 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALE-------------------------------------------VFPEFAAAHSNL 345 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTT-------------------------------------------SCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------------cCCCcHHHHHHH
Confidence 6666666666666666666666655 334455566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 001357 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1093)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1093)
|.++...|++++|+..|++++..+|+++.+++.+|.++...|
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 666666666666666666666666666666666665555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=345.45 Aligned_cols=383 Identities=16% Similarity=0.224 Sum_probs=363.3
Q ss_pred HHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001357 89 LGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ 168 (1093)
Q Consensus 89 la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 168 (1093)
+|..++..|+.. +|+..|.+++..+|+++.++..+|.+++..|++++|...++.++..+|.++.++..+
T Consensus 5 ~a~~~~~~g~~~-----------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l 73 (388)
T 1w3b_A 5 LAHREYQAGDFE-----------AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73 (388)
T ss_dssp HHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 456666666655 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAA 248 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~ 248 (1093)
|.++...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|.+++..+|++..++..+|.++...|+
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-- 150 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLKPDF-IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR-- 150 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC--
Confidence 999999999999999999999999999 77899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001357 249 GIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1093)
Q Consensus 249 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1093)
+++|+..|.+++..+|.++.++..++.++...|++++|+..+++++... |....++..+|.++...|++++|+..|
T Consensus 151 -~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 151 -LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865 677899999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 329 MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
.+++. ..|....++..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.
T Consensus 227 ~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 227 LRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 99998 567788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccc
Q 001357 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (1093)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (1093)
++.++..++.++ ..|++++|+..+++++...|. ...+++++|.++...|++++|+.+|++++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------- 367 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEAIR----------- 367 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------
Confidence 999999999999 999999999999999886544 588999999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001357 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540 (1093)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 540 (1093)
..|....+++++|.++..+|+
T Consensus 368 --------------------------------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 368 --------------------------------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp --------------------------------TCTTCHHHHHHHHHHHHHTCC
T ss_pred --------------------------------hCCCCHHHHHhHHHHHHHccC
Confidence 567889999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=330.59 Aligned_cols=426 Identities=15% Similarity=0.125 Sum_probs=356.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..++.+|..++..|+|++|+..|++++..+| ++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY-SKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 45788889999999999999999999999988 68889999999999999999999999999999988 67788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH--------------------------
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF-------------------------- 261 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al-------------------------- 261 (1093)
..+|++++|+..|.+++..+|.+......+..............+++..+..+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999888665443333322222222111222221111110
Q ss_pred --------Hh--------CCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----c--cCCC----CCchHHHHHH
Q 001357 262 --------EI--------YPYCAMALNYLANHFFF---TGQHFLVEQLTETALA-----V--TNHG----PTKSHSYYNL 311 (1093)
Q Consensus 262 --------~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~-----~--~~~~----~~~~~~~~~l 311 (1093)
.. .|.++.++..++..++. .|++++|+.++.+++. . .+.. |....+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00 14558888888988887 8999999999999998 4 2222 5567899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1093)
Q Consensus 312 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1093)
|.++...|++++|+.+|.+++.. .|. ..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL---FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh---Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999984 455 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
+++|+..|.+++...|.+..++..++.++ ..|++++|+..+.+++...+. .+.++..+|.++...|++++|+.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-----APEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-----CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-----CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999 999999999999999987554 468899999999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh---cCChHHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ---IHDTVAASVL 547 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~ 547 (1093)
|.+++...+... .......+++.+|.++.. .|++++|+..
T Consensus 395 ~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 395 YDLAIELENKLD-------------------------------------GIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHTSS-------------------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHhhhccc-------------------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 999988532100 011124589999999999 9999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhh
Q 001357 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (1093)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 601 (1093)
|++++..+|+++.++..+|.++...|++++|..+|++++.++|.++.++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=331.90 Aligned_cols=461 Identities=13% Similarity=0.123 Sum_probs=274.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..|+.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+|.++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-SKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence 35566666666666666666666666666666666666666666666666666666666666666666 55566666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1093)
..+|++++|+..|+ ++..+|+....+.. .+...+. ...|+..+..++...|...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~---~~~a~~~~~~~l~~~~~~~------------------- 157 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNL---NKQAMKVLNENLSKDEGRG------------------- 157 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC--------------CHHHHHH---HHHHHHHHHHHCC-------------------------
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHH---HHHHHHHHHHHHHhCcccc-------------------
Confidence 66666666666664 55555554443321 1112222 3344444444444333221
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEK 367 (1093)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 367 (1093)
............+....+...++..+..
T Consensus 158 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 158 ----------------------------------------------------SQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp -----------------------------------------------------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred ----------------------------------------------------ccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 0000011111223333333333333333
Q ss_pred HHHhCCCcHHHHHHHHHHH--------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001357 368 VLEIYPDNCETLKALGHIY--------VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 368 ~l~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 439 (1093)
.....+........++.++ ...|++++|+..|++++..+|++..++..++.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------------- 244 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL--------------------- 244 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH---------------------
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH---------------------
Confidence 3333333222222222222 22346667777777777777766555443322
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcC
Q 001357 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (1093)
Q Consensus 440 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 519 (1093)
++..+|.++...|++++|+.+|.+++..
T Consensus 245 ----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~------------------------------------------ 272 (537)
T 3fp2_A 245 ----------ALCYTGIFHFLKNNLLDAQVLLQESINL------------------------------------------ 272 (537)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------------------
T ss_pred ----------HHHHHHHHHHhcccHHHHHHHHHHHHhc------------------------------------------
Confidence 2334455566666666666666666552
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
.|. ..+++.+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.
T Consensus 273 -~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 345 (537)
T 3fp2_A 273 -HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY----- 345 (537)
T ss_dssp -CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH-----
T ss_pred -CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-----
Confidence 233 4555555666555566666666555555555555555555555555555555555555555555554443
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 001357 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (1093)
++..+|.+ |... |++++|+.+|.+++..+|+++.++.
T Consensus 346 ------------------------------~~~~la~~-~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~ 382 (537)
T 3fp2_A 346 ------------------------------PYIQLACL-LYKQ------------GKFTESEAFFNETKLKFPTLPEVPT 382 (537)
T ss_dssp ------------------------------HHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred ------------------------------HHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 44455555 6655 6777777777777777888888888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhhcCCC
Q 001357 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQ----------GNFALAMKMYQNCLRKFYYNT 748 (1093)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~ 748 (1093)
.+|.++...|++++|+.+|+++++..|..... .....++.+|.+|... |++++|+..|++++.. .+.
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~ 460 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPR 460 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCC
Confidence 88899999999999999999999888753222 2234467788999999 9999999999999998 667
Q ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 749 DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 749 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
++.++..+|.+|...|++++|..+|++++.+.|+++...-.+..
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 504 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHhH
Confidence 78999999999999999999999999999999998766544433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=329.29 Aligned_cols=454 Identities=16% Similarity=0.131 Sum_probs=354.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1093)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 158 (1093)
.......+..+|..|+..|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFN-----------EAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC------------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778899999999999888 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---H
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL---V 235 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~---~ 235 (1093)
|+++.+++.+|.++...|++++|+..|+ ++...|+.... + ...+...+....|+..|.+++...|...... .
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~-~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA-S---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH-H---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 9999999999999999999999999996 88888877322 2 2345555667889999999988755432111 1
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HcCChHHHHHHHHHHHhccCCCCC----
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF--------FTGQHFLVEQLTETALAVTNHGPT---- 303 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~~~~~~---- 303 (1093)
.....+....+ ...++..+......++........++.++. ..|++++|+.+++.++...+..+.
T Consensus 165 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFD---SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSC---HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHH
T ss_pred hHHHHHHHhcC---hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHH
Confidence 11111222222 334444444333344443334443333322 224666677777766654433221
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1093)
Q Consensus 304 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1093)
.+.+++.+|.++...|++++|+.+|.+++.. .|. ..+++.+|.++...|++++|+.+|.+++..+|.++.++..+|
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL---HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1356888899999999999999999999984 455 788999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001357 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g 462 (1093)
.++...|++++|+..|++++..+|.+..++..++.++ ..|++++|+..+.+++...|. .+.++..+|.++...|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-----LPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999 999999999999999988554 4788999999999999
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhc----
Q 001357 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI---- 538 (1093)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~---- 538 (1093)
++++|+.+|++++...+... ........++.+|.++...
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQE-------------------------------------KIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCS-------------------------------------SCSSTTHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHcCCcch-------------------------------------hhHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999998543110 1112344567788888888
Q ss_pred ------CChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHH
Q 001357 539 ------HDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1093)
Q Consensus 539 ------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 597 (1093)
|++++|+..|++++..+|++..++..+|.++...|++++|+.+|++++.+.|..+....
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887644
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=317.80 Aligned_cols=420 Identities=17% Similarity=0.171 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+....+..+|..|+..|+.. +|+..|++++..+| ++.+++.+|.+++..|++++|+..|++++..+|+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYD-----------DAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred hhHHHHHHHHHHHHHhccHH-----------HHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 46678888999999988877 99999999999999 6999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH---HHH--------------
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF---QRA-------------- 223 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~---~~a-------------- 223 (1093)
++.+++.+|.++...|++++|+..|++++...|.+.......+..+ ........+...+ ..+
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN-LNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH-HHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 9999999999999999999999999999999987743322222222 1111111111111 000
Q ss_pred --------------------Hhh--------CCCcHHHHHHHHHHHHH---hhhHHhHHHHHHHHHHHHH-----h--C-
Q 001357 224 --------------------LQL--------DPENVEALVALAVMDLQ---ANEAAGIRKGMEKMQRAFE-----I--Y- 264 (1093)
Q Consensus 224 --------------------l~~--------~p~~~~a~~~la~~~~~---~~~~~~~~~Al~~~~~al~-----~--~- 264 (1093)
+.. .|.+..+++.++.+++. .|+ +.+|+..|.+++. + +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES---YDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTH---HHHHHHHHHHHHHHHHHHTTTST
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHhhhhhccCc
Confidence 000 15558888999988887 666 9999999999999 5 3
Q ss_pred ------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 001357 265 ------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1093)
Q Consensus 265 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1093)
|.++.++..+|.++...|++++|+.++.+++... |. ..+++.+|.++...|++++|+.+|.+++. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~ 300 (514)
T 2gw1_A 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PR-VNSYIYMALIMADRNDSTEYYNYFDKALK---LD 300 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHT---TC
T ss_pred cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhh---cC
Confidence 5667899999999999999999999999999875 44 89999999999999999999999999997 56
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
|....++..+|.++...|++++|+.+|++++...|.+..++..+|.++...|++++|+.+|.+++...|.++.++..+|.
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 380 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE 380 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001357 419 LL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFE---KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1093)
Q Consensus 419 ~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 493 (1093)
++ ..|++++|+..+.+++...+...... ...++..+|.++.. .|++++|+.+|++++.
T Consensus 381 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~----------------- 443 (514)
T 2gw1_A 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK----------------- 443 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-----------------
T ss_pred HHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH-----------------
Confidence 99 99999999999999999887643211 14589999999999 9999999999999998
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566 (1093)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 566 (1093)
..|....+++.+|.++...|++++|...|++++..+|++..++..+.
T Consensus 444 --------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 444 --------------------------LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp --------------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred --------------------------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 45678889999999999999999999999999999999988877664
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-30 Score=302.34 Aligned_cols=379 Identities=19% Similarity=0.166 Sum_probs=304.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+...+..++..+|.++..++.+|..++..|++++|+.+|++++..+|.++.+++.+|.+++..|++++|+..|++++..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 56677777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
+|.+ ..+++.+|.++..+|++++|+..|++++..+|++. .++..++.++..
T Consensus 90 ~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------- 143 (450)
T 2y4t_A 90 KMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------- 143 (450)
T ss_dssp CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------------
Confidence 8887 67788888888888888888888888888888776 555555544222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
..++.+|.++...|++++|+.+|.+++. ..|....+++.+
T Consensus 144 -------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l 183 (450)
T 2y4t_A 144 -------------------------------------QRLRSQALNAFGSGDYTAAIAFLDKILE---VCVWDAELRELR 183 (450)
T ss_dssp -------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 2344566677778888888888888887 456777889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHH
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAA 428 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A 428 (1093)
|.++...|++++|+.+|++++..+|.++.++..+|.+|...|++++|+..|++++...|++...+..+..+.
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-------- 255 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK-------- 255 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999988776654432
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1093)
....+..+|.++...|++++|+.+|++++...
T Consensus 256 ------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------ 287 (450)
T 2y4t_A 256 ------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTE------------------------------ 287 (450)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------
T ss_pred ------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------------------------------
Confidence 02334567888999999999999999998842
Q ss_pred hhhccCCCCcCCCCch----HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 509 HRFENDGNHVELPWNK----VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1093)
Q Consensus 509 ~~l~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (1093)
|.+ ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.+|++
T Consensus 288 -------------p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 288 -------------PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 223 457888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHhh------------hhhhccc-----chHHHHHHHHH-hhhcCCC
Q 001357 585 ALKVNGKYPNALSMLG------------DLELKND-----DWVKAKETFRA-ASDATDG 625 (1093)
Q Consensus 585 al~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~l~~~~~ 625 (1093)
++.++|+++.++..++ .+|...| ...++...|.+ ++...|+
T Consensus 355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998 4455555 45666777775 5555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-30 Score=300.41 Aligned_cols=395 Identities=17% Similarity=0.183 Sum_probs=306.5
Q ss_pred CCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001357 23 PRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1093)
Q Consensus 23 p~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1093)
|.....+.+++...+.+...|+.+|..|++.|++++|+.+|++++...+. ...++..+|.+|..+|+..
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~l~~~~~~~g~~~-- 77 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------NYIAYYRRATVFLAMGKSK-- 77 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHTTCHH--
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---------cHHHHHHHHHHHHHCCCHH--
Confidence 33455666777778888889999999999999999999999988754332 2567888898998888776
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH-----------
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQ----------- 168 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l----------- 168 (1093)
+|+..|.+++..+|.++.+++.+|.+|...|++++|+..|++++..+|++. .++..+
T Consensus 78 ---------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 148 (450)
T 2y4t_A 78 ---------AALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRS 148 (450)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999887 766555
Q ss_pred -HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001357 169 -ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1093)
Q Consensus 169 -a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1093)
|.++...|++++|+.+|++++...|.+ ..+++.+|.+|...|++++|+..|.+++..+|.++.++..+|.++...|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD- 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Confidence 666888899999999999998888888 67788889999999999999999999988888888888899988888888
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1093)
+++|+..|.+++..+|.+..++..+..+. ....+..+|.++...|++++|+.+
T Consensus 227 --~~~A~~~~~~~~~~~p~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 227 --HELSLSEVRECLKLDQDHKRCFAHYKQVK-------------------------KLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp --HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCCChHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88899999998888888887766553321 113455678888999999999999
Q ss_pred HHHHHHhcCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 328 YMASVKEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1093)
Q Consensus 328 ~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 406 (1093)
|.+++...+..+.. ..++..+|.++...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.++
T Consensus 280 ~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99998743221111 34678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH------------H-hcC-----CHHHHHHHHHH-HHHHHHhcCCCCC-----HHHHHHHHHHHHHcC
Q 001357 407 PRDAQAFIDLGEL------------L-ISS-----DTGAALDAFKT-ARTLLKKAGEEVP-----IEVLNNIGVIHFEKG 462 (1093)
Q Consensus 407 p~~~~~~~~la~~------------~-~~~-----~~~~A~~~~~~-a~~~~~~~~~~~~-----~~~~~~la~~~~~~g 462 (1093)
|++..++..++.+ | ..| ...++...|.+ ++...|+...... ...+..++.+|-.++
T Consensus 360 p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~ 439 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888844 3 334 45666777776 6666555432211 235555666666666
Q ss_pred CHHH
Q 001357 463 EFES 466 (1093)
Q Consensus 463 ~~~~ 466 (1093)
+.++
T Consensus 440 d~~~ 443 (450)
T 2y4t_A 440 DPEM 443 (450)
T ss_dssp GGGG
T ss_pred CHHH
Confidence 6544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-28 Score=273.70 Aligned_cols=349 Identities=19% Similarity=0.182 Sum_probs=272.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..++.+|.+++..|++++|+.+|++++..+|+++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-TAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 45666666777777777777777777766666666666666666666666666666666666666666 45566666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 208 YKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
...|++++|+..|++++..+| ++..++..++.++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------------------------ 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------------------------
Confidence 666666666666666666666 55554444443211
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 001357 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1093)
Q Consensus 285 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1093)
...+..+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+..
T Consensus 120 --------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 176 (359)
T 3ieg_A 120 --------------------MQRLRSQALDAFDGADYTAAITFLDKILE---VCVWDAELRELRAECFIKEGEPRKAISD 176 (359)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 12355677888889999999999999987 4567778899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
|.+++...|.++.++..+|.++...|++++|+..|++++...|++..++..+..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------------------------ 232 (359)
T 3ieg_A 177 LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK------------------------ 232 (359)
T ss_dssp HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999887665443322
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch
Q 001357 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1093)
Q Consensus 445 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (1093)
.......+|.++...|++++|+..|++++...+. .....
T Consensus 233 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------------------------------~~~~~ 271 (359)
T 3ieg_A 233 --KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS---------------------------------------VAEYT 271 (359)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------SHHHH
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------------------------------------chHHH
Confidence 1334556788999999999999999999884320 00012
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhh
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 604 (1093)
..++..+|.++...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+|++++.++|+++.++..++.++.
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 24577899999999999999999999999999999999999999999999999999999999999999999998888866
Q ss_pred ccc
Q 001357 605 KND 607 (1093)
Q Consensus 605 ~~g 607 (1093)
..+
T Consensus 352 ~~~ 354 (359)
T 3ieg_A 352 LLK 354 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-28 Score=272.67 Aligned_cols=320 Identities=17% Similarity=0.175 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
+..+..+|..|...|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++..+|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLA-----------DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 457788999999988877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHP---SCPGAIRLGI------------GLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
.++..+|.++...|++++|+..|++++...| .+ ..++..+ |.++...|++++|+..|.+++..+
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 66 5555555 799999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH
Q 001357 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1093)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1093)
|.++.++..+|.++...|+ +++|+..+.+++..+|.++.++..+|.++...|++++|...+..++...+. ...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~ 224 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGE---PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRC 224 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHH
T ss_pred CCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---chHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999977643 3333
Q ss_pred H------------HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 308 Y------------YNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 308 ~------------~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1093)
+ ..+|.++...|++++|+..|.+++...+..+.. ..++..+|.++...|++++|+.+|++++..+|+
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3 244888999999999999999998854322111 134667899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
++.++..+|.++...|++++|+..|++++.++|++..++..++.+.
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888776
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=289.93 Aligned_cols=393 Identities=17% Similarity=0.122 Sum_probs=251.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEA---------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--- 194 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--- 194 (1093)
....+..+|.++...|++++|+..|++++.+ +|....+|..+|.+|+.+|++++|+.+|++++.+.+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3566778999999999999999999999876 5777889999999999999999999999999987421
Q ss_pred ----ChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 195 ----CPGAIRLGIGLCRYKLG--QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 195 ----~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
..+.++..+|.++...| ++++|+.+|++++.++|+++.++..++.++...++.+...+|+..|++++.++|.++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 12567778887777654 699999999999999999999999999998877665557889999999999999998
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
.++..++..+...+ ...|++++|+.+|++++. ..|....++..+
T Consensus 210 ~~~~~l~~~~~~~~---------------------------------~~~~~~~~a~~~~~~al~---~~~~~~~~~~~l 253 (472)
T 4g1t_A 210 YLKVLLALKLHKMR---------------------------------EEGEEEGEGEKLVEEALE---KAPGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHHCC---------------------------------------CHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------------hhhhHHHHHHHHHHHHHH---hCccHHHHHHHH
Confidence 87776665544332 223455666666666665 445666667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1093)
|.+|...|++++|+..|.++++.+|+++.++..+|.+|...+....+... ...+... ..+.++.
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRE---------------NGMYGKRKLLELIGH 318 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHH---------------HHHHHHHHHHhhHHH
Confidence 77777777777777777777777777777777777776543211111000 0011111 1223455
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001357 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1093)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1093)
|+..+.+++.+.|. ...++..+|.++...|++++|+.+|++++...+
T Consensus 319 A~~~~~~a~~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---------------------------- 365 (472)
T 4g1t_A 319 AVAHLKKADEANDN-----LFRVCSILASLHALADQYEEAEYYFQKEFSKEL---------------------------- 365 (472)
T ss_dssp HHHHHHHHHHHCTT-----TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC----------------------------
T ss_pred HHHHHHHHhhcCCc-----hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC----------------------------
Confidence 55566655555333 234455666666666666666666666665321
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHH-HHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 508 FHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEAL 586 (1093)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 586 (1093)
.+.....+++.++.+ +...|++++|+..|.+++.+.|.+...... ...+..++.+++
T Consensus 366 ------------~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l 423 (472)
T 4g1t_A 366 ------------TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRL 423 (472)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHH
Confidence 000112234444433 345666667777777777666665432211 223344566666
Q ss_pred HHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 587 KVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 587 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
..+|.++.++..+|.+|...|++++|+..|+++++..+.
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 677777777777777777777777777777777765544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=284.24 Aligned_cols=399 Identities=16% Similarity=0.113 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhc---------CCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI---------DMHEPSTWVGKGQLLLAKGEVEQASSAF 151 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~~ 151 (1093)
.+..+++.||.+|..+|+.+ +|+..|++++.+ +|....+|..+|.+|...|++++|+.+|
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~-----------eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNE-----------AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34678899999999999877 788888888765 6777788999999999999999999999
Q ss_pred HHHHHhC--------CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---cCCHHHHHH
Q 001357 152 KIVLEAD--------RDNVPALLGQACVEFNR--GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK---LGQLGKARQ 218 (1093)
Q Consensus 152 ~~al~~~--------p~~~~a~~~la~~~~~~--g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~---~g~~~~A~~ 218 (1093)
++++.+. +..+.++..+|.++... ++|++|+.+|++++..+|++ +.++..+|.++.. .++.++|+.
T Consensus 118 ~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9998763 34577888887776654 57999999999999999999 7778888887654 577789999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHhhh-HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 001357 219 AFQRALQLDPENVEALVALAVMDLQANE-AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1093)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~~~~-~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1093)
.|++++.++|++..++..++..+...+. .+.+.+|+..+++++..+|.++.++..+|.+|...|++++|+..+.+++..
T Consensus 197 ~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 197 PLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 9999999999999999999887766543 234889999999999999999999999999999999999999999999876
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001357 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (1093)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (1093)
. |..+.+++.+|.+|...+....+.. ....+......+.++.|+..|++++..+|.+..
T Consensus 277 ~---p~~~~~~~~lg~~y~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 335 (472)
T 4g1t_A 277 I---PNNAYLHCQIGCCYRAKVFQVMNLR------------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335 (472)
T ss_dssp S---TTCHHHHHHHHHHHHHHHHHHHHC------------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred C---CChHHHHHHHHHHHHHHHHHhhhHH------------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence 5 6677888888888764322211111 111222223344567888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV- 456 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~- 456 (1093)
++..+|.+|...|++++|+.+|++++...|++.... .+++.+|.
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~-----------------------------------~~~~~~~~~ 380 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ-----------------------------------LLHLRYGNF 380 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH-----------------------------------HHHHHHHHH
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH-----------------------------------HHHHHHHHH
Confidence 888888888888888888888888888776543211 11222232
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001357 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1093)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1093)
.+...|++++|+..|.+++.+. |......
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~i~-------------------------------------------~~~~~~~-------- 409 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVKIN-------------------------------------------QKSREKE-------- 409 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHHSC-------------------------------------------CCCHHHH--------
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-------------------------------------------cccHHHH--------
Confidence 2345677777777777777632 2222111
Q ss_pred hcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhh
Q 001357 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1093)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 600 (1093)
+....+..++.+++..+|.++.++..+|.++...|++++|+.+|+++++++|.+|.+...+|
T Consensus 410 --~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 --KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp --HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred --HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 11233455677778888888888888888888888888888888888888888888877766
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=258.32 Aligned_cols=302 Identities=17% Similarity=0.224 Sum_probs=276.5
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001357 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1093)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1093)
...+...|.++..++.+|..++..|++++|+.+|++++..+|.+..++..++.+++..|++++|+.++.+++..+|.+ +
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 90 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-P 90 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-T
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-H
Confidence 345556688899999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 198 AIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 198 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
.+++.+|.++...| ++++|+..|.+++..+|.+..++..+|.++...|+ +.+|+..|.+++...|.+..++..++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE---HDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 78999999999999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC------CCCchhhHHHHHH
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK------PHEFIFPYYGLGQ 350 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~ 350 (1093)
++...|++++|+.++.+++... |..+.+++.+|.++...|++++|+.+|.+++...+. .+....++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999654 667899999999999999999999999999985421 1555678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTG 426 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~ 426 (1093)
++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++.++|+++.++..++.++ ..|+.+
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988 555543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-24 Score=250.43 Aligned_cols=378 Identities=16% Similarity=0.124 Sum_probs=270.8
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLA----KGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEF 184 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~ 184 (1093)
++..+.++.. +.++.+++.+|.+|+. .+++++|+..|++++.. .++.+++.+|.+|.. .+++++|+.+
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4555555543 6788999999999998 89999999999999876 578999999999999 8999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hhhHHhHHHHHHH
Q 001357 185 YKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEK 256 (1093)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~ 256 (1093)
|+++.... + +..++.+|.+|.. .+++++|+..|+++... +++.+++.||.+|.. .++ +.+|+..
T Consensus 102 ~~~a~~~~--~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~ 173 (490)
T 2xm6_A 102 YKKAALKG--L-PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD---YVMAREW 173 (490)
T ss_dssp HHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHH
T ss_pred HHHHHHCC--C-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHH
Confidence 99998753 4 5678889999998 88999999999998764 578889999988887 555 8888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHh----cCCHHHHHHHH
Q 001357 257 MQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYY 328 (1093)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 328 (1093)
|+++... .++.+++.++.+|.. .+++++|+.++.++... ..+.+++.+|.+|.. .+++++|+.+|
T Consensus 174 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 YSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 8888775 467777777777777 77777777777777653 235677777777775 67777777777
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 001357 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL-----GQIEKAQELL 399 (1093)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~l 399 (1093)
.++.. .....+++.+|.++.. .+++++|+.+|+++... .++.+++.+|.+|... +++++|+.+|
T Consensus 247 ~~a~~-----~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 247 SQSAE-----QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHT-----TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 77764 2345566777777776 67777777777776653 4566777777777766 6777777777
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 001357 400 RKAAKIDPRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSF 471 (1093)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~ 471 (1093)
++++.. .++.+++.++.++ ..| ++++|+.+|+++... ..+..++++|.+|.. .+++++|+.+|
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 776654 3456666677666 433 566666666666553 135666666666666 66666666666
Q ss_pred HHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh----cCChHHHHHH
Q 001357 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVL 547 (1093)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 547 (1093)
+++... ..+.+++++|.+|.. .+++++|..+
T Consensus 391 ~~A~~~---------------------------------------------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 391 RKAAEQ---------------------------------------------GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHT---------------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHhC---------------------------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 666552 134566666666665 5666666666
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHHH
Q 001357 548 YRLILFKYQD---YVDAYLRLAAIAK 570 (1093)
Q Consensus 548 ~~~~l~~~p~---~~~~~~~la~~~~ 570 (1093)
|++++...|+ ++.+...++.++.
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 6666666633 5555555555433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-23 Score=246.45 Aligned_cols=394 Identities=17% Similarity=0.137 Sum_probs=343.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHH
Q 001357 147 ASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQ 218 (1093)
Q Consensus 147 A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~ 218 (1093)
++..+.++.. +.++.+++.+|.++.. .+++++|+.+|++++.. .+ +.+++.+|.+|.. .+++++|+.
T Consensus 26 ~~~~~~~~a~--~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 26 NLEQLKQKAE--SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GY-TPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 4555665544 6789999999999999 89999999999999986 34 6788999999999 999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHH----hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCChHHHHHH
Q 001357 219 AFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF----TGQHFLVEQL 290 (1093)
Q Consensus 219 ~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 290 (1093)
+|+++... .++.+++.||.++.. .++ +.+|+..|+++... .++.+++.||.+|.. .+++++|+.+
T Consensus 101 ~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 101 WYKKAALK--GLPQAQQNLGVMYHEGNGVKVD---KAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999875 688999999999988 666 99999999999875 578999999999998 8999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSAL 362 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 362 (1093)
++++... .++.+++.+|.+|.. .+++++|+.+|.++.. .....+++.+|.+|.. .+++++|+
T Consensus 174 ~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 174 YSKAAEQ-----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-----SGDELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHC-----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 9999874 357899999999998 8999999999999987 2456889999999997 89999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hc-----CCHHHHHHHH
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS-----SDTGAALDAF 432 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~-----~~~~~A~~~~ 432 (1093)
.+|++++.. .++.+++.+|.+|.. .+++++|+.+|+++... .++.+++.++.++ .. +++++|+.+|
T Consensus 244 ~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 244 VLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 999999875 578899999999999 89999999999999865 6789999999999 65 7999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001357 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKG---EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1093)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1093)
+++... .++..++++|.+|...| ++++|+.+|++++..
T Consensus 320 ~~a~~~-------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-------------------------------- 360 (490)
T 2xm6_A 320 TKSAEQ-------GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-------------------------------- 360 (490)
T ss_dssp HHHHHT-------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------------------------------
T ss_pred HHHHhc-------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------------------------------
Confidence 998874 24789999999999877 899999999999873
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCCHHHHHHH
Q 001357 510 RFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIEL 581 (1093)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 581 (1093)
.++.+++++|.+|.. .+++++|+.+|++++.. .++.+++.+|.++.. .+++.+|..+
T Consensus 361 -------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 361 -------------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 367899999999999 89999999999999875 468999999999998 8999999999
Q ss_pred HHHHHHHcCC---ChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 582 VNEALKVNGK---YPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 582 ~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
|++++..+|+ ++.+..+++.++.. +...|.....+.++.
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHH
Confidence 9999999954 88899999988664 344444444444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=248.70 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..++..++..++..|+.. +|+.+|++++..+|.++.++..++.+++..|++++|+..|.+++..+|.++
T Consensus 22 ~~~~~~~a~~~~~~g~~~-----------~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFK-----------MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp CTTHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 446777888888888776 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 163 ~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
.+++.+|.++...| ++++|+.+|++++..+|.+ ..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999999999 9999999999999999998 678999999999999999999999999999999999999999999
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC------CCCchHHHHHHHHHH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSY 315 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~ 315 (1093)
...|+ +++|+..|.+++..+|.++.++..++.++...|++++|+..+.+++...+. .+..+.+++.+|.++
T Consensus 170 ~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 170 GLTNN---SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHhh---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999976422 145568999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY-VQLGQIE 393 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~ 393 (1093)
...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++..+|+++.++..++.++ ...|+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999999999998 45677889999999999999999999999999999999999999999998 4556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-24 Score=256.89 Aligned_cols=430 Identities=13% Similarity=0.058 Sum_probs=334.6
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001357 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1093)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1093)
|++++..+|.+..+|..++.. ...|++++|..+|++++..+|.+..+|..++..+...|++++|..+|++++...| +
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~- 78 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H- 78 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-
Confidence 678889999999999999984 7899999999999999999999999999999999999999999999999999999 4
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHH----HHHHHHhh---CCCcHHHHHHHHHHHHH---------hhhHHhHHHHHHHHHH
Q 001357 197 GAIRLGIGL-CRYKLGQLGKARQ----AFQRALQL---DPENVEALVALAVMDLQ---------ANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 197 ~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~a~~~la~~~~~---------~~~~~~~~~Al~~~~~ 259 (1093)
..+|+.++. .....|+++.|+. +|++++.. +|.+...|..++.+... .|+ ++.|...|++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~a~~~y~~ 155 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR---ITAVRRVYQR 155 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH---HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH---HHHHHHHHHH
Confidence 456777774 4456788877765 88888764 56778888888877665 455 9999999999
Q ss_pred HHHhCCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH---Hh
Q 001357 260 AFEIYPYCA--MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV---KE 334 (1093)
Q Consensus 260 al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~ 334 (1093)
++. .|... ..+...+......|. ...... +....++|..|...|.... ..
T Consensus 156 al~-~P~~~~~~~~~~~~~~e~~~~~-----~~~~~~-------------------l~~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCV-NPMINIEQLWRDYNKYEEGINI-----HLAKKM-------------------IEDRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTT-SCCTTHHHHHHHHHHHHHHHCH-----HHHHHH-------------------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-chhhhHHHHHHHHHHHHHhhch-----hHHHHH-------------------HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999 56543 222222221111110 000000 0112345667766665521 11
Q ss_pred cCC-----CCCc-------hhhHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------
Q 001357 335 INK-----PHEF-------IFPYYGLGQVQLKL----GDF----RSALTNFEKVLEIYPDNCETLKALGHIYVQ------ 388 (1093)
Q Consensus 335 ~~~-----~~~~-------~~~~~~la~~~~~~----g~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------ 388 (1093)
+.. +|.. ...|.......... ++. ..++..|++++..+|.++.+|+.+|.++..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhh
Confidence 111 2221 12333333222221 232 478899999999999999999999999986
Q ss_pred -cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001357 389 -LGQIE-------KAQELLRKAAK-IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1093)
Q Consensus 389 -~g~~~-------~A~~~l~~~l~-~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 458 (1093)
.|+++ +|+.+|++++. ..|++..+|+.++.++ ..|++++|...|++++.+.|.. ...++..++.++
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~ 366 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID----PTLVYIQYMKFA 366 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC----HHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC----chHHHHHHHHHH
Confidence 79987 99999999997 7999999999999999 9999999999999999864321 136899999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH-HHh
Q 001357 459 FEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQ 537 (1093)
Q Consensus 459 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~-~~~ 537 (1093)
...|+++.|+.+|.+++.. .|....++...+.+ +..
T Consensus 367 ~~~~~~~~A~~~~~~Al~~-------------------------------------------~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKARED-------------------------------------------ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------TTCCTHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-------------------------------------------cCCchHHHHHHHHHHHHH
Confidence 9999999999999999984 33344555555544 446
Q ss_pred cCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh----HHHHhhhhhhcccchHHHH
Q 001357 538 IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----ALSMLGDLELKNDDWVKAK 613 (1093)
Q Consensus 538 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~g~~~~A~ 613 (1093)
.|++++|..+|+++++.+|+++.+|..++.++...|++++|..+|++++...|.++. +|..++.+....|+.+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999999999999999999999999999999999999999877665 8888888889999999999
Q ss_pred HHHHHhhhcCC
Q 001357 614 ETFRAASDATD 624 (1093)
Q Consensus 614 ~~~~~~l~~~~ 624 (1093)
.++.++++..|
T Consensus 484 ~~~~r~~~~~p 494 (530)
T 2ooe_A 484 KVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHTH
T ss_pred HHHHHHHHHCc
Confidence 99999998776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=255.08 Aligned_cols=288 Identities=15% Similarity=0.178 Sum_probs=192.5
Q ss_pred HHHHHHH-HHHHHHhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 109 HFILATQ-YYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 109 ~~~~A~~-~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
+|.+|+. .|++++...|.++ ..++.+|.+++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.
T Consensus 40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 119 (368)
T 1fch_A 40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119 (368)
T ss_dssp ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 3458999 9999999888774 5689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------------HHHHHHhhhH
Q 001357 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------------AVMDLQANEA 247 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------------a~~~~~~~~~ 247 (1093)
.|++++..+|.+ ..++..+|.++...|++++|+..|.+++..+|.+...+..+ +.++ ..|+
T Consensus 120 ~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 196 (368)
T 1fch_A 120 ALRRCLELKPDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL- 196 (368)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH-
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc-
Confidence 999999999998 77899999999999999999999999999999887665433 2222 2222
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1093)
+.+|+..|.+++..+|.. + .+.+++.+|.++...|++++|+.+
T Consensus 197 --~~~A~~~~~~a~~~~p~~----------------------------------~-~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 197 --FLEVKELFLAAVRLDPTS----------------------------------I-DPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp --HHHHHHHHHHHHHHSTTS----------------------------------C-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCcCc----------------------------------c-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443333330 0 234444455555555555555555
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 328 YMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 328 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
|.+++. ..|....+++.+|.++...|++++|+.+|++++..+|.++.++..+|.+|...|++++|+.+|++++.+.|
T Consensus 240 ~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 240 FTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 555554 23444455555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CC-----------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 408 RD-----------AQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 408 ~~-----------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
++ ..+|..++.++ ..|+++.|..++.+++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence 44 45555555555 5555555555555444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-23 Score=247.11 Aligned_cols=224 Identities=8% Similarity=0.044 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HcCCChhHHHHhhhhhhcc
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKA-------RNNLQ-------LSIELVNEALK-VNGKYPNALSMLGDLELKN 606 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~ 606 (1093)
..++..|++++..+|.++.+|+.++.++.. .|+++ +|+.+|++++. ..|++..+|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999886 79987 99999999997 8999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H
Q 001357 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV-L 685 (1093)
Q Consensus 607 g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~-~ 685 (1093)
|++++|...|++++...|.....+++.++.+ +... |++++|+.+|.++++..|.+...+...+.+ +
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 401 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHH-HHHh------------cCHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 9999999999999998776323577778877 6666 999999999999999999887777766665 3
Q ss_pred HhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhh
Q 001357 686 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEA 763 (1093)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~ 763 (1093)
...|++++|+.+|+++++..| +++.+|.++|.++...|++++|..+|++++...+.++. ..+|...+......
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p-----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHcCChhHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999998 78999999999999999999999999999997544432 56888888888889
Q ss_pred ccHHHHHHHHHHHHHhCCCC
Q 001357 764 EQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 764 g~~~~A~~~~~~al~~~P~~ 783 (1093)
|+.+.+..++.++++..|.+
T Consensus 477 G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 477 GDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp SCHHHHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHCchh
Confidence 99999999999999999964
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=250.22 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=251.9
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 137 LLLAKGEVEQASS-AFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 137 ~~~~~g~~~~A~~-~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
++...|+|++|+. .|.+++...|.++ ..++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCc
Confidence 6777888999998 8888888877764 568888999999999999999999999988888 677888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
++++|+..|.+++.++|++..++..+|.++...|+ +.+|+..|.+++..+|.+...+..++....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESL---QRQACEILRDWLRYTPAYAHLVTPAEEGAG------------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSTTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcCcHHHHHHHHHHhh------------
Confidence 99999999999999999999999999999988888 888999999999888887755543322100
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
.......+..++.++ ..|++++|+.+|.+++.. .|. ...++..+|.++...|++++|+.+|++++
T Consensus 178 ---------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 178 ---------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL---DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp -----------------CTTHHHH-HHHHHHHHHHHHHHHHHH---STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh---CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 000112333556666 889999999999999984 445 67889999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC----
Q 001357 370 EIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE---- 444 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~---- 444 (1093)
..+|.++.++..+|.++...|++++|+..|++++...|.++.++..+|.++ ..|++++|+.+|++++.+.|....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999887522
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 445 --EVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 445 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
.....++..+|.++...|++++|..++.+++.
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 22378999999999999999999999987765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=244.10 Aligned_cols=278 Identities=13% Similarity=0.096 Sum_probs=192.8
Q ss_pred HHHHHHHHhcCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 114 TQYYNKASRIDMHEP----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
...+.......+.++ ..++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555555555554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHHhhhHHhHHHHHHHHHH
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL----------AVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l----------a~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++..++..+ +.++...|+ +.+|+..|.+
T Consensus 127 ~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 202 (365)
T 4eqf_A 127 ELQPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV---LEGVKELYLE 202 (365)
T ss_dssp HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH---HHHHHHHHHH
T ss_pred hcCCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh---HHHHHHHHHH
Confidence 999999 78899999999999999999999999999999877666555 777777777 8888888888
Q ss_pred HHHhCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 260 AFEIYPY--CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 260 al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
++..+|. ++.++..+|.++. ..|++++|+.+|.+++. .
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~-------------------------------------~~g~~~~A~~~~~~al~---~ 242 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFH-------------------------------------LSGEFNRAIDAFNAALT---V 242 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHH-------------------------------------HHTCHHHHHHHHHHHHH---H
T ss_pred HHHhCcCccCHHHHHHHHHHHH-------------------------------------HCCCHHHHHHHHHHHHH---h
Confidence 8888777 5555555555544 44555555555555554 2
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------
Q 001357 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--------- 408 (1093)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~--------- 408 (1093)
.|....++..+|.++...|++++|+.+|++++..+|+++.++..+|.+|...|++++|+.+|++++.+.|.
T Consensus 243 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 322 (365)
T 4eqf_A 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccch
Confidence 34444555555555555555555666665555555555556666666666666666666666666555544
Q ss_pred ---CHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001357 409 ---DAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1093)
Q Consensus 409 ---~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (1093)
+..+|..++.++ ..|+.+.+.....+.
T Consensus 323 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 323 PAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp ----CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 244556666666 566665555554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=244.21 Aligned_cols=294 Identities=19% Similarity=0.192 Sum_probs=241.8
Q ss_pred HHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 149 SAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1093)
Q Consensus 149 ~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1093)
..+...+...+.++ ..++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.++..+|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444444444 459999999999999999999999999999998 7789999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc
Q 001357 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1093)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 304 (1093)
.++|++..++..+|.++...|+ +++|+..|.+++.++|.+..++..++ ..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~ 176 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSH---QQDACEALKNWIKQNPKYKYLVKNKK---------------------------GS 176 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCHHHHCC----------------------------------
T ss_pred hcCCCCHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCccchHHHhhhc---------------------------cc
Confidence 9999999999999999999998 99999999999999887765544332 11
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1093)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1093)
...+..+|.++...|++++|+.+|.+++.. .|. ...+++.+|.++...|++++|+.+|++++...|.++.++..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 253 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL 253 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 245677899999999999999999999984 455 678899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-------CCHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-------VPIEVLNNI 454 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~~~~~~l 454 (1093)
|.+|...|++++|+..|++++..+|+++.++..+|.++ ..|++++|+.+|++++.+.|..... ....++..+
T Consensus 254 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l 333 (365)
T 4eqf_A 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999998874332 125789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 001357 455 GVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 455 a~~~~~~g~~~~A~~~~~~al~ 476 (1093)
+.++...|+.+.+.....+.+.
T Consensus 334 ~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 334 RIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHcCcHHHHHHHHHhhHH
Confidence 9999999999999888776544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=239.91 Aligned_cols=261 Identities=11% Similarity=0.009 Sum_probs=230.0
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHH
Q 001357 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR-YSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~Al~~~~~al~~~p~~~~~ 198 (1093)
++.++|.++.+|..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++.++|++ ..
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-~~ 167 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-YQ 167 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-HH
Confidence 5677888999999999999999999999999999999999999999999999999997 999999999999999999 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
+|+.+|.++..+|++++|+..|++++.++|++..+|..+|.++...|+ +++|+..|.+++.++|.+..+|+.+|.++
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~---~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL---WDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998 99999999999999999997777777777
Q ss_pred HH-cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC-
Q 001357 279 FF-TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG- 356 (1093)
Q Consensus 279 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g- 356 (1093)
.. .|.+++|+ .+.++.+|.+++. ..|.+..+|+.++.++...|
T Consensus 245 ~~l~~~~~eA~--------------------------------~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 245 SNTTGYNDRAV--------------------------------LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTTCSCSHHH--------------------------------HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCG
T ss_pred HHhcCcchHHH--------------------------------HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCc
Confidence 66 33323332 2333577777776 55777788888888888877
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHH
Q 001357 357 -DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG---------QIEKAQELLRKA-AKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 357 -~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~l~~~-l~~~p~~~~~~~~la~~~ 420 (1093)
++++|+..+.++ +.+|++..++..+|.+|...| .+++|+.+|+++ ++++|.....|..++..+
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 688899888887 888889999999999998874 258899999999 899999999998888876
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=233.00 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=192.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
+...++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..++..+|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH--------------HH-HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL--------------AV-MDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l--------------a~-~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
+...|++++|+..|.+++..+|.+...+..+ +. ++...|+ +.+|+..+.+++..+|.++.+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~- 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE---YRECRTLLHAALEMNPNDAQL- 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH---HHHHHHHHHHHHHHSTTCHHH-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc---HHHHHHHHHHHHhhCCCCHHH-
Confidence 9999999999999999999999987776665 33 3444444 666666666666666655544
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1093)
+..+|.++...|++++|+.+|.+++. ..|....++..+|.+
T Consensus 175 ------------------------------------~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 175 ------------------------------------HASLGVLYNLSNNYDSAAANLRRAVE---LRPDDAQLWNKLGAT 215 (327)
T ss_dssp ------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHH
Confidence 44444444444555555555555544 234444555666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHH
Q 001357 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------------DAQAFIDLGEL 419 (1093)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~------------~~~~~~~la~~ 419 (1093)
+...|++++|+.+|++++...|.+..++..+|.++...|++++|+..|++++...|. +..++..++.+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666665 45556666666
Q ss_pred H-hcCCHHHHHHHHHHHHHHHHh
Q 001357 420 L-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 420 ~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+ ..|+++.|...+++++...+.
T Consensus 296 ~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp HHHTTCHHHHHHHTTCCSHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhcch
Confidence 6 566666666665555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=235.51 Aligned_cols=259 Identities=9% Similarity=-0.017 Sum_probs=240.6
Q ss_pred CcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHcCCChhH
Q 001357 517 HVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN-LQLSIELVNEALKVNGKYPNA 595 (1093)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~ 595 (1093)
.+...|....+++.++.++...|++++|+..|.+++..+|++..+|+.+|.++...|+ +++|+.+|++++.++|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3457888999999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCH
Q 001357 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1093)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 675 (1093)
|+++|.++...|++++|+..|++++...|. +..++..+|.+ +... |++++|+.+|++++.++|++.
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~-~~~~------------g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999987 88999999999 9888 999999999999999999999
Q ss_pred HHHHHHHHHHHh-cCCchhH-----HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhcCC
Q 001357 676 YAANGAGVVLAE-KGQFDVS-----KDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG--NFALAMKMYQNCLRKFYYN 747 (1093)
Q Consensus 676 ~a~~~la~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~ 747 (1093)
.+|+.+|.++.. .|.+++| +..|.+++...| ++..+|+++|.++...| ++.+|+..++.+ .. .+
T Consensus 235 ~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-----~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p 306 (382)
T 2h6f_A 235 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SH 306 (382)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TC
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CC
Confidence 999999999999 6666888 599999999998 78999999999999988 699999999887 44 66
Q ss_pred CCHHHHHHHHHHHHhhc--------c-HHHHHHHHHHH-HHhCCCCcchhhHHHHHHHHH
Q 001357 748 TDAQILLYLARTHYEAE--------Q-WQDCKKSLLRA-IHLAPSNYTLRFDAGVAMQKF 797 (1093)
Q Consensus 748 ~~~~~l~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~P~~~~~~~~la~~~~~~ 797 (1093)
.++.++..+|.+|...| + +++|+.+|+++ ++++|.....|..++.++..+
T Consensus 307 ~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 307 SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 67999999999999985 3 58999999999 999999999999888876554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=229.68 Aligned_cols=274 Identities=13% Similarity=0.081 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...++.+|..+...|++++|+.+|++++. ..|....+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------------------------------------------~~~~~~~~ 57 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ-------------------------------------------AAPEREEA 57 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------------------------HCTTCHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------------------hCCCCHHH
Confidence 35677889999999999999999999887 34667888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh--------
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------- 599 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 599 (1093)
++.+|.++...|++++|+..|.+++..+|.+..++..+|.++...|++++|+.++++++...|.+..++..+
T Consensus 58 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (327)
T 3cv0_A 58 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDID 137 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred ------hh-hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCC
Q 001357 600 ------GD-LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHT 672 (1093)
Q Consensus 600 ------~~-~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 672 (1093)
+. ++...|++++|+..|.+++...|. +..++..+|.+ |... |++++|+.+|.+++..+|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~-~~~~------------~~~~~A~~~~~~~~~~~~ 203 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL-YNLS------------NNYDSAAANLRRAVELRP 203 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHh------------ccHHHHHHHHHHHHHhCC
Confidence 66 688889999999999999988776 77788888888 8887 889999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC----
Q 001357 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT---- 748 (1093)
Q Consensus 673 ~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---- 748 (1093)
.++.++..+|.++...|++++|+.+|+++++..| .++.+++++|.+|...|++++|+..|++++...|...
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 9999999999999999999999999999999887 6788899999999999999999999999998865411
Q ss_pred ------CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 749 ------DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 749 ------~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
++.++..+|.++...|++++|..++++++...|.+
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 46788899999999999999999988877776643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-19 Score=221.27 Aligned_cols=459 Identities=12% Similarity=0.069 Sum_probs=326.1
Q ss_pred cCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHH
Q 001357 36 EQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQ 115 (1093)
Q Consensus 36 e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~ 115 (1093)
+..+++---..+++|...|.+.+|+.+|++++-. +. .|++. ..+..+..++.+....++.. +.+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s-~fs~n--~~LqnlLi~tAIkaD~~Rv~-----------eyI~ 1045 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NS-VFSEH--RNLQNLLILTAIKADRTRVM-----------EYIN 1045 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CC-ccccc--HHHHHHHHHHHHHhChhhHH-----------HHHH
Confidence 4556666677889999999999999999999733 22 23333 23333333444444333222 3333
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.++..+ .-..|.++...|.+++|..+|+++- .+..+ +...+...|++++|..+++++ +.
T Consensus 1046 kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~ 1104 (1630)
T 1xi4_A 1046 RLDNYD---------APDIANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NE 1104 (1630)
T ss_pred Hhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CC
Confidence 333222 2238999999999999999999972 11222 222234889999999999866 33
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLA 275 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la 275 (1093)
+.+|+.+|.++...|++++|+.+|.++ +++..+..++.++...|+ +++|+.+|..+.+..+. +.+-..+|
T Consensus 1105 -p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGk---yEEAIeyL~mArk~~~e-~~Idt~La 1174 (1630)
T 1xi4_A 1105 -PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGN---WEELVKYLQMARKKARE-SYVETELI 1174 (1630)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccc-ccccHHHH
Confidence 778999999999999999999999875 788999999999999999 99999999999988744 33344689
Q ss_pred HHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc
Q 001357 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1093)
Q Consensus 276 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1093)
.+|.+.++++....+. . ......+..+|..+...|+|++|..+|.++- .|..++.++.+.
T Consensus 1175 faYAKl~rleele~fI----~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHL 1234 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh-----------HHHHHHHHHHHh
Confidence 9999999888544332 1 1233567789999999999999999999863 388999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001357 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1093)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (1093)
|+++.|++++.++ .+..+|...+.++...|+|..|..+... +.. ++..+..++..| ..|.+++|+.+++.
T Consensus 1235 ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998 4678999999999999999999988764 333 345566888888 99999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFE--KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (1093)
++.+.+. ...++..+|.++.+ -++.-+++++|...+...+..
T Consensus 1306 aL~Lera-----H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~------------------------------- 1349 (1630)
T 1xi4_A 1306 ALGLERA-----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL------------------------------- 1349 (1630)
T ss_pred HhccChh-----HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh-------------------------------
Confidence 9877543 35677667776654 467778888887766532100
Q ss_pred cCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHHcCCHHHHHH
Q 001357 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------------KYQDYVDAYLRLAAIAKARNNLQLSIE 580 (1093)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------~~p~~~~~~~~la~~~~~~g~~~~A~~ 580 (1093)
..-.....|..+..+|.+-|+++.|+..+-.... ..+.+++.++..+..|. +....++.
T Consensus 1350 -------r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~P~~ln 1420 (1630)
T 1xi4_A 1350 -------RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLN 1420 (1630)
T ss_pred -------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhChHHHH
Confidence 0114677888999999999999999854433221 24566777777777776 34445555
Q ss_pred HHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 581 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
.+..++.-.-+.. ....++.+.+...-+..++..
T Consensus 1421 dLl~~l~~rlD~~----R~V~l~~~~~~l~lik~yl~~ 1454 (1630)
T 1xi4_A 1421 DLLMVLSPRLDHT----RAVNYFSKVKQLPLVKPYLRS 1454 (1630)
T ss_pred HHHHHhhhcCChH----HHHHHHHHcCChHHhHHHHHH
Confidence 5555553221211 122333444555555555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=215.43 Aligned_cols=254 Identities=13% Similarity=0.085 Sum_probs=191.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGI 203 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~l 203 (1093)
++..++..|.+++..|++++|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++. .|.+ ...+++.+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999998 4433 24458899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
|.++...|++++|+..|.+++..+|.+..++..+|.++...|+ +++|+..|.+++..+|.++.++..+|...+..++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN---FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 9999999999999998888888887744445557
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC-----chhhHHHHHHHHHHc
Q 001357 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD---YEKAGLYYMASVKEINKPHE-----FIFPYYGLGQVQLKL 355 (1093)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~ 355 (1093)
+++|+..+.+++... |....+++.+|.++...|+ +++|+..|.+++......+. ...++..+|.++...
T Consensus 158 ~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 777777777777554 4445666667777776666 66677777766654322222 224555566666666
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1093)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1093)
|++++|+.+|++++.++|+++.++..++.+..
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 66666666666666666666666655555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-19 Score=213.91 Aligned_cols=512 Identities=13% Similarity=0.101 Sum_probs=352.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
+|.---..+..|...|.+.+|+.+|++++ ..|+ +...-..++.+..+. +......+..+.-... .-.
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHH
Confidence 33344456777889999999999999998 4444 333333344444443 2233333333221111 233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
+|.++..+|.+++|..+|+++- .+..+ +..++...++ +++|++++.++ +.+.+|+.+|.++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~n---ldrAiE~Aerv-----n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGN---LDRAYEFAERC-----NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhh---HHHHHHHHHhc-----CCHHHHHHHHHHHHhCC
Confidence 8899999999999999999962 22222 2222335555 88888888755 56899999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHH
Q 001357 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1093)
++++|+..|.++ .++..|..+|.++...|+|++|+++|..+.+..+ +. .+...+|.+|.+.+++++ +
T Consensus 1120 ~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~--~Idt~LafaYAKl~rlee-l 1186 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ES--YVETELIFALAKTNRLAE-L 1186 (1630)
T ss_pred CHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cc--cccHHHHHHHHhhcCHHH-H
Confidence 999999999765 4568899999999999999999999999887421 11 223358899999999884 4
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
..| + ..+ +...+..+|..+...|++++|..+|.++ ..|..++.++ ..|+++.|++.+.++.
T Consensus 1187 e~f---I-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~----- 1248 (1630)
T 1xi4_A 1187 EEF---I-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN----- 1248 (1630)
T ss_pred HHH---H-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----
Confidence 444 2 233 4566778999999999999999999986 4788999999 8999999999998872
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCC
Q 001357 442 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELP 521 (1093)
Q Consensus 442 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 521 (1093)
+..+|..++.++...|+|..|..+....+.
T Consensus 1249 -----n~~aWkev~~acve~~Ef~LA~~cgl~Iiv--------------------------------------------- 1278 (1630)
T 1xi4_A 1249 -----STRTWKEVCFACVDGKEFRLAQMCGLHIVV--------------------------------------------- 1278 (1630)
T ss_pred -----CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc---------------------------------------------
Confidence 368889999999999999999988764222
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcC-----CChh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR--NNLQLSIELVNEALKVNG-----KYPN 594 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~ 594 (1093)
.+..+..++..|...|.+++|+.+++.++.++|.+...+..++.++.+- ++..+++++|...+.+.| ....
T Consensus 1279 --~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1279 --HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH
Confidence 4456668899999999999999999999999999999998888887754 577788888888777766 6788
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHhhhc-----------CCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHH
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAASDA-----------TDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----------~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (1093)
+|..+..+|.+.|+|+.|....-..... ....++..+...... |. +....++..
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F-yl--------------~~~P~~lnd 1421 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF-YL--------------EFKPLLLND 1421 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH-HH--------------hhChHHHHH
Confidence 9999999999999999999544332211 111233333334433 33 334455555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+..++.-.-+. .....++...|++.-+..++..+... ++..+--.+..+|....++.. ++..+..
T Consensus 1422 Ll~~l~~rlD~----~R~V~l~~~~~~l~lik~yl~~vq~~-------n~~~Vneal~el~ieeed~~~----Lr~si~~ 1486 (1630)
T 1xi4_A 1422 LLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQNH-------NNKSVNESLNNLFITEEDYQA----LRTSIDA 1486 (1630)
T ss_pred HHHHhhhcCCh----HHHHHHHHHcCChHHhHHHHHHHHHh-------cchhhhHHHHHHhcCccchHH----HHHHHhh
Confidence 55555322111 22344556677777777777666633 355666677777777666532 1112222
Q ss_pred hcCC---------CCHHHH--HHHHHHHH-hhccHHHHHHHHHH
Q 001357 744 FYYN---------TDAQIL--LYLARTHY-EAEQWQDCKKSLLR 775 (1093)
Q Consensus 744 ~~~~---------~~~~~l--~~la~~~~-~~g~~~~A~~~~~~ 775 (1093)
+.+- ..-.++ ..+|..++ +.|+|..|.+.+++
T Consensus 1487 ~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~ 1530 (1630)
T 1xi4_A 1487 YDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK 1530 (1630)
T ss_pred ccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 1110 011222 34444444 45888888887653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=230.06 Aligned_cols=387 Identities=12% Similarity=0.084 Sum_probs=275.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF---RSALTNFEKVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1093)
..+|..++..|++++|+.+|.++.+. ..+.+++.+|.+|...|++ ++|+.+|++++.. ++.+++.+|.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCTGGGTCC-------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHH
Confidence 45788889999999999999999863 3456788899999999988 8999999999865 77889999997
Q ss_pred HHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 001357 386 YVQLG-----QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHF 459 (1093)
Q Consensus 386 ~~~~g-----~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~ 459 (1093)
+...+ ++++|+.+|++++... ++.+++.|+.+| ..+....+...+.......+.. .+..++++|.+|.
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYR 152 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHH
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHH
Confidence 77766 7889999999998854 455889999998 5544444433333333333221 3678889999999
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001357 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1093)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1093)
..+.++++........... ...++.+++++|.+|...|
T Consensus 153 ~~~~~~~~~~~a~~~~~~a------------------------------------------~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAA------------------------------------------LNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHH------------------------------------------TTTCTTHHHHHHHHHHHTT
T ss_pred cCCCcccCHHHHHHHHHHH------------------------------------------HcCCHHHHHHHHHHHHHcC
Confidence 9986665555433322210 0123348999999999999
Q ss_pred ---ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCChhHHHHhhhh-h--hcccch
Q 001357 540 ---DTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDL-E--LKNDDW 609 (1093)
Q Consensus 540 ---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~--~~~g~~ 609 (1093)
++.+|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+++++|.+ + ...+++
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~ 267 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDV 267 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCH
Confidence 999999999999999999888889999998765 79999999999987 8899999999998 4 568899
Q ss_pred HHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--
Q 001357 610 VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-- 687 (1093)
Q Consensus 610 ~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-- 687 (1093)
.+|+.+|+++.... +..+.+.||.+ |.... ... .++.+|+.+|+++. |.++.+.+.+|.+|..
T Consensus 268 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~-y~~G~-g~~-------~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 268 EQMMKYLDNGRAAD---QPRAELLLGKL-YYEGK-WVP-------ADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH-HHHCS-SSC-------CCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHH-HHcCC-CCC-------CCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence 99999999998764 67788889988 76320 000 38999999999998 8899999999999887
Q ss_pred --cCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001357 688 --KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1093)
Q Consensus 688 --~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~ 761 (1093)
..++.+|+.+|+++.+. .++.+.++||.+|.. ..++.+|+.+|+++... .++.....++.+..
T Consensus 333 g~~~d~~~A~~~~~~Aa~~-------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~----g~~~a~~~l~~l~~ 401 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARN-------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ----DTPEANDLATQLEA 401 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTT-------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhh-------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 34899999999999874 367899999999985 45899999999999864 34555556665543
Q ss_pred h--hccHHHHHHHHHHHHHhC
Q 001357 762 E--AEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 762 ~--~g~~~~A~~~~~~al~~~ 780 (1093)
. .++..+|...+++.....
T Consensus 402 ~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 402 PLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc
Confidence 3 345566666666655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=208.86 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=225.4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------hhH
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNA 595 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 595 (1093)
..+..++.+|.++...|++++|+.+|.+++..+ .++.++..+|.++...|++++|+.++.+++...|.+ +.+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 367889999999999999999999999999999 889999999999999999999999999999999877 689
Q ss_pred HHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCH
Q 001357 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL 675 (1093)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 675 (1093)
+..+|.++...|++++|+..|.+++...|. +.+ +... |++++|+..+.+++..+|.++
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~-~~~~------------~~~~~a~~~~~~~~~~~~~~~ 139 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADI-LTKL------------RNAEKELKKAEAEAYVNPEKA 139 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHH-HHHH------------HHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHH-HHHH------------hHHHHHHHHHHHHHHcCcchH
Confidence 999999999999999999999999998775 344 6666 999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 001357 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLY 755 (1093)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 755 (1093)
.++..+|.++...|++++|+..|++++...| .++.+++++|.+|...|++++|+..|++++.. .+.++.++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~ 212 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIR 212 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHH
Confidence 9999999999999999999999999999998 67899999999999999999999999999998 5677999999
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhC------CCCcchhhHHHHH
Q 001357 756 LARTHYEAEQWQDCKKSLLRAIHLA------PSNYTLRFDAGVA 793 (1093)
Q Consensus 756 la~~~~~~g~~~~A~~~~~~al~~~------P~~~~~~~~la~~ 793 (1093)
+|.++...|++++|..+|++++.+. |.+..++..++.+
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999999 8887777777654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=206.74 Aligned_cols=240 Identities=18% Similarity=0.188 Sum_probs=179.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1093)
.+..++.+|.+++..|++++|+.+|++++..+ .++.++..+|.++...|++++|+..|.+++...|... ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 35678899999999999999999999999998 8899999999999999999999999999999887653 5778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.+|.++..+|++++|+..|.+++.+.|. +.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~--------- 142 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRN---AEKELKKAEAEAYVNPEKAEEA--------- 142 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHH---HHHHHHHHHHHHHCCHHHHHHH---------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhH---HHHHHHHHHHHHHcCcchHHHH---------
Confidence 88999999999999999999999998886 345555666 8888888888888777665444
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1093)
+.+|.++...|++++|+.+|.+++. ..|....+++.+|.++...|++++
T Consensus 143 ----------------------------~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 143 ----------------------------RLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp ----------------------------HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ----------------------------HHHHHHHHHhcCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHhCCHHH
Confidence 4455555555555555555555554 234445566666666666666666
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 001357 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGE 418 (1093)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~------p~~~~~~~~la~ 418 (1093)
|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.+. |.+..++..++.
T Consensus 192 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 192 AIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 6666666666666666666666777766677777777776666666 665555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=201.60 Aligned_cols=199 Identities=18% Similarity=0.116 Sum_probs=141.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 67778888888888888888888888888888888888888888888888888888888888888888888 66788888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 205 LCRYKL-----------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 205 ~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
.++... |++++|+..|+++++++|+++.++..+|.++...|+ +++|+..|++++.++ .++.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE---RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcc-cchHHHHH
Confidence 888888 777777777777777777777777777777777777 777777777777777 67766666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1093)
+|.++...|++++|+..+++++... |..+.+++.+|.++...|++++|+..|.++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666543 444556666666666666666666665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=225.35 Aligned_cols=317 Identities=17% Similarity=0.113 Sum_probs=157.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..+|..++..|++++|+..|+++... .++.+++.+|.++...|++ .+|+.+|++++.. + +..++.+|.++.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~-~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S-PRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C-HHHHHHHHHHHH
Confidence 34566666666777777777666554 3555666666666666666 6666666666654 2 334566666555
Q ss_pred HcC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 209 KLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 209 ~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
..+ ++++|+.+|++++.. +++.+++.||.+|...+....-..++..+.++... .++.+++.|+.+|...+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTC
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCC
Confidence 554 566666666666653 33446666666666554411112333334333322 234455556666665554
Q ss_pred hHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc----C
Q 001357 284 HFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL----G 356 (1093)
Q Consensus 284 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g 356 (1093)
++.+...+........ ..++.+++.+|.+|...| ++++|+.+|.++.. ..+.....++.+|.+|... +
T Consensus 157 ~~~~~~~a~~~~~~a~--~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAAL--NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVS---RGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHT--TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCCCCCC
Confidence 4443333222221111 112236666666666666 66666666666665 3344444445666666444 4
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcC-----CHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHI-Y--VQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-----DTGAA 428 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~-----~~~~A 428 (1093)
++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++... +++.+++.||.+|..| ++.+|
T Consensus 232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A 306 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAA 306 (452)
T ss_dssp CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666666655 5566666666665 3 3455666666666665543 3556666666666433 56666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE----KGEFESAHQSFKDALG 476 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~ 476 (1093)
+.+|+++. +. .+..++++|.+|.. ..++++|+.+|+++..
T Consensus 307 ~~~~~~Aa---~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 307 EAHFEKAV---GR-----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHTTT---TT-----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHh---CC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 66665554 11 35556666655554 2356666666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=208.40 Aligned_cols=252 Identities=13% Similarity=0.080 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 001357 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-- 161 (1093)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-- 161 (1093)
.++..+|.+|+..|+.. +|+..|++++..+|.++.+++.+|.+++..|++++|+..|++++. .|.+
T Consensus 4 ~~~~~~a~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~ 71 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYA-----------EAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK 71 (272)
T ss_dssp -CHHHHHHHHHTTTCHH-----------HHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT
T ss_pred HHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh
Confidence 35677888888888877 999999999999999999999999999999999999999999998 4443
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH-
Q 001357 162 --VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA- 238 (1093)
Q Consensus 162 --~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la- 238 (1093)
..++..+|.++...|++++|+..|++++..+|.+ ..++..+|.++..+|++++|+..|++++..+|.++.++..+|
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 150 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR-LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ 150 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 4569999999999999999999999999999999 778999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhccCCCCC-----chHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ---HFLVEQLTETALAVTNHGPT-----KSHSYYN 310 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~-----~~~~~~~ 310 (1093)
.++. .++ +++|+..|.+++..+|.++.++..++.++...|+ +++|+..+++++......|. ...++..
T Consensus 151 ~~~~-~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (272)
T 3u4t_A 151 AYYY-NKE---YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEY 226 (272)
T ss_dssp HHHH-TTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred HHHH-HHH---HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 5555 446 9999999999999999999999999999999999 88999999999987644444 3478999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL 355 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 355 (1093)
+|.+|...|++++|+.+|++++. ..|.+..++-.++.+....
T Consensus 227 l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 227 IAYYYTINRDKVKADAAWKNILA---LDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHC------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCccHHHHHHHhhhhhccc
Confidence 99999999999999999999998 5577777777776655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=200.59 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..++..+|.++...|+.. +|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 5 ~~~~~~lg~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYD-----------AALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp CHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 457788999999988877 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 163 PALLGQACVEFNR-----------GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 163 ~a~~~la~~~~~~-----------g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
.+++.+|.++... |++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|+++++++ +++
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 9999999999999 99999999999999999999 7889999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 232 EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 232 ~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
.++..+|.++...|+ +++|+..|++++..+|+++.++..++.++...|++++|+..++++-
T Consensus 152 ~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 152 EIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999 9999999999999999999999999999999999999999988754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-20 Score=199.49 Aligned_cols=190 Identities=13% Similarity=0.044 Sum_probs=113.8
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC
Q 001357 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (1093)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 127 (1093)
+-.+..|+|..|+..+++.....|. ........++.+|+.+|+.. .|+..++. .+|.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~--------~~~e~~~~l~r~yi~~g~~~-----------~al~~~~~---~~~~~ 64 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPE--------RDVERDVFLYRAYLAQRKYG-----------VVLDEIKP---SSAPE 64 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHH--------HHHHHHHHHHHHHHHTTCHH-----------HHHHHSCT---TSCHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCch--------hhHHHHHHHHHHHHHCCCHH-----------HHHHHhcc---cCChh
Confidence 4456667777777777765544332 12344555666777776655 56655543 24445
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
..++..++..+...|++++|+..|++++.. +|+++.+++.+|.++...|++++|+..|++ |.+ ..++..+|.
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~-~~~~~~l~~ 138 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS-LECMAMTVQ 138 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC-HHHHHHHHH
Confidence 556666666777777777777777776664 477777777777777777777777777766 555 556666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--HhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL--QANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~--~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
++..+|++++|+..|++++..+|++....+..+.+.+ ..|+ +++|+..|++++..+|.++
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~---~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK---LQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH---HHHHHHHHHHHHHHSCCCH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH---HHHHHHHHHHHHHhCCCcH
Confidence 7777777777777777777776665433332222111 1222 4555555555554444433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-21 Score=219.34 Aligned_cols=316 Identities=17% Similarity=0.190 Sum_probs=228.8
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----Ch
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-----CP 196 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~ 196 (1093)
.....++.+|.+++..|++++|+.+|++++...|.++ .++..+|.+++..|++++|+.+|++++...+. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4456778888888888888888888888888888874 57788888888888888888888888776311 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhhhHHh----------HHHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQANEAAG----------IRKGMEKMQRA 260 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~~~~~~----------~~~Al~~~~~a 260 (1093)
..++..+|.++..+|++++|+..|.+++.+.|.. ..++..+|.++...|+... +.++...
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 5567778888888888888888888888775532 2345555555555443000 0000000
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT---NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
+++|+.++.+++... ...+....++..+|.++...|++++|+.+|.+++...+.
T Consensus 163 -----------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 163 -----------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 444444444444321 112334567888888888889999999888888875432
Q ss_pred CC---CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 338 PH---EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 338 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
.+ ....++..+|.++...|++++|+.+|++++...|.. ..++..+|.+|...|++++|+.+|.+++.+.+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 22 233478889999999999999999999998876544 678889999999999999999999999887543
Q ss_pred C------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 001357 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 409 ~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 468 (1093)
. ..++..++.++ ..|++++|+.++++++.+.+..+.. ....++..+|.++...|+...+.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 3 67888999999 9999999999999999987765432 12578888999999988774433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-20 Score=203.27 Aligned_cols=261 Identities=10% Similarity=0.026 Sum_probs=175.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
...++..|+|..|+..++++...+|++ ..+...++.+|+..|+++.|+..++.. +|.. ..++..++..+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-LQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-HHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-HHHHHHHHHHHcCCCcH
Confidence 455677788888888877766666665 356677777888888888887766541 3332 44566677777777778
Q ss_pred HHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 214 GKARQAFQRALQL--DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 214 ~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
+.|+..|++++.. +|+++.+++.+|.++...|+ +++|+..|.+ |.++.++..++.++...|++++|+..+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~---~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN---PDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC---HHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC---HHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877764 57777777778887777777 7777777776 677777777777777777777777777
Q ss_pred HHHHhccCCCCCchHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLA--RSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
++++... |.........+ ..+...|++++|+.+|++++. ..|..+.+++.+|.++...|++++|+..|++++
T Consensus 154 ~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 154 KKMQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD---KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7776653 22222222212 233344667777777777766 345566666777777777777777777777777
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHH
Q 001357 370 EIYPDNCETLKALGHIYVQLGQIEK-AQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~-A~~~l~~~l~~~p~~~~~~ 413 (1093)
..+|+++.++.++|.++...|++.+ +..++++++.++|+++.+.
T Consensus 228 ~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 228 DKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 7777777777777777777776654 4566667777777766554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=219.32 Aligned_cols=248 Identities=17% Similarity=0.175 Sum_probs=199.0
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Q 001357 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR 408 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~------~p~ 408 (1093)
.....+++.+|.++...|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|++++.+ .|.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455677788888888888888888888888877763 56778888888888888888888888765 244
Q ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC--------------------HHH
Q 001357 409 DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE--------------------FES 466 (1093)
Q Consensus 409 ~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~--------------------~~~ 466 (1093)
...++..+|.++ ..|++++|+.++.+++.+.+..+... ...++.++|.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 467788888888 88888888888888888877653221 15688999999999999 999
Q ss_pred HHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHH
Q 001357 467 AHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546 (1093)
Q Consensus 467 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 546 (1093)
|+.+|.+++...... ...+....++.++|.++...|++++|+.
T Consensus 166 A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL-------------------------------------GDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHT-------------------------------------TCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------------------------------cCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 999999888742110 0234567789999999999999999999
Q ss_pred HHHHHHHhcCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC------hhHHHHhhhhhhcccchHHHHH
Q 001357 547 LYRLILFKYQDY------VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 547 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
.|.+++...|.. ..++..+|.++...|++++|+.++++++.+.|.. ..++..+|.++...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 999999876543 3489999999999999999999999999987765 5688899999999999999999
Q ss_pred HHHHhhhcC
Q 001357 615 TFRAASDAT 623 (1093)
Q Consensus 615 ~~~~~l~~~ 623 (1093)
.|.+++...
T Consensus 289 ~~~~a~~~~ 297 (406)
T 3sf4_A 289 YHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=212.39 Aligned_cols=283 Identities=16% Similarity=0.061 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...+..+|..++..|++++|+.+|++++...+. .......+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 88 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE---------------------------------------DLRTLSAI 88 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc---------------------------------------ChhHHHHH
Confidence 466778999999999999999999999984210 00112368
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------cCCChhH
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV------NGKYPNA 595 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 595 (1093)
++.+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.++.+++.+ .|....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 899999999999999999999999987 5777889999999999999999999999999998 4556679
Q ss_pred HHHhhhhhhcccc-----------------hHHHHHHHHHhhhcCC-----CCChHHHHHhHhHHHHHHHhhcccCchHH
Q 001357 596 LSMLGDLELKNDD-----------------WVKAKETFRAASDATD-----GKDSYATLSLGNWNYFAALRNEKRAPKLE 653 (1093)
Q Consensus 596 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~l~~~~-----~~d~~~~~~l~~~~y~~~~~~~~~~~~~~ 653 (1093)
+..+|.++...|+ +++|+..|.+++...+ .....++..+|.+ |...
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~~~~----------- 236 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNT-YYLL----------- 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT-----------
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHc-----------
Confidence 9999999999999 9999999999887532 1233477788888 8888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHH
Q 001357 654 ATHLEKAKELYTRVIVQHTSNLY------AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFA 726 (1093)
Q Consensus 654 ~~~~~~A~~~~~~~l~~~p~~~~------a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~ 726 (1093)
|++++|+.+|++++...|.... ++..+|.++...|++++|+.+|++++...+.... .....++.++|.+|..
T Consensus 237 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 237 -GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315 (411)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998775333 8899999999999999999999999998863211 1236789999999999
Q ss_pred hcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 727 QGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 727 ~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
+|++++|+.+|++++...+...+ ..++..+|.+|...|++++|..+|++++.+.+.
T Consensus 316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999998755444 668889999999999999999999999999864
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=195.70 Aligned_cols=248 Identities=14% Similarity=0.108 Sum_probs=185.9
Q ss_pred hHHHHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 001357 106 KEEHFILATQYYNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS 181 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 181 (1093)
..++|++|+..|++++... |.++.+++.+|.++...|++++|+.+|++++..+|.++.++..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 3578889999999999873 456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
+.+|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++......++.+ ...|+ +.+|+..+.+++
T Consensus 97 ~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~---~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLD---EKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHC---HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccc-cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcC---HHHHHHHHHHHH
Confidence 99999999999998 77899999999999999999999999999999998776666544 45566 999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001357 262 EIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1093)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1093)
...|.+...+. ++.++...+++++|+..+..++...+. .+..+.+++.+|.+|...|++++|+.+|.+++. ..|.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~ 247 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA---NNVH 247 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCCT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCch
Confidence 98887765443 556666666666677666666543211 011234555555555555555555555555554 2222
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 341 FIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
.. ...+.++...|++++|+..|
T Consensus 248 ~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC---HHHHHHHHHHHHHHHC----
T ss_pred hH---HHHHHHHHHHHHHHhhHHHH
Confidence 21 12244445555555555444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=212.31 Aligned_cols=247 Identities=16% Similarity=0.213 Sum_probs=140.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCC
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQV------HPSC 195 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~------~p~~ 195 (1093)
.....++.+|..++..|++++|+.+|++++...|.++ .++..+|.+++..|++++|+.+|++++.. .|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445667788888888888888888888888888776 46778888888888888888888888776 2333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHhhhH--------------HhHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQL------DPENVEALVALAVMDLQANEA--------------AGIRKGME 255 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~la~~~~~~~~~--------------~~~~~Al~ 255 (1093)
..++..+|.++...|++++|+..|.+++.+ .|....++..+|.++...|+. ..+++|+.
T Consensus 126 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 -AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 556777788888888888888888877766 333444555555555554430 00333333
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 001357 256 KMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335 (1093)
Q Consensus 256 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 335 (1093)
.+.+++.+.+. ....+....++..+|.+|...|++++|+.+|.+++...
T Consensus 205 ~~~~al~~~~~-------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 205 FYQENLKLMRD-------------------------------LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHH-------------------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 33333322100 01112223455555555555555555555555555432
Q ss_pred CCC---CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 336 NKP---HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 336 ~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
+.. .....++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 1112244455555555555555555555555443321 33444455555555555555555554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=201.70 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...+...|..++..|++++|+.+|++++...+. ..+....+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~---------------------------------------~~~~~~~~ 45 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE---------------------------------------DLKTLSAI 45 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS---------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc---------------------------------------cHHHHHHH
Confidence 345677899999999999999999999984210 01112578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh------H
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------A 595 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~ 595 (1093)
+..+|.++...|++++|+.++.+++.. .|....++..+|.++...|++++|+.++.+++.+.+.... +
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 889999999999999999999999876 4455789999999999999999999999999998765433 8
Q ss_pred HHHhhhhhhcccc--------------------hHHHHHHHHHhhhcCCC-----CChHHHHHhHhHHHHHHHhhcccCc
Q 001357 596 LSMLGDLELKNDD--------------------WVKAKETFRAASDATDG-----KDSYATLSLGNWNYFAALRNEKRAP 650 (1093)
Q Consensus 596 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~~~~-----~d~~~~~~l~~~~y~~~~~~~~~~~ 650 (1093)
+..+|.++...|+ +++|+..+.+++..... ....++..+|.+ |...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~~~~-------- 196 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT-HYLL-------- 196 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH--------
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHh--------
Confidence 8999999999999 99999999998764211 123467788888 8888
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC-CCCchhHHHHHHHH
Q 001357 651 KLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FVQMPDVWINLAHV 723 (1093)
Q Consensus 651 ~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~lg~~ 723 (1093)
|++++|+.+|++++...|.. ..++..+|.++...|++++|+.+|++++...+... ......++.++|.+
T Consensus 197 ----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 197 ----GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp ----TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999999999876543 33889999999999999999999999999876321 11126788999999
Q ss_pred HHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 724 YFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 724 ~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
|...|++++|+.+|++++..++...+ ..++..+|.+|...|++++|..+|++++.+.+.
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765544 668889999999999999999999999998875
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=200.45 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CChHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----PALLGQACVEFNRGRYSDSLEFYKRALQVHP-----SCPGAI 199 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p-----~~~~~~ 199 (1093)
..++..|..++..|++++|+.+|++++...|.++ .++..+|.++...|++++|+.+|++++...+ .....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4566777777788888888888888877777773 5667777777777777777777777766521 112455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
+..+|.++...|++++|+..|.+++.+.|
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777766544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-19 Score=189.07 Aligned_cols=215 Identities=19% Similarity=0.215 Sum_probs=126.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
.+..++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++...|.. ..++..+|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHH
Confidence 345677778888888888888888888888888888888888888888888888888888888888777 6667778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
+...|++++|+..|++++..+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~------------- 164 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ---PKLALPYLQRAVELNENDTEARFQ------------- 164 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHCTTCHHHHHH-------------
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccHHHHHH-------------
Confidence 8888888888888888888777777777777777777776 777777777777666655533333
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
+|.++...|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|+
T Consensus 165 ------------------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 165 ------------------------FGMCLANEGMLDEALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp ------------------------HHHHHHHHTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred ------------------------HHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 33333333333333333433333 123333444455555555555555555555
Q ss_pred HHHHhCCCcHHHHHHHHHH
Q 001357 367 KVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~ 385 (1093)
+++..+|++..++..++.+
T Consensus 218 ~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 218 KAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHCTTCHHHHHHHTC-
T ss_pred HHHccCcchHHHHHHHHHH
Confidence 5555555555554444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.7e-19 Score=192.60 Aligned_cols=255 Identities=16% Similarity=0.171 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA-------KGEV-------EQASSAFKIVLE-ADRDNVPALLGQACVEFNR 175 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~ 175 (1093)
.+|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+.+|++++. .+|++..+|+.+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 589999999999999999999999999874 5885 999999999999 6999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hhhHHhHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGIRKGM 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~~~Al 254 (1093)
|++++|..+|++++...|.+...+|..+|.++.+.|++++|+..|.++++..|.+..++...+.+... .|+ +++|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~---~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---KSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---HHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---HHHHH
Confidence 99999999999999999988434899999999999999999999999999999998888877766543 577 99999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP-TKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
..|++++..+|.++.++..++.++...|++++|..+|++++.....+| .....|..++..+...|+++.|..++.++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887533334 3567788888888888888888888888888
Q ss_pred hcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383 (1093)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1093)
..|..+.... ++.+ ..-.+++.++|.++..+..+|
T Consensus 270 ~~p~~~~~~~----~~~~-----------~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 270 AFREEYEGKE----TALL-----------VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HTTTTTSSCH----HHHH-----------HTTTCBTTBCSSCHHHHHTTT
T ss_pred Hcccccccch----HHHH-----------HHHHHhcccCCCCHHHHHhcC
Confidence 6554333321 1111 011145567788888777665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-16 Score=184.83 Aligned_cols=449 Identities=9% Similarity=-0.045 Sum_probs=328.8
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR---YSDSLEFYKRA 188 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~a 188 (1093)
+-+..|+..+..+|.+...|..++..+...+.+..+..+|++++...|.+...|...+......|+ +..+..+|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhCC--CChHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhh------hHH
Q 001357 189 LQVHP--SCPGAIRLGIGLCRYKLGQL--------GKARQAFQRALQL----DPENVEALVALAVMDLQAN------EAA 248 (1093)
Q Consensus 189 l~~~p--~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~a~~~la~~~~~~~------~~~ 248 (1093)
+...| .+ ..+|..........++. +....+|++++.. +|.+...|........... ..+
T Consensus 130 l~~~~~~~s-v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 130 LSKELGNND-LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp TCSSSCCCC-HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHhcCCCCC-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 99984 34 45666666555555543 3345888988863 6777778877766544211 112
Q ss_pred hHHHHHHHHHHHHHhCCCc-H-HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 001357 249 GIRKGMEKMQRAFEIYPYC-A-MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGL 326 (1093)
Q Consensus 249 ~~~~Al~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 326 (1093)
.++.+..+|.+++.+ |.. . .++......-...+.. .+...+ . .....|..|..
T Consensus 209 ~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~-~a~~~~--------------------~---e~~~~y~~Ar~ 263 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQL-TARRHI--------------------G---ELSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTT-THHHHH--------------------H---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcc-hHHHHH--------------------H---HhhHHHHHHHH
Confidence 378888999999965 432 2 2222111111000000 011110 0 01123444444
Q ss_pred HHHHHHH---hc----CCC---------C-------CchhhHHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCC
Q 001357 327 YYMASVK---EI----NKP---------H-------EFIFPYYGLGQVQLKLGD---------FRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 327 ~~~~al~---~~----~~~---------~-------~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~p~ 374 (1093)
.|...-. .+ +.. | .....|..... +...+ ......+|++++...|.
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~--fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~ 341 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR--WESDNKLELSDDLHKARMTYVYMQAAQHVCF 341 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH--HHHhCCccccchhhHHHHHHHHHHHHHHcCC
Confidence 4433221 11 000 1 00122333322 22222 23456889999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC------CC-
Q 001357 375 NCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG------EE- 445 (1093)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~-~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~------~~- 445 (1093)
++.+|+..+..+...|+.++|. .+|++++...|.+..+|+.++.+. ..|+++.|..+|++++...+... .+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 9999999999999999999997 999999999999999999999999 89999999999999998653110 01
Q ss_pred ----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC
Q 001357 446 ----------VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG 515 (1093)
Q Consensus 446 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 515 (1093)
....+|...+.+..+.|+.+.|..+|.+|+...
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~------------------------------------- 464 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK------------------------------------- 464 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------------------------------------
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------------------------------------
Confidence 023567777888888999999999999998731
Q ss_pred CCcCCCCchHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC---C
Q 001357 516 NHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNG---K 591 (1093)
Q Consensus 516 ~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~ 591 (1093)
.+....++...|.+....+ +++.|..+|+.+++..|+.+..+...+......|+.+.|..+|++++...| .
T Consensus 465 -----~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 465 -----KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp -----GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred -----CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 1123455666676666655 489999999999999999999998999999999999999999999999988 3
Q ss_pred ChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHH
Q 001357 592 YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYA 630 (1093)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~ 630 (1093)
...+|..+..+....|+.+.+..+++++....|+.+...
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH
Confidence 566888999999999999999999999999998855443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-18 Score=181.77 Aligned_cols=231 Identities=18% Similarity=0.218 Sum_probs=157.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
+|.++.+++.+|.+++..|++++|+.+|++++. |.++.+++.+|.++.. .+++++|+.+|++++..+ + +.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C-HHH
Confidence 467778888888888888888888888888877 6777888888888888 888888888888888775 3 566
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----hhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 200 RLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 200 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
++.+|.+|.. .+++++|+..|++++.. +++.++..+|.++.. .++ +++|+..|++++... ++.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a~~~~--~~~-- 147 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD---FKKAVEYFTKACDLN--DGD-- 147 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHHHHTT--CHH--
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHhcC--cHH--
Confidence 7788888888 88888888888888776 367777777777777 666 777777777776654 333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1093)
+++.+|.+|.. .+++++|+.+|+++++. ....+++.
T Consensus 148 -----------------------------------a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~ 187 (273)
T 1ouv_A 148 -----------------------------------GCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFN 187 (273)
T ss_dssp -----------------------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHH
Confidence 44455555555 55566666666655541 23455566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q 001357 348 LGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKIDPRDA 410 (1093)
Q Consensus 348 la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~p~~~ 410 (1093)
+|.+|.. .+++++|+.+|++++...| +.++..+|.+|.. .+++++|+.+|++++...|.+.
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 6666666 6666666666666665543 5566666666666 6666666666666666655443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-18 Score=181.64 Aligned_cols=228 Identities=17% Similarity=0.276 Sum_probs=175.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
+|.++.+++.+|.++...|++++|+.+|++++. |.+ +.+++.+|.++.. .+++++|+..|+++++.+ ++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKE-NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCC-HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 356666777777777777777777777777766 444 4556667777776 666666666666666553 5556
Q ss_pred HHHHHHHHHH----hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHH
Q 001357 234 LVALAVMDLQ----ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309 (1093)
Q Consensus 234 ~~~la~~~~~----~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 309 (1093)
+..+|.++.. .++ +.+|+..|++++.. ..+.+++
T Consensus 77 ~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~---------------------------------------~~~~a~~ 114 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQN---TNKALQYYSKACDL---------------------------------------KYAEGCA 114 (273)
T ss_dssp HHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHT---------------------------------------TCHHHHH
T ss_pred HHHHHHHHhCCCCcccC---HHHHHHHHHHHHHc---------------------------------------CCccHHH
Confidence 6666666555 554 55555555555443 1346778
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 310 NLARSYHS----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLKA 381 (1093)
Q Consensus 310 ~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1093)
.+|.+|.. .+++++|+.+|.+++.. ....+++.+|.++.. .+++++|+.+|++++.. .++.++..
T Consensus 115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~ 187 (273)
T 1ouv_A 115 SLGGIYHDGKVVTRDFKKAVEYFTKACDL-----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFN 187 (273)
T ss_dssp HHHHHHHHCSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 88888888 89999999999999872 256789999999999 99999999999999987 46899999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h----cCCHHHHHHHHHHHHHHHHh
Q 001357 382 LGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 382 la~~~~~----~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~----~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+|.+|.. .+++++|+.+|++++...| +.++..++.++ . .+++++|+.+|++++...+.
T Consensus 188 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 188 AGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 9999999 9999999999999999866 88999999999 7 89999999999999987543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=176.26 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
...+++.||.+|...|+.+ +|+..|+++++++|+++.+++.+|.++...|++++|+..+.+++...|++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFD-----------GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 3557777888888777766 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+.++..+|.++...++++.|+..+.+++...|.+ ..++..+|.++..+|++++|+..|+++++++|.++.++..+|.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 8888888888888888888888888888888888 677888888888888888888888888888888888888888888
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
...|+ +++|+..|+++++++|+++
T Consensus 152 ~~~g~---~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 152 EGKGL---RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHTTC---HHHHHHHHHHHHHTTHHHH
T ss_pred HHCCC---HHHHHHHHHHHHhCCccCH
Confidence 88888 8888888888888888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=197.56 Aligned_cols=253 Identities=14% Similarity=0.126 Sum_probs=174.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEAD----RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
+..+...|++++|+..|++++... |.++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++...
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQA 90 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHT
T ss_pred eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHc
Confidence 334455688999999999999873 4567889999999999999999999999999999998 77899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1093)
|++++|+..|.+++.++|.++.++..+|.++...|+ +++|+..|.+++..+|.++.....++.. ...|++++|+..
T Consensus 91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR---DKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999888655444433 445666666666
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
+..++...+.. ... +.++..+...+++++|+..+.+++...+. .+....+++.+|.++...|++++|+.+|++++
T Consensus 167 ~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 167 LKQHFEKSDKE---QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHSCCC---STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcc---hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66665543222 112 23555555555666666666555431110 01113445555555555555555555555555
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 370 EIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
..+|.+...+ +.++...|++++|+..|
T Consensus 243 ~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred hCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 5555442222 44444555555555444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-18 Score=203.62 Aligned_cols=238 Identities=12% Similarity=0.015 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHhchhhhh---hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Q 001357 83 IAILNALGVYYTYLGKIETK---QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-EQASSAFKIVLEAD 158 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~---~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~ 158 (1093)
+..+..+...|+........ ...-.+.+.+|+..+..+....|.++.+++.+|.++...|++ ++|+.+|++++..+
T Consensus 54 ~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~ 133 (474)
T 4abn_A 54 VDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE 133 (474)
T ss_dssp HHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC
Confidence 33444555555554433321 123456688999999999999999999999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL---------GQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 229 (1093)
|+++.+|+.+|.++...|++++|+.+|++++..+|+ ..++..+|.++..+ |++++|+..|++++.++|+
T Consensus 134 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 134 PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998 47899999999999 9999999999999999999
Q ss_pred cHHHHHHHHHHHHHh--------hhHHhHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 001357 230 NVEALVALAVMDLQA--------NEAAGIRKGMEKMQRAFEIYP---YCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1093)
Q Consensus 230 ~~~a~~~la~~~~~~--------~~~~~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (1093)
+..+|..+|.++... |+ +++|+..|++++.++| .++.+++.+|.+|...|++++|+..+.+++...
T Consensus 212 ~~~~~~~lg~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 212 DGRSWYILGNAYLSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHH---HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhhccccch---HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999988 77 9999999999999999 788777777777777777777777776666543
Q ss_pred CCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 001357 299 NHGPTKSHSYYNLARSYHSKGDYEKAGLYY 328 (1093)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1093)
|....++..++.++...|++++|+..+
T Consensus 289 ---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 289 ---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566666666666666666666544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=184.82 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+..+|.+|...|+.. +|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~-----------~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 91 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYE-----------KAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA 91 (243)
T ss_dssp ------------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch
Confidence 445666777777666655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.++..+|.++...|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+..|.+++...|.+..++..+|.++.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 7789999999999999999999999999999999999999999999
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYH 316 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 316 (1093)
..|+ +++|+..|.+++..+|.++.++..++.++...|++++|...+++++... |....++..++.+..
T Consensus 171 ~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 171 NEGM---LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ---PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHTC---CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC---TTCHHHHHHHTC---
T ss_pred HcCC---HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC---cchHHHHHHHHHHHh
Confidence 9999 9999999999999999999888888888888888888888888888654 445566665554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-18 Score=182.46 Aligned_cols=213 Identities=19% Similarity=0.148 Sum_probs=154.4
Q ss_pred cCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 123 IDMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 123 ~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
.+|.+ +.+++.+|.+++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~ 109 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN-ARVLN 109 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHH
Confidence 45555 67888899999999999999999999999999999999999999999999999999999999998888 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
.+|.++...|++++|+..|.+++. ..|.+..++..+|.++...|+ +++|+..|.+++...|.++.++..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~------ 180 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK---PAQAKEYFEKSLRLNRNQPSVALE------ 180 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHH------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCcccHHHHHH------
Confidence 889999999999999999998888 777777778888888877777 777777777777777666544433
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHH
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1093)
+|.++...|++++|+.+|.+++. ..|....++..++.++...|+++
T Consensus 181 -------------------------------la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 181 -------------------------------MADLLYKEREYVPARQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp -------------------------------HHHHHHHTTCHHHHHHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHH
T ss_pred -------------------------------HHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHH
Confidence 44444444444444444444443 23334444555555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHH
Q 001357 360 SALTNFEKVLEIYPDNCETL 379 (1093)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~ 379 (1093)
+|+.++++++...|+++.+.
T Consensus 227 ~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 227 TAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 55555555555555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-18 Score=176.03 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=96.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
+|.++.+++.+|.+++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ ..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHH
Confidence 456667777777777777777777777777777777777777777777777777777777777777777776 5566777
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 204 GLCRYKL-GQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 204 a~~~~~~-g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
|.++... |++++|+..|++++. ..|.+..++..+|.++...|+ +++|+..|.+++...|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ---FGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 7777777 777777777777776 444455555556665555555 5555555555555555444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-18 Score=175.20 Aligned_cols=218 Identities=17% Similarity=0.091 Sum_probs=146.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
.|.++.+++.+|.+++..|++++|+.+|++++...|.+ ..++..+|.++...|++++|+..|.+++..+|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34445555555555555555555555555555555555 44455555555555555555555555555555555555555
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHh
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHS 317 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 317 (1093)
|.++...+ |++++|+.++.+++. .+..|....+++.+|.++..
T Consensus 83 ~~~~~~~~------------------------------------~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 83 GWFLCGRL------------------------------------NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHTTT------------------------------------CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc------------------------------------CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHH
Confidence 54444440 444444444444444 22334556777888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Q 001357 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-DNCETLKALGHIYVQLGQIEKAQ 396 (1093)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~ 396 (1093)
.|++++|+.+|.+++. ..|....++..+|.++...|++++|+.+|++++...| .+..++..++.++...|+.+.|.
T Consensus 126 ~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLA---AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp TTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 8888888888888887 3456677888888888889999999999998888888 88888888888888888999888
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 001357 397 ELLRKAAKIDPRDAQAFIDL 416 (1093)
Q Consensus 397 ~~l~~~l~~~p~~~~~~~~l 416 (1093)
.+++.+....|+++.+...+
T Consensus 203 ~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 203 EYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHh
Confidence 88888888888888776544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-18 Score=181.09 Aligned_cols=212 Identities=16% Similarity=0.103 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +.+|+..|.+++..+|.++.++..++.+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME---PKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555 5555555555555555555555555555
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCC
Q 001357 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGD 357 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 357 (1093)
+...|++++|+.++.+++. .+..|....+++.+|.++...|++++|+.+|.+++. ..|....+++.+|.++...|+
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR---LNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHcCC
Confidence 5555555556655555554 223455667888888889999999999999999887 446677889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001357 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1093)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~l 416 (1093)
+++|+.+|++++...|.+..++..++.++...|++++|..++++++...|+++.+...+
T Consensus 191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-18 Score=187.48 Aligned_cols=254 Identities=11% Similarity=0.077 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCChHHHHHHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFN-------RGRY-------SDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~-------~g~~-------~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~ 209 (1093)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+.+|++++. .+|++ ..+|+.+|.++..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~-~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-MLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHh
Confidence 789999999999999999999999998874 5886 899999999999 69988 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHH-HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCChHHH
Q 001357 210 LGQLGKARQAFQRALQLDPENVE-ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF-TGQHFLV 287 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A 287 (1093)
.|++++|+..|++++.+.|.++. +|..++.++...|+ +++|+..|.+++...|....++...+.+.+. .|+++.|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG---IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999886 89999999999888 9999999999999999887777666655443 6888888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-CchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH-EFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 288 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
..+|++++... |..+.+|..++..+...|++++|+.+|++++.....+| .....|..++..+...|+++.|..++.
T Consensus 189 ~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888765 55678888888888888888888888888887322233 356677888888888888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la 417 (1093)
++++..|++...... +.+. ...+++.+.|.++..+..||
T Consensus 266 ~a~~~~p~~~~~~~~-~~~~-----------~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 266 RRFTAFREEYEGKET-ALLV-----------DRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHHHTTTTTSSCHH-HHHH-----------TTTCBTTBCSSCHHHHHTTT
T ss_pred HHHHHcccccccchH-HHHH-----------HHHHhcccCCCCHHHHHhcC
Confidence 888888875433211 1111 11144566788887776655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-18 Score=170.07 Aligned_cols=168 Identities=21% Similarity=0.248 Sum_probs=155.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
.++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.. ..++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS-AEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh-HHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999 778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
++...++++.|...+.+++.++|.+..++..+|.++...|+ +++|+..|+++++++|.++.++..+|.+|...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE---HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC---chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999 999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHhc
Q 001357 286 LVEQLTETALAV 297 (1093)
Q Consensus 286 ~A~~~~~~al~~ 297 (1093)
+|+..++++++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 888888877754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-17 Score=188.52 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=96.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCC---CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chhhH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHG---PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIFPY 345 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~ 345 (1093)
.+|.+++..|++++|+..+.+++...... +..+.+++.+|.+|...|+++.|+.+|.+++...+..+. ...++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 35556666666666666666665442221 223455666666666666666666666666554332221 23345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHH
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CETLKALGHIYVQLGQIEKAQELLRKAAK-----ID-PRDAQAF 413 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~-p~~~~~~ 413 (1093)
..+|.++...|++++|+.+|.+++...+.. ..++..+|.+|...|++++|+.+|++++. .+ |..+.++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 555555555556666655555555543211 13455555555555555555555555555 23 4444455
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 414 IDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
..+|.++ ..|++++|+.++++++.+.+..+.+.....+..+|.++...|+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 5555555 5555555555555555544433222112223344444444444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-18 Score=199.27 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=172.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 142 GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 142 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
+.+++|+..+..+....|.++.+++.+|.++...|+| ++|+.+|++++..+|.+ ..+++.+|.+|+..|++++|+.+|
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578888899988888999999999999999999999 99999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHh---------hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 221 QRALQLDPENVEALVALAVMDLQA---------NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~---------~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
++++.++|+ ..++..+|.++... |+ +++|+..|++++.++|.++.+++.+|.+|...
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------- 226 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRH---VMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL---------- 226 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHH---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhh---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------
Confidence 999999998 79999999999998 77 99999999999999998886666655555433
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC---CchhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH---EFIFPYYGLGQVQLKLGDFRSALTNFEKV 368 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 368 (1093)
++..+. ..|++++|+.+|.+++.. .| ....+++.+|.+|...|++++|+..|+++
T Consensus 227 ----------------~~~~~~---~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 227 ----------------YFNTGQ---NPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp ----------------HHHTTC---CHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHhhcc---ccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000000 014566666666666652 34 55666666666666666666666666666
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRK 401 (1093)
Q Consensus 369 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 401 (1093)
+..+|++..++..++.++...|++++|+..+.+
T Consensus 285 l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666666666666666666666666666655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-15 Score=175.80 Aligned_cols=230 Identities=7% Similarity=-0.052 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSI-ELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
.....+|++++..+|.++..|+..+..+...|+..+|. .+|++++...|.+..+|..++.+....|+++.|..+|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred hcC-----------CCC----------ChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhh-CCCCHHHH
Q 001357 621 DAT-----------DGK----------DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-HTSNLYAA 678 (1093)
Q Consensus 621 ~~~-----------~~~----------d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~a~ 678 (1093)
... |.. ....++..+.+ .... +..+.|..+|.++++. .+.....+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~-erR~------------~~l~~AR~vf~~A~~~~~~~~~~ly 472 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MKRI------------QGLAASRKIFGKCRRLKKLVTPDIY 472 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHHTGGGSCTHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhcCCCChHHH
Confidence 752 211 11223332322 2222 7789999999999987 33344555
Q ss_pred HHHHHHHHhcC-CchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001357 679 NGAGVVLAEKG-QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1093)
Q Consensus 679 ~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 756 (1093)
...+.+....+ +++.|..+|+.+++..| .++..|..++......|+.+.|..+|++++...+.+.. ..+|...
T Consensus 473 i~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 473 LENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 56666666655 59999999999999998 77889989999999999999999999999998653323 6777788
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCcchhhH
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 789 (1093)
...-...|+.+.+.++++++....|+++.+...
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 888888999999999999999999998654433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=190.29 Aligned_cols=247 Identities=14% Similarity=0.102 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------c
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINK---PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-------N 375 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------~ 375 (1093)
..++.+|..+...|++++|+.+|.+++..... .+....+++.+|.++...|+++.|+.++.+++...+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 35666999999999999999999999975432 2335678999999999999999999999999987433 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC-CCC
Q 001357 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE-EVP 447 (1093)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~-~~~ 447 (1093)
..++..+|.+|...|++++|+.+|.+++.+.+.. ..++.++|.++ ..|++++|+.++++++.+.+.... +..
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 4689999999999999999999999999875432 35899999999 999999999999999998877655 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
+.++.++|.++...|++++|+.+|++++...... .++.....
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------------~~~~~~~~ 305 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA--------------------------------------GDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--------------------------------------CCHHHHHH
Confidence 7899999999999999999999999999853211 12333344
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 001357 528 LFNLARLLEQIHD---TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK 591 (1093)
Q Consensus 528 ~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 591 (1093)
+..++.++...|+ +.+|+.++++. ...|....++..+|.++...|++++|..++++++.+...
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 6778999999999 77777777765 333455678889999999999999999999999887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-16 Score=167.08 Aligned_cols=216 Identities=15% Similarity=0.179 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHP-SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
++.+++.+|.+++..|+|++|+..|++++..+| .+ ..+++.+|.++..+|++++|+..|++++..+|++..++..+|.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC-cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 445555555555555555555555555555554 33 3444445555555555555555555555555555555555555
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC
Q 001357 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1093)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1093)
++...|+ +.+|+..|++++..+|.++..+..++ .+++.+|.++...|
T Consensus 85 ~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~------------------------------~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 85 AYRDMKN---NQEYIATLTEGIKAVPGNATIEKLYA------------------------------IYYLKEGQKFQQAG 131 (228)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHSTTCHHHHHHHH------------------------------HHHHHHHHHHHHTT
T ss_pred HHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHHH------------------------------HHHHHHhHHHHHhc
Confidence 5555555 55555555555555555553322211 23444455555555
Q ss_pred CHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1093)
++++|+..|.+++. ..|. ...+++.+|.++...| ...++++..+.+.....+ .+......+.+++|+.
T Consensus 132 ~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 132 NIEKAEENYKHATD---VTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVD 201 (228)
T ss_dssp CHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---cCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHH
Confidence 55555555555554 3445 4555555665554433 223344444443333222 2223334455666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH
Q 001357 398 LLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 398 ~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
+|+++++++|++..+...++.+.
T Consensus 202 ~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 202 YLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHHHH
Confidence 66666666666666666555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-17 Score=171.80 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM-HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..+..+|.+|+..|+.. +|+..|++++..+| .+..+++.+|.++...|++++|+..|++++..+|+++
T Consensus 8 ~~~~~~g~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYA-----------VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHccCHH-----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 57788899999888877 99999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-------AIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--NVEA 233 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a 233 (1093)
.+++.+|.++...|++++|+..|++++..+|++ . .+++.+|.++..+|++++|+..|+++++++|+ ++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN-ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999999999999999998 4 56899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 001357 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLAR 313 (1093)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 313 (1093)
+..+|.++...|. ..+.++..+.+.....+ .+......+.+++|+.++++++... |.+..+...++.
T Consensus 156 ~~~l~~~~~~~~~--------~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~---p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGA--------DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS---PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC---CCCHHHHHHHHH
Confidence 9999999988765 23444455544443322 2333445566677777777777654 444555555555
Q ss_pred HH
Q 001357 314 SY 315 (1093)
Q Consensus 314 ~~ 315 (1093)
+.
T Consensus 223 i~ 224 (228)
T 4i17_A 223 VK 224 (228)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=175.83 Aligned_cols=219 Identities=20% Similarity=0.224 Sum_probs=156.6
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-- 195 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-- 195 (1093)
...+|.++..++.+|..++..|++++|+..|++++..+|.+ +.+++.+|.+++..|+|++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578888889999999999999999999999999988888 8888999999999999999999999999988865
Q ss_pred hHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 196 PGAIRLGIGLCRYK--------LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 196 ~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
...+++.+|.++.. +|++++|+..|++++..+|++..+...+..+....+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~--------------------- 146 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK--------------------- 146 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH---------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH---------------------
Confidence 25567888888888 8888888888888888888776554433322211111
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHH
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1093)
....++.+|.+|...|++++|+..|.+++...+..+....+++.
T Consensus 147 ------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 147 ------------------------------------LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred ------------------------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 01235566666667777777777777776655444445566777
Q ss_pred HHHHHHHc----------CCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHH
Q 001357 348 LGQVQLKL----------GDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQ 396 (1093)
Q Consensus 348 la~~~~~~----------g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~ 396 (1093)
+|.+|... |++++|+..|++++..+|+++ .+...++.++...++++.+.
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 77777655 777777777777777777763 45566666666666655443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-17 Score=198.70 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=162.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
..|+++.++..+|.++..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~-~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
+|.++..+|++++|+..|+++++++|++..++..+|.++...|+ +++|+..|+++++++|+++.++..++.++...|
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~---~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN---IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcc
Confidence 99999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q 001357 283 QHFLVEQLTETALAV 297 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~ 297 (1093)
++++|...+++++..
T Consensus 160 ~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 160 DWTDYDERMKKLVSI 174 (723)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999988888887753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=199.32 Aligned_cols=174 Identities=19% Similarity=0.191 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 79 RYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1093)
Q Consensus 79 ~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 158 (1093)
.|+...+++.||.+|..+|+.+ +|+..|+++++++|+++.+++.+|.+|...|++++|+..|+++++++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~-----------eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIE-----------EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4467889999999999999888 99999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|+++.+++.+|.++..+|++++|+..|+++++++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..+|
T Consensus 74 P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~ 152 (723)
T 4gyw_A 74 PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhh
Confidence 9999999999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
.++...|+ +.+|+..+++++++.|+.
T Consensus 153 ~~l~~~g~---~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 153 HCLQIVCD---WTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHTTC---CTTHHHHHHHHHHHHHHH
T ss_pred hHHHhccc---HHHHHHHHHHHHHhChhH
Confidence 99999999 999999999998876543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=184.04 Aligned_cols=402 Identities=13% Similarity=0.099 Sum_probs=192.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1093)
..|++++|..+++++ +++.+|..+|.++...|++++|+..|.++ .+ ...+..++.++...|++++|+.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D-~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD-PSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CC-HHHHHHHHHHHHhCCCHHHHHHH
Confidence 345555555555554 22335555555555555555555555442 11 22345555555555555555555
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 001357 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1093)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1093)
++.+.+..+ ++.+...++.+|.+.|+ +.++..++. .| +..++..+|..++..|.|++|..+|..+
T Consensus 84 l~~ark~~~-~~~i~~~Li~~Y~Klg~---l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKKAR-ESYVETELIFALAKTNR---LAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp --------------------------C---HHHHTTTTT-----CC-----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHhCc-cchhHHHHHHHHHHhCC---HHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 555554322 24444555555555555 444444442 12 2346777777777777777777777754
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001357 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1093)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1093)
..|..+|.++..+|+|++|+..|.++. .+.+|..++.++...|+++.|..+...+. .+| .-.
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a---d~l 210 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA---DEL 210 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH---HHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH---hhH
Confidence 367888999999999999999998872 35678888899999999999987776533 444 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001357 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI---SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGV 456 (1093)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~ 456 (1093)
..++.+|.+.|++++|+.++++++.+++.+..++..++.+|. .++..+.++.|...+.+.+-........+|..+..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999999999999999999883 34444555555444443331000012567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHH
Q 001357 457 IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536 (1093)
Q Consensus 457 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~ 536 (1093)
+|...++++.|+..........- +...|.+-+ ..+.++.+++.....|.
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~-----------------------~~~~f~~~~--------~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAW-----------------------KEGQFKDII--------TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTC-----------------------CHHHHHHHH--------HHCSSTHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhh-----------------------hhHHHHHHH--------hchhHHHHHHHHHHHHH
Confidence 99999999999887655432110 000011111 23457788888777777
Q ss_pred hcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHH
Q 001357 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616 (1093)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 616 (1093)
+....++..+..++...-+. .+...++.+.|+..-...++..+.. -++..+--.+-.+|....+++. +
T Consensus 340 --~~~p~~l~~ll~~l~~~ld~----~r~v~~~~~~~~l~l~~~yl~~v~~--~n~~~vnealn~l~ieeed~~~----l 407 (449)
T 1b89_A 340 --EFKPLLLNDLLMVLSPRLDH----TRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA----L 407 (449)
T ss_dssp --HHCGGGHHHHHHHHGGGCCH----HHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH----H
T ss_pred --hcCHHHHHHHHHHHHhccCc----HHHHHHHHHcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHhhhhHHH----H
Confidence 44555666666666322221 2344556777888878778766543 3456666777888888888854 4
Q ss_pred HHhhhcCCCCCh
Q 001357 617 RAASDATDGKDS 628 (1093)
Q Consensus 617 ~~~l~~~~~~d~ 628 (1093)
+..+.....-|.
T Consensus 408 r~si~~~~nfd~ 419 (449)
T 1b89_A 408 RTSIDAYDNFDN 419 (449)
T ss_dssp HHHHHHCCCSCH
T ss_pred HHHHHHhcCcCH
Confidence 445554444343
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=170.07 Aligned_cols=213 Identities=15% Similarity=0.206 Sum_probs=172.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--
Q 001357 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN-- 230 (1093)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 230 (1093)
....|.++..++.+|..++..|+|++|+..|++++..+|.++ ..+++.+|.+++.+|++++|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345788999999999999999999999999999999999873 5678999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHHH--------hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC
Q 001357 231 -VEALVALAVMDLQ--------ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (1093)
Q Consensus 231 -~~a~~~la~~~~~--------~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 301 (1093)
..+++.+|.++.. .|+ +.+|+..|.+++..+|+++.+...+.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~a~~-------------------------- 138 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD---TRKAIEAFQLFIDRYPNHELVDDATQ-------------------------- 138 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH---HHHHHHHHHHHHHHCTTCTTHHHHHH--------------------------
T ss_pred hHHHHHHHHHHHHHhcccccccchh---HHHHHHHHHHHHHHCcCchhHHHHHH--------------------------
Confidence 6788999999998 777 99999999999999987763321111
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCET 378 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~ 378 (1093)
.+ .... ......++.+|.+|...|++++|+..|++++..+|+ .+.+
T Consensus 139 -----------~~--------------~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a 187 (261)
T 3qky_A 139 -----------KI--------------RELR------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDA 187 (261)
T ss_dssp -----------HH--------------HHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred -----------HH--------------HHHH------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHH
Confidence 00 0000 011234788999999999999999999999999998 5679
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-hcCCHHH
Q 001357 379 LKALGHIYVQL----------GQIEKAQELLRKAAKIDPRDA---QAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 379 ~~~la~~~~~~----------g~~~~A~~~l~~~l~~~p~~~---~~~~~la~~~-~~~~~~~ 427 (1093)
++.+|.+|... |++++|+..|++++...|+++ .+...++.++ ..++++.
T Consensus 188 ~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 188 LVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999977 899999999999999999985 4555666666 5555544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=179.57 Aligned_cols=240 Identities=15% Similarity=0.091 Sum_probs=197.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIY---P---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR-------DA 410 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~-------~~ 410 (1093)
.++.+|..+...|++++|+.+|.+++... + ....++..+|.+|...|+++.|+.++.+++.+.+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 46778999999999999999999998763 2 24578999999999999999999999999986432 25
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccccc
Q 001357 411 QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488 (1093)
Q Consensus 411 ~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 488 (1093)
.++..+|.++ ..|++++|+.+|.+++.+.+..+... ...+++++|.+|...|++++|+.+|++++......
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------- 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------- 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------
Confidence 6788999999 99999999999999999887653322 25788999999999999999999999999842110
Q ss_pred chhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----cCChHHHHH
Q 001357 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYL 563 (1093)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 563 (1093)
..|....+++++|.++...|++++|+.++++++.. +|.....+.
T Consensus 256 -------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 256 -------------------------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp -------------------------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred -------------------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23456789999999999999999999999999997 445566777
Q ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 564 RLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 564 ~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
.++.++...++ +.+|+.++++. ...|....++..+|.+|...|++++|...|++++..
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88888888888 77788777762 223344557889999999999999999999998764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-15 Score=160.99 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=183.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CChHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG--EVEQASSAFKIVLEADRDNVPALLGQACVE----FNR---GRYSDSL 182 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~----~~~---g~~~~Al 182 (1093)
+|+.++++++.++|.+..+|+.++.++...| .+++++.++..++..+|.+..+|..++.++ ... +++.+++
T Consensus 51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL 130 (306)
T 3dra_A 51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREF 130 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHH
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 8999999999999999999999999999999 999999999999999999999999999999 777 8999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh---HHhHHHHHHHH
Q 001357 183 EFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG--KARQAFQRALQLDPENVEALVALAVMDLQANE---AAGIRKGMEKM 257 (1093)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~---~~~~~~Al~~~ 257 (1093)
.++.+++..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+.+++.++
T Consensus 131 ~~~~~~l~~~pkn-y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 131 DILEAMLSSDPKN-HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 9999999999999 788999999999999998 99999999999999999999999999887754 23488999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCChHH-HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 258 QRAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
.+++..+|.+..+|+.++.++...|.... +..++.+++......+..+.++..++.+|...|+.++|+.+|..+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999999999999999888888887544 4445555443321223444555555555555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=182.53 Aligned_cols=248 Identities=16% Similarity=0.124 Sum_probs=195.9
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-- 589 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 589 (1093)
..|....+++.+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.++.+++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999984 56778899999999999999999999999999884
Q ss_pred ------CCChhHHHHhhhhhhcccchHHHHHHHHHhhhcC-----C--CCChHHHHHhHhHHHHHHHhhcccCchHHHHH
Q 001357 590 ------GKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-----D--GKDSYATLSLGNWNYFAALRNEKRAPKLEATH 656 (1093)
Q Consensus 590 ------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-----~--~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~ 656 (1093)
|....++..+|.++...|++++|+..|.+++... + .....++..+|.+ |... |+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------~~ 168 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL-CQNQ------------GK 168 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTT------------TC
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-HHHc------------CC
Confidence 5556789999999999999999999999999863 2 1244577788888 8887 99
Q ss_pred HHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcC----CCCCCchhHHHHH----
Q 001357 657 LEKAKELYTRVIVQ--------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG----SVFVQMPDVWINL---- 720 (1093)
Q Consensus 657 ~~~A~~~~~~~l~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~~~~l---- 720 (1093)
+++|+.+|++++.. .|....++..+|.++...|++++|+.+|+++++..+. ...+.....+..+
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 99999999999998 7778889999999999999999999999999987542 1111223333333
Q ss_pred --HHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 721 --AHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 721 --g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
+..+...+.+.+|+..+..++.. .+..+.++..+|.+|...|++++|..+|++++.+.|.
T Consensus 249 ~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 249 ECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 44455567777778888887765 3445889999999999999999999999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=181.62 Aligned_cols=252 Identities=21% Similarity=0.170 Sum_probs=174.8
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH-- 192 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-- 192 (1093)
.+|....+++.+|.+++..|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999999999999999999984 56678889999999999999999999999999873
Q ss_pred ---CCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 193 ---PSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 193 ---p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
++. ...++..+|.++...|++++|+..|.+++.+. |....++..+|.++...|+ +.+|+..|.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~ 178 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK---YEEVEYYYQR 178 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC---HHHHHHHHHH
Confidence 222 26678899999999999999999999998873 4556677788888888877 8888888888
Q ss_pred HHHh--------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC------CCCchHHHHHHHHHHHhcCCHHHHH
Q 001357 260 AFEI--------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH------GPTKSHSYYNLARSYHSKGDYEKAG 325 (1093)
Q Consensus 260 al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1093)
++.. .|....++..++.++...|++++|+.++.+++..... .+.....+.
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~---------------- 242 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM---------------- 242 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH----------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH----------------
Confidence 8776 4555555666666666666666666666655532100 000000000
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
....+..++..+...+.+.+|+..+..+....|....++..+|.+|...|++++|+.+|++++.+
T Consensus 243 ---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 ---------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11223334445556667777777888888777878888888888888888888888888888887
Q ss_pred CCC
Q 001357 406 DPR 408 (1093)
Q Consensus 406 ~p~ 408 (1093)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 664
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-15 Score=170.40 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCC---CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chh
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNH---GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIF 343 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~ 343 (1093)
++.+|..++..|++++|+..+.+++..... .+..+.+++.+|.+|...|+++.|+.++.+++...+..+. ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 344555555566666666666555543322 1223445555555555555665555555555553332221 233
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYP---D---NCETLKALGHIYVQLGQIEKAQELLRKAAK-----IDPRDAQA 412 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~---~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~p~~~~~ 412 (1093)
++..+|.++...|++++|+.+|.+++...+ + ...++..+|.+|...|++++|+.+|.+++. .+|....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 445555555555555555555555554321 1 123444555555555555555555555554 33444444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
+..+|.++ ..|++++|+.++++++.+.+..+.......+..++.++...|+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 44455444 4455555555555544443333222222333344444444444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-15 Score=168.41 Aligned_cols=278 Identities=14% Similarity=0.062 Sum_probs=163.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----HH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP-----GA 198 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~ 198 (1093)
.++..+|.+++..|++++|+..+++++...|.+. .++..+|.++...|++++|+..+.+++...|... ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3456678888888888888888888888776542 2567778888888888888888888887654431 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLD--------PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
++..+|.++...|++++|+..|.+++.+. |....++..+|.++...|+ +++|+..+.+++...+...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~-- 169 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ-- 169 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHhhccC--
Confidence 35677888888888888888888877753 2234455566666666666 6666666666666554310
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc--hhhH--H
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF--IFPY--Y 346 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~--~ 346 (1093)
.+....++..+|.++...|++++|..++.+++......... .... .
T Consensus 170 ------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 170 ------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp ------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 01122344445555555555555555555554432211111 0111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR------DAQAFIDL 416 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~------~~~~~~~l 416 (1093)
.++.++...|++++|..++.+++...|.. ...+..++.++...|++++|...+++++...+. ...++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 23334555555555555555555443321 223455566666666666666666665544221 12355556
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 417 GELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 417 a~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+.++ ..|++++|...+.+++.+.+.
T Consensus 300 a~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6666 666666666666666666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-15 Score=167.94 Aligned_cols=290 Identities=15% Similarity=0.083 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG----AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
.++..+|.+++..|++++|+..+++++...|.... .++..+|.++...|+++.|+..|.+++.+.|.....+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---- 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH----
Confidence 45677788888888888888888888888775532 2466778888888888888888888877644221100
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC---C--CCCchHHHHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---H--GPTKSHSYYNLAR 313 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~--~~~~~~~~~~la~ 313 (1093)
....++..++.++...|++++|+.++..++.... . .+....++..+|.
T Consensus 91 ---------------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 143 (373)
T 1hz4_A 91 ---------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143 (373)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 0012233444555555555555555555543321 1 1345567888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCC--CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--c-HHHH----HHHHH
Q 001357 314 SYHSKGDYEKAGLYYMASVKEINK--PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD--N-CETL----KALGH 384 (1093)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~-~~~~----~~la~ 384 (1093)
++...|++++|..++.+++...+. ++....++..+|.++...|++++|+.++++++...+. . .... ..++.
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 999999999999999999876543 2235567889999999999999999999999876322 2 1211 13456
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIH 458 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~ 458 (1093)
++...|++++|..++.+++...|.. ...+..++.++ ..|++++|...+..++...+..+.... ..++..++.++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 6889999999999999998776543 34567888999 999999999999999998776443222 36889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcchhhhh
Q 001357 459 FEKGEFESAHQSFKDALGDGIWLTL 483 (1093)
Q Consensus 459 ~~~g~~~~A~~~~~~al~~~~~~~~ 483 (1093)
...|++++|...|.+++........
T Consensus 304 ~~~g~~~~A~~~l~~al~~~~~~g~ 328 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALKLANRTGF 328 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhCCHHHHHHHHHHHHHHhccccH
Confidence 9999999999999999987654433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=172.73 Aligned_cols=361 Identities=14% Similarity=0.096 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
.+|..+|..+...|++.+|+..|.++ .+...+..++.++...|++++|+.++..+.+. .++ +.+...+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---~~~-~~i~~~L 100 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARE-SYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---Ccc-chhHHHH
Confidence 35555555555555555555555432 12346666666777777777777777776652 112 3445667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHH
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGA 427 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~ 427 (1093)
+.+|.+.|++.++..++. .| +..++..+|..+...|++++|..+|.++ ..|..++.++ ..|++++
T Consensus 101 i~~Y~Klg~l~e~e~f~~-----~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-----GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp --------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHc-----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHH
Confidence 777777788777776664 23 3457788888888888888888888765 3577778877 8888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhh
Q 001357 428 ALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQL 507 (1093)
Q Consensus 428 A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1093)
|+..+.++. .+.+|..++.++...|+++.|..+.....
T Consensus 167 AVea~~KA~----------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-------------------------------- 204 (449)
T 1b89_A 167 AVDGARKAN----------STRTWKEVCFACVDGKEFRLAQMCGLHIV-------------------------------- 204 (449)
T ss_dssp HHHHHHHHT----------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT--------------------------------
T ss_pred HHHHHHHcC----------CchhHHHHHHHHHHcCcHHHHHHHHHHHH--------------------------------
Confidence 888877761 36777888888888888888855443211
Q ss_pred hhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 001357 508 FHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR--NNLQLSIELVNEA 585 (1093)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~a 585 (1093)
..|+. ...++.+|.+.|.+++|+.+++.++..++.....+..++.++.+- ++..+.++.|...
T Consensus 205 ------------~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 205 ------------VHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 269 (449)
T ss_dssp ------------TCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred ------------hCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 22322 335777788888888888888888888888888888888777644 4666677777766
Q ss_pred HHHcC-----CChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-----------CChHHHHHhHhHHHHHHHhhcccC
Q 001357 586 LKVNG-----KYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-----------KDSYATLSLGNWNYFAALRNEKRA 649 (1093)
Q Consensus 586 l~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-----------~d~~~~~~l~~~~y~~~~~~~~~~ 649 (1093)
+.+.| .++.+|..+..+|...++|+.|..+.-......-. .+...+...... |.
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~f-yl--------- 339 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF-YL--------- 339 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHH-HH---------
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHH-HH---------
Confidence 66667 77888889999999999999888765543221111 112222222322 22
Q ss_pred chHHHHHHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh
Q 001357 650 PKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727 (1093)
Q Consensus 650 ~~~~~~~~~~A~~~~~~~l--~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~ 727 (1093)
+....++..+..++ .++| .....++...|++.-...++..+... ++..|--.+-.+|...
T Consensus 340 -----~~~p~~l~~ll~~l~~~ld~------~r~v~~~~~~~~l~l~~~yl~~v~~~-------n~~~vnealn~l~iee 401 (449)
T 1b89_A 340 -----EFKPLLLNDLLMVLSPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQNH-------NNKSVNESLNNLFITE 401 (449)
T ss_dssp -----HHCGGGHHHHHHHHGGGCCH------HHHHHHHHHTTCTTTTHHHHHHHHTT-------CCHHHHHHHHHHHHHT
T ss_pred -----hcCHHHHHHHHHHHHhccCc------HHHHHHHHHcCCcHHHHHHHHHHHHh-------hHHHHHHHHHHHHHhh
Confidence 22334455555555 2332 23345567788888888888777654 4667777788889998
Q ss_pred cCHHHHHHHHHHHHHhh
Q 001357 728 GNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 728 g~~~~A~~~~~~al~~~ 744 (1093)
.+|.. ++..+..|
T Consensus 402 ed~~~----lr~si~~~ 414 (449)
T 1b89_A 402 EDYQA----LRTSIDAY 414 (449)
T ss_dssp TCHHH----HHHHHHHC
T ss_pred hhHHH----HHHHHHHh
Confidence 88864 34445544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.9e-15 Score=159.13 Aligned_cols=242 Identities=10% Similarity=-0.026 Sum_probs=186.0
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HHc-
Q 001357 139 LAKGE-VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RYSDSLEFYKRALQVHPSCPGAIRLGIGLCR----YKL- 210 (1093)
Q Consensus 139 ~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~Al~~~~~al~~~p~~~~~~~~~la~~~----~~~- 210 (1093)
...|. .++|+.++..++..+|++..+|..++.++...| .+++++.++..++..+|.+ ..+|...+.++ ..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHHHHHHHHHhcc
Confidence 34444 468999999999999999999999999999999 9999999999999999999 67788888888 777
Q ss_pred --CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 211 --GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIR--KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 211 --g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~--~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
+++++++.++.+++..+|.|..+|...+.+....+. +. +++..+.+++..+|.+..+|...+.++...+...
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~---~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~- 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL---HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA- 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC-
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc-
Confidence 789999999999999999999999999999988887 77 8999999999999999888877776665554300
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH-HHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS-ALTNF 365 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~ 365 (1093)
....+++++.++.+++. ..|.+..+|+.++.++...|+... ...++
T Consensus 198 ------------------------------~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 198 ------------------------------TDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ------------------------------hhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 00015566666666665 456666667666666666666444 33455
Q ss_pred HHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Q 001357 366 EKVLEIY---PDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPRDAQAFIDLGE 418 (1093)
Q Consensus 366 ~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~~p~~~~~~~~la~ 418 (1093)
.+++... |.++.++..++.+|...|+.++|+++|+.+.. .+|.....|...+.
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 5555544 66677777777777777777777777777775 57777666665544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=155.05 Aligned_cols=139 Identities=12% Similarity=0.010 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+++++|+..|.+++..+|.++..++.+|.+|+..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA-FQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
+++.++|++ +.+++.+|.++..+|++++|... ++++++++|+++.++..++.++...|+
T Consensus 90 ~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999 77899999999999999877765 589999999999999988888877664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-15 Score=149.80 Aligned_cols=172 Identities=17% Similarity=0.212 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
...++..+|.+|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++...|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYS-----------QAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHH-----------HHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4556777787777777666 88888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+.++..+|.++...|++++|+.+|++++...|.+ ..+++.+|.++...|++++|+..|.+++...|.++.++..+|.++
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 8888888888888888888888888888888887 677888888888888888888888888888888888888888888
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
...|+ +++|+..+.+++..+|.+.
T Consensus 155 ~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 155 EQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred HHcCC---HHHHHHHHHHHHHcCCCch
Confidence 88888 8888888888888777654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-17 Score=155.46 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=133.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
+|.++...|++++|+..|++++..+|.++.+++.+|.+|+..|+|++|+..|++++..+|++ +.+++.+|.++..+|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-PKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCch
Confidence 67888889999999999999999999999999999999999999999999999999999999 78899999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHH-HHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK-MQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~-~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
++|+..|+++++++|+++.+++.+|.++...|+ +.+|... ++++++++|+++.++..++.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDV---TDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS---SSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 8777765 589999999999999888888877774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-16 Score=187.85 Aligned_cols=200 Identities=11% Similarity=-0.016 Sum_probs=172.8
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVL--------EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
..+|.++.+++..| +..|++++|+..|++++ ..+|++..+++.+|.++...|++++|+..|++++..+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 56888888888777 78899999999999999 88999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
++ ..+++.+|.++..+|++++|+..|+++++++|++..+++.+|.++...|+ +++ +..|+++++++|.++.+++.
T Consensus 465 ~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~---~~~-~~~~~~al~~~P~~~~a~~~ 539 (681)
T 2pzi_A 465 WR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN---TDE-HKFYQTVWSTNDGVISAAFG 539 (681)
T ss_dssp CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---CCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---hHH-HHHHHHHHHhCCchHHHHHH
Confidence 99 78899999999999999999999999999999999999999999999999 999 99999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA-GLYYMASV 332 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 332 (1093)
+|.++...|++++|+..+++++.. .|....+++.+|.++...+..+++ ...+..++
T Consensus 540 lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 540 LARARSAEGDRVGAVRTLDEVPPT---SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCTT---STTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhccc---CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 999999999999999999888754 467778888888888776663333 33333333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=155.32 Aligned_cols=167 Identities=17% Similarity=0.103 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG----------------QACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----------------la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
++..++..|..++..|++++|+.+|++++..+|+++.+++. +|.++...|++++|+..|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999998 88888888888888888888888
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
.+|++ ..+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++...+. .....+...+.+++...|. ..+
T Consensus 83 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~a 159 (208)
T 3urz_A 83 KAPNN-VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSSPTKM-QYA 159 (208)
T ss_dssp HCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCHH-HHH
T ss_pred HCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhCCCch-hHH
Confidence 88888 67788888888888888888888888888888888888888888766654 1144555566555432221 123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALA 296 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1093)
++.+|..+...|++++|+..+++++.
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=163.21 Aligned_cols=256 Identities=14% Similarity=0.084 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHc--C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAK--G-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
+|..++.++-+.-+.....| .++.. + ++++|+.+|.++ |.++...|+|++|+..|.++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence 46666777766655433222 12232 2 488999998887 45678889999999999999
Q ss_pred HHhCCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHh-hhHHhHHHHHHH
Q 001357 189 LQVHPS-----CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEALVALAVMDLQA-NEAAGIRKGMEK 256 (1093)
Q Consensus 189 l~~~p~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~la~~~~~~-~~~~~~~~Al~~ 256 (1093)
+.+.+. ....++..+|.+|..+|++++|+.+|++++.+.|.. ..++..+|.++... |+ +++|+..
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~---~~~A~~~ 140 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD---YAKAIDC 140 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC---HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC---HHHHHHH
Confidence 887432 225678889999999999999999999998876532 34556666666664 66 6666666
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 001357 257 MQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN 336 (1093)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 336 (1093)
|++++.+.|... .......++..+|.++..+|++++|+.+|++++...+
T Consensus 141 ~~~Al~~~~~~~-------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 141 YELAGEWYAQDQ-------------------------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHTT-------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCC-------------------------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 666666554221 0001134567777788888888888888888777443
Q ss_pred CCCCc----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHh
Q 001357 337 KPHEF----IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-----TLKALGHIYV--QLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 337 ~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~l~~~l~~ 405 (1093)
..+.. ..+++.+|.++...|++++|+.+|++++.++|.... .+..++..+. ..+++.+|+..|++++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 33221 125677888888888888888888888887776543 2344555554 346788888888888777
Q ss_pred CCCCHHHHHHHHHHH
Q 001357 406 DPRDAQAFIDLGELL 420 (1093)
Q Consensus 406 ~p~~~~~~~~la~~~ 420 (1093)
+|....++..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 777666666555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-15 Score=154.02 Aligned_cols=207 Identities=14% Similarity=0.184 Sum_probs=134.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~ 201 (1093)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+++..|+|++|+..|++++..+|++.. .+++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45678889999999999999999999999988876 468899999999999999999999999999998732 3678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.+|.++..+|.. ....+..++.++...|+ +++|+..|++++..+|+++.+...+..+
T Consensus 83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQ---ARAAFSDFSKLVRGYPNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHH---HHHHHHHHHHHHTTCTTCTTHHHHHHHH----
T ss_pred HHHHHHHhhhhh----------------hhhhhhccchhhcCcHH---HHHHHHHHHHHHHHCcCChhHHHHHHHH----
Confidence 888888776532 11223445555555666 8889999998888888876544322111
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
+.+.. .+ ....+.+|.+|...|++.+|
T Consensus 140 ------------------------------~~~~~--------------~~---------~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 140 ------------------------------VFLKD--------------RL---------AKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp ------------------------------HHHHH--------------HH---------HHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------------------HHHHH--------------HH---------HHHHHHHHHHHHHcCcHHHH
Confidence 10000 00 01123455666666666666
Q ss_pred HHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 362 LTNFEKVLEIYPDNC---ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1093)
Q Consensus 362 ~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~ 409 (1093)
+..|+++++.+|+++ .++..+|.+|...|++++|+..++.+....|++
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 666666666666554 456666666666666666666666665555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=162.92 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 146 QASSAFKIVLEADRDNVPALLGQACVEFNR--G-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1093)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g-~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (1093)
+|..++.++-+.-+.....+ .++.. + ++++|+..|.++ |.+|..+|++++|+.+|.+
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 46677777777665532222 12232 2 488888888776 5567788999999999988
Q ss_pred HHhhCCC------cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 001357 223 ALQLDPE------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1093)
Q Consensus 223 al~~~p~------~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1093)
++.+.+. ...++..+|.++...|+ +++|+.+|.+++.+.|.. |++.
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~~--------------g~~~----------- 114 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTHR--------------GQFR----------- 114 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHT--------------TCHH-----------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHc--------------CCHH-----------
Confidence 8887432 24567777777777777 777777777777654321 2211
Q ss_pred ccCCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 297 VTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASVKEINKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 372 (1093)
..+.++..+|.+|... |++++|+.+|++++...+.... ...++..+|.++...|++++|+.+|++++...
T Consensus 115 ------~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 115 ------RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1235788899999996 9999999999999986543222 24678999999999999999999999999998
Q ss_pred CCcHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHH---hcCCHHHHHHHHHHHHH
Q 001357 373 PDNCE-------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA-----FIDLGELL---ISSDTGAALDAFKTART 437 (1093)
Q Consensus 373 p~~~~-------~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~-----~~~la~~~---~~~~~~~A~~~~~~a~~ 437 (1093)
|.+.. ++..+|.++...|++++|+..|++++.++|..... +..++..+ ..+++.+|+..|.+++.
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 87543 67899999999999999999999999999886553 44455555 34678999999888766
Q ss_pred HHHh
Q 001357 438 LLKK 441 (1093)
Q Consensus 438 ~~~~ 441 (1093)
+.|.
T Consensus 269 l~~~ 272 (292)
T 1qqe_A 269 LDKW 272 (292)
T ss_dssp CCHH
T ss_pred cHHH
Confidence 6554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-15 Score=147.34 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..++..+|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999888 67788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 287 (1093)
...|++++|+..|.+++..+|.+..++..+|.++...|+ +++|+..+.+++...|.++.++..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR---FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999998888 89999999999988888887777777777777777777
Q ss_pred HHHHHHHHhcc
Q 001357 288 EQLTETALAVT 298 (1093)
Q Consensus 288 ~~~~~~al~~~ 298 (1093)
..++..++...
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 77777766544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-15 Score=152.04 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=108.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHH----------------HHHHHHHhchhhhh
Q 001357 39 PLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNA----------------LGVYYTYLGKIETK 102 (1093)
Q Consensus 39 ~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~----------------la~~y~~~g~~~~~ 102 (1093)
+.+.++..|..++..|++++|+..|++++...|. ...++.. +|.+|..+|+..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~-- 71 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYD-- 71 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHH--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHH--
Confidence 5678999999999999999999999999876442 3334444 666666555544
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hHH
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YSD 180 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~~ 180 (1093)
+|+..|++++.++|.++.+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.+++..|. ...
T Consensus 72 ---------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 72 ---------KAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp ---------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666655543 334
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001357 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 181 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1093)
+...|.+++. |......++.+|.++..+|++++|+..|+++++++|+
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4455555432 2222234555666666666666666666666666664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=140.28 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=112.0
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001357 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
++..++|..+..+..+|..++..|+|++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++.++|++ ..
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
+++.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 899999999999999999999999999999999999888765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-15 Score=182.95 Aligned_cols=173 Identities=13% Similarity=0.045 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHH--------hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 001357 107 EEHFILATQYYNKAS--------RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY 178 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~--------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 178 (1093)
.+++.+|+..|++++ ..+|.+..+++.+|.+++..|++++|+..|++++..+|++..+++.+|.++...|++
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~ 483 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY 483 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence 456779999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1093)
++|+..|++++..+|++ ..+++.+|.++..+|++++ +..|+++++++|++..+++.+|.++...|+ +++|+..|+
T Consensus 484 ~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~ 558 (681)
T 2pzi_A 484 DSATKHFTEVLDTFPGE-LAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGD---RVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999 7789999999999999999 999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 259 RAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
++++++|.+..++..++.+++..+..
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC-----
T ss_pred hhcccCcccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999887763
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-13 Score=146.53 Aligned_cols=167 Identities=11% Similarity=-0.007 Sum_probs=151.8
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--hH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--YS 179 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~~ 179 (1093)
+|+.++++++.++|.+..+|..++.++...|. +++++.++..++..+|.+..+|..++.++...|. +.
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~ 127 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 127 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHH
Confidence 79999999999999999999999999988776 7899999999999999999999999999999994 89
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-----------H
Q 001357 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRALQLDPENVEALVALAVMDLQANE-----------A 247 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-----------~ 247 (1093)
+++.++.+++..+|.+ ..+|...+.++...|. +++++.++.+++..+|.|..+|..++.+...... .
T Consensus 128 ~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~ 206 (331)
T 3dss_A 128 RELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 206 (331)
T ss_dssp HHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCH
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccch
Confidence 9999999999999999 7789999999999999 6999999999999999999999999998887621 1
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
+.+.+++.++.+++..+|++..+|+.+..++.
T Consensus 207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 207 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34899999999999999999988876655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-14 Score=149.22 Aligned_cols=205 Identities=12% Similarity=0.096 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---HHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE---ALV 235 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~ 235 (1093)
++.+++.+|..++..|+|++|+..|++++...|.++ ..+++.+|.+++.+|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 466788888888889999999999999988888763 357888888888888888888888888888888754 667
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1093)
.+|.++...+. . . ...+..++..+
T Consensus 83 ~~g~~~~~~~~---~-----~------------------------------------------------~~~~~~~~~~~ 106 (225)
T 2yhc_A 83 MRGLTNMALDD---S-----A------------------------------------------------LQGFFGVDRSD 106 (225)
T ss_dssp HHHHHHHHHHC---------------------------------------------------------------------
T ss_pred HHHHHHHhhhh---h-----h------------------------------------------------hhhhhccchhh
Confidence 77777665542 0 0 01233455566
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1093)
...|++++|+..|.+++...|..+....+...++.+.. ........+|.+|...|++.+|
T Consensus 107 ~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~--------------------~~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 107 RDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD--------------------RLAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp -CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHTCHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCcHHHH
Confidence 67788999999999998854433332222222222221 1123446789999999999999
Q ss_pred HHHHHHHHHhCCCCH---HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 396 QELLRKAAKIDPRDA---QAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~---~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+..|++++...|+++ .++..++.++ ..|++++|+..++.+....|.
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 999999999999986 6799999999 999999999999987765443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=159.80 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCC
Q 001357 107 EEHFILATQYYNKASRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~ 177 (1093)
...|.+|+..+.++...+ |..+.++..+|.++...|++++|+.+|.+++.. .|....++..+|.++...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 455667777777766544 667889999999999999999999999999977 35567889999999999999
Q ss_pred hHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHHHHHHHHHH
Q 001357 178 YSDSLEFYKRALQVH--------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL--------DPENVEALVALAVMD 241 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~--------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~ 241 (1093)
+++|+.+|.+++... |.. ..++..+|.++..+|++++|+..|++++.+ .|....++..+|.++
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDV-AKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999872 333 677889999999999999999999999988 666778888899999
Q ss_pred HHhhhHHhHHHHHHHHHHHHHh
Q 001357 242 LQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
...|+ +++|+..|.+++..
T Consensus 180 ~~~g~---~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 180 LKQGK---YQDAETLYKEILTR 198 (283)
T ss_dssp HHHTC---HHHHHHHHHHHHHH
T ss_pred HHcCC---HHHHHHHHHHHHHH
Confidence 99888 88999999888876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-14 Score=155.32 Aligned_cols=212 Identities=18% Similarity=0.220 Sum_probs=153.2
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---- 335 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---- 335 (1093)
|....++..+|.+++..|++++|+.++.+++... ...+....++..+|.+|...|++++|+.+|.+++...
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4455666666666666666666666666666543 3345666788888888888999999999888888743
Q ss_pred -CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 001357 336 -NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI- 405 (1093)
Q Consensus 336 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 405 (1093)
+..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 234667788899999999999999999999999988 6667788999999999999999999999999876
Q ss_pred --------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 406 --------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 406 --------~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
.+.....+..++..+ ..+....+ ..+..+.......... ....++..+|.+|...|++++|+.+|+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDS-APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566777777766 43333322 2333343333332221 12578899999999999999999999999
Q ss_pred Hhc
Q 001357 475 LGD 477 (1093)
Q Consensus 475 l~~ 477 (1093)
+..
T Consensus 279 l~~ 281 (283)
T 3edt_B 279 SRN 281 (283)
T ss_dssp HTT
T ss_pred HHh
Confidence 873
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-13 Score=144.34 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNR-G-RYSDSLEFYKRA 188 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-g-~~~~Al~~~~~a 188 (1093)
+|+.++++++.++|.+..+|..++.++...| .+++++.++..++..+|.+..+|..++.++... + ++.+++.++.++
T Consensus 72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 7999999999999999999999999999999 599999999999999999999999999999998 8 999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh----HHhHHHHHHH
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLG--------KARQAFQRALQLDPENVEALVALAVMDLQANE----AAGIRKGMEK 256 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----~~~~~~Al~~ 256 (1093)
+..+|.+ ..+|...+.++..+|.++ +++..+.++++.+|.|..+|...+.+....+. ...+.+++.+
T Consensus 152 L~~dpkN-y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 152 LLPDPKN-YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp TSSCTTC-HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 9999999 778999999999998888 99999999999999999999999999887763 2347899999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 257 MQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 257 ~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
+.+++..+|.+..+|+.+..++...|..
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998888877764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=140.77 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+-..|.+++.++|.++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|+|++|+..|++++.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
+|++ +.+++.+|.||..+|++++|+..|++++.+.|+..
T Consensus 100 ~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKND-YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSC-CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999 77899999999999999999999999999999865
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-13 Score=144.40 Aligned_cols=253 Identities=13% Similarity=0.005 Sum_probs=193.7
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 139 LAKGEVE-QASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 139 ~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...|.+. +|+.++..++..+|.+..+|...+.++...+. +.+++.++..++..+|.+ ..+|...+.++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-y~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 3556654 89999999999999999999999999988776 789999999999999999 77899999999
Q ss_pred HHcCC--HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 208 YKLGQ--LGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 208 ~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
..+|. +++++.++.+++..+|.|..+|...+.+....|.. +.+++.++.+++..+|.+..+|...+.++...+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~--~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 99994 89999999999999999999999999998888751 489999999999999999999999888876653311
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc----------
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL---------- 355 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------- 355 (1093)
.+ +. .+ -...+.+++++.++.+++. ..|.+..+|+.+..++...
T Consensus 197 ~~--------------~~-------~~--~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~ 250 (331)
T 3dss_A 197 DS--------------GP-------QG--RLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEK 250 (331)
T ss_dssp -----------------------------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHH
T ss_pred cc--------------cc-------cc--ccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHH
Confidence 00 00 00 0001335667777777776 4566666665554444444
Q ss_pred -CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 356 -GDFRSALTNFEKVLEIYPDNCETLKALGHIYV---QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 356 -g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
+.+++++.++.+++...|++.-.+..++.+.. ..+..++...++.++++++|....-|..+..-+
T Consensus 251 ~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 45788888888888888888655544444332 246777888888888888888777766665543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=144.49 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=132.6
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
+|.....++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| + +.++..+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~ 79 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLI 79 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHH
Confidence 4556677889999999999999999999999999999999999999999999999999999999999999 6 4445444
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHH
Q 001357 204 GLCR-YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFF 280 (1093)
Q Consensus 204 a~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~ 280 (1093)
+.+. ...+....|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|.. +.++..++.++..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR---DEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 5442 233344567888888888899888888889988888888 888888888888888764 4467777777777
Q ss_pred cCChHHHHHHHHHHH
Q 001357 281 TGQHFLVEQLTETAL 295 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al 295 (1093)
.|++++|...|.+++
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 777777776666655
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=144.35 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=133.9
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...| ++.....++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~ 80 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIA 80 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHH
Confidence 344456677788888888888888888888888888888888888888888888888888888887776 333333333
Q ss_pred hHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchh
Q 001357 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1093)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1093)
.+.+... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...|+. ..+.
T Consensus 81 ~~~~~~~------------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 145 (176)
T 2r5s_A 81 KLELHQQ------------AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGE 145 (176)
T ss_dssp HHHHHHH------------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTH
T ss_pred HHHHHhh------------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHH
Confidence 3311111 223357899999999999999999999999999999999999999999988732 2466
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
++.++|.++..+|++++|+..|++++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999998864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-14 Score=151.93 Aligned_cols=168 Identities=11% Similarity=-0.023 Sum_probs=155.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|.++..++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+. ...++..+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT-RYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-HHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999965 66677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcC
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC--AMALNYLANHFFFTG 282 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~g 282 (1093)
..+...++...|+..|++++..+|+++.+++.+|.++...|+ +++|+..|.+++..+|++ ..++..++.++...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~---~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR---NEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 889999999999999999999999999999999999999999 999999999999999988 778888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 001357 283 QHFLVEQLTETALA 296 (1093)
Q Consensus 283 ~~~~A~~~~~~al~ 296 (1093)
+.++|...+++++.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877663
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=133.06 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=113.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 154 VLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 154 al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
+..++|+.+.++..+|..+++.|+|++|+..|++++..+|.+ +.+++.+|.|+..+|++++|+..|+++++++|+++.+
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 345789999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 234 LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 234 ~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
|+.+|.++...|+ +++|+..|+++++++|+++.++..++.+
T Consensus 84 ~~~lg~~~~~~~~---~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMRE---WSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999 9999999999999999999988887765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-13 Score=142.68 Aligned_cols=245 Identities=11% Similarity=-0.047 Sum_probs=205.6
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChhHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSM 598 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 598 (1093)
..+....++..+..+....+..++|+.++.+++..+|++..+|+..+.++...| .+++++.++..++..+|.+..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 445556666777777777788889999999999999999999999999999999 5999999999999999999999999
Q ss_pred hhhhhhcc-c-chHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHH--------HHHHHHHHHH
Q 001357 599 LGDLELKN-D-DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLE--------KAKELYTRVI 668 (1093)
Q Consensus 599 l~~~~~~~-g-~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~--------~A~~~~~~~l 668 (1093)
.++++... + ++++++..+.+++...|. +..++...+.+ .... +.++ ++++++.+++
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wv-l~~l------------~~~~~~~~~~~~eELe~~~k~I 194 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWL-YSHF------------STLGRISEAQWGSELDWCNEML 194 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHH-HHHH------------HHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHH-HHHh------------ccccccchhhHHHHHHHHHHHH
Confidence 99999888 7 899999999999999887 78888888877 6666 5555 9999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcCC-------chhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH---------
Q 001357 669 VQHTSNLYAANGAGVVLAEKGQ-------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL--------- 732 (1093)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~-------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~--------- 732 (1093)
+.+|.|..+|+..+.++...+. +++++.++.+++...| .+..+|+.+..++...|+...
T Consensus 195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-----~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-----HNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999887 6899999999999998 889999999999988776410
Q ss_pred -------HH-HHHHHHHHhhcC-------CCCHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhCCCC
Q 001357 733 -------AM-KMYQNCLRKFYY-------NTDAQILLYLARTHYEAEQWQDCKKSLLRAI-HLAPSN 783 (1093)
Q Consensus 733 -------A~-~~~~~al~~~~~-------~~~~~~l~~la~~~~~~g~~~~A~~~~~~al-~~~P~~ 783 (1093)
.. ..-+.|+..... ...+.++..|+.+|...|+..+|.++|+.+. +.+|-.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 11 222222322222 2458899999999999999999999999987 567754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=166.46 Aligned_cols=164 Identities=17% Similarity=0.126 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
+++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh---hhHHhHHHHHHHHHHHHHhC
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---~~~~~~~~Al~~~~~al~~~ 264 (1093)
++..+|++ ..+++.+|.++..+|++++|+..|+++++++|++..++..++.++... |+ +++|+..|++++..+
T Consensus 83 al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 83 ASDAAPEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHHHHHHHHHHT
T ss_pred HHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHhcC
Confidence 99999999 788999999999999999999999999999999999999999999999 66 999999999999999
Q ss_pred CCcHHHHHHHH
Q 001357 265 PYCAMALNYLA 275 (1093)
Q Consensus 265 p~~~~~~~~la 275 (1093)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99877666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-13 Score=145.64 Aligned_cols=173 Identities=9% Similarity=0.034 Sum_probs=155.7
Q ss_pred hcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHH
Q 001357 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633 (1093)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~ 633 (1093)
..|.....++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++...|. ..+..+.
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~ 190 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLV 190 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHH
Confidence 348999999999999999999999999999999999999999999999999999999999999999998884 4444444
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1093)
.+.. +... +....|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++...|+. ..
T Consensus 191 ~~~~-l~~~------------~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~---~~ 254 (287)
T 3qou_A 191 AQIE-LLXQ------------AADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA---AD 254 (287)
T ss_dssp HHHH-HHHH------------HTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG---GG
T ss_pred HHHH-HHhh------------cccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---cc
Confidence 4444 5555 778889999999999999999999999999999999999999999999999832 23
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+.++.++|.+|...|+.++|+..|++++..
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999864
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=134.51 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
+-..|.+++.++|.++.+++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
|++ +.+++.+|.++..+|++++|+..|++++.++|+++...
T Consensus 86 p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 86 IXE-PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 999 77899999999999999999999999999999876553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=134.71 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=110.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
..|++++..+|+++.+++.+|.+++..|+|++|+..|++++..+|.+ +.+|+.+|.++..+|++++|+.+|++++.++|
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-VDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 45677788899999999999999999999999999999999999999 78899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
+++.+++.+|.++...|+ +++|+..|++++.+.|+.+
T Consensus 102 ~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999 9999999999999999876
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-15 Score=162.68 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHH----HHhcCCCChhhHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 108 EHFILATQYYNK----ASRIDMHEPSTWVGKGQLLL------------AKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1093)
Q Consensus 108 ~~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1093)
+.|++|+..+.. ++.+.|.. +|..+|.... ..+++++|+..|+.++...|.++.++..+|.+
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 356689999999 88888876 4444554432 45678889999999998899999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 172 EFNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
++..|+|++|+..|++++...|.+. ..+++.+|.|+..+|++++|+..|.+++.++|+++.+++.+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 236 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR 236 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999984 57899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHH-HHHHHHHH
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV-EQLTETAL 295 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 295 (1093)
|.++...|+ +++|+..|++++.++|.+..++..++.++...|+++++ ...+..++
T Consensus 237 g~~~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 237 GEAHLAVND---FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999999998888887 44555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=130.59 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
-..|.+++..+|.+...++.+|.+++..|++++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+|
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
++ +.+++.+|.++..+|++++|+..|++++.++|+++........+
T Consensus 84 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 84 NE-PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99 77899999999999999999999999999999887665544443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=142.64 Aligned_cols=230 Identities=14% Similarity=0.100 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA-KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
.+++.+|..++.++.+..+.. ++. .++++.|..+|.++ +.++...|+|++|+..|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 467779999999998876642 122 58999999999876 56788899999999999
Q ss_pred HHHHHhCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 186 KRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE------NVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 186 ~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
.+++...+.. ...++..+|.+|..+|++++|+.+|++++.+.+. ...++..+|.++.. |+ +++|+
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~---~~~A~ 135 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD---LSKAV 135 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC---HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC---HHHHH
Confidence 9999886432 2456788999999999999999999999887432 13456666766666 66 77777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001357 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1093)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1093)
..|++++.+.|... + ......++..+|.+|...|+|++|+.+|.+++..
T Consensus 136 ~~~~~Al~~~~~~~--------------~-----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 136 HLYQQAAAVFENEE--------------R-----------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT--------------C-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--------------C-----------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777766544210 0 0112356778888888888888888888888875
Q ss_pred cCCCCC---chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHH
Q 001357 335 INKPHE---FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-----ETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 335 ~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 397 (1093)
.+..+. ...+++.+|.++...|++++|+.+|++++ .+|... ..+..++..+ ..++.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 432222 23467888888888899999999999998 887543 2344555544 5667655544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=147.22 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=107.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1093)
..|++++|+..|.+++.+.+..+... ...++.++|.+|...|++++|+.+|++++.+....
T Consensus 48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~------------------ 109 (307)
T 2ifu_A 48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN------------------ 109 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT------------------
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc------------------
Confidence 55566666666666665555432211 13566677777777777777777777776632100
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHHcC
Q 001357 500 LQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY------VDAYLRLAAIAKARN 573 (1093)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g 573 (1093)
........++.++|.+|.. |++++|+.+|++++...|.. ..++..+|.++...|
T Consensus 110 -------------------g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g 169 (307)
T 2ifu_A 110 -------------------GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169 (307)
T ss_dssp -------------------TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC
Confidence 0111234566777777777 77777777777777765532 466777777777777
Q ss_pred CHHHHHHHHHHHHHHcCCCh------hHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 574 NLQLSIELVNEALKVNGKYP------NALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 574 ~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
++++|+.+|++++.+.|.+. .++..+|.+++..|++++|+..|++++ ..|.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 77777777777777765432 256667777777788888888888877 6554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=140.59 Aligned_cols=206 Identities=13% Similarity=0.016 Sum_probs=152.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH-------HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH-----
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL-------AVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----- 268 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----- 268 (1093)
+..|..+ ..+++..|...|.+++.++|+..++|+.+ +.++...+. ..+++..+++.+.+.|...
T Consensus 11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r---~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWY---SRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHH---TGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHH---HHHHHHHHHHHhcCChhhhhhhhc
Confidence 3444444 46777777777777777777777777777 566666665 6667777777777665432
Q ss_pred ----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 269 ----------------MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 269 ----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
.+...++.++...|+|++|..++..++. ..|... ..+.+|.+++..++|++|+.+|..+.
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 3444577888888888888888877664 335666 88888889999999999999888665
Q ss_pred HhcCCCCC--chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 333 KEINKPHE--FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 333 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
. ..+. ...+++.+|.++...|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|++++..+|
T Consensus 163 ~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 163 K---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp G---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred c---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 1111 13478888999999999999999999887543 44 567888999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001357 408 RDAQAFIDLGE 418 (1093)
Q Consensus 408 ~~~~~~~~la~ 418 (1093)
+ ..++..|..
T Consensus 240 ~-~~~~~aL~~ 249 (282)
T 4f3v_A 240 E-PKVAAALKD 249 (282)
T ss_dssp C-HHHHHHHHC
T ss_pred c-HHHHHHHhC
Confidence 8 766655543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=141.98 Aligned_cols=230 Identities=11% Similarity=0.018 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQ-------ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l-------a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
.++..|.-+ ..+++..|...|.+++..+|..+.+|+++ +.++...+++.+++..+++.+.+.|... ..++.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l-~a~~~ 86 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL-NARIA 86 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG-CCEEE
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh-hhhhc
Confidence 456666665 57888888888888888888888888888 6777777777888888888877777651 11111
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 203 -IGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 203 -la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
.|. | |+ +.. --.-..+.+.++.++...|+ +++|...|..++...|.+. +.+.++.+++.
T Consensus 87 ~~g~-y---~~-----------~~~~v~~r~dl~LayA~~L~~~g~---y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 87 IGGL-Y---GD-----------ITYPVTSPLAITMGFAACEAAQGN---YADAMEALEAAPVAGSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CCTT-T---CC-----------CEEECSSHHHHHHHHHHHHHHHTC---HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH
T ss_pred cCCc-c---cc-----------cccccCCHhHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCchH-HHHHHHHHHHH
Confidence 000 0 00 000 00002223334444444444 4444444444444444444 45555555555
Q ss_pred cCChHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHcCCH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDF 358 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~ 358 (1093)
.+++++|+..+..+.... .+. ...+++.+|.++..+|++++|+.+|.+++.. +..|. ...+++.+|.++..+|+.
T Consensus 148 ~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp TTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCH
Confidence 555555555555333221 111 1358899999999999999999999999841 11144 567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 359 RSALTNFEKVLEIYPDNCETLKALGH 384 (1093)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1093)
++|...|++++..+|. ..+...|..
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 9999999999999998 777666643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-10 Score=131.69 Aligned_cols=209 Identities=11% Similarity=0.007 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTART 437 (1093)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~ 437 (1093)
......+|++++...|..+.+|...+..+...|+.+.|..+|++++.. |.+...++..+.....+. . +..+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~---~---~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEA---V---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTH---H---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhH---H---HHHHHH
Confidence 345678899999999999999999999999999999999999999999 988877776555432221 1 222221
Q ss_pred HH---Hh-----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001357 438 LL---KK-----AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1093)
Q Consensus 438 ~~---~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1093)
.. .. ........+|...+....+.+..+.|..+|.++ ..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-------------------------------- 314 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-------------------------------- 314 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--------------------------------
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--------------------------------
Confidence 11 00 000001356677777777788899999999998 41
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001357 510 RFENDGNHVELPWNKVTVLFNLARLLEQIH-DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588 (1093)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (1093)
.+....++...|.+....+ +++.|..+|+.++...|+.+..+...+......|+.+.|..+|+++
T Consensus 315 -----------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~--- 380 (493)
T 2uy1_A 315 -----------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL--- 380 (493)
T ss_dssp -----------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS---
T ss_pred -----------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 1123445655666655555 6999999999999999998888888888888999999999999987
Q ss_pred cCCChhHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001357 589 NGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1093)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 621 (1093)
+....+|.....+....|+.+.+...+++++.
T Consensus 381 -~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 -EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678888888888889999999998988775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=156.85 Aligned_cols=155 Identities=16% Similarity=0.107 Sum_probs=129.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
.|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CChHHHHHHHHHHHhc
Q 001357 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT---GQHFLVEQLTETALAV 297 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~ 297 (1093)
+++++++|++..++..+|.++...|+ +++|+..|+++++.+|.++.++..++.++... |++++|...+.+++..
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQ---AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 99999999999999999999999999999999 8999999999888876
Q ss_pred cC
Q 001357 298 TN 299 (1093)
Q Consensus 298 ~~ 299 (1093)
.+
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-12 Score=118.99 Aligned_cols=134 Identities=25% Similarity=0.493 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
.+|+.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|.. ..+++.+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHH
Confidence 4678888899999999999999999998888888888899999999999999999999999888887 667888899999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
..|++++|+..|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 99999999999999998888888888888888888888 88888888888888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=149.24 Aligned_cols=149 Identities=19% Similarity=0.218 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHc
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNR 175 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~ 175 (1093)
.+|+..|.+++..+|.++.++..+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...
T Consensus 130 ~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 130 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp ECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 368888888888889999999999999999999999999999999999998 69999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHH-H
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKG-M 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~A-l 254 (1093)
|+|++|+..|++++..+|.+ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.+| .
T Consensus 210 g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~ 285 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR---QLAREK 285 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999999988 7777 4
Q ss_pred HHHHHHHHh
Q 001357 255 EKMQRAFEI 263 (1093)
Q Consensus 255 ~~~~~al~~ 263 (1093)
..|.+++..
T Consensus 286 ~~~~~~~~~ 294 (336)
T 1p5q_A 286 KLYANMFER 294 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-12 Score=118.11 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001357 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1093)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1093)
+++.+|.+|...|+.. +|+.+|.+++..+|.++.+++.+|.++...|++++|+..|++++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYD-----------EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHH-----------HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 4667888888887766 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
+..+|.++...|++++|+.+|.+++...|.. ..+++.+|.++...|++++|...|.+++..+|.+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999998 6788999999999999999999999999998863
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=119.65 Aligned_cols=117 Identities=9% Similarity=0.076 Sum_probs=104.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|..+..|+.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Confidence 34466788999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHH
Q 001357 205 LCRYKLGQLGKARQAFQRALQLD------PENVEALVALAVMDL 242 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~ 242 (1093)
.++..+|++++|+..|++++.++ |.+..++..++.+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999 888888777776644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=128.25 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 147 ASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 147 A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
+-..|++++..+|+++.+++.+|.+++..|+|++|+..|++++..+|.+ +.+++.+|.++..+|++++|+..|.+++.+
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456888899999999999999999999999999999999999999999 778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
+|+++.+++.+|.++...|+ +++|+..|.+++.++|.++..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999 999999999999998877644
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-12 Score=128.41 Aligned_cols=174 Identities=10% Similarity=0.052 Sum_probs=132.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG----RYSDSLEFYKR 187 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g----~~~~Al~~~~~ 187 (1093)
+|+.+|.++... .++.+++.+|.+|...+++++|+.+|++++.. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 577788888764 67888888888888888888998888888764 578888888888887 6 88888888888
Q ss_pred HHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHH----hhhHHhHHHHHHHH
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQ----ANEAAGIRKGMEKM 257 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~----~~~~~~~~~Al~~~ 257 (1093)
++.. .+ +.+++.+|.+|.. .+++.+|+.+|++++...| .++.+++.||.+|.. .++ +.+|+.+|
T Consensus 79 A~~~--g~-~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~ 152 (212)
T 3rjv_A 79 AVEA--GS-KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED---DVKASEYF 152 (212)
T ss_dssp HHHT--TC-HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC---HHHHHHHH
T ss_pred HHHC--CC-HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC---HHHHHHHH
Confidence 8653 44 5677888888887 7888888888888888777 347888888888877 555 78888888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhc
Q 001357 258 QRAFEIYPYCAMALNYLANHFFFT-G-----QHFLVEQLTETALAV 297 (1093)
Q Consensus 258 ~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~ 297 (1093)
+++... |.++.+++.|+.+|... | ++++|+.+++++...
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 888777 55555666666666543 2 566666666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=141.44 Aligned_cols=196 Identities=11% Similarity=0.022 Sum_probs=136.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
|.++..++.+|..++..|++++|+..|.+++..+|+++.++..+|.++...|++++|+..|++++..+|++ ..+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg 79 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLG 79 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
.++..+|++++|+..|.+++.++|++...+.......... .++...........|.++.+...++.++ .|++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------AKKKRWNSIEERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHH
Confidence 9999999999999999999999886532222222222221 1122222222334555665555554443 4666
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 001357 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK-GDYEKAGLYYMASV 332 (1093)
Q Consensus 285 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al 332 (1093)
++|+..+..++.. .|.+......++..+... +.+++|..+|.++.
T Consensus 152 ~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 152 ERELEECQRNHEG---HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHTTTSGGGTT---TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhhcc---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666666655543 233334444444444443 44555666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-12 Score=127.66 Aligned_cols=130 Identities=12% Similarity=0.176 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCh--HHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV-EFNRGRY--SDSLE 183 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~-~~~~g~~--~~Al~ 183 (1093)
.+++.+|+..|.+++..+|.++.+|+.+|.+++..|++++|+.+|++++..+|.++.++..+|.+ ++..|++ ++|+.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 56677999999999999999999999999999999999999999999999999999999999999 8899999 99999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
+|++++..+|.+ ..+++.+|.++...|++++|+..|.+++..+|.+......+
T Consensus 103 ~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 103 MIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999999998 77899999999999999999999999999999886554433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-11 Score=126.95 Aligned_cols=172 Identities=19% Similarity=0.116 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC----CHHHHHHHH
Q 001357 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG----DYEKAGLYY 328 (1093)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~ 328 (1093)
|+..|+++.+. .++.+++.++.+|...+++++|+.+|.++... ..+.+++.+|.+|.. + ++++|+.+|
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 44444444433 34445555555555555555555555554432 234555566666555 4 566666666
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHH
Q 001357 329 MASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYP--DNCETLKALGHIYVQ----LGQIEKAQEL 398 (1093)
Q Consensus 329 ~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~ 398 (1093)
.++.. +..+.+++.+|.+|.. .+++.+|+.+|+++....| .++.+++.||.+|.. .+++++|+.+
T Consensus 77 ~~A~~-----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVE-----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHH-----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHH-----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 66654 3445556666666655 5666666666666666554 235666666666666 5566666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-h-cC-----CHHHHHHHHHHHHHH
Q 001357 399 LRKAAKIDPRDAQAFIDLGELL-I-SS-----DTGAALDAFKTARTL 438 (1093)
Q Consensus 399 l~~~l~~~p~~~~~~~~la~~~-~-~~-----~~~~A~~~~~~a~~~ 438 (1093)
|++++.. |.++.+++.|+.+| . .+ ++++|+.+|+++...
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 6666655 44555666666666 2 12 566666666655543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=145.75 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--Ch
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--RY 178 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~ 178 (1093)
++|+..+++++..+|.+..+|+.++.++...|+ +++|+.+++.++..+|.+..+|..++.++...| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 389999999999999999999999999999998 999999999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-----------
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDPENVEALVALAVMDLQANE----------- 246 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~----------- 246 (1093)
++++.++.+++..+|.+ ..+|...+.++..+| .+++++..+.++++.+|.+..+|..++.++...+.
T Consensus 126 ~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 126 ARELELCARFLEADERN-FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp HHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred HHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccccc
Confidence 99999999999999999 788999999999999 99999999999999999999999999999887511
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
.+.+++++.++.+++.++|.+..+|+.++.++...+.+++
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2458999999999999999999999999999988887554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=124.95 Aligned_cols=121 Identities=15% Similarity=0.215 Sum_probs=109.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
..|.+++..+|++..+++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-ARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56778888899999999999999999999999999999999999999 78899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
+++.+++.+|.++...|+ +++|+..|++++.++|.++.....
T Consensus 84 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGD---LDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp TCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcchHHH
Confidence 999999999999999999 999999999999999887654433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-11 Score=118.59 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=118.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++..+|.+ ..+++.+|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999998 77899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHhhhHHhHHHHHHHHHHHHHh
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
..+|++++|+..|.+++..+|.+..++..++.+ +...|+ +.+|+..+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHHHcccchHHH
Confidence 999999999999999999999999888555544 666666 88898888876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-12 Score=123.65 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=108.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
++.++..++.+|.+++..|+|++|+.+|++++..+|.++.+++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 85 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRL 85 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence 455678899999999999999999999999999999999999999999999999999999999999999999 7889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
|.++..+|++++|+..|++++.++|++..+++.++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999999999999999999999887766665443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=137.14 Aligned_cols=194 Identities=15% Similarity=-0.007 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+..+|..|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 4 a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYP-----------EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 346778888888888777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.+++.+|.++...|++++|+..|++++..+|++... +...+.... ....+...........|.+......++.+.
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~- 147 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN-FGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh-HHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 999999999999999999999999999998866211 111111111 222333344444456777777777777665
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQLTETALA 296 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 296 (1093)
.|+ +++|+..+.+++..+|.+......+..++... +.++++..+|.++..
T Consensus 148 -~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 -AAE---RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp -HHH---HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred -HHH---HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455 99999999999999999998888888877776 778889999988775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.7e-12 Score=116.81 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=106.3
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
.|.++..++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+.+|++++..+|.+ ..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHH
Confidence 456778888999999999999999999999999999899999999999999999999999999999998888 6778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1093)
|.++..+|++++|+..|.+++..+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999988888888888877665
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=128.69 Aligned_cols=225 Identities=13% Similarity=0.069 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhc
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 605 (1093)
...+.+.+++..+|++.... . .+....+...++..+ . +. |+..+++.+...+.+..++..+|.++..
T Consensus 46 ~~~~~~~Rs~iAlg~~~~~~-------~-~~~~~~a~~~la~~~-~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 46 TLLFYKAKTLLALGQYQSQD-------P-TSKLGKVLDLYVQFL-D-TK---NIEELENLLKDKQNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHHHHHTTCCCCCC-------S-SSTTHHHHHHHHHHH-T-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccCC-------C-CCHHHHHHHHHHHHh-c-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 46666778888888876421 1 112222333333333 2 22 7788888877766667777889999999
Q ss_pred ccchHHHHHHHHHhhhcCC-CCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC------CHHHH
Q 001357 606 NDDWVKAKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS------NLYAA 678 (1093)
Q Consensus 606 ~g~~~~A~~~~~~~l~~~~-~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~a~ 678 (1093)
.|++++|+.++.+.+...+ .....+...++.+ |... |+.+.|.+.++++.+.+|+ .+...
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi-~L~~------------~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV-ALLN------------NNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 9999999999999887765 2355566667777 8887 8999999999999988882 33334
Q ss_pred HHHHHHHHhcC--CchhHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC--------
Q 001357 679 NGAGVVLAEKG--QFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY-------- 746 (1093)
Q Consensus 679 ~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------- 746 (1093)
..-+++....| ++.+|..+|+++.+..| + .+..+++ ++..+|++++|...++.+++.+|.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p-----~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~ 251 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFP-----TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAV 251 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-----SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCC-----CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCC
Confidence 44466666666 89999999999887765 3 2445555 899999999999999988877653
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcch
Q 001357 747 NTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (1093)
Q Consensus 747 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 786 (1093)
+.++.++.+++.+.+..|+ +|.+++.++.+.+|+++.+
T Consensus 252 p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 252 LYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred CCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 6679999999988888997 8899999999999998554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-11 Score=124.86 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.++.+|.+++..|++++|+..|++++ + .++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence 45667777777777777777777764 2 356777777777777777777777777777777776 5667777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 210 LGQLGKARQAFQRALQLDPENV----------------EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
+|++++|+..|++++...|.+. .+++.+|.++...|+ +++|+..|.+++.++|.+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCccc
Confidence 7777777777777777666554 677777777777777 777777777777777765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=125.81 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=118.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHcCCH--
Q 001357 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQL-- 213 (1093)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~-~~~~g~~-- 213 (1093)
.+...|++++|+..|++++..+|.++.+++.+|.+++..|++++|+.+|++++..+|.+ ..+++.+|.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-AELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhcCCcch
Confidence 34567899999999999999999999999999999999999999999999999999998 7789999999 8899998
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
++|+..|.+++..+|++..++..+|.++...|+ +.+|+..|.+++..+|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQAN---YAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999999999999999999999 9999999999999999876443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-11 Score=123.58 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...++.+|..|...|+.. +|+..|.+++ +| ++.+++.+|.++...|++++|+..|++++..+|.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~-----------~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWK-----------GALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHHHHTTCHH-----------HHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCHH-----------HHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 335667888888888776 9999999996 33 788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
.+++.+|.++...|++++|+..|++++...|.+. ..+++.+|.++..+|++++|+..|++++.++
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988762 2789999999999999999999999999999
Q ss_pred CCc
Q 001357 228 PEN 230 (1093)
Q Consensus 228 p~~ 230 (1093)
|++
T Consensus 152 p~~ 154 (213)
T 1hh8_A 152 SEP 154 (213)
T ss_dssp CSG
T ss_pred ccc
Confidence 986
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=113.74 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|..+..+..+|..++..|+|++|+..|.+++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++|+++.+++.+|
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3456789999999999999999999999999999999 788999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIY------PYCAMALNYLANHF 278 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~------p~~~~~~~~la~~~ 278 (1093)
.++...|+ +++|+..|.+++.++ |.+..++..+..+.
T Consensus 80 ~~~~~~~~---~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 TAQIAVKE---YASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhC---HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999 999999999999999 88887777766654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=113.99 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=106.9
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
+|.++..++.+|..++..|++++|+..|++++...|.++.++..+|.++...|++++|+.+|.+++...|.+ ..+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 86 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHH
Confidence 455667888899999999999999999999999999899999999999999999999999999999998888 6778889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
|.++...|++++|+..|.+++..+|++..++..++.++...|+
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888888888888877765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-10 Score=120.10 Aligned_cols=247 Identities=13% Similarity=0.018 Sum_probs=149.3
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC
Q 001357 48 REYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE 127 (1093)
Q Consensus 48 ~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~ 127 (1093)
+-+|-.|.|..++.-+.+....+ +......+...|+.+|+.... . ..+..
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~-----------~~~~~~~~~Rs~iAlg~~~~~------------------~-~~~~~ 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVT-----------DNTLLFYKAKTLLALGQYQSQ------------------D-PTSKL 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCC-----------CHHHHHHHHHHHHHTTCCCCC------------------C-SSSTT
T ss_pred HHHHHhhHHHHHHHHHHhcCccc-----------hHHHHHHHHHHHHHcCCCccC------------------C-CCCHH
Confidence 45566899999998666543221 123555667778888876511 0 11111
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP-SCPGAIRLGIGLC 206 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~ 206 (1093)
..+.-.++.. + .+. |+..|++.+...+.+..+++.+|.++...|++++|+.++.+.+..+| .....++..++.+
T Consensus 71 ~~a~~~la~~-~-~~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi 145 (310)
T 3mv2_B 71 GKVLDLYVQF-L-DTK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV 145 (310)
T ss_dssp HHHHHHHHHH-H-TTT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-h-ccc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence 1122222222 2 233 78888888877666677778899999999999999999999988887 2236778888999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPE------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.++|+.+.|...++++.+.+|+ .....+.-+.+.+..|. +.+.+|+..|+++....|+.......+. ++..
T Consensus 146 ~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~-~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~ 223 (310)
T 3mv2_B 146 ALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK-ETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQ 223 (310)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC-STTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHH
Confidence 99999999999999998888883 22333333444555551 1278888888888777775222111111 5555
Q ss_pred cCChHHHHHHHHHHHhccCC-------CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 281 TGQHFLVEQLTETALAVTNH-------GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
.|++++|...++.++...+. .|.++.++.+++.+....|+ +|.+++.++.+
T Consensus 224 ~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 224 QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 55555555555544432111 13344444444444444443 44444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.2e-12 Score=130.05 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHc
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNR 175 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~ 175 (1093)
.|...+.......+.....+..+|..++..|+|++|+..|.+++...|.++ .++..+|.++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444445566788899999999999999999999999888876 7888899999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
|+|++|+..|.+++..+|.+ ..+++.+|.++..+|++++|+..|++++.++|++..++..++.++...++ ..++.
T Consensus 102 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~~~~ 176 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKIDKNN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE---ARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---HHC--
T ss_pred cCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH---HHHHH
Confidence 99999999999999998888 67788899999999999999999999999999998888888888888776 44444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.7e-11 Score=117.12 Aligned_cols=135 Identities=14% Similarity=0.140 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 159 (1093)
.+....+..+|..|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+..|.+++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 456778889999999888877 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR--LGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
.++.+++.+|.++...|++++|+.+|++++..+|.+ ..++ +.++..+...|++++|+..+.++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999999999999998 5556 44555588899999999999887654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-12 Score=130.18 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-------------
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------------- 196 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------------- 196 (1093)
.....+......|.++.|...+.......+..+..+..+|.+++..|+|.+|+..|.+++...|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 3444556666778899999888877777777788999999999999999999999999999999884
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 197 --GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 197 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
..+++.+|.++..+|++++|+..|.+++.++|.+..+++.+|.++...|+ +++|+..|++++.++|.++.++..+
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l 162 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 27899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHcCChHHHH
Q 001357 275 ANHFFFTGQHFLVE 288 (1093)
Q Consensus 275 a~~~~~~g~~~~A~ 288 (1093)
+.++...++..++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99988887776655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7e-11 Score=109.22 Aligned_cols=120 Identities=27% Similarity=0.503 Sum_probs=105.1
Q ss_pred CCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 124 DMHE-PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 124 ~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
+|.. ..+++.+|.++...|++++|+..|.+++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHH
Confidence 4555 67888899999999999999999999999999999999999999999999999999999999999988 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
+|.++...|++++|+..|.+++..+|.+..++..++.++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999888888877654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-09 Score=123.39 Aligned_cols=208 Identities=7% Similarity=0.002 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 621 (1093)
.....+|++++...|..+..|+..+..+...|+.+.|..+|++++.. |.+..+|..++... ..++. ...++...+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~~--~~~l~~~~~~ 271 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEEAV--YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCTHH--HHHHHHHTC-
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chhHH--HHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999 99988877666552 11211 1111111110
Q ss_pred cC-------CCCC-hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-Cch
Q 001357 622 AT-------DGKD-SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG-QFD 692 (1093)
Q Consensus 622 ~~-------~~~d-~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g-~~~ 692 (1093)
.. +... ...+...+.. .... +..+.|..+|.++ ...+.....+...|.+....+ +.+
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~-~~r~------------~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNY-VLKK------------RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp ---------CHHHHHHHHHHHHHH-HHHH------------HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSH
T ss_pred hccchhhhhcccccHHHHHHHHHH-HHHc------------CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChH
Confidence 00 0001 1122222222 2122 6789999999999 433334455555565555555 699
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHH
Q 001357 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 772 (1093)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~ 772 (1093)
.|..+|+.+++..| +.+..|..++......|+.+.|..+|+++. ....+|......-...|+.+.+..+
T Consensus 338 ~ar~ife~al~~~~-----~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 338 TPYNIFSSGLLKHP-----DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999887 667888888888889999999999999872 2467777777777788999999999
Q ss_pred HHHHHH
Q 001357 773 LLRAIH 778 (1093)
Q Consensus 773 ~~~al~ 778 (1093)
+++++.
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998886
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.4e-11 Score=113.12 Aligned_cols=121 Identities=15% Similarity=0.181 Sum_probs=107.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
.+|.++..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ ..+++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~ 82 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFF 82 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999999999999999998 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHh
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQA 244 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~~ 244 (1093)
+|.++..+|++++|+..|.+++.++|+ +..++..+..+....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 566666665554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=111.63 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRL 201 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~ 201 (1093)
..++..+|..++..|+|++|+..|++++..+|+++.++..+|.+++..|+|++|+..|++++.++|... ..+++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999999999987662 34678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1093)
.+|.++..+|++++|+..|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 8999999999999999999999998885
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=112.36 Aligned_cols=103 Identities=13% Similarity=0.120 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|++ ..+++.+|.++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~ 96 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 96 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999999999998 678899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 209 KLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
..|++++|+..|+++++++|++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999999887643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-11 Score=127.57 Aligned_cols=193 Identities=15% Similarity=0.083 Sum_probs=144.4
Q ss_pred CCCCCChhHHHHHHHhc-CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhch
Q 001357 20 DQLPRDASDILDILKAE-QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGK 98 (1093)
Q Consensus 20 ~~lp~~~~~~~~~l~~e-~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~ 98 (1093)
+-|.-++..++...... +.....+...+..|+.+|++++|+..+.+++...+.. ......+..+..+|.+|...|.
T Consensus 54 ~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (293)
T 2qfc_A 54 AKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH---PEFQQFLQWQYYVAAYVLKKVD 130 (293)
T ss_dssp TTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHhCcCHHHHhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC---hhHHHHHHHHHHHHHHHhcCCC
Confidence 44555566666655433 3456678889999999999999999998876542211 1112344455667777777776
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHH
Q 001357 99 IETKQREKEEHFILATQYYNKASRIDMHE------PSTWVGKGQLLLAKGEVEQASSAFKIVL---EADRDNV----PAL 165 (1093)
Q Consensus 99 ~~~~~~~r~~~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~----~a~ 165 (1093)
.. +|+..|.+++...+.. ..++..+|.+|...|++++|+.+|++++ ...|.+. .++
T Consensus 131 ~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 131 YE-----------YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HH-----------HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 55 8999999998765543 4578889999999999999999999998 4566543 688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhh
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQVHPS-----CPGAIRLGIGLCRYKLGQLGKA-RQAFQRALQL 226 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~-----~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 226 (1093)
+.+|.++...|+|++|+.+|++++...+. ....+++.+|.++..+|++++| ...|++++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999877532 1356788899999999999999 7778888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-11 Score=116.66 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=109.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCH
Q 001357 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1093)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (1093)
.+.++.+++.+|.++...|++++|+.+|+++++..| .++.+|+++|.+|..+|++++|+..|++++.. .+.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 79 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-----ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYS 79 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 455778899999999999999999999999999998 78999999999999999999999999999998 67789
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 794 (1093)
.+++.+|.+|+..|++++|+.+|++++.++|++...+++.++..
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999877777753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-13 Score=157.02 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=134.7
Q ss_pred HHHHHHHHHHH----HHhcCCCChhhHHHHHHHH------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 109 HFILATQYYNK----ASRIDMHEPSTWVGKGQLL------------LAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172 (1093)
Q Consensus 109 ~~~~A~~~~~~----a~~~~p~~~~~~~~~a~~~------------~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 172 (1093)
.++.|+..+.+ ++.++|.. +|...|... ...+++++|+..|+.++...|....++..+|.++
T Consensus 201 ~~e~al~~~~~ge~~~l~i~P~~--ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~ 278 (457)
T 1kt0_A 201 GIDKALEKMQREEQCILYLGPRY--GFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVY 278 (457)
T ss_dssp HHHHHHTTCCBTCEEEEEECGGG--TTCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECccc--ccCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHHH
Confidence 45567776666 66666643 333233221 1345667788888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCh--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCP--------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
+..|+|.+|+..|.+++..+|.+. ..+++.+|.||.++|++++|+..|.+++.++|+++.+++.+|
T Consensus 279 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 888999999999999888888874 467888888888889999999999988888888888888888
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1093)
.++...|+ +++|+..|++++.++|.+..++..++.++...+++.++..
T Consensus 359 ~a~~~~g~---~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 359 EAQLLMNE---FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHTTC---HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 8888888888888888888888888888888777776554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=106.60 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=103.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
.+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+ ..+++.+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999999988 7788999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+..+|++++|+..|.+++..+|++..++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999999998888887664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-10 Score=123.43 Aligned_cols=182 Identities=11% Similarity=0.045 Sum_probs=146.8
Q ss_pred cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh------HHHHhhhhhhcccchHHHHHHHHHhhhcCCCC-C
Q 001357 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDGK-D 627 (1093)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~-d 627 (1093)
.|.....+...+..+...|++++|+..+.+++...+.... .++.+|.++...|++++|+..|.+++...+.. +
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 4455666777888889999999999999999998876543 45678888899999999999999998754331 1
Q ss_pred ----hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHhcCCchhHHH
Q 001357 628 ----SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI---VQHTSNL----YAANGAGVVLAEKGQFDVSKD 696 (1093)
Q Consensus 628 ----~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~p~~~----~a~~~la~~~~~~g~~~~A~~ 696 (1093)
..++..+|.+ |... |++++|+.+|++++ ...|.+. .+++++|.+|...|++++|+.
T Consensus 151 ~~~~~~~~~~lg~~-y~~~------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 151 VYQNLYIENAIANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp TTHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 3478889999 9888 99999999999999 5566632 688999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCCchhHHHHHHHHHHHhcCHHHH-HHHHHHHHHhhcCCCC
Q 001357 697 LFTQVQEAASGS-VFVQMPDVWINLAHVYFAQGNFALA-MKMYQNCLRKFYYNTD 749 (1093)
Q Consensus 697 ~~~~~~~~~p~~-~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 749 (1093)
+|+++++..+.. .....+.+++++|.+|..+|++++| ..+|++++..+..-.+
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 999999886421 1112478899999999999999999 7889999887644443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-11 Score=111.09 Aligned_cols=122 Identities=17% Similarity=0.263 Sum_probs=112.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
.|.++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++..+|.+..++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 35678899999999999999999999999999999998 77899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQ 283 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~ 283 (1093)
|.++...|+ +++|+..|.+++..+|.+..++..++.++...|+
T Consensus 91 a~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKD---YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999 9999999999999999999888888888876653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=108.59 Aligned_cols=122 Identities=15% Similarity=0.189 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 159 (1093)
+....++..+|..|...|+.. +|+..|.+++..+|.++.+++.+|.++...|++++|+.+|.+++..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----------~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFE-----------AAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhhhHHHHHHHHHHHHccCHH-----------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc
Confidence 356778889999999888877 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
.++.+++.+|.++...|++++|+.+|++++...|.+ ..++..+|.++..+|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999998 77889999999998875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-12 Score=145.48 Aligned_cols=147 Identities=16% Similarity=0.233 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHc
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNR 175 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~ 175 (1093)
.+|+..|..++..+|.....+..+|..++..|+|++|+..|.+++..+|.+ ..+++.+|.+++.+
T Consensus 251 ~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367778888888888899999999999999999999999999999999998 79999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME 255 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~ 255 (1093)
|+|++|+..|.+++.++|++ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++ +.++..
T Consensus 331 g~~~~A~~~~~~al~~~p~~-~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~---~~~a~~ 406 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSAN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE---HNERDR 406 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH---HHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHH
Confidence 99999999999999999999 78899999999999999999999999999999999999999999999988 665553
Q ss_pred -HHHHHH
Q 001357 256 -KMQRAF 261 (1093)
Q Consensus 256 -~~~~al 261 (1093)
.|.+++
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 344333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.3e-11 Score=115.47 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA------------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
+..+..+|..++..|+|++|+..|.+++.. +|.++.+++.+|.+++..|+|++|+..|.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 457888999999999999999999999998 66677889999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhh
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQAN 245 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~~ 245 (1093)
.++|.+ ..+++.+|.++..+|++++|+..|.+++.++|++. .+...++.+.....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999988 77788899999999999999999999999999888 55666666555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=113.42 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHh----
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD-------NVP-----ALLGQACVEFNRGRYSDSLEFYKRALQV---- 191 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----a~~~la~~~~~~g~~~~Al~~~~~al~~---- 191 (1093)
...++.+|..++..|+|++|+..|++++..+|+ +.. +|..+|.++..+|+|++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 346778889999999999999999999999888 433 7777777777788888888887777777
Q ss_pred ---CCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 192 ---HPSCPGAIR----LGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 192 ---~p~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
+|++ ..+| +++|.++..+|++++|+..|+++++++|++....
T Consensus 91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 91 GELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 7766 5566 7777777777777777777777777777654443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-10 Score=109.90 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=107.6
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
..+|.+...++.+|..++..|++++|+.+|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|.+ ..
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HH
Confidence 3457788899999999999999999999999999999987 8899999999999999999999999999999988 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+++.+|.++..+|++++|+..|.+++.++|++..++..++.+.
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8899999999999999999999999999999988888777664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-10 Score=106.32 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGI 203 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~l 203 (1093)
..++.+|.+++..|++++|+..|++++..+|+++ .+++.+|.+++..|++++|+..|++++..+|++. +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4678899999999999999999999999999887 7999999999999999999999999999998873 5568889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
|.++..+|++++|+..|++++...|++..+...+..+...
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999988776666555433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-10 Score=103.66 Aligned_cols=121 Identities=29% Similarity=0.457 Sum_probs=107.9
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 158 DRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 158 ~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
+|.. ..+++.+|.++...|++++|+.+|.+++...|.+ ..+++.+|.++...|++++|+..|.+++..+|.+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 4555 7789999999999999999999999999999988 6788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
++.++...|+ +.+|+..|.+++..+|.++.++..++.++...|
T Consensus 83 la~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGD---YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999998 999999999999999999988888888776543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-10 Score=124.86 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=117.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChh------HHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CC----hHHHHH
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLELKNDDWVKAKETFRAASDATDG-KD----SYATLS 633 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d----~~~~~~ 633 (1093)
.+..+...|++++|..++++++...+..+. .+..+|.++...+++++|+..|.+++...+. .+ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 355566667777777777777766655544 2234677777777888888888888774322 22 225677
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-------HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (1093)
+|.+ |... |++++|+.+|++++.. .|....+++++|.+|...|++++|+.+++++++..+
T Consensus 161 lg~~-y~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 161 IANI-YAEN------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHH-HHHT------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHc------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 8888 8887 8888888888888842 122344677888888888888888888888887764
Q ss_pred CCC-CCCchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhc
Q 001357 707 GSV-FVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFY 745 (1093)
Q Consensus 707 ~~~-~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~ 745 (1093)
... ....+.+++++|.+|..+|+ +++|+.+|++++..+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 321 11236778888888888884 6888888888887653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=108.94 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=104.5
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 156 EADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 156 ~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
..+|.++..++.+|.+++..|+|++|+..|.+++..+|.+ ..+++.+|.++..+|+++.|+..|.+++.++|+++.+++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH
Confidence 3467889999999999999999999999999999999998 788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC-----cHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPY-----CAMALNYLANH 277 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~-----~~~~~~~la~~ 277 (1093)
.+|.++...|+ +.+|+..|.+++.++|. +..+...+..+
T Consensus 82 ~l~~~~~~~~~---~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 82 FLGQCQLEMES---YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999887 45454444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=106.50 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
.++.+|.+++..|++++|+..|++++..+|++ ..+++.+|.++..+|++++|+..|++++.++|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999 77899999999999999999999999999999999999999999999
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
.|+ +.+|+..|++++..+|.+.
T Consensus 98 ~g~---~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHN---ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHH---HHHHHHHHHHHHC------
T ss_pred cCC---HHHHHHHHHHHHHhCcCCC
Confidence 998 9999999999999998765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=105.50 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=100.3
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--ChHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS--CPGAIR 200 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~--~~~~~~ 200 (1093)
++|.++.+++.+|.+++..|++++|+..|++++..+|.+..+++.+|.++...|++++|+..|++++...|. . ..++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~ 79 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVW 79 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 7 7789
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 001357 201 LGIGLCRYKL-GQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 201 ~~la~~~~~~-g~~~~A~~~~~~al~~~p~~ 230 (1093)
+.+|.++..+ |++++|+..|.+++...|.+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 9999999999 99999999999999998875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=125.29 Aligned_cols=170 Identities=15% Similarity=0.092 Sum_probs=103.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc---hhhHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF---IFPYYG 347 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~ 347 (1093)
.+..++..|++++|..++..++......+.. ...+..+|.++...|++++|+.+|.+++......++. ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3455566666666666666666543222221 1233346777777777777777777777633222222 335677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI---Y----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFI 414 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~------~~~~~ 414 (1093)
+|.+|...|++++|+.+|++++.. . +....+++++|.+|...|++++|+.++++++.+.+.. ..+++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777777777777777777742 1 1123466777777777777777777777776654222 56666
Q ss_pred HHHHHH-hcC-CHHHHHHHHHHHHHHHHhcC
Q 001357 415 DLGELL-ISS-DTGAALDAFKTARTLLKKAG 443 (1093)
Q Consensus 415 ~la~~~-~~~-~~~~A~~~~~~a~~~~~~~~ 443 (1093)
.+|.++ ..| .+++|+.+|++++.+....+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 777766 666 35677777777766665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-09 Score=126.45 Aligned_cols=207 Identities=9% Similarity=0.104 Sum_probs=151.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----------------CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
+..|..+...|+|++|+..|..+++..|.. ..++..+|.+|...|++++|+.++.+++...+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544332 135677888888888888888888888776443
Q ss_pred C------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001357 409 D------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1093)
Q Consensus 409 ~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 480 (1093)
. ..+...++.++ ..|+++.|+.++..++...+....... ..++.++|.+|...|++.+|..++.+++....
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~- 166 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK- 166 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH-
Confidence 2 23445566777 788999999999999988877544333 67889999999999999999999999876421
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC---C
Q 001357 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---D 557 (1093)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~ 557 (1093)
.....+....++..++.+|...|++.+|..+|++++...+ .
T Consensus 167 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 167 ------------------------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp ------------------------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred ------------------------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 0113456778899999999999999999999999887542 2
Q ss_pred ----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 001357 558 ----YVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 558 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (1093)
....+..+|.++...+++.+|..+|..++...
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 14567778888888999999999999988754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.2e-10 Score=130.89 Aligned_cols=171 Identities=12% Similarity=0.017 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-
Q 001357 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR----------YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG- 211 (1093)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~----------~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g- 211 (1093)
..++|+..+.+++..+|++..+|..++.++...|+ +++++..+.+++..+|.+ ..+|+..+.++..+|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-YGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccc
Confidence 34788999999999999999999999999999998 999999999999999999 788999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh-hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------
Q 001357 212 -QLGKARQAFQRALQLDPENVEALVALAVMDLQAN-EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT-------- 281 (1093)
Q Consensus 212 -~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~-~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-------- 281 (1093)
++++|+..+.++++.+|.|..+|...+.+....+ . +++++.++.++++.+|.+..+|+..+.++...
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~---~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA---PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC---HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999999999999999999999988 6 89999999999999999999999999988775
Q ss_pred ------CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC
Q 001357 282 ------GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1093)
Q Consensus 282 ------g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1093)
+.+++++.++.+++... |.+..+|+.++.++...++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCC
Confidence 33455555555555433 4444555555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=107.22 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 159 (1093)
.+....+..||..|+..|++. +|+..|++++.++|.++.+|..+|.+|+..|++++|+..|++++.++|
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~-----------~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFE-----------KAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 355667788899998888776 999999999999999999999999999999999999999999999887
Q ss_pred CC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 160 DN-------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 160 ~~-------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
++ ..++..+|.++...|++++|+..|++++...|+.
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 65 3578899999999999999999999999998864
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=112.75 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQV------------------HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~------------------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+..+..+|..++..|+|.+|+..|.+++.. +|.. ..+++.+|.||..+|++++|+..|.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-IPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 567899999999999999999999999998 4544 578999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH
Q 001357 224 LQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA-MALNYLANHFFF 280 (1093)
Q Consensus 224 l~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~ 280 (1093)
+.++|+++.+++.+|.++...|+ +++|+..|.+++.++|.++ .+...+..+...
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~---~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWK---LDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhc---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999998 556666555433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=116.17 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=123.7
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHh------hCCCCHHH
Q 001357 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV------QHTSNLYA 677 (1093)
Q Consensus 604 ~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~------~~p~~~~a 677 (1093)
+..|++++|...+..+.. .|.....++..+|.+ |... |++++|+.+|.+++. ..|....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 68 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYV-YAFM------------DRFDEARASFQALQQQAQKSGDHTAEHRA 68 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHH-HHHh------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 345666666664333322 233345566666666 6666 777777777777766 33445678
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC-CC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV-FV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (1093)
+..+|.++...|++++|+..|.+++....... .+ ....++.++|.++...|++++|+..|++++...+...+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 88999999999999999999999998843211 11 23567899999999999999999999999987655555 44
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAM 794 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 794 (1093)
++..+|.++...|++++|..+|++++.+...... .+..+.++
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 190 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED-SEAVNELM 190 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 5789999999999999999999999987653221 34444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=108.33 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------Ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-------CP----GAIRLGIGLCRYKLGQLGKARQAFQRALQL---- 226 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-------~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 226 (1093)
...++.+|..++..|+|++|+..|++++..+|+ +. ..+|.++|.++..+|++++|+..|.+++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456889999999999999999999999999999 31 238999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 227 ---DPENVEAL----VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 227 ---~p~~~~a~----~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
+|++..+| +.+|.++...|+ +++|+..|+++++++|.+..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999 999999999999999877643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=9.5e-10 Score=100.30 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
.+..++.+|.+++..|++++|+..|++++...|.+ ..+++.+|.++...|++++|+..|.+++..+|.++.++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45778899999999999999999999999999988 77889999999999999999999999999999999999999999
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
+...|+ +.+|+..|.+++..+|.++.++..++.+.
T Consensus 82 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNR---FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTC---HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999998 99999999999999999988887776653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.2e-09 Score=122.69 Aligned_cols=204 Identities=11% Similarity=0.080 Sum_probs=145.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
.|.+.+..|..+...|+|++|+..|..+++..|... .++..+|.+|...|++++|+.+|.+++
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888889999999999999999998877542 357888999999999999999999888
Q ss_pred HhCCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001357 190 QVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP------ENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1093)
Q Consensus 190 ~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1093)
...+... ..++..++.++...|+++.|+..+..++...+ ....++..+|.++...|+ +.+|+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~ 159 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---YKDSLALIN 159 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC---hHHHHHHHH
Confidence 7765441 23455677777788888888888888876532 235567777888887777 777887777
Q ss_pred HHHHh------CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCC----chHHHHHHHHHHHhcCCHHHHHHHH
Q 001357 259 RAFEI------YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT----KSHSYYNLARSYHSKGDYEKAGLYY 328 (1093)
Q Consensus 259 ~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~ 328 (1093)
.++.. .+....++..++.+|...|++.+|..++.+++......+. ....+..+|..+...|+|.+|..+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 77654 2334556666677777777777777777766644322221 2345566666667777777777777
Q ss_pred HHHHH
Q 001357 329 MASVK 333 (1093)
Q Consensus 329 ~~al~ 333 (1093)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-10 Score=113.57 Aligned_cols=158 Identities=15% Similarity=0.183 Sum_probs=92.8
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcC
Q 001357 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI------YPDNCETLKALGHIYVQLG 390 (1093)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g 390 (1093)
..|++++|...+..... .+.....++..+|.++...|++++|+.+|.+++.. .|....++..+|.++...|
T Consensus 4 ~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA---HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHHT---STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34555555553333321 22244455555666666666666666666655552 2233456666666666666
Q ss_pred CHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 001357 391 QIEKAQELLRKAAKI---DPR----DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~---~p~----~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~ 461 (1093)
++++|+.++.+++.+ .++ ...++..+|.++ ..|++++|+.++.+++.+.+..+.... ..++.++|.++...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 666666666666655 232 234566666666 667777777777777666554332211 34567788888888
Q ss_pred CCHHHHHHHHHHHHhc
Q 001357 462 GEFESAHQSFKDALGD 477 (1093)
Q Consensus 462 g~~~~A~~~~~~al~~ 477 (1093)
|++++|..+|.+++..
T Consensus 161 g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDI 176 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8888888888888774
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=108.03 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=77.9
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001357 104 REKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV----------EQASSAFKIVLEADRDNVPALLGQACVEF 173 (1093)
Q Consensus 104 ~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~la~~~~ 173 (1093)
..|.+.|++|+..|.+++.++|.++.+|+.+|.++...|++ ++|+..|++++.++|++..+|+.+|.+|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999998875 47888888888888888888888887777
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
..|.+ .|.. +. ..|++++|+.+|+++++++|++..+
T Consensus 92 ~lg~l-------------~P~~-~~----------a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 92 SFAFL-------------TPDE-TE----------AKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHH-------------CCCH-HH----------HHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred Hhccc-------------Ccch-hh----------hhccHHHHHHHHHHHHHhCCCCHHH
Confidence 76532 2222 10 0145666666666666666666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.5e-10 Score=103.21 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=103.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIR 200 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~ 200 (1093)
.+..++.+|.+++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+.+|.+++...|... ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999877541 5678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1093)
+.+|.++...|++++|+..|++++...| +...+..++.+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 6777777777665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=101.60 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---HHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN---VEALVAL 237 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 237 (1093)
.+++.+|.+++..|+|++|+..|++++..+|++.. .+++.+|.++...|++++|+..|.+++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 35788999999999999999999999999998832 688999999999999999999999999999999 8899999
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
|.++...|+ +++|+..|++++..+|+++.+......+..
T Consensus 83 a~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 83 GLSQYGEGK---NTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 999999999 999999999999999999877665554443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-11 Score=129.96 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=78.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----------------PALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
.....+..+|..++..|+|++|+..|.+++...|.+. .+++.+|.++...|+|++|+..|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788899999999999999999999999998876 36777777777777777777777777
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhHHHHHHHHHHHHHhCCCc
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
+..+|.+ ..+++.+|.+|..+|++++|+..|++++.++|++..++..++.+.... +. ...+...|.+++...|.+
T Consensus 257 l~~~p~~-~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~---~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 257 LTEEEKN-PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL---YQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCC
Confidence 7777777 566777777777777777777777777777777777777777664332 22 566666777777776655
Q ss_pred H
Q 001357 268 A 268 (1093)
Q Consensus 268 ~ 268 (1093)
+
T Consensus 333 ~ 333 (338)
T 2if4_A 333 G 333 (338)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=101.54 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCH
Q 001357 671 HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1093)
Q Consensus 671 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (1093)
+|++..++..+|.++...|++++|+..|+++++..| .++.+++++|.++...|++++|+..|++++...+...++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 76 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence 688899999999999999999999999999999988 678999999999999999999999999999984332279
Q ss_pred HHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCCCCc
Q 001357 751 QILLYLARTHYEA-EQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 751 ~~l~~la~~~~~~-g~~~~A~~~~~~al~~~P~~~ 784 (1093)
.++..+|.++... |++++|.++|++++...|.++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999999999 999999999999999999875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=103.69 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=109.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
..|.+...++.+|.+++..|++.+|+.+|++++...|++ ...+++.+|.++...|++++|+..|.+++..+|.+..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 357789999999999999999999999999999999975 256789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
+.+|.++...|+ +.+|+..|.+++.++|.+..++..++.+.
T Consensus 103 ~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGR---LDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999 99999999999999999998887776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-11 Score=138.94 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=116.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.+ ..+++.+|.+|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 84 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASN 84 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 44567778888999999999999999999999999999999999999999999999999999999998 77889999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHhhhHHhHHHHHHHHH-----------HHHHhCCCc
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVM--DLQANEAAGIRKGMEKMQ-----------RAFEIYPYC 267 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--~~~~~~~~~~~~Al~~~~-----------~al~~~p~~ 267 (1093)
..+|++++|+..|+++++++|++..++..++.+ +...|+ +++|+..+. +++.+.|..
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA---FERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH---HCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH---HHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999998888887 777777 999999988 666666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-11 Score=141.63 Aligned_cols=125 Identities=14% Similarity=0.225 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
++|++|+..|++++..+|.++.+|+.+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++
T Consensus 20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 99 (477)
T 1wao_1 20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYET 99 (477)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCcHHH
Q 001357 188 ALQVHPSCPGAIRLGIGLC--RYKLGQLGKARQAFQ-----------RALQLDPENVEA 233 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~~~~a 233 (1093)
++..+|++ ..++..++.+ +...|++++|+..++ +++.++|+...+
T Consensus 100 al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~ 157 (477)
T 1wao_1 100 VVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGP 157 (477)
T ss_dssp HHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSC
T ss_pred HHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccc
Confidence 99999998 5677888888 889999999999999 888887775444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2e-09 Score=100.28 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC-CC--
Q 001357 673 SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD-- 749 (1093)
Q Consensus 673 ~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~-- 749 (1093)
..+.+++.+|.++...|++++|+.+|.+++...| .++.+++++|.+|...|++++|+.+|++++...+.. .+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3456788999999999999999999999999987 678999999999999999999999999999987643 33
Q ss_pred --HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHH
Q 001357 750 --AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFS 798 (1093)
Q Consensus 750 --~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~ 798 (1093)
+.+++.+|.++...|++++|..+|++++...| ++.+...++.++....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999 6788888887755443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=127.03 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCCh-----------------hhHHHHHHHHHHcC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP-----------------STWVGKGQLLLAKG 142 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~-----------------~~~~~~a~~~~~~g 142 (1093)
+.....+..+|..|+..|++. +|+..|.+++...|.+. .+|+.+|.+|+..|
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~-----------~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLE-----------EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCH-----------HHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345666777888887777766 99999999999999877 48999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 001357 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC-RYKLGQLGKARQAFQ 221 (1093)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~-~~~~g~~~~A~~~~~ 221 (1093)
+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++.++|++ ..++..++.+ ....+..+.+...|.
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 6778888888 445677888999999
Q ss_pred HHHhhCCCcHH
Q 001357 222 RALQLDPENVE 232 (1093)
Q Consensus 222 ~al~~~p~~~~ 232 (1093)
+++...|.+..
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999997653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=120.90 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLE----------------ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
..+..+|..++..|+|++|+..|++++. .+|.+..++..+|.+++..|+|++|+.+|++++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577889999999999999999999988 566667778888888888888888888888888888
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
|.+ ..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++
T Consensus 304 p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 304 PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 877 66777888888888888888888888888888888777777777777666
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-10 Score=104.61 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=75.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
.+.|++|+..|++++..+|+++.+|+.+|.++...++++.+..... .+++|+..|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~~l 69 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHHHH
Confidence 3456777777777777777777777777777766665542222110 145666666
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 221 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
+++++++|++..+|+.+|.+|...|. .+++++|+.+|+++++++|++......+..+
T Consensus 70 e~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 70 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666666666666541 1349999999999999999998777766543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-10 Score=103.02 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001357 108 EHFILATQYYNKASRI---DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
|++.+|+.+|++++.. +|.++.+++.+|.+++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555788888888887 5777778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCC
Q 001357 185 YKRALQVHPSC 195 (1093)
Q Consensus 185 ~~~al~~~p~~ 195 (1093)
|++++...|.+
T Consensus 84 ~~~al~~~p~~ 94 (117)
T 3k9i_A 84 LLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHhCCCc
Confidence 88888888777
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=103.13 Aligned_cols=95 Identities=15% Similarity=0.236 Sum_probs=78.5
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001357 140 AKGEVEQASSAFKIVLEA---DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1093)
..|++++|+..|++++.. +|+++.+++.+|.++...|+|++|+..|++++..+|++ +.+++.+|.++..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 367888899999999888 58888889999999999999999999999999999988 77788899999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHH
Q 001357 217 RQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~ 235 (1093)
+..|++++...|+++....
T Consensus 81 ~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999988888876543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-09 Score=102.90 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=118.5
Q ss_pred HHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 001357 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------LYAANGAGVVLAEKGQFDVSKDLFTQVQ 702 (1093)
Q Consensus 629 ~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~a~~~la~~~~~~g~~~~A~~~~~~~~ 702 (1093)
.++..+|.+ |... |++++|+.+|.+++...|.. ..++..+|.++...|++++|+.+|++++
T Consensus 10 ~~~~~l~~~-~~~~------------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNT-HYLL------------GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHh------------cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456678888 8887 99999999999999876542 2478899999999999999999999999
Q ss_pred HHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001357 703 EAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1093)
Q Consensus 703 ~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al 777 (1093)
...+.... .....++.++|.++...|++++|+.+|++++...+...+ +.++..+|.++...|++++|..++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 98753211 123678899999999999999999999999988654444 5678899999999999999999999999
Q ss_pred HhCCC
Q 001357 778 HLAPS 782 (1093)
Q Consensus 778 ~~~P~ 782 (1093)
.+...
T Consensus 157 ~~~~~ 161 (164)
T 3ro3_A 157 EISRE 161 (164)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 87653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-09 Score=118.27 Aligned_cols=124 Identities=21% Similarity=0.215 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----------------hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQ----------------VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~----------------~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
...+..+|..++..|+|++|+..|++++. ..|.. ..+++.+|.|+..+|++++|+..|+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-LSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999998 55555 67889999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHH
Q 001357 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQ 289 (1093)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 289 (1093)
++|+++.+++.+|.++...|+ +++|+..|+++++++|.+..++..++.++...+++.++..
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~---~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKE---YDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999998888888877766554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-09 Score=101.69 Aligned_cols=136 Identities=17% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP------STWVGKGQLLLAKGEVEQASSAFKIV 154 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~------~~~~~~a~~~~~~g~~~~A~~~~~~a 154 (1093)
....++..+|.+|...|+.. +|+..|.+++...+... .++..+|.++...|++++|+..|+++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~-----------~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFR-----------DAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556677777777776655 66666666665544322 35666777777777777777777777
Q ss_pred HHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 155 LEADRDN------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 155 l~~~p~~------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+...+.. ..++..+|.++...|++++|+.++++++...+.. ...++..+|.++...|++++|+..|.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6654322 4456677777777777777777777776553211 2344566666777777777777777666
Q ss_pred HhhC
Q 001357 224 LQLD 227 (1093)
Q Consensus 224 l~~~ 227 (1093)
+.+.
T Consensus 156 ~~~~ 159 (164)
T 3ro3_A 156 LEIS 159 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=91.33 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 001357 659 KAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1093)
Q Consensus 659 ~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 738 (1093)
.|+..|++++..+|+++.+++.+|.++...|++++|+..|++++...| ..+.+|+++|.+|...|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467778888888888888888888888888888888888888888877 667788888888888888888888888
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhc
Q 001357 739 NCLRKFYYNTDAQILLYLARTHYEAE 764 (1093)
Q Consensus 739 ~al~~~~~~~~~~~l~~la~~~~~~g 764 (1093)
+++...+...+...+..+...+...+
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHhc
Confidence 88877665555555555544444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.6e-08 Score=89.59 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.|+..|.+++..+|.++.+++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred CCC
Q 001357 192 HPS 194 (1093)
Q Consensus 192 ~p~ 194 (1093)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.1e-08 Score=83.49 Aligned_cols=83 Identities=22% Similarity=0.503 Sum_probs=49.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
++.+++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+ ..++..+|.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Confidence 344555666666666666666666666666666666666666666666666666666666666666655 4455555555
Q ss_pred HHHc
Q 001357 207 RYKL 210 (1093)
Q Consensus 207 ~~~~ 210 (1093)
+..+
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-09 Score=93.52 Aligned_cols=94 Identities=13% Similarity=0.239 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----hHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----PGAIRLG 202 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~ 202 (1093)
+..++.+|.+++..|++++|+..|++++..+|.++.+++.+|.++...|++++|+..|++++..+|++ ...+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777765 1344566
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 001357 203 IGLCRYKLGQLGKARQAFQ 221 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~ 221 (1093)
+|.++..+|+++.|+..|+
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 6777766666665555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.5e-08 Score=82.26 Aligned_cols=84 Identities=27% Similarity=0.519 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.++.+++.+|.+++..|++++|+..|++++..+|.+ ..+++.+|.++...|++++|+..|++++.++|++..++..++.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356778888888888888888888888888888887 6678888888888888888888888888888888888888887
Q ss_pred HHHHh
Q 001357 240 MDLQA 244 (1093)
Q Consensus 240 ~~~~~ 244 (1093)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-07 Score=104.09 Aligned_cols=178 Identities=13% Similarity=0.078 Sum_probs=147.2
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC-
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS- 673 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~- 673 (1093)
++..+...+.+.|++++|..+|..+...+-.++..++..|..+ |....... .....+..+.|..+|..+....-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~-c~~~~~~~---~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV-CSLAEAAT---ESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH-HTTCCCCS---SSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhCCchh---hhhhcchHHHHHHHHHHHHHhCCCC
Confidence 4556677889999999999999999988777788888877766 54331110 001127899999999999887644
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 753 (1093)
|..+++.+...|++.|++++|..+|.++....- ..+..+|..+-..|.+.|++++|..+|+.+... .-.++..++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI----QPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 888999999999999999999999999988652 136788999999999999999999999999875 467789999
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 754 LYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 754 ~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
..|..+|.+.|+.++|..+|+++....-
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999887543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-08 Score=91.98 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN------VEAL 234 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~ 234 (1093)
++.+++.+|.+++..|+|++|+..|++++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++|++ ..++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45678888999999999999999999999999988 7778889999999999999999999999999988 7778
Q ss_pred HHHHHHHHHhhh
Q 001357 235 VALAVMDLQANE 246 (1093)
Q Consensus 235 ~~la~~~~~~~~ 246 (1093)
+.++.++...|.
T Consensus 82 ~~~~~~~~~~~~ 93 (111)
T 2l6j_A 82 YRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 888887777765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-06 Score=101.29 Aligned_cols=184 Identities=11% Similarity=0.002 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChhHHHHhhhhhhcc---------cchHHHHHHHHHhhhcCCCCChHH
Q 001357 561 AYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKN---------DDWVKAKETFRAASDATDGKDSYA 630 (1093)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~~~~d~~~ 630 (1093)
.+..+...+.+.|++++|+.+|+++...+ +.+..+|..+..++... +..+.|..+|..+....-.++..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555677778888888888888887764 23455666666655543 457899999999999887889999
Q ss_pred HHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC
Q 001357 631 TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (1093)
Q Consensus 631 ~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 709 (1093)
+..|... |... |++++|..+|..+....-. +..+++.+...|++.|++++|..+|..+.+..-
T Consensus 108 yn~lI~~-~~~~------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~--- 171 (501)
T 4g26_A 108 FTNGARL-AVAK------------DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV--- 171 (501)
T ss_dssp HHHHHHH-HHHH------------TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHH-HHhc------------CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC---
Confidence 9999999 9999 9999999999999887533 788999999999999999999999999998753
Q ss_pred CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 001357 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1093)
Q Consensus 710 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~ 762 (1093)
..+..+|..+..+|.+.|++++|..+|+++-... ..++..++..+-..+..
T Consensus 172 -~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 -VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred -CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 2467899999999999999999999999987653 45566666655555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.3e-08 Score=84.94 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=65.4
Q ss_pred hCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC
Q 001357 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD 749 (1093)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 749 (1093)
.+|+++.+++.+|.++...|++++|+..|+++++..| .++.+|+++|.+|...|++++|+..|++++...+...+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 3678888888888888888888888888888888887 66778888888888888888888888888877655555
Q ss_pred HHHHHHHHHHHHhh
Q 001357 750 AQILLYLARTHYEA 763 (1093)
Q Consensus 750 ~~~l~~la~~~~~~ 763 (1093)
......+...+...
T Consensus 77 ~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 77 QKDLSELQDAKLKA 90 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHc
Confidence 55555555444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-08 Score=84.96 Aligned_cols=71 Identities=21% Similarity=0.252 Sum_probs=51.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
+|.++.+|+.+|.+++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.+.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 57777777777777777777777777777777777777777777777777777777777777777766543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-07 Score=85.29 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~ 730 (1093)
+++++|+.+|+++.+..+.. +. +|.+|...+.+++|+.+|+++.+.. ++.++++||.+|.. .+++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHcCCCCCccH
Confidence 88999999999999987444 44 9999999999999999999999863 78999999999998 8999
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001357 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1093)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la 791 (1093)
.+|+.+|+++... .++..++.||.+|.. .+++.+|+.+|+++.+.. ++...++|+
T Consensus 78 ~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 78 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 9999999999975 568999999999999 899999999999999884 455555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=83.81 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
+.+|.+++..|++++|+..|++++..+|.++. +++.+|.++...|++++|+..|++++..+|++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 44566666666666666666666666666666 66666666666666666666666666666665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=92.79 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=109.3
Q ss_pred HHhcCCCChhhH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-------HHHHH-HHH
Q 001357 120 ASRIDMHEPSTW--VGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRY-------SDSLE-FYK 186 (1093)
Q Consensus 120 a~~~~p~~~~~~--~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~-------~~Al~-~~~ 186 (1093)
+...-|.++.+| +.+|..++..+. +.+|+.+|+++++.+|+++.++..++.++.....+ ..++. .+.
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 334457766655 567888887765 58999999999999999999999888888632111 11111 111
Q ss_pred H--HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001357 187 R--ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 187 ~--al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1093)
. ++...|.. +.++..++..++..|+++.|+..+++++.++| +..++..+|.++...|+ +++|+..|.+++.++
T Consensus 266 a~~a~~~~~~~-a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 266 NIVTLPELNNL-SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGM---NREAADAYLTAFNLR 340 (372)
T ss_dssp HHHTCGGGTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHhcccCCcC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 1 12345666 67778888888888999999999999999997 46788889999999998 999999999999999
Q ss_pred CCcH
Q 001357 265 PYCA 268 (1093)
Q Consensus 265 p~~~ 268 (1093)
|..+
T Consensus 341 P~~~ 344 (372)
T 3ly7_A 341 PGAN 344 (372)
T ss_dssp CSHH
T ss_pred CCcC
Confidence 9876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-06 Score=80.93 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al 182 (1093)
.+++.+|+.+|.++.... ++.+. +|.+|...+.+++|+.+|+++... .++.+++.+|.+|.. .+++.+|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 467889999999998876 44444 999999999999999999999886 589999999999998 89999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
.+|+++... .+ +..++.+|.+|.. .+++++|+.+|+++.+. .++.+...|+
T Consensus 82 ~~~~~Aa~~--g~-~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 82 QYYSKACGL--ND-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHT--TC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHcC--CC-HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999999886 34 6678899999999 89999999999999886 3455554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=81.50 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA-IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
.+.+|.+++..|++++|+..|++++..+|.+ .. +++.+|.++..+|++++|+..|++++.++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence 3568889999999999999999999999999 66 89999999999999999999999999999999887743
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
+. +.+++..|.++...+|.+
T Consensus 75 -~~---~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KM---VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HH---HHHHHHHHCCTTHHHHCC
T ss_pred -HH---HHHHHHHHHHHhccCccc
Confidence 22 777888888887777654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-05 Score=80.36 Aligned_cols=106 Identities=9% Similarity=-0.002 Sum_probs=91.5
Q ss_pred CCCchHHHHHHHHHHHHh---c--C------ChHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHc-----CCHHHHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQ---I--H------DTVAASVLYRLILFKYQD--YVDAYLRLAAIAKAR-----NNLQLSIEL 581 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~ 581 (1093)
..|.++..++..|.++.. . | ....|...++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456788888887776533 1 3 357888999999999999 566999999999995 999999999
Q ss_pred HHHHHHHcCCC-hhHHHHhhhhhhcc-cchHHHHHHHHHhhhcCCC
Q 001357 582 VNEALKVNGKY-PNALSMLGDLELKN-DDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 582 ~~~al~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~~~ 625 (1093)
|++++.++|+. ..+++.+|..++.. |+++.|...+++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 99999999975 99999999999885 9999999999999998776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.3e-06 Score=91.96 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH-------HHHH-HHHHH--HHHhCCCCHHHHHHHHHHHHHcCC
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV-------EQAS-SAFKI--VLEADRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~-------~~A~-~~~~~--al~~~p~~~~a~~~la~~~~~~g~ 177 (1093)
+.+.+|+.+|++++.++|+++.++..++.+|+....+ -.++ ..+.. ++..+|.++.++..++..+...|+
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 4567999999999999999999999988888632111 1111 12222 224568999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
+++|+..+++++.++|+ ...+..+|.++...|++++|+..|.+++.++|....
T Consensus 293 ~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999975 456788999999999999999999999999997753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=99.74 Aligned_cols=125 Identities=13% Similarity=0.044 Sum_probs=58.4
Q ss_pred HHHcCChHHHHHHHHHHHhc-----cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHHH
Q 001357 278 FFFTGQHFLVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYG 347 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~ 347 (1093)
+..+|+|++|+.++++++.. .+..|....++.++|.+|..+|+|++|+.++++++... +..|.....+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33455555555555555532 22233344455555555555555555555555554321 233344444555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
||.+|...|++++|+.+|++++.+ .|++ ..+...++.++..++.+.+|...|.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555443 1222 233344444444444444444444444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=74.57 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=59.4
Q ss_pred CCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 124 DMHEPSTWVGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
+|.++..+..+|.+++..++ .++|...|++++..+|+++.+++.+|..++..|+|.+|+.++++++..+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788888888888876655 6888888888888888888888888888888888888888888888888774
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.4e-05 Score=78.42 Aligned_cols=189 Identities=14% Similarity=0.051 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHHHHcCCChhHHHHhhh
Q 001357 543 AASVLYRLILFKYQDYVDAYLRLAAIAKARN---------------------NLQLSIELVNEALKVNGKYPNALSMLGD 601 (1093)
Q Consensus 543 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~l~~ 601 (1093)
-.+.+++.++..+|++.......+..|..-. ++..|..+|.++.... +--
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~---------~ra 120 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA---------LSS 120 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 3456777778889988665555554443221 2334555555544321 111
Q ss_pred hhhcccchHHHH-----HHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC--C
Q 001357 602 LELKNDDWVKAK-----ETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--N 674 (1093)
Q Consensus 602 ~~~~~g~~~~A~-----~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~ 674 (1093)
+......+.+++ ..+..++......+..+++..|.+ +...+...+.. -...+....|...++++++++|+ +
T Consensus 121 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~-~ss~a~~~~gg-~~Al~~l~~A~a~lerAleLDP~~~~ 198 (301)
T 3u64_A 121 LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTG-YVAAFALTPLG-SALPDTVHAAVMMLERACDLWPSYQE 198 (301)
T ss_dssp HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHH-HHHHHTTSCTT-SCCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHH-HHHHHhcCCCC-hHHHHhHHHHHHHHHHHHHhCCCccc
Confidence 111112222222 234455555545577777777766 55443321110 01126778888999999999998 6
Q ss_pred HHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH-hcCHHHHHHHHHHHHHhhcC
Q 001357 675 LYAANGAGVVLAEK-----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA-QGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 675 ~~a~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~ 746 (1093)
..++..+|.+|... |+.++|..+|++++++.|+ .+..+++.+|..++. +|++..|..++++++..-+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~----~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA----HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT----TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 66888888888874 8888888888888888872 247888888888877 48888888888888876433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-06 Score=97.13 Aligned_cols=129 Identities=12% Similarity=0.014 Sum_probs=95.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC---CCHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI-----YPDN---CETLKALGHIYVQLGQIEKAQELLRKAAKI-----DP---RDAQ 411 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~p---~~~~ 411 (1093)
.+..+...|+|++|+.++++++.+ .|++ ..++.++|.+|..+|++++|+.++++++.+ .| ....
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 344455677788888877777765 2333 456777888888888888888888888764 23 3456
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 412 AFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 412 ~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
.+.+||.+| .+|++++|..+|++++.+....-.+.. ..+..+++.++..++.+.+|...|.++.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888 888888888888888888776533222 46677889999999999999999998865
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.6e-06 Score=74.41 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=74.1
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchh
Q 001357 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-----TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 787 (1093)
++.-.+.+|..++..|+|..|+.+|+.|+...+.. ..+.++..||.++++.|+++.|+.++++++.+.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46678899999999999999999999999987433 2388999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 001357 788 FDAGVAMQKF 797 (1093)
Q Consensus 788 ~~la~~~~~~ 797 (1093)
.|++. +...
T Consensus 84 ~n~~~-~~~~ 92 (104)
T 2v5f_A 84 GNLKY-FEYI 92 (104)
T ss_dssp HHHHH-HHHH
T ss_pred hhHHH-HHHH
Confidence 99985 4443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=6.1e-06 Score=76.40 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
..+...|...+..+|.+..+.+.+|.++.+.+ ++.+++.+|+.+++.+ |......+|.+|..++++|+|++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34455555555555555666666666666655 4446666666666655 4333455666666666666666666666
Q ss_pred HHHHhhCCCcHHHHHHHH
Q 001357 221 QRALQLDPENVEALVALA 238 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la 238 (1093)
+++++++|+|..+....-
T Consensus 95 ~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHCTTCHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHH
Confidence 666666666655544433
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.2e-06 Score=69.92 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 158 DRDNVPALLGQACVEFNRGR---YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
+|+++..+..+|.+++..++ ..+|..++++++..+|++ +.+++.+|..++..|++.+|+.+|++++..+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68889999999999877666 789999999999999999 7778889999999999999999999999988873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=73.33 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCChHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG---EVEQASSAFKIVLEAD-R-DNVPALLGQACVEFNRGRYSDSL 182 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~a~~~la~~~~~~g~~~~Al 182 (1093)
+....+...|.+.+..+|.+..+.+..|.++...+ ++++++.+|+.++..+ | .+..+++.+|..+++.|+|++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44557888888888889999999999999999998 6779999999999998 7 56899999999999999999999
Q ss_pred HHHHHHHHhCCCC
Q 001357 183 EFYKRALQVHPSC 195 (1093)
Q Consensus 183 ~~~~~al~~~p~~ 195 (1093)
.+++.+++..|++
T Consensus 92 ~y~~~lL~ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCCCC
Confidence 9999999999999
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.97 E-value=5.9e-05 Score=66.46 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHP------SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
+.-.+.+|..++..|+|..|+.+|+.++...+ .....++..+|.|++++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 44556777777777777777777777776531 123567778888888888888888888888888888877766
Q ss_pred HHH
Q 001357 236 ALA 238 (1093)
Q Consensus 236 ~la 238 (1093)
.++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=82.12 Aligned_cols=89 Identities=18% Similarity=0.169 Sum_probs=54.1
Q ss_pred hcCCHHHHHHHHHHHHHhc-----CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHH
Q 001357 317 SKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------YPDNCETLKALG 383 (1093)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la 383 (1093)
..|+|++|+.+|++++... +..|....++.++|.+|..+|+|++|+.++++++.+ +|+....+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4466677777776666522 233444555666666666667777776666666654 222334566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 001357 384 HIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.+|..+|++++|+.+|++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 6666666666666666666653
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.77 E-value=0.11 Score=62.99 Aligned_cols=243 Identities=13% Similarity=0.149 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CC--h--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------Ch-
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRLILFKY-QD--Y--VDAYLRLAAIAKARNNLQLSIELVNEALKVNGK------YP- 593 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~- 593 (1093)
.+...+|.+ ..|+.++++..+...+... .+ + ..+.+.+|.++...+ .++..++...+..... +.
T Consensus 377 sA~aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ 452 (963)
T 4ady_A 377 TATASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDV 452 (963)
T ss_dssp HHHHHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred HHHHHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHH
Confidence 344444444 4467777777776655421 11 2 335555555554433 4677777776654430 11
Q ss_pred ---hHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHh
Q 001357 594 ---NALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIV 669 (1093)
Q Consensus 594 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 669 (1093)
.+...+|.++...++ +++...+..++..... ....+-++||.+ |.-. |+.+....++.-+..
T Consensus 453 ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli-~vGT------------gn~~ai~~LL~~~~e 518 (963)
T 4ady_A 453 LLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLC-MLGT------------GKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTC------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hccc------------CCHHHHHHHHHHHhc
Confidence 244466666666554 3455666665553221 011344556655 5444 444444444444444
Q ss_pred hCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHH----HHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 670 QHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWI----NLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 670 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~----~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
...+++.-...+|..+...|+.+.+-.+++.+... .++.+.+ .+|..|...|+......++..+...
T Consensus 519 ~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-- 589 (963)
T 4ady_A 519 TQHGNITRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-- 589 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--
T ss_pred cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--
Confidence 33334433444555555677777777776666543 2334433 4566677888865444477666653
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 797 (1093)
...++.-...+|..+...|+.+.+.+++..+.+ -.|+.+++..++++.-.
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli 639 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIA 639 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHh
Confidence 122233333344444445555444444433332 24677888887765443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00019 Score=63.73 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH---HHHHHHHHHHhC-CCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSD---SLEFYKRALQVH-PSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~---Al~~~~~al~~~-p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1093)
...+...|...+..++.+..+.+.+|.++.+..+... ++.+++.++..+ |...-..++.+|..++++|+|..|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455556666666666677777777777777766555 777777777665 433456677777778888888888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHH
Q 001357 220 FQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~ 240 (1093)
++.+|+..|+|..+......+
T Consensus 97 ~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHH
Confidence 888888888777765544433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00016 Score=81.61 Aligned_cols=104 Identities=8% Similarity=0.020 Sum_probs=85.4
Q ss_pred HcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcC
Q 001357 460 EKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIH 539 (1093)
Q Consensus 460 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g 539 (1093)
..|+|++|+.++++++.... .. .-..+|....++.++|.+|..+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~--~~---------------------------------lg~~Hp~~a~~~~nLa~~y~~~g 354 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS--SV---------------------------------FEDSNVYMLHMMYQAMGVCLYMQ 354 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT--TT---------------------------------BCTTSHHHHHHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHhh--Cc---------------------------------cChhchHHHHHHHHHHHHHHhhc
Confidence 46899999999999998421 00 11156778899999999999999
Q ss_pred ChHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChhHHHH
Q 001357 540 DTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALSM 598 (1093)
Q Consensus 540 ~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 598 (1093)
++++|+.++++++.. +|+....+++||.+|..+|++++|..+|++++.+ .|++|.+...
T Consensus 355 ~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 355 DWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 999999999999973 5566778999999999999999999999999886 4777765543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=81.13 Aligned_cols=94 Identities=14% Similarity=0.091 Sum_probs=53.7
Q ss_pred HHHcCChHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCCchhhHHH
Q 001357 278 FFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHEFIFPYYG 347 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~ 347 (1093)
+...|+|++|+.++++++... +.+|....++.++|.+|..+|+|++|+.++.+++... +..|.....+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666666432 2233444556666666666666666666666665421 234444555566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
+|.+|...|++++|+.+|++++.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00017 Score=64.13 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH---HHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhhccHH
Q 001357 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL---AMKMYQNCLRKFYYN--TDAQILLYLARTHYEAEQWQ 767 (1093)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~--~~~~~l~~la~~~~~~g~~~ 767 (1093)
.+...|.......+ ....+.|++||++....+... ++.+++..+.. .. ..-..+|+||.++++.|+|.
T Consensus 19 ~~~~~y~~e~~~~~-----~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 34445555555443 467788888888887776665 88888877664 21 23678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 768 DCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 768 ~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
.|+++++.+++..|+|..+.-....
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999665444433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00046 Score=78.02 Aligned_cols=107 Identities=5% Similarity=-0.094 Sum_probs=86.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
.-+...|++++|+..+++++.... ......+|....++.++|.+|
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~-----------------------------------~~lg~~h~~~~~~~~~L~~~y 339 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNS-----------------------------------ERLPDINIYQLKVLDCAMDAC 339 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSS-----------------------------------CCCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhcc-----------------------------------CcCCccchHHHHHHHHHHHHH
Confidence 345578999999999999997421 011125677888999999999
Q ss_pred HhcCChHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChhHHH
Q 001357 536 EQIHDTVAASVLYRLILFK--------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNALS 597 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 597 (1093)
..+|++++|+.++++++.. +|.....+++||.+|..+|++++|..++++++.+ .|++|.+..
T Consensus 340 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 340 INLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 9999999999999999973 4556778999999999999999999999999876 477766543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0021 Score=58.15 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=93.2
Q ss_pred CCCchHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQIHDT------VAASVLYRLILFKYQD--------YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
..|.++..|......+...|++ +.-+..|++++..-|. ++..|...+.. ...++.+.|...|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5788999999999999999999 8889999999987764 45666666655 5668999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~ 628 (1093)
+.+....+.+|...+.+..++|+...|..++.+++...|.+..
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 9998888899999999999999999999999999999887444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.29 E-value=0.6 Score=56.55 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1093)
|..+..|+.++++.+.+...|.+++. ..+...-+.++..+...+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 56688999999999999999999874 456666666776665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0011 Score=61.67 Aligned_cols=112 Identities=16% Similarity=0.127 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------VPALLGQACVEFNRGRYSDSLEFYKRALQVH---PSC- 195 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~---p~~- 195 (1093)
.+++.....++..|.|+.|+-+...++....++ ..+++.+|.+++..|+|..|...|++++... +..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666667777777777777777655443211 2356777777777777777777777765431 111
Q ss_pred --------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 196 --------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 196 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
...+.+.++.||..+|++.+|+..++.+-. .-..+.....||.+|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 135778888888888888888888765321 123566666666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0076 Score=54.56 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=48.4
Q ss_pred cCCCChhhHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEV------EQASSAFKIVLEADRDN--------VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
+.|++++.|.......-..|+. ++-+..|++++..-|.. +..|+..|.. ...++.+.|..+|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 3456666666655555555655 55555555555554432 2223333322 2334444444444444
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 229 (1093)
+..+... +.+|+..|..-.++|+...|+..+.+++.+.|.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4443333 444444444444444444444444444444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0082 Score=54.13 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=65.8
Q ss_pred CchhHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchh
Q 001357 712 QMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 787 (1093)
..+.+.|++||++....+ ..+++.+++..+.. .+. .-..+|+||.++++.|+|.+|+++.+.+++..|+|..+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 478999999999998765 45799999998885 343 378999999999999999999999999999999996544
Q ss_pred hHHHH
Q 001357 788 FDAGV 792 (1093)
Q Consensus 788 ~~la~ 792 (1093)
-....
T Consensus 115 ~Lk~~ 119 (144)
T 1y8m_A 115 ALKSM 119 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.013 Score=52.85 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
..++.+.+.+|.++.+..+. .+++.+++.++...|...-..++.+|..++++|+|..|+.+.+.+|+..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34677777777777777654 467777777777777666777777888888888888888888888888888777655
Q ss_pred HHHH
Q 001357 236 ALAV 239 (1093)
Q Consensus 236 ~la~ 239 (1093)
....
T Consensus 116 Lk~~ 119 (144)
T 1y8m_A 116 LKSM 119 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0035 Score=58.24 Aligned_cols=138 Identities=18% Similarity=0.143 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCC------chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchh
Q 001357 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPT------KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIF 343 (1093)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 343 (1093)
++..-...++..|.|+.|+.+...++...+.++. ...++..+|.+++..++|..|...|.++++....-+....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444556667778888888888777765543332 2457888999999999999999999998763322111111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
+...++. ...+.. ... .+...++.+.++.||...+++.+|+..++.+-. ....+.+...||.+|
T Consensus 102 ~~~~~~~----~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp --------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred ccccccc----cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 1000000 000000 001 133556777777777777777777777665321 123456666666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.19 Score=55.06 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhh-hHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYAD-VRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1093)
...+.+|..|.++|++++...++...... ++. ++..-..+...|...+....... +..++--...++-
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~ 88 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPF-----LSSISKAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEW 88 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTG-----GGGSCHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHHhchHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHH
Confidence 46899999999999999999999986432 322 22233445556666665543322 2223333333333
Q ss_pred HHhcCCCChhhH------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 120 ASRIDMHEPSTW------VGKGQLLLAKGEVEQASSAFKIVLEADRD------NVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 120 a~~~~p~~~~~~------~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
+- +.-..| ..+|..|+..|+|.+|..++.+++..... -...+.....+|...+++.++...|.+
T Consensus 89 a~----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 89 AK----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 222233 26899999999999999999998875221 145677788889999999999999998
Q ss_pred HHHhC------CCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 001357 188 ALQVH------PSCPGAIRLGIGLCRY-KLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 188 al~~~------p~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~ 226 (1093)
+.... |...+.+...-|..+. ..++|..|...|-.++..
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 86543 2223455666788888 899999999999888754
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.005 Score=54.71 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=65.8
Q ss_pred CchhHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchh
Q 001357 712 QMPDVWINLAHVYFAQGN---FALAMKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 787 (1093)
..+.+.|++||++.+..+ ...++.+++..++. .+. .-..+++||.++++.|+|..|+++.+.+++..|+|..+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 368999999999998764 45799999998876 332 378999999999999999999999999999999996654
Q ss_pred hHHHH
Q 001357 788 FDAGV 792 (1093)
Q Consensus 788 ~~la~ 792 (1093)
-....
T Consensus 116 ~Lk~~ 120 (134)
T 3o48_A 116 ALKSM 120 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.018 Score=51.22 Aligned_cols=82 Identities=10% Similarity=0.083 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 160 DNVPALLGQACVEFNRGRY---SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~---~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
-++.+.+.+|.++.+..+. ..++.+++.+++.+|...-..++.+|..++++|+|..|+.+.+.+++..|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567778888888777654 4678888888887876667778888888888888888888888888888888877665
Q ss_pred HHHHH
Q 001357 237 LAVMD 241 (1093)
Q Consensus 237 la~~~ 241 (1093)
...+.
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.19 Score=54.98 Aligned_cols=264 Identities=11% Similarity=0.059 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChH-----HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCChhHH-
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV-----DAYLRLAAIAKA-RNNLQLSIELVNEALKVNGKYPNAL- 596 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~- 596 (1093)
.-.+.+.+|.+|...|++++-..++.......+..+ .....+...+.. -+..+.-+.++..+++...+....|
T Consensus 18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999888877654333322 222233333332 2445555666666665443332222
Q ss_pred -----HHhhhhhhcccchHHHHHHHHHhhhcCCCCC-hH----HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 001357 597 -----SMLGDLELKNDDWVKAKETFRAASDATDGKD-SY----ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (1093)
Q Consensus 597 -----~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d-~~----~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (1093)
..+|.+|+..|+|.+|...+.++.......| .. .+.....+ |... +++.++...|.+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~------------~n~~k~k~~l~~ 164 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHAL------------SNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHT------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHh------------ccHHHHHHHHHH
Confidence 3789999999999999999998887433212 21 22223334 5555 778888888877
Q ss_pred HHhhC---CCCH----HHHHHHHHHHH-hcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 001357 667 VIVQH---TSNL----YAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1093)
Q Consensus 667 ~l~~~---p~~~----~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 738 (1093)
+.... +.++ .....-|.+++ ..++|..|...|-.+.+.+.....+....+...++.|-+-.+...+--....
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~ 244 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVS 244 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhc
Confidence 75532 1222 22334588888 8999999999999998777533222222333344555445454322222221
Q ss_pred -HHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHh
Q 001357 739 -NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTL 802 (1093)
Q Consensus 739 -~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~~~~ 802 (1093)
+....+ ..+....+..+..+ +..+++.....++...-..-..|+.+.-++..++.......+
T Consensus 245 ~~~~~~~-~~pei~~l~~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L 307 (394)
T 3txn_A 245 GKLAITY-SGRDIDAMKSVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNL 307 (394)
T ss_dssp SHHHHTT-CSHHHHHHHHHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-CCccHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 212222 23334445555555 445666665555554333333465555556665555555443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.35 Score=44.30 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=72.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCChHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH----PSCPGAIR 200 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~----p~~~~~~~ 200 (1093)
|..+...+.++.+++..|.|..++-.+.. -+...+.+-.+.|+...++|..|+..++..+.-. |+....
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~-- 102 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR-- 102 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH--
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc--
Confidence 55556777888889999999888876543 2457778888889999999999999999988432 332111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
+ ...-.+|.+.+. +..+|.++...|+ .++|+..|...+...|-.+.
T Consensus 103 ~--------------------~~ffvd~~DkEfFy~l~a~lltq~g~---r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 103 I--------------------QEMFVDPGDEEFFESLLGDLCTLSGY---REEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp H--------------------HTTSCCTTCHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHHH
T ss_pred c--------------------ceeeeccchHHHHHHHHHHHHHHhcC---HHHhhhHhhhhcCCccccch
Confidence 1 001134555444 3345566666666 66677766666666665443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.01 E-value=1.8 Score=51.63 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHH
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLA---KGEVEQASSAFKIVLEA--------DRDN----------VPALLGQA 169 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la 169 (1093)
+.|+.+|++....+|.... ++..+.+... ..+--+|+.++.+.++. .+.+ ...+...+
T Consensus 266 ~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 3678888888877775433 2222222211 12334566666665532 1222 23455667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
..+...|+|+-|+.+.++++...|.. ...|+.|+.||..+|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 77778888888888888888888888 677888888888888888888776654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.028 Score=67.91 Aligned_cols=82 Identities=9% Similarity=-0.117 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
.+|..+...+++.|+.++|..+|..+... ..-+..+|..+...|++.|++++|..+|..+...+-.+|..++..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34444445555555555555554433211 12234444444444444444444444444444444444444444444
Q ss_pred hHHHHHH
Q 001357 636 NWNYFAA 642 (1093)
Q Consensus 636 ~~~y~~~ 642 (1093)
+. ++..
T Consensus 208 ~g-lcK~ 213 (1134)
T 3spa_A 208 QC-MGRQ 213 (1134)
T ss_dssp HH-HHHH
T ss_pred HH-HHhC
Confidence 44 4443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.051 Score=65.73 Aligned_cols=107 Identities=8% Similarity=-0.069 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQIL 753 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 753 (1093)
....++.+...|++.|++++|..+|..+.+..... ...+..+|..+...|++.|++++|..+|..+... .-.+|..+|
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHH
Confidence 34567888888888888888888887765421000 0136778888888888888888888888888765 356778888
Q ss_pred HHHHHHHHhhccH-HHHHHHHHHHHHhCCC
Q 001357 754 LYLARTHYEAEQW-QDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 754 ~~la~~~~~~g~~-~~A~~~~~~al~~~P~ 782 (1093)
..+..++.+.|+. ++|.++|+++....-.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 8888888888874 6788888888776443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=3.2 Score=48.49 Aligned_cols=142 Identities=8% Similarity=-0.040 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
..+.-|...++.|++..+..+...+.+-.. ...+.+..+..+... .....+...+
T Consensus 8 ~~~~~a~~a~~~~~~~~~~~l~~~l~~~pL--------------~~yl~y~~l~~~l~~-----------~~~~ev~~Fl 62 (618)
T 1qsa_A 8 SRYAQIKQAWDNRQMDVVEQMMPGLKDYPL--------------YPYLEYRQITDDLMN-----------QPAVTVTNFV 62 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSGGGTTSTT--------------HHHHHHHHHHHTGGG-----------CCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhcCCCc--------------HHHHHHHHHHhCccc-----------CCHHHHHHHH
Confidence 457778888999999999988776533211 111222222211111 0122444556
Q ss_pred hcCCCChhhHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Q 001357 122 RIDMHEPSTWVGKGQL---LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~---~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
..+|+.|..-..+... +...+++..-+.+|.. .|.+...-...+......|+-.+|......+-...... +.
T Consensus 63 ~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p~ 137 (618)
T 1qsa_A 63 RANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-PN 137 (618)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-CT
T ss_pred HHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-cH
Confidence 6678887665444333 3346677766665543 37777777777777888999888888777766555433 33
Q ss_pred HHHHHHHHHHHcCCH
Q 001357 199 IRLGIGLCRYKLGQL 213 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~ 213 (1093)
.+-.+-..+...|.+
T Consensus 138 ~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCC
Confidence 334444444444433
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.05 E-value=2.1 Score=39.36 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-------------- 371 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------------- 371 (1093)
+.-..++.+++-.|.|..++-.+. .-+.+.+.+.-+.||.+..+|..|+.+++.++.-
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~--------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ 105 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH--------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE 105 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH--------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH--------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence 334445555556666665554442 2233444555566666666666666666666621
Q ss_pred ---CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001357 372 ---YPDNCE-TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1093)
Q Consensus 372 ---~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 412 (1093)
+|.+-+ .+..+|.++.+.|+.++|+.+|.......|-.+.+
T Consensus 106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 233433 55677888888888888888888888877754433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.13 Score=61.36 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
..+...+..+...|+|+-|+.+.++++...|....+|+.++.+|..+|+|+.|+-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 356667888999999999999999999999999999999999999999999999776543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=11 Score=43.88 Aligned_cols=398 Identities=9% Similarity=-0.046 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH--HHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR--LGIGLC 206 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~--~~la~~ 206 (1093)
...+..+...+..|++..+..+...+ ...|- ..++....+....+.. .-.-+...+..+|+.+..-. ...-..
T Consensus 7 ~~~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL--~~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPL--YPYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTT--HHHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhh-cCCCc--HHHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence 34566778888889987776665432 23343 3333333333333321 11245566677888743322 222333
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
+.+.+++..-+..|.. .|.+....+.++......|+ ...|......+.......+..+..+...+...|....
T Consensus 82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~---~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQ---SEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTC---HHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCH
T ss_pred HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCH
Confidence 4456666665554443 37778777777778888887 6667777776666655556666666666665554433
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH--------------HHHH---------hcCCCCCchh
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM--------------ASVK---------EINKPHEFIF 343 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------------~al~---------~~~~~~~~~~ 343 (1093)
..... .....+..|+...|..+.. .+.. ..........
T Consensus 155 ~~~~~-------------------R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~ 215 (618)
T 1qsa_A 155 LAYLE-------------------RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTR 215 (618)
T ss_dssp HHHHH-------------------HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHH
T ss_pred HHHHH-------------------HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhH
Confidence 22111 1111222222222211111 1110 0000011111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE----TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~ 419 (1093)
..+.++.......+.+.|...+.......+-+.. ....++.-+...+...++...+.+.....+++.......+..
T Consensus 216 ~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A 295 (618)
T 1qsa_A 216 QMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHH
Confidence 2233444455566889999999887654433332 222233333334436677788887665444443333333444
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhH
Q 001357 420 LISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASM 499 (1093)
Q Consensus 420 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1093)
+..+++..|..+|..+..... ......+-+|..+...|+.++|..+|..+...... .+.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~-----~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~f----------------Yg~ 354 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAK-----EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGF----------------YPM 354 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGG-----GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSH----------------HHH
T ss_pred HHCCCHHHHHHHHHHcccccc-----ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCh----------------HHH
Confidence 577999999998865433111 24778899999999999999999999998762110 011
Q ss_pred HHhhhhhhhhhhccCCCCcCCCCc---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHH
Q 001357 500 LQFKDMQLFHRFENDGNHVELPWN---KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576 (1093)
Q Consensus 500 ~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 576 (1093)
+....++. .............. .....+..+..+...|....|...+..++...+ ......++.+....|.+.
T Consensus 355 lAa~~Lg~--~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~--~~~~~~la~~a~~~~~~~ 430 (618)
T 1qsa_A 355 VAAQRIGE--EYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWD 430 (618)
T ss_dssp HHHHHTTC--CCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCC--CCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCChH
Confidence 11011100 00000000000000 111234556677888888888888777665322 344456677777777777
Q ss_pred HHHHHH
Q 001357 577 LSIELV 582 (1093)
Q Consensus 577 ~A~~~~ 582 (1093)
.++...
T Consensus 431 ~~v~~~ 436 (618)
T 1qsa_A 431 LSVQAT 436 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.95 E-value=3.9 Score=50.23 Aligned_cols=101 Identities=23% Similarity=0.190 Sum_probs=64.2
Q ss_pred HHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 135 GQLLLAKGEVEQASS-AFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~-~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
....+..+++++|.. ++.. -| +...+...+..+...|.++.|+...+ + +...+ .....+|++
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~-~~~~f---~~~l~~~~~ 668 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------D-QDQKF---ELALKVGQL 668 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------C-HHHHH---HHHHHHTCH
T ss_pred HhHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------C-cchhe---ehhhhcCCH
Confidence 344566788888876 4411 11 01222555666777888888776552 2 22223 234667888
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRA 260 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~a 260 (1093)
+.|.+..+ ..++...|..+|..+...++ ++.|..+|.++
T Consensus 669 ~~A~~~~~-----~~~~~~~W~~la~~al~~~~---~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLT-----DESAEMKWRALGDASLQRFN---FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHH-----hhCcHhHHHHHHHHHHHcCC---HHHHHHHHHHc
Confidence 88887753 33567788888888888888 88888777765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.5 Score=53.05 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCH----
Q 001357 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDA---- 750 (1093)
Q Consensus 675 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---- 750 (1093)
..+...+|..|...|+++.|..+|.++.....++. ...++++....+++..+++..+...+.++-......+++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34677899999999999999999999999875442 467888999999999999999999999998877666653
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
.+..+.|..+...++|..|...|..++......
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 345577888888999999999999888776544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.86 E-value=1.1 Score=55.40 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=13.5
Q ss_pred ChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 592 YPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
++..|..+|..+++.++++.|..+|.+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555555555555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.56 E-value=3 Score=39.48 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
...|+++.|..+.+.+ ++ ...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~-~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----ND-SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CC-HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4556666666655443 22 445666666666666666666666553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.49 E-value=3.6 Score=46.21 Aligned_cols=101 Identities=19% Similarity=0.141 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC--C
Q 001357 377 ETLKALGHIYVQLGQIEKAQELLRKAAKI-D-PRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV--P 447 (1093)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~-p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~--~ 447 (1093)
.+...|+.+|...|++.+|..++..+..- . ..+ ...+.....++ ..+++..|..++.++........... .
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 45567788888888888888888776532 1 111 45566666677 88899988888888754333322211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
..++...|.++...++|.+|..+|..+...
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 356677899999999999999999998873
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.94 E-value=4.4 Score=45.48 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh-hcCCCC----HH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK-FYYNTD----AQ 751 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~----~~ 751 (1093)
...|+.++...|++.+|..++..+..-.-++.. ..-..++.....+|...+++..|...+.++... +..++. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 457899999999999999999998754432210 112456777788999999999999999998643 333333 45
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~ 780 (1093)
.+.+.|..+...++|.+|.++|..++...
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 66788999999999999999999888753
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.83 Score=51.27 Aligned_cols=121 Identities=11% Similarity=0.116 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD---NVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
..+.+.+..+.+-......-..++..+|..|+..|+++.|.++|.++...... -...++....+++..+++..+...
T Consensus 111 ~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 111 KELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp HHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444444444322222334567889999999999999999999998865432 367889999999999999999999
Q ss_pred HHHHHHhCC---CC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 185 YKRALQVHP---SC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 185 ~~~al~~~p---~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
+.++..... +. ...+....|..++..++|..|...|-.++....
T Consensus 191 ~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 191 LEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 999866522 21 223455667778888999999998888776543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.73 E-value=0.93 Score=45.91 Aligned_cols=117 Identities=13% Similarity=0.013 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+.+++|+..+...++.+|.|......+..+++-.|+|++|...++.+.+++|.....-..+-.+ -.|...=.
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~aE~~R~ 82 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKAAQARK 82 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999875432221111 01111112
Q ss_pred HHHHh--CC---CChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 187 RALQV--HP---SCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 187 ~al~~--~p---~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.++.- .| ..+. ...+.-+......|+.+.|...-..+++..|..
T Consensus 83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 22221 12 2212 223345566667799999999999999887653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.52 E-value=16 Score=38.59 Aligned_cols=218 Identities=14% Similarity=0.084 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhh-HHHHHHHHHHHHHHHHHhchhhhh----------------hh
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADV-RYERIAILNALGVYYTYLGKIETK----------------QR 104 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~la~~y~~~g~~~~~----------------~~ 104 (1093)
.+-+++.=|.++++|++|+.+|-.+...- +... ...-..+...+..+|...+....+ ..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~l----l~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p 112 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTL----LRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP 112 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHH----HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 56778888999999999999988764221 1100 011122333444555554432210 01
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001357 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
.|......|+.+-.+.-...-.++..+..+|..|...+++.+|...|- +..+ +.+..+..+-.-+..
T Consensus 113 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~-~s~~~~a~mL~ew~~---------- 179 (336)
T 3lpz_A 113 VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTK-ESPEVLARMEYEWYK---------- 179 (336)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCT-THHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCC-chHHHHHHHHHHHHH----------
Confidence 223333334443333211122345555555555555555555555441 1100 011111111111111
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCC------------------CcHHH-HHHHHHHH
Q 001357 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ----LDP------------------ENVEA-LVALAVMD 241 (1093)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p------------------~~~~a-~~~la~~~ 241 (1093)
...|.............|..+++...|..+|...++ .+| ..+.. +..+..+.
T Consensus 180 -----~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt 254 (336)
T 3lpz_A 180 -----QDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLS 254 (336)
T ss_dssp -----TSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHH
T ss_pred -----hcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHH
Confidence 111222222233344566777888888776555443 122 22221 22223333
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHc
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYP-YCAMALNYLANHFFFT 281 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~ 281 (1093)
+..+....+..-...|...++.+| .....+..++..|+..
T Consensus 255 ~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 255 VQKGSPDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHSCCHHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HhcCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 344444445556666666676666 6666777777777644
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.78 E-value=5.2 Score=37.84 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMAS 331 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~a 331 (1093)
..|..+|......|+++-|..+|.++
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45555555555555555555555544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.77 E-value=3 Score=42.22 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
++..|.+++|+..+...++.+|.|......+...++-.|+++.|..-++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3445555555555555555555555555555555555555555555555555555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.51 E-value=10 Score=48.35 Aligned_cols=88 Identities=10% Similarity=-0.013 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhH
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK--SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1093)
+..+.++..++...+.++.++.+...++......+.. ...|..+-..+...|+|++|...+...-. ......++
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd----~~~r~~cL 974 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST----TPLKKSCL 974 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH----SSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC----HHHHHHHH
Confidence 3456666777777777887887777777654333221 22466666777777777777666654432 22333445
Q ss_pred HHHHHHHHHcCCHH
Q 001357 346 YGLGQVQLKLGDFR 359 (1093)
Q Consensus 346 ~~la~~~~~~g~~~ 359 (1093)
..+...++..|...
T Consensus 975 r~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 975 LDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHhCCChh
Confidence 55555555555433
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.91 E-value=1.1 Score=50.29 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHh------h-----CCCCHHHHHHHHHHHHhcCCchhHH----------HHHHHHHHHh-cCCCCCC
Q 001357 655 THLEKAKELYTRVIV------Q-----HTSNLYAANGAGVVLAEKGQFDVSK----------DLFTQVQEAA-SGSVFVQ 712 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~------~-----~p~~~~a~~~la~~~~~~g~~~~A~----------~~~~~~~~~~-p~~~~~~ 712 (1093)
+++++|..+-..++. . ++-+...|+.+..++...|+..... ..+-.+.... .......
T Consensus 150 k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~ 229 (523)
T 4b4t_S 150 KELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNET 229 (523)
T ss_dssp -----------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcch
Confidence 777777777665541 1 2223344555555555666665432 2222222222 1111123
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC--CC---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TD---AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~---~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
...++..+-..|+..+.|++|..+..++. ||.. ++ ...++++|+++.-.++|.+|.+.|..|+...|.+..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 35566666788999999999999988764 5533 22 556789999999999999999999999999997653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=2.9 Score=46.02 Aligned_cols=89 Identities=25% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDNV----------------------PALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.|......|+...|...+..++.+....+ .++..++..+...|++.+|+..+..++..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~ 200 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE 200 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444556777788888888776642210 12233444445555555555555555555
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+|-+ ..++..+..+++..|+..+|+..|.++
T Consensus 201 ~P~~-E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 201 HPYR-EPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp STTC-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555 444555555555555555555555544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.79 E-value=21 Score=37.28 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcC
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGS 67 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~ 67 (1093)
..+-+++.=|.+++++++|+.+|..+.
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga 60 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGA 60 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366778888899999999999988764
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.15 E-value=18 Score=46.08 Aligned_cols=144 Identities=9% Similarity=-0.040 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH-------------------- 192 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-------------------- 192 (1093)
.+...+...|.++-|.. .+...|.++...+.+|.+++..|++++|..+|.++-..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34455666676665544 345567777777888888888888888888887653210
Q ss_pred C--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHH----HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 193 P--SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVE----ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 193 p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~----a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
+ .....+|+.+..++.+.|.++.++..-..+++..+. +.. .|..+-..++..++ |++|...+...-.. .
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~---ye~Ay~aL~~~pd~-~ 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK---FDAAHVALMVLSTT-P 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC---SGGGGHHHHHHHHS-S
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC---HHHHHHHHHhCCCH-H
Confidence 0 011234556666777777777777777777765432 221 34445555555555 55555554333211 1
Q ss_pred CcHHHHHHHHHHHHHcCCh
Q 001357 266 YCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~ 284 (1093)
.....+..|....+..|..
T Consensus 969 ~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHhCCCh
Confidence 2234444444444444443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.01 E-value=5.1 Score=44.98 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1093)
++.+|.++.-.++|.+|..++..++...|
T Consensus 273 ~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 273 FFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34455555555555555555555554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=5.2 Score=43.98 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
+...++..++..|++.+|+..+..++..+|-+..++..+..+++..|+..+|+..|+++..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999999999999999999999999988765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=86.81 E-value=4e-05 Score=83.16 Aligned_cols=265 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
+.+.+|..+|.+.+..|...+|+..|-++ .+|+ .+.....+..+.|.|++-+.++..+-+...+. .+-..+..
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHH
Confidence 46789999999999999999999988654 3444 44455556678899999998888776653332 33355788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
||.++++..+-...+ ..|+.+. ....|.-++..|. |+.|.-+|.. ..-+..|+.++...|+|.
T Consensus 125 ayAk~~rL~elEefl-----~~~N~A~-iq~VGDrcf~e~l---YeAAKilys~--------isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-----NGPNNAH-IQQVGDRCYDEKM---YDAAKLLYNN--------VSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTT-----SCCSSSC-THHHHHHHHHSCC---STTSSTTGGG--------SCCCTTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHH-----cCCCccc-HHHHHHHHHHccC---HHHHHHHHHh--------CccHHHHHHHHHHHHHHH
Confidence 888888865533322 2343322 3344544455554 4444433331 122345666777778887
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
.|.....++ .+..+|-....++...+.+.-|..+--..+- .++. +-.+...|...|-+++-+.++
T Consensus 188 ~AVdaArKA--------ns~ktWKeV~~ACvd~~EfrLAqicGLniIv----hade---L~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 188 AAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADE---LEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SSTTTTTTC--------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSC---CSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHhc--------CChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHH---HHHHHHHHHhCCCHHHHHHHH
Confidence 777665543 3346777777888888888777666655552 2222 223445677889999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CC------CHHHHHHHHHHH-hcCCHHHHHH
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-ID-PR------DAQAFIDLGELL-ISSDTGAALD 430 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~~-p~------~~~~~~~la~~~-~~~~~~~A~~ 430 (1093)
+..+.+..-+...+..||.+|.+- +.++-.++++-... ++ |. ....|..+..+| .-.+|+.|..
T Consensus 253 EaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 253 EAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 999988777888999999888775 44555544433211 11 22 345677777777 7778887653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.91 E-value=42 Score=35.35 Aligned_cols=142 Identities=11% Similarity=-0.015 Sum_probs=74.8
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGD 601 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 601 (1093)
..++..+..+|..|+..+++.+|...|- +. ..+.+..+..+..-+...+. |.....+...+.
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg-~~~s~~~~a~mL~ew~~~~~---------------~~e~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--LG-TKESPEVLARMEYEWYKQDE---------------SHTAPLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS-CTTHHHHHHHHHHHHHHTSC---------------GGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--hc-CCchHHHHHHHHHHHHHhcC---------------CccHHHHHHHHH
Confidence 3577899999999999999999988773 21 11122333333322222222 223333333332
Q ss_pred -hhhcccchHHHHHHHHHhhh----cCCC----------C-----ChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 602 -LELKNDDWVKAKETFRAASD----ATDG----------K-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 602 -~~~~~g~~~~A~~~~~~~l~----~~~~----------~-----d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
.|+..++...|...|....+ ..|. . ....+++...+..... . .++ ...+..-.
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLNFl~lLllt~-q--~~~----~~lF~~L~ 267 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLNFISMLLLSV-Q--KGS----PDLFRQLK 267 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHHHHHHHHHHH-H--SCC----HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHHHHHHHHHHH-h--cCC----HHHHHHHH
Confidence 35666777777775554443 1121 0 0122222332202222 1 111 13466666
Q ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHhc
Q 001357 662 ELYTRVIVQHT-SNLYAANGAGVVLAEK 688 (1093)
Q Consensus 662 ~~~~~~l~~~p-~~~~a~~~la~~~~~~ 688 (1093)
+.|...+..+| .-...+..+|.+|...
T Consensus 268 ~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 268 SKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 77777777777 6667777788887744
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.80 E-value=3.7 Score=46.48 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
++..+|.+......+..|..+|.++..+.|.+...++.||.+....|+.-.|+-+|-+++......+.+..++..++
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 45667888888888888999999999999999999999999998888888888888888877666788888877766
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.76 E-value=3.5 Score=46.66 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhc
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 605 (1093)
..+..+|.+......+..|..+|.++....|+....++.||.++...|+.-+|+.+|-+++......+.+..++..++.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46677888888888899999999999999999999999999999999999999999999998877788888888776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1093 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-27 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-26 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-23 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-11 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-14 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 3e-12 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-10 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 1e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 8e-11 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-10 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.001 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 3e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-04 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 6e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-06 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 7e-06 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.001 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 0.002 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 9e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 1e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 5e-04 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.003 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 1e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 4e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 2e-05 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 3e-04 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 0.002 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 6e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 5e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 7e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 6e-04 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 9e-04 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (284), Expect = 1e-27
Identities = 64/440 (14%), Positives = 134/440 (30%), Gaps = 61/440 (13%)
Query: 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224
+ A E+ G + + + + P G + L + ++ +L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAI 60
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
+ +P EA L + + + + R + + L
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+ Y + + + +K I F
Sbjct: 121 VQAYV---------SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ LG V G+ A+ +FEK + + P+ + LG++ + ++A +A
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A +L + A ++A E P + N+ EKG
Sbjct: 232 LSPNHAVVHGNLACVYYE------QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285
Query: 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522
A + AL
Sbjct: 286 SVAEAEDCYNTALRL-------------------------------------------CP 302
Query: 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582
L NLA + + + A LYR L + ++ A+ LA++ + + LQ ++
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 583 NEALKVNGKYPNALSMLGDL 602
EA++++ + +A S +G+
Sbjct: 363 KEAIRISPTFADAYSNMGNT 382
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 113 bits (282), Expect = 3e-27
Identities = 63/389 (16%), Positives = 136/389 (34%), Gaps = 30/389 (7%)
Query: 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGV 91
+ + E + L+++ +F+ ++++ + + + A+ + G
Sbjct: 25 LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL--AIKQNPLLAEAYSNLGNVYKERGQ 82
Query: 92 YYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAF 151
+ R K + E + +
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA------------------Y 124
Query: 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211
L+ + D + GR ++ Y +A++ P+ A +G G
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN-LGCVFNAQG 183
Query: 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271
++ A F++A+ LDP ++A + L + +A + + RA + P A+
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALSLSPNHAVVH 240
Query: 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMAS 331
LA ++ G L A+ + P +Y NLA + KG +A Y
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYN-- 295
Query: 332 VKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+ L ++ + G+ A+ + K LE++P+ L + Q G+
Sbjct: 296 -TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Query: 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+++A ++A +I P A A+ ++G L
Sbjct: 355 LQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (271), Expect = 8e-26
Identities = 62/373 (16%), Positives = 122/373 (32%), Gaps = 44/373 (11%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
G+ E A + + DN LL + + F R S F A++ +P
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 195 CPGA-IRLGIGL-----------------------------CRYKLGQLGKARQAFQRAL 224
A LG L G A Q +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284
N + + + + + +A E P A+A + L F G+
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344
+L E A+ + P +Y NL +++A Y+ + ++
Sbjct: 186 WLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYL---RALSLSPNHAVV 239
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404
+ L V + G A+ + + +E+ P + L + + G + +A++ A +
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 405 IDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP--IEVLNNIGVIHFEKG 462
+ P A + +L + + A L +KA E P +N+ + ++G
Sbjct: 300 LCPTHADSLNNLANIKRE------QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Query: 463 EFESAHQSFKDAL 475
+ + A +K+A+
Sbjct: 354 KLQEALMHYKEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (253), Expect = 1e-23
Identities = 62/403 (15%), Positives = 133/403 (33%), Gaps = 40/403 (9%)
Query: 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
L + + GDF +A + ++ PDN L L I+ Q +++++ A K +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467
A+A+ +LG + LK + I + + +G ++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNH---------- 517
+ + + L + K A K ++ F ++
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184
Query: 518 -----------VELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566
V L N + NL +L++ A Y L ++ + LA
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 567 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGK 626
+ + + L+I+ A+++ +P+A L + + +A++ + A
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA------- 297
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
L A N K E ++E+A LY + + A + VL
Sbjct: 298 -------LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729
++G+ + + + + D + N+ + +
Sbjct: 351 QQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.4 bits (228), Expect = 2e-20
Identities = 65/420 (15%), Positives = 141/420 (33%), Gaps = 38/420 (9%)
Query: 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTL 438
L H Q G E A+ + + +P + + L + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHF------QCRRLDRSAHF 55
Query: 439 LKKAGEEVP--IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
A ++ P E +N+G ++ E+G+ + A + ++ AL +
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---------FIDGYIN 106
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
+ + + + ++ + V +L LL+ + A Y +
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF 616
++ A+ L + A+ + L+I +A+ ++ + +A LG++ + + +A +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226
Query: 617 RAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676
A A + E ++ A + Y R I
Sbjct: 227 LRALS--------------LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Query: 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKM 736
A L EKG ++D + + D NLA++ QGN A+++
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALR-----LCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 737 YQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
Y+ L + A LA + + Q+ AI ++P+ + G +++
Sbjct: 328 YRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 0.001
Identities = 22/156 (14%), Positives = 45/156 (28%), Gaps = 26/156 (16%)
Query: 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYY------- 93
+ +A Y++QG ++ + E+ ++ D L G
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 94 -------------TYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA 140
L I+ +Q EE A + Y KA + + +L
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEE----AVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 141 KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176
+G++++A +K + A
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.2 bits (215), Expect = 3e-18
Identities = 31/241 (12%), Positives = 62/241 (25%), Gaps = 16/241 (6%)
Query: 181 SLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240
S ++ ++A + + +LG L + +Q+ L D E +
Sbjct: 5 SAQYLRQAEVLKADMTDS-KLGPAEVWTSRQAL---QDLYQKMLVTDLEYALDKKVEQDL 60
Query: 241 DLQANEAAGIR-KGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299
A + +G K + A +L F QL + V N
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGF------YTQLLQELCTVFN 114
Query: 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359
L + + +S LG +
Sbjct: 115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--ICQHC---LVHLGDIARYRNQTS 169
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
A + + ++ P N + L + G ++ + A +L +
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229
Query: 420 L 420
L
Sbjct: 230 L 230
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (160), Expect = 1e-11
Identities = 32/363 (8%), Positives = 87/363 (23%), Gaps = 60/363 (16%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
+ QY +A + + +G ++ ++ ++
Sbjct: 5 SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL------------------------- 39
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
Y++ L ++ L + Q +
Sbjct: 40 ------------YQKMLVTDLEYALDKKVEQDLWNHAFKNQI---TTLQGQAKNRANPNR 84
Query: 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTE 292
+ V + + + ++++ F + C + + L + +
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 293 TALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352
++ + H +L + +A YY PY L +
Sbjct: 145 SSCSYICQ-----HCLVHLGDIARYRNQTSQAESYYR---HAAQLVPSNGQPYNQLAILA 196
Query: 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
GD + + + + + + L + + K +A
Sbjct: 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDE----VKTKWGVSDFIKA 252
Query: 413 FIDL-GELLISSDTGAALDAFKTARTLLKKAGEEVPIE-------VLNNIGVIHFEKGEF 464
FI G + +S + K+ + + N+ +H +
Sbjct: 253 FIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFS 312
Query: 465 ESA 467
Sbjct: 313 NET 315
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (159), Expect = 1e-11
Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 14/222 (6%)
Query: 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274
++ Q ++A L + ++ + A + + Q+ A+
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQ------DLYQKMLVTDLEYALDKKVE 57
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
+ + L A N ++ + + G Y +
Sbjct: 58 Q-DLWNHAFKNQITTLQGQAKNRANPNRSEVQANL-SLFLEAASGFYTQLLQELC---TV 112
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
N LG + K + + L LG I Q +
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQ 170
Query: 395 AQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALDAFKTA 435
A+ R AA++ P + Q + L L S D + + +
Sbjct: 171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (124), Expect = 3e-07
Identities = 34/339 (10%), Positives = 91/339 (26%), Gaps = 38/339 (11%)
Query: 394 KAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNN 453
++ + LR+A + + + E+ S A D ++ + + +E
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSR--QALQDLYQKMLVTDLEYALDKKVEQD-- 59
Query: 454 IGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN 513
F++ + + + ++ V + L+ +
Sbjct: 60 -----LWNHAFKNQITTLQGQ------AKNRANPNRSEVQANLSLFLEAASGFYTQLLQE 108
Query: 514 DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573
+ L + + T A + L IA+ RN
Sbjct: 109 LCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRN 166
Query: 574 NLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLS 633
+ A ++ + L L D + + + ++
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS------------IA 214
Query: 634 LGNWNYFAALRN-----EKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688
+ + AA N K + + + + ++ ++Y +
Sbjct: 215 VKF-PFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVY--LSKSLEKLSP 271
Query: 689 GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ 727
+ + + + + A S + V INL ++ +
Sbjct: 272 LREKLEEQFKELLFQKAFNSQQLVHVTV-INLFQLHHLR 309
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 3e-06
Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 93 YTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFK 152
+ LG I KQ + + + V G + + + QA S ++
Sbjct: 123 SSQLGIISNKQTHTSA----IVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYR 176
Query: 153 IVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGA 198
+ N A + ++G + ++ +Y R++ V P A
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.1 bits (178), Expect = 2e-14
Identities = 31/260 (11%), Positives = 67/260 (25%), Gaps = 13/260 (5%)
Query: 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLCRYKLGQLGKAR 217
R+ + L + E + L F + L+V+P G L R +
Sbjct: 70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL 129
Query: 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277
+ R L+ D N + QA + + + +Y +
Sbjct: 130 ELCARFLEADERNFHCWDYRRFVAAQAAV--APAEELAFTDSLITRNFSNYSSWHYRSCL 187
Query: 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337
+ L ++ +++ +Y + +
Sbjct: 188 LPQLHPQ-------PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH---RWLLG 237
Query: 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397
E +F + L + +++ T+ L L ++ +
Sbjct: 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 297
Query: 398 LLRKAAKIDPRDAQAFIDLG 417
+DP A DL
Sbjct: 298 YFSTLKAVDPMRAAYLDDLR 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 3e-12
Identities = 42/316 (13%), Positives = 94/316 (29%), Gaps = 19/316 (6%)
Query: 117 YNKASRID----MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
Y+K + + + + +G L +G++ A F+ ++ D ++ A +
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
+ ++ +R L++ P A+ + +A + + L+ P
Sbjct: 64 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAH 122
Query: 233 ALVALAV-----MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLV 287
+ + G E++ A+ L+ + ++
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF-LAAVRLDPTSIDPDVQCGLGVL 181
Query: 288 EQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIF 343
L+ + N ++ G G +V + E +I
Sbjct: 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241
Query: 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG----HIYVQLGQIEKAQELL 399
Y LG + LG R A+ +F + L + + G +I+ L
Sbjct: 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301
Query: 400 RKAAKIDPRDAQAFID 415
D RD +
Sbjct: 302 DAYGAADARDLSTLLT 317
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (148), Expect = 1e-10
Identities = 53/291 (18%), Positives = 103/291 (35%), Gaps = 23/291 (7%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
GL R + G L A F+ A+Q DP+++EA L + + + ++R E+
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ---ELLAISALRRCLEL 82
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP------------TKSHSYYNL 311
P AL LA F ++ L T +
Sbjct: 83 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
S S + + ++A+V ++ GLG + G++ A+ F L +
Sbjct: 143 LGSLLSDSLFLEVKELFLAAV-RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 201
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISS-DTGAALD 430
P++ LG Q E+A R+A ++ P ++ +LG I+ A++
Sbjct: 202 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261
Query: 431 AFKTARTLLKKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDAL 475
F A + +K+ + + + + G+ ++ + L
Sbjct: 262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 2e-10
Identities = 46/294 (15%), Positives = 82/294 (27%), Gaps = 24/294 (8%)
Query: 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379
Y+K + E P + G +L+ GD +A+ FE ++ P + E
Sbjct: 3 TYDKGYQF------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 56
Query: 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG-----------AA 428
+ LG + Q A LR+ ++ P + A + L +
Sbjct: 57 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 116
Query: 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKT 488
A+ T ++ + I F + F A+ D +
Sbjct: 117 TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176
Query: 489 KTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLY 548
V+ + N L L N + E + Y
Sbjct: 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------Y 229
Query: 549 RLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602
R L Y+ + L + ++E EAL + K G +
Sbjct: 230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 37/279 (13%), Positives = 74/279 (26%), Gaps = 10/279 (3%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIE 580
P F Q D A +L+ + + +++A+ L L+I
Sbjct: 15 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 74
Query: 581 LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNY 639
+ L++ AL L +A E R T G
Sbjct: 75 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 134
Query: 640 FAALRNEKRAPKLEATHLEKAKELYTRVI--VQHTSNLYAANGAGVVLAEKGQFDVSKDL 697
L + + KEL+ + + + G GV+ G++D + D
Sbjct: 135 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 194
Query: 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLA 757
FT + + A + + L
Sbjct: 195 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------GYIRSRYNLG 247
Query: 758 RTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796
+ ++ + L A+++ + R + G +
Sbjct: 248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 286
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 61.6 bits (149), Expect = 8e-11
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408
+ L G + AL + ++ P + + + G E+A E L ++ K+ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 409 DAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468
L L+ ++ K GE + + ++E
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQ---GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 119
Query: 469 QSFKDAL 475
+
Sbjct: 120 ELALQIE 126
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/130 (11%), Positives = 36/130 (27%)
Query: 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE 172
A + +A + + S +LL G+ E+A ++ + +P +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 74
Query: 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232
D + A + + L + + + +L E
Sbjct: 75 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134
Query: 233 ALVALAVMDL 242
+ D+
Sbjct: 135 LANDTSFSDV 144
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-07
Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%)
Query: 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194
+ L++G+++QA ++A + + G + + E +++++ P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254
L + + A+ A + + E + + + + + + +
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS--- 119
Query: 255 EKMQRAFEIYPYCAMALNYLA 275
E + E+ N +
Sbjct: 120 ELALQIEELRQEKGFLANDTS 140
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 47.0 bits (111), Expect = 5e-06
Identities = 19/138 (13%), Positives = 40/138 (28%), Gaps = 7/138 (5%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
P + + GD+E+A M S+K P ++ L + +
Sbjct: 27 PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE-YLPGASQLRHLVKAAQARKDF 83
Query: 362 LTNFEKVLEI-YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG-EL 419
+ + ++ + E+ EL + ++ D
Sbjct: 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 143
Query: 420 LISSD--TGAALDAFKTA 435
+ D G ++ F TA
Sbjct: 144 VRDIDDRLGGYIELFSTA 161
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.5 bits (102), Expect = 7e-05
Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 10/137 (7%)
Query: 312 ARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371
++ S+G ++A + ++K P + ++ GDF A + +++
Sbjct: 3 WKNALSEGQLQQALELLIEAIKA--SP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
Query: 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALD 430
+P+ L H+ + + A + + + L
Sbjct: 60 FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS------MVSQ 113
Query: 431 AFKTARTLLKKAGEEVP 447
++ L + E
Sbjct: 114 DYEQVSELALQIEELRQ 130
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 42.3 bits (99), Expect = 2e-04
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 6/142 (4%)
Query: 652 LEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711
L L++A EL I + + +L G F+ + + Q +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP----- 61
Query: 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKK 771
+ L H+ A + + N + L ++ ++ +
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAAT-AKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120
Query: 772 SLLRAIHLAPSNYTLRFDAGVA 793
L+ L L D +
Sbjct: 121 LALQIEELRQEKGFLANDTSFS 142
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.4 bits (94), Expect = 7e-04
Identities = 10/138 (7%), Positives = 32/138 (23%), Gaps = 5/138 (3%)
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+++ +E + A + P A + G ++ ++ + P
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF---PEYLPGAS 68
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
L + + + + + D+ ++
Sbjct: 69 QLRHLVKAAQARKDFAQGAATAKVLGENEELTK--SLVSFNLSMVSQDYEQVSELALQIE 126
Query: 370 EIYPDNCETLKALGHIYV 387
E+ + V
Sbjct: 127 ELRQEKGFLANDTSFSDV 144
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (144), Expect = 3e-10
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 7/210 (3%)
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
G+ LG AR F +AL + P+ E L + QA E E
Sbjct: 43 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---FDAAYEAFDSVLE 99
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ P A ++ G+ L + P L + + +
Sbjct: 100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY---QDDPNDPFRSLWLYLAEQKLDEKQ 156
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ K + + + LG + + + + ET L
Sbjct: 157 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYL 215
Query: 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
G Y+ LG ++ A L + A + +
Sbjct: 216 GKYYLSLGDLDSATALFKLAVANNVHNFVE 245
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 35/249 (14%), Positives = 69/249 (27%), Gaps = 8/249 (3%)
Query: 143 EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202
+ + D + L + + + G + + + +AL + P P
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY- 76
Query: 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262
+G+ + G A +AF L+LDP L A + Q
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNY-------AHLNRGIALYYGGRDKLAQDDLL 129
Query: 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322
+ + + + Q +Q E + + + + +
Sbjct: 130 AFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQT 189
Query: 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382
+ + + LG+ L LGD SA F+ + N +
Sbjct: 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYA 249
Query: 383 GHIYVQLGQ 391
LGQ
Sbjct: 250 LLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (91), Expect = 0.001
Identities = 33/250 (13%), Positives = 63/250 (25%), Gaps = 19/250 (7%)
Query: 361 ALTNFEKVLEIY----PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416
L E++L + + L G +Y LG A+ +A I P + F L
Sbjct: 18 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL 77
Query: 417 GELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476
G L + A + L N G+ + G + A
Sbjct: 78 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAH----LNRGIALYYGGRDKLAQDDLLAFYQ 133
Query: 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLE 536
D + + + + Q + + ++ +
Sbjct: 134 -------DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 186
Query: 537 QIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK----Y 592
+ + + L + +L + L A+ N +
Sbjct: 187 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246
Query: 593 PNALSMLGDL 602
AL L L
Sbjct: 247 RYALLELSLL 256
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 61.1 bits (146), Expect = 3e-10
Identities = 52/321 (16%), Positives = 91/321 (28%), Gaps = 33/321 (10%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVP-----ALLGQACVEFNRGRYSDSLEFYKRA 188
+ Q+ + G ++A K+ LE A V +G + SL ++
Sbjct: 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77
Query: 189 LQVHPSCP-----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--------ENVEALV 235
Q+ + + G L A + ++A QL + +
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE------Q 289
A + Y + L +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 290 LTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFPYYGL 348
L H S++ + GD A + + K E H + +
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 349 GQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKA 402
+ Q+ LG+F A E++ E D L L +Y Q G+ AQ +L A
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 403 AKIDPR--DAQAFIDLGELLI 421
K+ R F+ GE +
Sbjct: 318 LKLANRTGFISHFVIEGEAMA 338
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (94), Expect = 6e-04
Identities = 40/320 (12%), Positives = 92/320 (28%), Gaps = 23/320 (7%)
Query: 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLIL------FKYQDYVDAYLRLAAIAKARNN 574
++++ L +L + + L + + + + ++ + I A+
Sbjct: 47 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 106
Query: 575 LQLSIELVNEALKVNGKYPN--------ALSMLGDLELKNDDWVKAKETFRAASDATDGK 626
LQ + E +A ++ + + + L +A+ + R+ +
Sbjct: 107 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166
Query: 627 DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686
L +L + + + L A +
Sbjct: 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLN--RLENLLGNGKYHSDWISNANKVRVIYWQ 224
Query: 687 EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746
G + + + + W N+A G F A + +
Sbjct: 225 MTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARS 283
Query: 747 NTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR--FDAGVAMQKFSAS 800
+ LL L + +++A + D ++ LL A+ LA + G AM +
Sbjct: 284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 343
Query: 801 TLQKTRRTADEVWHDNTVLR 820
+Q E +LR
Sbjct: 344 LIQLNTLPELEQHRAQRILR 363
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 3e-08
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 28/169 (16%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
S +N K D++ A + + PH I + +G + L + A F
Sbjct: 7 SLWNEGVLAADKKDWKGALDAF----SAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFT 60
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTG 426
+ + G +Y Q + + A + L++A +
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI-------------- 106
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
+L + EVL NI ++ +K E++ A + A
Sbjct: 107 --------DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (116), Expect = 6e-07
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361
S +N+ Y + + A + IN+ Y+ G + + + A
Sbjct: 33 DPHSRICFNIGCMYTILKNMTE---AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89
Query: 362 LTNFEKVLEIYPDN----------------CETLKALGHIYVQLGQIEKAQELLRKAAKI 405
+ + ++ L N CE L + +Y + + +KA+E L A +
Sbjct: 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149
Query: 406 DPRDAQAFID 415
+ ID
Sbjct: 150 KSEPRHSKID 159
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 3e-04
Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 18/153 (11%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
++ + A ++ + G + + +A AF + D+ A
Sbjct: 17 DKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 73
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQ---------------VHPSCPGAIRLGIGLCRYKL 210
+ + + +Y +++ K AL + I K
Sbjct: 74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133
Query: 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243
+ KA + A + E + + A+ +
Sbjct: 134 EEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 5e-06
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ L + +++ DY L+ +++ + + L + GD AL
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQ 391
+K+LE+ P++ L + + +
Sbjct: 68 LTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 345 YYGLGQVQLKLGDFRSALTNFEKVLEIY-------PDNCETLKALGHIYVQLGQIEKAQE 397
+ LG+V D+ E+ L D L L + Q G ++KA
Sbjct: 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALL 67
Query: 398 LLRKAAKIDPRDAQAFIDLGEL 419
L +K ++DP +A +L
Sbjct: 68 LTKKLLELDPEHQRANGNLKYF 89
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (110), Expect = 7e-06
Identities = 31/271 (11%), Positives = 69/271 (25%), Gaps = 39/271 (14%)
Query: 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL------D 227
+ ++ ++ + +A ++ +L A +F +A +
Sbjct: 29 DSYKFEEAADLCVQAATIY---------------RLRKELNLAGDSFLKAADYQKKAGNE 73
Query: 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL--ANHFFFTGQHF 285
E V + +E + F N+ H
Sbjct: 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133
Query: 286 LVEQLTETALAV-----TNHGPTKSHSYYNLARSYHSKGDYEKAGLYY----MASVKEIN 336
+ + LA + + A G Y +A Y +S+
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 337 KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQ--L 389
+ G QL D +A ++ P+ LK+L +
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 390 GQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
Q+ + + ++D + E +
Sbjct: 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESI 284
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.0 bits (92), Expect = 0.001
Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 14/246 (5%)
Query: 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP------NALSMLGDLELKND 607
K+++ D ++ A I + R L L+ + +A K N
Sbjct: 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRV 667
+ V A ++ A + + + + L N+ E A E Y +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ- 150
Query: 668 IVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM--PDVWINLAHVYF 725
+ + A GQ+ + D+++++ +++ G+ Q D ++
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210
Query: 726 AQGNFALAMKMYQNCLRKFYYNTDAQ-----ILLYLARTHYEAEQWQDCKKSLLRAIHLA 780
A + A + Q + D++ L A ++EQ + K + L
Sbjct: 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270
Query: 781 PSNYTL 786
T+
Sbjct: 271 KWKITI 276
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (89), Expect = 0.002
Identities = 21/187 (11%), Positives = 55/187 (29%), Gaps = 19/187 (10%)
Query: 308 YYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364
A Y + + AG ++ + + E Y + G+ +A+ +
Sbjct: 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99
Query: 365 FEKVLEIYPDNCET-------LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417
E ++I+ + + + L KA + A + +D +
Sbjct: 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159
Query: 418 ELLISSDTGAALDAFKTARTLLKKAGEEVPI---------EVLNNIGVIHFEKGEFESAH 468
+ +D A + A + K + + G+ + +A
Sbjct: 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219
Query: 469 QSFKDAL 475
++ ++
Sbjct: 220 RTLQEGQ 226
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.3 bits (106), Expect = 9e-06
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366
Y +A Y + I + Y LK+ AL +
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYG---RAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421
+ LE+ + + LG +++ ++A L++A + F D +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.3 bits (98), Expect = 1e-04
Identities = 18/189 (9%), Positives = 56/189 (29%), Gaps = 7/189 (3%)
Query: 204 GLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263
G + + +A + RA+ +P A+ L+ + + + +RA E+
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ---PEQALADCRRALEL 67
Query: 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323
A +L + + A ++ + ++ + S ++
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKR 124
Query: 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALG 383
+ + ++ H ++ + + +L + + E I
Sbjct: 125 WNSIEERRIHQESELHSYL-TRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
Query: 384 HIYVQLGQI 392
+ ++
Sbjct: 184 KYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.3 bits (93), Expect = 5e-04
Identities = 22/199 (11%), Positives = 51/199 (25%), Gaps = 11/199 (5%)
Query: 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTAR 436
+ LK G+ + +A +A +P A + + + A
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496
L ++ +G E ++ A + + A L + + D
Sbjct: 65 LELDGQ----SVKAHFFLGQCQLEMESYDEAIANLQRAYS-------LAKEQRLNFGDDI 113
Query: 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556
S L+ + ++ E H E + A ++ + +
Sbjct: 114 PSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173
Query: 557 DYVDAYLRLAAIAKARNNL 575
+ + L
Sbjct: 174 QQACIEAKHDKYMADMDEL 192
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.0 bits (87), Expect = 0.003
Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)
Query: 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165
+ A Y +A + + + L + EQA + + LE D +V A
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAH 75
Query: 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225
+ Y +++ +RA + I L A++ +++
Sbjct: 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI------PSALRIAKKKRWNSIE 129
Query: 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265
+ E+ + + L A E + +E+ QR E +
Sbjct: 130 ERRIHQESELHSYLTRLIAAER---ERELEECQRNHEGHE 166
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 3/117 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
++ A Y DYE A +Y +++ + L+ + AL
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRS---LAYLRTECYGYALG 65
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420
+ + +E+ + + LG+ A K+ P D A + E
Sbjct: 66 DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369
+ S D K + + + F Y D R + E++L
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63
Query: 370 EI--YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412
+ + + L +L + EKA + +R + +P++ QA
Sbjct: 64 PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (100), Expect = 2e-05
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 138 LLAKGEVEQASSAFKIVLEADRDNVPALLG---QACVEFNRGRYSDSLEFYKRALQVHPS 194
L++ ++ + F+ A + + + L
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 195 CPGAIRL-GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241
+ + + Y+L + KA + + LQ +P+N +A ++D
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 4e-05
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 1/121 (0%)
Query: 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330
+ + N E+ ++ A + Y D + G+ +
Sbjct: 2 MEAVLNELVSVEDLLKFEKKFQSEKAA-GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLE 60
Query: 331 SVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390
+ E + L +L ++ AL +L+ P N + + I +
Sbjct: 61 ELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
Query: 391 Q 391
+
Sbjct: 121 K 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 2/92 (2%)
Query: 208 YKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267
+ L K + FQ + A ++ IRKG+ ++
Sbjct: 10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69
Query: 268 AM--ALNYLANHFFFTGQHFLVEQLTETALAV 297
+ YLA + ++ + L
Sbjct: 70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 101
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.002
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS-SDTGAALDAFKTARTLLKKAGE 444
V + + K ++ + + L+ LL K +
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68
Query: 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475
E + + + V ++ E+E A + + L
Sbjct: 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 99
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.003
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 2/99 (2%)
Query: 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744
L + F + A S S Q + + + + + L K
Sbjct: 9 LVSVEDLLKFEKKFQSEKAAGSVSKSTQF--EYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 745 YYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783
+ YLA +Y ++++ K + + P N
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 105
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.4 bits (106), Expect = 2e-05
Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 27/247 (10%)
Query: 185 YKRALQVHPSCP-------------GAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN 230
Y++ L V P + G +A ++RA+ L +N
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290
+ A A + + + ++ +I P +
Sbjct: 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVY--IQYMKFARRAEGIKSGRMI 156
Query: 291 TETALAVTNHGPTKSHSYYNLAR-SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349
+ A T+ H Y A Y+ D A + +K+ E++ Y
Sbjct: 157 FKKAR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY- 212
Query: 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKI 405
L + + FE+VL E + ++ G + ++ ++
Sbjct: 213 --LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270
Query: 406 DPRDAQA 412
+ +
Sbjct: 271 FREEYEG 277
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 19/255 (7%)
Query: 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL-LGQACVEFNRGRYSDSLEFYKRAL 189
KG + AK ++A++ ++ + L A E +R +Y Y R L
Sbjct: 67 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126
Query: 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249
+ P + + + + R F++A + V A+M+ ++
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--D 184
Query: 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYY 309
+ + + Y + ++ + L E L + P KS +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 310 NLARSYHSK-GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKV 368
++ S GD S+ ++ K F + G + L + K
Sbjct: 245 ARFLAFESNIGDLA--------SILKVEKRRFTAFR-------EEYEGKETALLVDRYKF 289
Query: 369 LEIYPDNCETLKALG 383
+++YP + LKALG
Sbjct: 290 MDLYPCSASELKALG 304
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 43.0 bits (100), Expect = 4e-05
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 8/137 (5%)
Query: 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334
A + +L + + ++ NLA Y +Y K K
Sbjct: 34 AVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTK---AVECCDKA 90
Query: 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ Y G+ QL + +F SA +FEKVLE+ P N + + + +
Sbjct: 91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNE 150
Query: 395 AQE-----LLRKAAKID 406
+ +K A+ D
Sbjct: 151 RDRRTYANMFKKFAEQD 167
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 38.0 bits (87), Expect = 0.002
Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF------------IFPYYGLGQV 351
++ Y G Y +A + Y V + + + + L
Sbjct: 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 73
Query: 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411
LKL ++ A+ +K L + N + L G + + + E A+ K +++P++
Sbjct: 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133
Query: 412 AFIDLGELL 420
A + +
Sbjct: 134 ARLQIFMCQ 142
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 6e-05
Identities = 25/278 (8%), Positives = 75/278 (26%), Gaps = 12/278 (4%)
Query: 369 LEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLIS--SDTG 426
+ + + + + E+A +L R A +++ + + LL S D
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486
++ K +V ++ V+ + + D +
Sbjct: 96 EEMNYITAIIEEQPK-----NYQVWHHRRVLVEWLRDPSQELEFIAD--ILNQDAKNYHA 148
Query: 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASV 546
+ + + + + D + + + V+ N ++
Sbjct: 149 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 208
Query: 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL--EL 604
+I + + + ++ L+ + P ++ L D+ ++
Sbjct: 209 TLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268
Query: 605 KNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWNYFA 641
+ ++ A + T+ W Y
Sbjct: 269 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 306
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
G K + + A + E D N+ + QA V F +G Y+ E ++A++V
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 194 SCPGA------IRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230
IG +K + A + ++L
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 5e-04
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVK----EINKPHEFIFPYYGLGQVQLKLGDFR 359
++ L + K D++ A +Y + + + Y+ G
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407
A+ + E Y + +G+ Y + + + A K+
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 19/177 (10%), Positives = 49/177 (27%), Gaps = 20/177 (11%)
Query: 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279
F +D ++V+ ++ ++ + + A + Y +
Sbjct: 9 FPEDADVDLKDVDKILLIS---EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAE 65
Query: 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339
L P N+ D++ + ++ +
Sbjct: 66 DADGAKL--------------QPVALSCVLNIGACKLKMSDWQG---AVDSCLEALEIDP 108
Query: 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ 396
Y Q L ++ AL + +K EI P++ L + ++ + +
Sbjct: 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 7e-04
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 13/142 (9%)
Query: 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP------- 344
+ L + S N+ ++ ++E A Y ++ +
Sbjct: 14 DVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ 73
Query: 345 ------YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398
+G +LK+ D++ A+ + + LEI P N + L + L + ++A
Sbjct: 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 133
Query: 399 LRKAAKIDPRDAQAFIDLGELL 420
L+KA +I P D +L ++
Sbjct: 134 LKKAQEIAPEDKAIQAELLKVK 155
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-------------IFPYYGLGQ 350
+ + K + +A + Y ++ E+ I L
Sbjct: 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 75
Query: 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410
K D+ A+ + KVL+I +N + L LG + G +E+A+E L KAA ++P +
Sbjct: 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 135
Query: 411 QAFIDLGELL 420
+
Sbjct: 136 DIRNSYELCV 145
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.5 bits (88), Expect = 0.001
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 276 NHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI 335
+ F+ + + + + + NLA Y+ DY KA + +K
Sbjct: 38 VKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 97
Query: 336 NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394
+ ++ + G A N K + P+N + + +L + K
Sbjct: 98 KNNVKALYKLG---VANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 9e-04
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193
KG L+ G ++ A + ++ D N ++ +G Y + E + + + P
Sbjct: 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68
Query: 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238
L + +A++ ++ L+ + N + L
Sbjct: 69 DWGK-GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 112
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 3/116 (2%)
Query: 304 KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363
+ + S G+ + A Y + I Y K GD++ A
Sbjct: 2 QVNELKEKGNKALSVGNIDDALQCYS---EAIKLDPHNHVLYSNRSAAYAKKGDYQKAYE 58
Query: 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419
+ K +++ PD + L + E+A+ + K + + Q L +
Sbjct: 59 DGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1093 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.82 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.76 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.74 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.71 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.71 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.69 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.5 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.39 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.37 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.36 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.3 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.27 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.2 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.19 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.16 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.15 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.13 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.12 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.11 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.94 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.69 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.69 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.54 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.34 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.18 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.96 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.79 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.57 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.33 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.2 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-33 Score=316.02 Aligned_cols=330 Identities=22% Similarity=0.300 Sum_probs=209.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
+.+|..+++.|+|++|+..|+++++.+|+++.+++.+|.+++..|++++|+.+|++++..+|++ ..+++.+|.++..+|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLGNVYKERG 81 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHhhhhc
Confidence 4577888888888888888888888888888888888888888888888888888888888888 677888888888888
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
++++|+..|..++..+|.....+............ ...+...........+................+....+...+
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD---MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC---SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 88888888888888888888877777777666655 555555555555556555555555555555555555555555
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
...+... |..+.++..+|..+...|+++.|...+.+++. ..|....++..+|.++...|++++|+..|.++...
T Consensus 159 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 159 LKAIETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT---LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHhhccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHH---hCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 5544332 34445555555555555555555555555554 33444555555555555555555555555555555
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 001357 372 YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEV 450 (1093)
Q Consensus 372 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 450 (1093)
.|.....+..+|.++...|++++|+..|++++.++|+++.++..+|.++ ..|++.+|+..+..+....|. ...+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ 307 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-----HADS 307 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-----CHHH
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-----cchh
Confidence 5555555555555555555555555555555555555555555555555 555555555555444443222 2344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 451 LNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 451 ~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
+..++.++...|++++|+.+|++++.
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-33 Score=314.66 Aligned_cols=385 Identities=19% Similarity=0.255 Sum_probs=338.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN 245 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~ 245 (1093)
+.+|..+++.|+|++|+..|+++++.+|++ +.+++.+|.++..+|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDN-TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence 468899999999999999999999999999 7789999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 001357 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1093)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1093)
+ +++|+..+..+...+|................+.+..+........... +.........+......+....+.
T Consensus 82 ~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
T d1w3ba_ 82 Q---LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp C---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC---TTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred c---ccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccchhhhhH
Confidence 9 9999999999999999999999999988888888888777777666543 344467777888888888888888
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
..+.+.+. ..|....++..+|.++...|+++.|+..+.+++..+|+++.++..+|.++...|++++|+..|.++...
T Consensus 156 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 156 ACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhhc---cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 88888887 567778888889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001357 406 DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484 (1093)
Q Consensus 406 ~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 484 (1093)
.|.....+..+|.++ ..|++++|+..|++++.+.|. .+.++..+|.++...|++.+|+..|..++.
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------- 299 (388)
T d1w3ba_ 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-----FPDAYCNLANALKEKGSVAEAEDCYNTALR-------- 299 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--------
T ss_pred hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--------
Confidence 888888888888888 888899999988888876544 478888888888888999999888888877
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHH
Q 001357 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564 (1093)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (1093)
..|....++..++.++...|++++|+..|+++++.+|+++.+++.
T Consensus 300 -----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T d1w3ba_ 300 -----------------------------------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp -----------------------------------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred -----------------------------------cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 446677888888888888889999999998888888888888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccc
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 608 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 608 (1093)
+|.++...|++++|+.+|+++++++|+++.++.++|.+|.++|+
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 88888888899999999988888888888888888888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.7e-23 Score=224.15 Aligned_cols=268 Identities=14% Similarity=0.176 Sum_probs=179.6
Q ss_pred HHHHHhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 117 YNKASRIDMH----EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 117 ~~~a~~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
|+++....+. +...++.+|..++..|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|.+++..+
T Consensus 4 ~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 83 (323)
T d1fcha_ 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83 (323)
T ss_dssp HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence 4444444433 345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
|++ ...++.+|.++..+|++++|+..|.+++...|.....+..........+ .....
T Consensus 84 p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 140 (323)
T d1fcha_ 84 PDN-QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG----------------------LGPSK 140 (323)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------------------------
T ss_pred ccc-ccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcc----------------------cccch
Confidence 999 7889999999999999999999999999999976443221111100000 00000
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.....+...+.+.++...+.+++...+. ...+.++..+|.++...|++++|+.+|++++. ..|....+++.+|.++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~ 216 (323)
T d1fcha_ 141 RILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATL 216 (323)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHhhc-ccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcc
Confidence 0000111122233333333333332211 12234556666666666666666666666665 3455566666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001357 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQ 411 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 411 (1093)
...|++++|+.+|+++++.+|+++.++..+|.+|...|++++|+..|++++.++|++..
T Consensus 217 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 217 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred cccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 66666666666666666666666666666666666666666666666666666665544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-22 Score=222.93 Aligned_cols=262 Identities=15% Similarity=0.110 Sum_probs=217.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhh
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 603 (1093)
+....+..|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|.+++.++|.++.++..+|.++
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence 44456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHH-HHHHHhhccc-CchHHHHHHHHHHHHHHHHHhhCCC--CHHHHH
Q 001357 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN-YFAALRNEKR-APKLEATHLEKAKELYTRVIVQHTS--NLYAAN 679 (1093)
Q Consensus 604 ~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~-y~~~~~~~~~-~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~ 679 (1093)
...|++++|+..+.+++...|..... ........ .......... ......+.+.+|+..|.+++..+|+ ++.++.
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~ 176 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHL-VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGG-CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred cccccccccccchhhHHHhccchHHH-HHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccch
Confidence 99999999999999999877652111 00000000 0000000000 0011238899999999999999998 567888
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 001357 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLART 759 (1093)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~ 759 (1093)
.+|.++...|++++|+..|++++...| .++.+|+++|.+|..+|++++|+..|+++++. .|.++.+++.+|.+
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhccccccccccc-----ccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 999999999999999999999999998 78999999999999999999999999999998 67789999999999
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001357 760 HYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1093)
Q Consensus 760 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 793 (1093)
|...|++++|+..|++++.++|++...++.++.+
T Consensus 250 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 283 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHH
Confidence 9999999999999999999999987766665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.1e-18 Score=189.10 Aligned_cols=221 Identities=12% Similarity=0.037 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADR 159 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p 159 (1093)
+-..+++.++.++...+..+ +|+.++++++.++|.+..+|+.+|.++...| ++++|+..|++++..+|
T Consensus 41 ~~~~a~~~~~~~~~~~e~~~-----------~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p 109 (315)
T d2h6fa1 41 KFRDVYDYFRAVLQRDERSE-----------RAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCCH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCchH-----------HHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 45667888899988888777 9999999999999999999999999999987 59999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
++..+|..+|.++...|++++|+..|.+++..+|.+ ..+|..+|.++..+|++++|+..|.++++++|.+..+|..++.
T Consensus 110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~ 188 (315)
T d2h6fa1 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 188 (315)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHHhhh---HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 001357 240 MDLQANE---AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1093)
Q Consensus 240 ~~~~~~~---~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1093)
++...+. .+.+.+|+..+.+++.++|.+..+++.++.++... ...++...+..++...+. +....++..++.+|
T Consensus 189 ~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~-~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 189 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS-HSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT-CCCHHHHHHHHHHH
T ss_pred HHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC-cCCHHHHHHHHHHH
Confidence 9877554 34578999999999999999999999998876544 457777888877765433 23344555555554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=5.2e-19 Score=191.74 Aligned_cols=240 Identities=10% Similarity=0.003 Sum_probs=213.5
Q ss_pred CCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChhHHH
Q 001357 519 ELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALS 597 (1093)
Q Consensus 519 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~ 597 (1093)
...|....++..++.++...+.+++|+..+.+++.++|.+..+|+.+|.++...| ++++|+.++++++..+|.+..+|.
T Consensus 37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~ 116 (315)
T d2h6fa1 37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 116 (315)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3577888999999999999999999999999999999999999999999999887 599999999999999999999999
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 001357 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1093)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 677 (1093)
.+|.++...|++++|+..|.+++...|. +..++..+|.+ +... |++++|+..|+++++.+|.+..+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~-~~~~------------~~~~~Al~~~~~al~~~p~n~~a 182 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV-IQEF------------KLWDNELQYVDQLLKEDVRNNSV 182 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH-HHHH------------TCCTTHHHHHHHHHHHCTTCHHH
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHH-HHHH------------HhhHHHHHHHHHHHHHCCccHHH
Confidence 9999999999999999999999999888 88899999999 9988 99999999999999999999999
Q ss_pred HHHHHHHHHhcCC------chhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHH
Q 001357 678 ANGAGVVLAEKGQ------FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 751 (1093)
Q Consensus 678 ~~~la~~~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 751 (1093)
|+.+|.++...+. +.+|+..+.++++..| .+..+|+++|.++...| +.++...+..++...+...++.
T Consensus 183 ~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~ 256 (315)
T d2h6fa1 183 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-----HNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPY 256 (315)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHH
T ss_pred HHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-----CchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHH
Confidence 9999999988776 4789999999999998 78999999999876544 6889999999999877777788
Q ss_pred HHHHHHHHHHhh--ccHHHHHHHHHHHHH
Q 001357 752 ILLYLARTHYEA--EQWQDCKKSLLRAIH 778 (1093)
Q Consensus 752 ~l~~la~~~~~~--g~~~~A~~~~~~al~ 778 (1093)
++..++.+|... +....+...+.+++.
T Consensus 257 ~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 257 LIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 888888887653 333334444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=4.1e-20 Score=203.69 Aligned_cols=263 Identities=8% Similarity=-0.043 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--h
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR--Y 178 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~--~ 178 (1093)
++|+.++++++..+|++..+|..++.++...+ .+.+|+.+|+.++..+|+++.+|+.+|.++...+. +
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~ 125 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccH
Confidence 48999999999999999999988887766543 47899999999999999999999999888877764 7
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1093)
.+|+..+.+++..+|.+....+..+|.++...+.++.|+..+++++.++|.+..+|..+|.++...|+ +.+|+..+.
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~---~~~A~~~~~ 202 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP---QPDSGPQGR 202 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC---CCCSSSCCS
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC---HHHHHHHHH
Confidence 89999999999999988555566788888889999999999999999999999999999999988888 777766666
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 001357 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1093)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1093)
+++.+.|..... ...+...+..+++...|.+++. ..
T Consensus 203 ~~~~~~~~~~~~-----------------------------------------~~~~~~l~~~~~a~~~~~~~l~---~~ 238 (334)
T d1dcea1 203 LPENVLLKELEL-----------------------------------------VQNAFFTDPNDQSAWFYHRWLL---GR 238 (334)
T ss_dssp SCHHHHHHHHHH-----------------------------------------HHHHHHHCSSCSHHHHHHHHHH---SC
T ss_pred HhHHhHHHHHHH-----------------------------------------HHHHHHhcchhHHHHHHHHHHH---hC
Confidence 666555433221 1223334555667777777776 45
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 339 HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
|.....+..++.++...|++.+|+..|.+++..+|.+..++..+|.++...|++++|+.+|++++.++|.....|..|+.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~ 318 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 66666777888899999999999999999999999999999999999999999999999999999999998888888887
Q ss_pred HH
Q 001357 419 LL 420 (1093)
Q Consensus 419 ~~ 420 (1093)
.+
T Consensus 319 ~~ 320 (334)
T d1dcea1 319 KF 320 (334)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.3e-18 Score=191.53 Aligned_cols=275 Identities=8% Similarity=-0.098 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1093)
++|+..+.+++..+|++..+|+..+.++... ...+..+...|++.+|+.+|++
T Consensus 46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l---------------------------~~~~~~~~~~~~~~~al~~~~~ 98 (334)
T d1dcea1 46 ESVLELTSQILGANPDFATLWNCRREVLQHL---------------------------ETEKSPEESAALVKAELGFLES 98 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------------------------HTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH---------------------------hhhcchHHHHHHHHHHHHHHHH
Confidence 5666666666666666666665555443221 2223345566778889999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 331 SVKEINKPHEFIFPYYGLGQVQLKLGD--FRSALTNFEKVLEIYPDNCETL-KALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 331 al~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
++. ..|....+++.+|.++...++ +++|+..+.+++..+|.+..++ ..+|.++...+.+++|+..+++++..+|
T Consensus 99 ~l~---~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p 175 (334)
T d1dcea1 99 CLR---VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (334)
T ss_dssp HHH---HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHH---hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 987 668888889999988887765 8999999999999999988876 5677888899999999999999999999
Q ss_pred CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccc
Q 001357 408 RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (1093)
Q Consensus 408 ~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 486 (1093)
.+..+|..+|.++ ..|++++|...+.+++.+.+.. . .....+...+..+++...|.+++.
T Consensus 176 ~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~----~~~~~~~~l~~~~~a~~~~~~~l~---------- 236 (334)
T d1dcea1 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-----L----ELVQNAFFTDPNDQSAWFYHRWLL---------- 236 (334)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-----H----HHHHHHHHHCSSCSHHHHHHHHHH----------
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-----H----HHHHHHHHhcchhHHHHHHHHHHH----------
Confidence 9999999999999 9999999988888888776652 2 233445666778888888888887
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLA 566 (1093)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 566 (1093)
..|.....+..++.++...+++.+|+..+.+++..+|.+..++..+|
T Consensus 237 ---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 283 (334)
T d1dcea1 237 ---------------------------------GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 283 (334)
T ss_dssp ---------------------------------SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------------------------hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 34555666777888888899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhccc
Q 001357 567 AIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKND 607 (1093)
Q Consensus 567 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 607 (1093)
.++...|++++|+.+|+++++++|.+...|..++..+....
T Consensus 284 ~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~ 324 (334)
T d1dcea1 284 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 324 (334)
T ss_dssp HHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999998888776533
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=4.4e-17 Score=171.88 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001357 109 HFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 109 ~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
.++.|+..+++++...+ ..+.+++.+|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34477777888876533 44568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
|++++..+|++ ..+++.+|.++..+|+++.|+..|+++++.+|.+......++.++...+.
T Consensus 94 ~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 154 (259)
T d1xnfa_ 94 FDSVLELDPTY-NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 154 (259)
T ss_dssp HHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred hhHHHHHHhhh-hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence 99999999999 77899999999999999999999999999999999888888777776655
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=2.4e-15 Score=166.33 Aligned_cols=309 Identities=14% Similarity=0.049 Sum_probs=197.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----h
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-----P 196 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-----~ 196 (1093)
.+.....+|.+++..|++++|+.+|++++...|.+ ..++..+|.+++..|++++|+..|++++...|.. .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 34556667888888888888888888888888776 3467778888888888888888888888765432 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE--------NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
...+..++.++...|++..|...+.+++.+.+. ....+..+|.++...|+ +..+...+.+++...+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHhhhhh
Confidence 344566777888888888888887777654221 12234445555555555 5555555555544433211
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----chhh
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE----FIFP 344 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~ 344 (1093)
......++..++..+...+.+..+...+..+......... ...+
T Consensus 168 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 168 --------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp --------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred --------------------------------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 1222345556666666777777777777666654332221 2234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHIYVQLGQIEKAQELLRKAAKI------DPRDAQAFI 414 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------~p~~~~~~~ 414 (1093)
+..++.++...|+++.|...+.+++...|.+ ...+..+|.++...|++++|...+++++.. .|....++.
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 295 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 295 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHH
Confidence 5566777777777777777777776655432 345666777777777777777777777643 244456777
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 415 DLGELL-ISSDTGAALDAFKTARTLLKKAGEEV----PIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 415 ~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
.+|.++ ..|++++|+..+++++.+.+..+... ....+..+...+...+..+++...
T Consensus 296 ~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 296 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 777777 77788888887777777766543321 123444455555666766666544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=3e-16 Score=165.30 Aligned_cols=140 Identities=26% Similarity=0.200 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 80 YERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR 159 (1093)
Q Consensus 80 ~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 159 (1093)
..+..+++.+|.+|..+|+.+ +|+..|++++.++|+++.+|+.+|.++...|++++|+..|++++..+|
T Consensus 34 ~~~a~~~~~~G~~y~~~g~~~-----------~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p 102 (259)
T d1xnfa_ 34 DERAQLLYERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 102 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh
Confidence 357889999999999999877 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
+++.+++.+|.++...|++.+|+..|++++..+|.+ ......++.++...+....+...........+...
T Consensus 103 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T d1xnfa_ 103 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 173 (259)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence 999999999999999999999999999999999998 66677888888888887777777666666655543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=6.3e-15 Score=162.96 Aligned_cols=284 Identities=14% Similarity=0.020 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-C
Q 001357 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD-----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-P 447 (1093)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~-----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~ 447 (1093)
.+++....|.++...|++++|+.+|++++...|.+ ..++..+|.++ ..|++++|+..|.+++.+.+..+... .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 34556666777777777777777777777776655 34566677777 77777777777777777666543211 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...+.+++.++...|++..|...+..++....... ....+....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~-----------------------------------~~~~~~~~~~ 135 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH-----------------------------------LEQLPMHEFL 135 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------------------------------CTTSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc-----------------------------------cchhhHHHHH
Confidence 45677889999999999999999999887432100 0123345567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC-------hhH
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQD-----YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY-------PNA 595 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 595 (1093)
+..+|.++...|+++.|...+..++...+. ...++...+.++...+.+..+...+.++....+.. ..+
T Consensus 136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 215 (366)
T d1hz4a_ 136 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 215 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHH
Confidence 888999999999999999999999986553 36678888899999999999999999988876432 336
Q ss_pred HHHhhhhhhcccchHHHHHHHHHhhhcCCCCC---hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhh--
Q 001357 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKD---SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ-- 670 (1093)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d---~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-- 670 (1093)
+..++.++...|+++.|...+.+++...+... ...+..+|.+ |... |++++|+..+++++..
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~-~~~~------------g~~~~A~~~~~~al~~~~ 282 (366)
T d1hz4a_ 216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA-QILL------------GEFEPAEIVLEELNENAR 282 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH-HHHT------------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHHHh
Confidence 77788899999999999999999988765432 2344556666 6666 7777777777777642
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001357 671 ----HTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 671 ----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (1093)
.|....++..+|.+|...|++++|+..|+++++..+
T Consensus 283 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 283 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 234455666677777777777777777777766543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.5e-12 Score=138.36 Aligned_cols=229 Identities=13% Similarity=0.107 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK--------------GEVEQASSAFKIVLEA-DRDNVPALLGQACV 171 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~a~~~la~~ 171 (1093)
...+..+..+|++|+...|.++..|+..+..+... +.+++|..+|++++.. .|.+...|+..+.+
T Consensus 29 ~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 29 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556788899999999999999999887765443 3458899999999974 78888899999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hhhHHhH
Q 001357 172 EFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-ANEAAGI 250 (1093)
Q Consensus 172 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~~~~~~ 250 (1093)
+...|+++.|..+|++++...|.+...++..++.+..+.|+++.|+.+|.+++...|.+...+...+.+... .|+ .
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~---~ 185 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD---K 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC---H
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC---H
Confidence 999999999999999999999987666788999999999999999999999999999999998888876544 456 8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK-SHSYYNLARSYHSKGDYEKAGLYYM 329 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1093)
+.|...|++++..+|.++..+..++.++...|+++.|..+|++++...+..|.. ...|..........|+.+.+..+++
T Consensus 186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999999999999999999999999999999999999999988776555432 3466666777777788888888888
Q ss_pred HHHHhcCCC
Q 001357 330 ASVKEINKP 338 (1093)
Q Consensus 330 ~al~~~~~~ 338 (1093)
++.+.++..
T Consensus 266 r~~~~~~~~ 274 (308)
T d2onda1 266 RRFTAFREE 274 (308)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHCccc
Confidence 887765543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.5e-13 Score=122.06 Aligned_cols=111 Identities=16% Similarity=0.240 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
-+...|..++..|+|++|+.+|.+++..+|+++.+|..+|.++...|++.+|+..|.+++..+|.+ +.+++.+|.++..
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999 6789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 210 LGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
+|++++|+..|+++++++|+++.++..++.+.
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999999999988887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=1.9e-12 Score=139.37 Aligned_cols=227 Identities=9% Similarity=0.018 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHH-cCCChhHHHHhhhhhhcc
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKAR--------------NNLQLSIELVNEALKV-NGKYPNALSMLGDLELKN 606 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 606 (1093)
..+..+|++++...|.++..|+..+..+... +..++|..+|++++.. .|.+..+|..++.++...
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4566789999999999999998888765433 3457889999999975 788889999999999999
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001357 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1093)
Q Consensus 607 g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 686 (1093)
|+++.|...|.+++...|......+...+.+ .... +.++.|..+|.+++...|.+...+...+....
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~-~~~~------------~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~ 179 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRA------------EGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH-HHHH------------HCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHH-HHHc------------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999998887555667777777 6666 89999999999999999999988888887654
Q ss_pred -hcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhh
Q 001357 687 -EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEA 763 (1093)
Q Consensus 687 -~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~ 763 (1093)
..|+.+.|..+|+.++...| .++.+|..++..+...|+++.|..+|++++...+.++. ..+|......-...
T Consensus 180 ~~~~~~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~ 254 (308)
T d2onda1 180 YCSKDKSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence 46899999999999999998 78999999999999999999999999999998765543 56777778877889
Q ss_pred ccHHHHHHHHHHHHHhCCCCcch
Q 001357 764 EQWQDCKKSLLRAIHLAPSNYTL 786 (1093)
Q Consensus 764 g~~~~A~~~~~~al~~~P~~~~~ 786 (1093)
|+...+.++++++.++.|.+...
T Consensus 255 G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 255 GDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CCHHHHHHHHHHHHHHCcccccc
Confidence 99999999999999999987554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=7.5e-14 Score=160.86 Aligned_cols=230 Identities=12% Similarity=0.011 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhh
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASD 621 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 621 (1093)
-+|+++|++++.+.|+.+++++.+|.++..+|++.+| |++++..+|.....+...+.+. ...+..++..++....
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999876 8899999987666554333332 2235677888887776
Q ss_pred cCCCCC--hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHH
Q 001357 622 ATDGKD--SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFT 699 (1093)
Q Consensus 622 ~~~~~d--~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 699 (1093)
.....+ ......++.+ +... +.|..|+..|.+.+..+|.+..++..+|.++...|+...|+..+.
T Consensus 78 ~~~~~~~~~~~~~~~~~l-~~a~------------~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFL-EAAS------------GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp CSSCTTTTHHHHHHHHHH-HHHH------------HHHHHHHHHHTC-------------------------------CC
T ss_pred cccCccHHHHHHHHHHHH-HHHH------------HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 543322 2222223434 4444 889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 700 QVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 700 ~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
+++...| ..+++++|.++...|++++|+.+|++|+.. .|.+...++.||.++...|++.+|+.+|.+++..
T Consensus 145 ~al~~~~-------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 145 SSCSYIC-------QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHhCCCH-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9988764 578999999999999999999999999999 6777899999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHH
Q 001357 780 APSNYTLRFDAGVAMQKFS 798 (1093)
Q Consensus 780 ~P~~~~~~~~la~~~~~~~ 798 (1093)
.|..+.++.||+.++.+..
T Consensus 216 ~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 216 KFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp SBCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999998876543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.2e-12 Score=122.23 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.+...|..++..|+|++|+.+|.+++..+|+++.+|+.+|.+++..|++++|+..|.++++.+|.+ ..+++.+|.++..
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHHHH
Confidence 355679999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
+|++++|+..|++++.++|++..++..++.+...
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~ 124 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 124 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998888766543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.8e-12 Score=116.32 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001357 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA 164 (1093)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 164 (1093)
-+...|..++..|+.. +|+.+|++++..+|.++.+|..+|.++...|++++|+..|.+++..+|+++.+
T Consensus 5 ~l~~~g~~~~~~g~~~-----------eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 73 (117)
T d1elwa_ 5 ELKEKGNKALSVGNID-----------DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG 73 (117)
T ss_dssp HHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhH
Confidence 3455678888888766 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
|+.+|.++..+|++++|+..|++++..+|++ +.++..++.+.
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~l~ 115 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHh
Confidence 9999999999999999999999999999999 67777777664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.2e-13 Score=158.99 Aligned_cols=224 Identities=12% Similarity=0.041 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 146 QASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 146 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
+|.++|++++.+.|+.+.+++.+|.++..+|++.+| |++++..+|.. ...+.. ...+++. .+..++..++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~-a~~~~~-e~~Lw~~-~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEY-ALDKKV-EQDLWNH-AFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHH-HHHHTH-HHHHHHH-HTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhh-HHHHhH-HHHHHHH-HHHHHHHHHHHhcc
Confidence 567777777777777777777777777777777665 67777776654 222211 1122211 23445555655554
Q ss_pred hCC--CcHH-HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC
Q 001357 226 LDP--ENVE-ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1093)
Q Consensus 226 ~~p--~~~~-a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 302 (1093)
... +... ....++.+....+. |..++..+.+++.++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~---Y~~ai~~l~~~~~l~~~~~---------------------------------- 120 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGF---YTQLLQELCTVFNVDLPCR---------------------------------- 120 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHH---HHHHHHHHTC-------------------------------------------
T ss_pred cccCccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCChhhH----------------------------------
Confidence 322 1111 11222333333333 5555555555555544444
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1093)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1093)
..+..+|..+...|++..|+..+.+++.. ....+++.+|.++...|++++|+.+|.+++.++|++..+++.+
T Consensus 121 ---~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L 192 (497)
T d1ya0a1 121 ---VKSSQLGIISNKQTHTSAIVKPQSSSCSY-----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL 192 (497)
T ss_dssp -------------------------CCHHHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred ---HHHHHhHHHHHhCCCHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 55566666677777777777777766652 2235678889999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
|.++...|++.+|+.+|.+++...|..+.++.+|+.++
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.9e-12 Score=123.65 Aligned_cols=127 Identities=18% Similarity=0.199 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ 212 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 212 (1093)
..|..++..|+|+.|+..|.++ .|.++.+|+.+|.+++.+|++++|+..|+++++++|++ +.+++.+|.++.++|+
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh-hhhHHHHHHHHHhhcc
Confidence 4455666666666666665542 34455566666666666666666666666666666665 4555666666666666
Q ss_pred HHHHHHHHHHHHhhCCCc----------------HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 213 LGKARQAFQRALQLDPEN----------------VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 213 ~~~A~~~~~~al~~~p~~----------------~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
+++|+..|++++...|.+ ..+++.+|.++...|+ +.+|+..|..++.+.|.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~---~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---WKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCC
Confidence 666666666665543322 2444555555555555 55555555555555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-11 Score=122.12 Aligned_cols=129 Identities=15% Similarity=0.131 Sum_probs=115.3
Q ss_pred HHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001357 88 ALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG 167 (1093)
Q Consensus 88 ~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 167 (1093)
..|..+...|.+. .|+..|.++ .|.++.+|+.+|.+|+..|++++|+..|+++++++|+++.+|+.
T Consensus 10 ~~g~~~~~~~d~~-----------~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~ 75 (192)
T d1hh8a_ 10 NEGVLAADKKDWK-----------GALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 75 (192)
T ss_dssp HHHHHHHHTTCHH-----------HHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHCCCHH-----------HHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH
Confidence 3477777777666 899999864 56788999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 168 QACVEFNRGRYSDSLEFYKRALQVHPSC---------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~p~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
+|.++..+|+|++|+..|++++...|.+ ...+++.+|.++..+|++++|+..|.+++.+.|..
T Consensus 76 ~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 76 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999876544 13568899999999999999999999999999874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=4.4e-12 Score=135.02 Aligned_cols=215 Identities=13% Similarity=0.126 Sum_probs=162.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHH
Q 001357 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1093)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1093)
.+.|...|..|..+|+|++|+..+++++..... .+...+-...+..+|.+|..+|... +|+..|++
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~---~~~~~~~a~~~~~~g~~y~~~~~~~-----------~A~~~~~~ 102 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKK---AGNEDEAGNTYVEAYKCFKSGGNSV-----------NAVDSLEN 102 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHhCCcH-----------HHHHHHHH
Confidence 457999999999999999999999998754211 1223355678888999999888777 88888888
Q ss_pred HHhcCCCC------hhhHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 120 ASRIDMHE------PSTWVGKGQLLLA-KGEVEQASSAFKIVLEADRD------NVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 120 a~~~~p~~------~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
++.+.+.. ..++..+|.++.. .|++++|+.+|.+++...+. ...++..+|.++...|+|.+|+..|+
T Consensus 103 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~ 182 (290)
T d1qqea_ 103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHH
Confidence 88776544 4567788888866 59999999999999876432 24568889999999999999999999
Q ss_pred HHHHhCCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----HHHHHHHHHHhhhHHhHHHHHH
Q 001357 187 RALQVHPSCP------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-----LVALAVMDLQANEAAGIRKGME 255 (1093)
Q Consensus 187 ~al~~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-----~~~la~~~~~~~~~~~~~~Al~ 255 (1093)
+++...|... ...++..|.|+...|++..|...|.++++++|..... +..+... +..++.+.+.+|+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a-~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA-VNEGDSEQLSEHCK 261 (290)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHH-HHTTCTTTHHHHHH
T ss_pred HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 9999987762 2456788999999999999999999999999875543 2223333 33344455889999
Q ss_pred HHHHHHHhCCCcHH
Q 001357 256 KMQRAFEIYPYCAM 269 (1093)
Q Consensus 256 ~~~~al~~~p~~~~ 269 (1093)
.|.++.+++|....
T Consensus 262 ~y~~~~~lD~~~~~ 275 (290)
T d1qqea_ 262 EFDNFMRLDKWKIT 275 (290)
T ss_dssp HHTTSSCCCHHHHH
T ss_pred HHHHHhhcCHHHHH
Confidence 99887777764443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.2e-11 Score=118.15 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
++..-+...|..|+..|++. +|+.+|++++.++|+++.+|+.+|.+++..|++++|+..|+++++.+|+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~-----------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~ 76 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYE-----------NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 76 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCHH-----------HHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc
Confidence 45566777888888888766 9999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
++.+|..+|.++...|++++|+..|++++.++|++ ..++..++.+..
T Consensus 77 ~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~ 123 (159)
T d1a17a_ 77 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNK 123 (159)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 666666666643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.32 E-value=7.2e-12 Score=133.31 Aligned_cols=206 Identities=14% Similarity=0.134 Sum_probs=146.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIY------PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFID 415 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~------~~~~~~ 415 (1093)
.|.+|...|+|++|+.+|.+++.+. +....++..+|.+|...|++++|+..|.+++.+.+.. ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 3567778888888888888887763 2234678888999999999999999999888765433 567778
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhh
Q 001357 416 LGELL--ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492 (1093)
Q Consensus 416 la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 492 (1093)
++.++ ..++++.|+.+|.+++.+.+..+... ...++.++|.++...|+|++|+.+|++++...+....
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~--------- 193 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL--------- 193 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT---------
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh---------
Confidence 88877 46999999999999998877653322 2467899999999999999999999999875321100
Q ss_pred hhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHH-----HHHHHH
Q 001357 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA-----YLRLAA 567 (1093)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~la~ 567 (1093)
........++..+.++...|++..|...+.+++..+|....+ ...++.
T Consensus 194 ---------------------------~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~ 246 (290)
T d1qqea_ 194 ---------------------------SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID 246 (290)
T ss_dssp ---------------------------TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHH
T ss_pred ---------------------------hhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHH
Confidence 122344567788889999999999999999999888865433 233333
Q ss_pred HHHH--cCCHHHHHHHHHHHHHHc
Q 001357 568 IAKA--RNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 568 ~~~~--~g~~~~A~~~~~~al~~~ 589 (1093)
.+.. .+.+.+|+..|.++.+++
T Consensus 247 a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 247 AVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcC
Confidence 3332 234677777776555444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=3.6e-12 Score=127.54 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=98.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
+...+...|..++..|+|++|+..|.+++..+|.++.+|..+|.+|...|+|++|+..|.+++.++|++ ..+|+.+|.+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999999999999 7789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
|..+|++++|+..|++++.++|++...+.
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 110 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 99999999999999999998886544433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=8.9e-11 Score=112.99 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
..+...|..++..|+|++|+.+|.+++...|.. ..++..+|.+|++.|+|++|+..+++++.++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 355678899999999999999999998887643 23456677888888888888888888888888
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
++ +.+++.+|.|+..+|++++|+..|+++++++|+++.+...++.+......
T Consensus 94 ~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 94 NN-EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred cc-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 77 66778888888888888888888888888888888877777777655544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=7.9e-12 Score=125.00 Aligned_cols=107 Identities=23% Similarity=0.323 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
++...+...|..++..|+|++|+..|.+++..+|.+ +.+|..+|.||..+|++++|+..|.++++++|+++.+|+.+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 356778899999999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
++...|+ +++|+..|++++.++|.+...
T Consensus 81 ~~~~l~~---~~~A~~~~~~al~l~p~~~~~ 108 (201)
T d2c2la1 81 CQLEMES---YDEAIANLQRAYSLAKEQRLN 108 (201)
T ss_dssp HHHHTTC---HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCC---HHHHHHHHHHHHHhCcccHHH
Confidence 9999999 999999999999988865433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.25 E-value=3e-11 Score=107.09 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..++.+|.+++..|++.+|+..|++++..+|+++.+|..+|.++...|++.+|+..|++++..+|.+ ..+++.+|.+|.
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~ 95 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT 95 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHH
Confidence 4567788888888888888888888888888888888888888888888888888888888888888 677888888888
Q ss_pred HcCCHHHHHHHHHHHH
Q 001357 209 KLGQLGKARQAFQRAL 224 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al 224 (1093)
.+|++++|+..|++.|
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 8888888888888765
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.1e-10 Score=110.26 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE------------FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1093)
..+...|..++..|+|++|+..|.+++..++..+. ...++.++|.+|++.|++++|+..+++++.++|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p 93 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 93 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc
Confidence 34455666666666666666666666664432222 124577899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001357 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1093)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (1093)
+++.+++.+|.+|..+|++++|+..|++++.++|+++.+...++.+. ..+..
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887 44433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=5.2e-11 Score=106.62 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHH
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSCP-GAIRLGIGLCRY 208 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~p~~~-~~~~~~la~~~~ 208 (1093)
.++..++..+++++|...|++++..+|.++.+++.+|.++++.+ ++.+|+.+|++++..+|... ..+++.+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999998754 55679999999998887652 357889999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
.+|++++|+.+|+++++++|++..+...++.+....
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877765443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.4e-11 Score=110.42 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=90.0
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh---cCHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 001357 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQ---GNFALAMKMYQNCLRKFYYNTDAQILLY 755 (1093)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~l~~ 755 (1093)
..++..+...+++.+|...|++++...| .++.+++++|+++... +++.+|+.+|++++...+.+..+.+++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-----~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-----VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-----CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 3566677778888888889999888887 7888999999888764 4556789999888876322222568889
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 001357 756 LARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1093)
Q Consensus 756 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 797 (1093)
||.+|+..|++++|+++|++++.++|++..++..++.|....
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887777765443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.19 E-value=2.2e-10 Score=107.97 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------PALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
.+...|..++..|+|.+|+..|.+++...|... .++..+|.+++++|++.+|+..|.+++..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 456678888999999999999999987655321 2344455555555666666666666665555
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.+ ..+++.+|.++..+|++++|+..|.++++++|++..+...+..+..
T Consensus 99 ~~-~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 99 NN-VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp TC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hh-hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 55 4455555666666666666666666666556655555555544433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.18 E-value=4.6e-09 Score=109.52 Aligned_cols=231 Identities=17% Similarity=0.201 Sum_probs=138.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
||.+++.+|..++..|++.+|+.+|+++.+. .++.+++.+|.+|.. ..++..|..++..+.... . +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~-~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y-SNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--c-cchhhc
Confidence 4678888888888888888888888888764 478888888888877 668888888888877654 3 344566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 203 IGLCRYK----LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE-AAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 203 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~-~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
+|.++.. ..+...|...|+.+....+ ..+...++..+..... ......++..+..... +.+...+..|+..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~ 151 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSL 151 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhh
Confidence 7766654 3567778888887776543 4444555544443111 1124445555544433 2334444445544
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH---
Q 001357 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK--- 354 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~--- 354 (1093)
+..... ...+...+..++..+.+ .....+++.+|.++..
T Consensus 152 ~~~~~~---------------------------------~~~~~~~~~~~~~~a~~-----~g~~~A~~~lg~~y~~g~~ 193 (265)
T d1ouva_ 152 YDAGRG---------------------------------TPKDLKKALASYDKACD-----LKDSPGCFNAGNMYHHGEG 193 (265)
T ss_dssp HHHTSS---------------------------------SCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTCS
T ss_pred hccCCC---------------------------------cccccccchhhhhcccc-----ccccccccchhhhcccCcc
Confidence 443110 12344555555555543 2344555666666555
Q ss_pred -cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 001357 355 -LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ----LGQIEKAQELLRKAAKID 406 (1093)
Q Consensus 355 -~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~l~~~ 406 (1093)
..+++.|+.+|.++... .++.+++.||.+|.. ..++.+|+.+|+++....
T Consensus 194 ~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 194 ATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 44566666666666554 345666666666654 235666666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.16 E-value=5.6e-10 Score=107.12 Aligned_cols=117 Identities=18% Similarity=0.260 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---------------VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
..+...|..++..|+|.+|+..|.+++...|.. ..++..+|.|++.+|+|.+|+..+++++.++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 356778999999999999999999988754332 23455677777777777777777777777777
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
.+ ..+++.+|.++..+|++++|+..|.+++.++|++..++..++.+....+.
T Consensus 96 ~~-~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 96 AN-EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 77 56677777777777777777777777777777777777777766655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.16 E-value=1.4e-08 Score=105.81 Aligned_cols=223 Identities=17% Similarity=0.197 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 305 SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIYPDNCETLK 380 (1093)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~ 380 (1093)
+.+++.+|..++..+++.+|+.+|+++.+ .....+++.||.+|.. ..++..|..++..+... .++.+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~-----~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACD-----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhh
Confidence 46777788888888888888888888765 2456777788888776 56778888888777653 4667777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h----cCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 001357 381 ALGHIYVQ----LGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I----SSDTGAALDAFKTARTLLKKAGEEVPIEVL 451 (1093)
Q Consensus 381 ~la~~~~~----~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 451 (1093)
.+|.++.. ..+...|...++.+....+ ..+...++..+ . ......++..+...... .....+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~ 145 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGC 145 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc-------cccchh
Confidence 77777664 3567777777777766543 34444454444 1 23344444444433221 135566
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 452 NNIGVIHFE----KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 452 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
+.+|.++.. ..+...+..++..+... .++.+
T Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~---------------------------------------------g~~~A 180 (265)
T d1ouva_ 146 TILGSLYDAGRGTPKDLKKALASYDKACDL---------------------------------------------KDSPG 180 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------------------------------TCHHH
T ss_pred hhhhhhhccCCCcccccccchhhhhccccc---------------------------------------------ccccc
Confidence 666766664 34455555555555442 24556
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcC
Q 001357 528 LFNLARLLEQ----IHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA----RNNLQLSIELVNEALKVNG 590 (1093)
Q Consensus 528 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 590 (1093)
.+++|.++.. ..++..|+.+|.++... .++.+++.||.++.. ..++.+|..+|+++.....
T Consensus 181 ~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 181 CFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 6666666655 44666666666666554 345566666666654 2356666666666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.16 E-value=2.1e-10 Score=101.44 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
.++.+|.++++.|++.+|+..|++++..+|++ +.+++.+|.++...|++++|+..|.++++++|++..+|+.+|.++..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccccc-chhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 35677888888888888888888888888888 77788888888888888888888888888888888888888888888
Q ss_pred hhhHHhHHHHHHHHHHHH
Q 001357 244 ANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al 261 (1093)
.|+ +.+|+..+++.+
T Consensus 97 ~g~---~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHN---ANAALASLRAWL 111 (112)
T ss_dssp HHH---HHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHh
Confidence 888 888888888764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.15 E-value=7.1e-10 Score=106.37 Aligned_cols=132 Identities=16% Similarity=0.213 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC------------chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE------------FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP 373 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 373 (1093)
..+...|..++..|+|.+|+..|.+++..++.... ...++.++|.+|..+|++.+|+..+++++.++|
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 44556667777777777777777776654432222 224577899999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH-HHHHHHHHHHH
Q 001357 374 DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG-AALDAFKTART 437 (1093)
Q Consensus 374 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~-~A~~~~~~a~~ 437 (1093)
.+..+++.+|.++...|++++|+..|.+++.++|++..++..++.+. ..+.+. .....|.++..
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998887 444332 33444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.13 E-value=4.2e-10 Score=105.96 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---------------GAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
+..+...|..++..|+|.+|+..|.+++...|... ..++.++|.||+++|++++|+..+.+++.+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~ 96 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 96 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence 34567789999999999999999999998766441 235778999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
+|.++.+|+.+|.++...|+ +.+|+..|.+++.++|+++.+...+..+..
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~---~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGF---LEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999988887766644
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.13 E-value=3.8e-10 Score=108.62 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEA----------------DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
+...|..++..|+|.+|+..|.+++.. .|.+..++..+|.++.+.|+|++|+..|.++++++|+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 345677778888888888888877653 2334445555666666666666666666666666665
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
+ +.+++.+|.+|..+|+++.|+..|+++++++|++..+...++.+...
T Consensus 110 ~-~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 110 N-TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred h-hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5 45556666666666666666666666666666666555555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.12 E-value=2.4e-10 Score=110.00 Aligned_cols=136 Identities=18% Similarity=0.077 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
.....|..|+..|+|.+|+..+.+++...... .+........
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~--------------------------------------~~~~~~~~~~ 70 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS--------------------------------------RAAAEDADGA 70 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------HHHSCHHHHG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh--------------------------------------hhhhhhHHHH
Confidence 35678999999999999999998875321000 1111112233
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
..+|....++..+|.+++..|+|++|+..|.++++.+|+++.+|+.+|.++..+|++++|+..|++++.++|++ ..++.
T Consensus 71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~ 149 (169)
T d1ihga1 71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQA 149 (169)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHH
Confidence 44566677888899999999999999999999999999999999999999999999999999999999999998 66777
Q ss_pred HHHHHHHHcCCHHHH
Q 001357 202 GIGLCRYKLGQLGKA 216 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A 216 (1093)
.++.+...+....++
T Consensus 150 ~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 150 ELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788877666554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.11 E-value=1.6e-10 Score=107.61 Aligned_cols=116 Identities=17% Similarity=0.136 Sum_probs=79.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001357 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG----------EVEQASSAFKIVLEADRDNVPALLGQACVEFN 174 (1093)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 174 (1093)
+|.+.|++|+..|++++.++|+++.+++.+|.++...+ .+++|+..|+++++++|+++.+|+.+|.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 45677889999999999999999999999999988654 45677777777777777777777777777766
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
.|++. +.. . ...+.+..|+.+|++++.++|++..++..|+.+....
T Consensus 88 ~g~~~-------------~~~-~----------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~ 133 (145)
T d1zu2a1 88 FAFLT-------------PDE-T----------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP 133 (145)
T ss_dssp HHHHC-------------CCH-H----------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred cccch-------------hhH-H----------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHH
Confidence 55320 000 0 0011245566666666666666666666666554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=5.2e-10 Score=101.66 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------HHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP------GAIRLGI 203 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~~l 203 (1093)
.+-.+|..++..|+|++|+.+|.+++..+|+++.++..+|.+++..|+|++|+..|.+++.++|.+. ..+++.+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999987763 2467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
|.++..++++++|+.+|.+++..+|+ +...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 115 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRT-PDVL 115 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-HHHH
Confidence 88999999999999999999988774 4443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.07 E-value=3.5e-10 Score=105.19 Aligned_cols=126 Identities=14% Similarity=0.035 Sum_probs=93.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHH
Q 001357 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1093)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (1093)
|-+.+.|++|+..|++++..+|+++.+++.+|.++...+++..+.. ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHH
Confidence 3455667888888888888888888888888877776655544332 123346777
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 001357 218 QAFQRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1093)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1093)
..|+++++++|+++.+++.+|.++...|. ...+.+|+..|++++.++|++..++..|+......+.+.++.
T Consensus 62 ~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 62 TKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777776653 134899999999999999999999999998877666666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.7e-09 Score=96.81 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-----HH
Q 001357 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQ 751 (1093)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~ 751 (1093)
.+..+|..+...|++++|+.+|+++++..| .++.++.++|.+|..+|+|.+|+..|++++...|.... ..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456789999999999999999999999998 78899999999999999999999999999988655444 45
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
++..+|.++...+++++|+.+|.+++..+|+.
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 77889999999999999999999999888754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.7e-09 Score=90.67 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchh
Q 001357 713 MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 787 (1093)
+++.++.+|.+++.+|+|.+|+.+|++|++.++..+. +.++.+||.+|++.|++++|+.+|++++.++|+++.++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 4677899999999999999999999999998765432 78999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 001357 788 FDAGVAMQK 796 (1093)
Q Consensus 788 ~~la~~~~~ 796 (1093)
+|++.+.+.
T Consensus 84 ~Nl~~~~~~ 92 (95)
T d1tjca_ 84 GNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999986443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.69 E-value=4.8e-08 Score=91.90 Aligned_cols=113 Identities=11% Similarity=-0.011 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCC-------CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC--
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV-------QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT-- 748 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-- 748 (1093)
..+.|..+...|++++|+..|+++++..|..+.. ....+|.++|.+|..+|++++|+..+++++..++...
T Consensus 12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~ 91 (156)
T d2hr2a1 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 91 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence 3445888889999999999999999998753211 1246789999999999999999999999998764211
Q ss_pred --C-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHH
Q 001357 749 --D-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1093)
Q Consensus 749 --~-----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 790 (1093)
+ ..+++.+|.+|...|++++|+..|++++++.|......-..
T Consensus 92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~ 140 (156)
T d2hr2a1 92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 140 (156)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHH
Confidence 1 44688999999999999999999999999988665444333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=5.7e-08 Score=82.21 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
+...+.+|.+++..|+|.+|+.+|++++...|.. ...++..+|.++.++|++++|+..|+++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3445666777777777777777777776664432 2456777788888888888888888888888888777777
Q ss_pred HHHHHH
Q 001357 236 ALAVMD 241 (1093)
Q Consensus 236 ~la~~~ 241 (1093)
.++.+.
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.66 E-value=5.6e-08 Score=91.44 Aligned_cols=107 Identities=15% Similarity=0.042 Sum_probs=87.4
Q ss_pred HHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHhcCCchhHHH
Q 001357 629 YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN------------LYAANGAGVVLAEKGQFDVSKD 696 (1093)
Q Consensus 629 ~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------------~~a~~~la~~~~~~g~~~~A~~ 696 (1093)
+.++..|+. ++.. |++++|+..|++++.+.|+. ..+++++|.+|...|++++|+.
T Consensus 10 ~~~l~~g~~-~~~~------------g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~ 76 (156)
T d2hr2a1 10 YLALSDAQR-QLVA------------GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH 76 (156)
T ss_dssp HHHHHHHHH-HHHH------------TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhH
Confidence 444455777 7777 99999999999999988764 3578899999999999999999
Q ss_pred HHHHHHHHhcCCCC------CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC
Q 001357 697 LFTQVQEAASGSVF------VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT 748 (1093)
Q Consensus 697 ~~~~~~~~~p~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 748 (1093)
.+++++...|.... +....+++++|.+|..+|++++|+..|++++..++...
T Consensus 77 ~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 77 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 99999988753111 11344789999999999999999999999999876443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.54 E-value=3.3e-08 Score=101.20 Aligned_cols=123 Identities=11% Similarity=-0.037 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
|++++|+..|.++++.+|.++.++..+|.+++..|++++|+..|+.++..+|++..++..++.++...+...++...+..
T Consensus 10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~ 89 (264)
T d1zbpa1 10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAAT 89 (264)
T ss_dssp TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhh
Confidence 44446666666666666666666666666666666666666666666666666666666665555544444443333222
Q ss_pred HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.....+......++..+.++...|++++|...+.++.+..|..
T Consensus 90 ~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~ 132 (264)
T d1zbpa1 90 AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 132 (264)
T ss_dssp EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred hhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 2211111113334445555555566666666666655555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.48 E-value=9.1e-08 Score=97.88 Aligned_cols=129 Identities=10% Similarity=0.007 Sum_probs=82.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHH
Q 001357 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGK 215 (1093)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 215 (1093)
.-++..|++++|+..|+++++.+|+++.++..++.+++..|++++|+..|+++++++|+. ...+..++.++...+...+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhccccHH
Confidence 445666777777777777777777777777777777777777777777777777777776 4455566666655555544
Q ss_pred HHHHHHHHHh-hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 216 ARQAFQRALQ-LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 216 A~~~~~~al~-~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
+...+.+... ..|.....+...+.++...|+ +++|+..+.++....|..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd---~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQD---YEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhcCCCCC
Confidence 4433332221 234444555556666666666 6777777777776666544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.34 E-value=3.8e-06 Score=80.04 Aligned_cols=94 Identities=23% Similarity=0.158 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHcCChHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV----------------------PALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
..++..|..+...|++++|...|.+++.+.+..+ .++..++.++...|++.+|+..++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 3456667777777777777777777777665432 334444444444444444444444
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+++..+|.+ ..+|..++.++..+|++.+|+..|.++
T Consensus 92 ~al~~~P~~-e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 92 ALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444444444 344444444444444444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.18 E-value=1.1e-05 Score=76.76 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCCh----------------------hhHHHHHHHH
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEP----------------------STWVGKGQLL 138 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~----------------------~~~~~~a~~~ 138 (1093)
++...+...|......|+.+ +|+..|.+++.+.+... .++..++.++
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e-----------~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~ 77 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFE-----------QASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888877 89999999999877542 4567889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++..
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999844
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=1.5e-05 Score=68.28 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHh---cCHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhh
Q 001357 713 MPDVWINLAHVYFAQ---GNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 788 (1093)
.+.+.|++||++.+. .+..+|+.+|+.+++. .+.+ ...+++||.+|++.|+++.|+.+++++++++|+|..+..
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 478999999999975 4567999999999986 4444 589999999999999999999999999999999976655
Q ss_pred HHHHHHH
Q 001357 789 DAGVAMQ 795 (1093)
Q Consensus 789 ~la~~~~ 795 (1093)
....|-.
T Consensus 112 L~~~Ie~ 118 (124)
T d2pqrb1 112 LKSMVED 118 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.82 E-value=8.6e-05 Score=63.52 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 162 VPALLGQACVEFNRG---RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g---~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
+.+.+..|.++.+.. +..+|+.+++.++..+|......++.+|.+|+++|+++.|+.+++++|+++|+|..+....-
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~ 114 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 114 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence 445555555555443 23456666666666555554455566666666666666666666666666666665544433
Q ss_pred H
Q 001357 239 V 239 (1093)
Q Consensus 239 ~ 239 (1093)
.
T Consensus 115 ~ 115 (124)
T d2pqrb1 115 M 115 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.79 E-value=0.00017 Score=64.63 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNF 730 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~ 730 (1093)
.++++|+.+|+++.+.+ ++.+.+.++. ....+.++|+.+|+++.+. .++.+.++||.+|.. ..++
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~-------g~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc-------cchhhhhhHHHhhhhccccchhh
Confidence 78999999999998874 5566666664 3456889999999999875 478999999999986 4578
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhCC
Q 001357 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYE----AEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~~al~~~P 781 (1093)
.+|+.+|+++... .++...+.||.+|.. ..+...|..+|+++.++..
T Consensus 76 ~~A~~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 76 RKAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999999999875 568899999999987 4689999999999988764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.57 E-value=0.00071 Score=60.30 Aligned_cols=112 Identities=16% Similarity=0.133 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRYSDSL 182 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~Al 182 (1093)
..++.+|+.+|.++.... ++.+.+.++. ....++++|+..|+++... .++.+.+.+|.+|.. ..++.+|+
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence 357889999999998764 5666776664 3456888999999988764 578888889988876 46788889
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 001357 183 EFYKRALQVHPSCPGAIRLGIGLCRYK----LGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 183 ~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 227 (1093)
.+|+++.... + +...+.+|.+|.. ..++.+|+.+|+++.+..
T Consensus 80 ~~~~~aa~~g--~-~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN--D-QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT--C-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC--c-chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 9988887754 3 4567778888876 457888888888887654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.17 Score=54.85 Aligned_cols=54 Identities=13% Similarity=-0.021 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHh
Q 001357 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAA 619 (1093)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (1093)
..+..+...|....|...+..++.. .++.-...++.+....|.++.|+....++
T Consensus 386 ~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 386 ARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3455666778888887777666543 34556667777778888888888776665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.31 Score=52.71 Aligned_cols=371 Identities=11% Similarity=-0.020 Sum_probs=207.8
Q ss_pred HHHHHHhCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 151 FKIVLEADRDNVPALLGQ---ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 151 ~~~al~~~p~~~~a~~~l---a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
+...+...|+.|...... ...+...+++...+..| ...|.+ ....+.++.++...|+...|...+..+....
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~-~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGT-TEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSS-HHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 455667788887664333 23455667776544333 234555 5666778888888999988888877776554
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH
Q 001357 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1093)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1093)
+..+.....+-... .....-.+..+...+...+..|++..|..++..+- +.....
T Consensus 133 ~~~p~~c~~l~~~~-------------------~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~------~~~~~~ 187 (450)
T d1qsaa1 133 KSQPNACDKLFSVW-------------------RASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMP------ADYQTI 187 (450)
T ss_dssp SCCCTHHHHHHHHH-------------------HHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC------GGGHHH
T ss_pred CCCchHHHHHHHHH-------------------HhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCC------hhHHHH
Confidence 44333222222222 22222334444455556666677776666554221 111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH---
Q 001357 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH--- 384 (1093)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~--- 384 (1093)
...+..+......+ ... .... ............+..-....+...|...+.......+.....+.....
T Consensus 188 ~~a~~~l~~~p~~~---~~~----~~~~-~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a 259 (450)
T d1qsaa1 188 ASAIISLANNPNTV---LTF----ARTT-GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVA 259 (450)
T ss_dssp HHHHHHHHHCGGGH---HHH----HHHS-CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHhH---HHH----HhcC-CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHH
Confidence 11111111111111 111 1111 111111223334444445568889999988887766555543333332
Q ss_pred -HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 385 -IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 385 -~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
.+...+....+...+........+.......++..+..+++..+...+..+.. .........+-+|..+...|+
T Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~-----~~~~~~r~~YW~gRa~~~~G~ 334 (450)
T d1qsaa1 260 WRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPM-----EAKEKDEWRYWQADLLLERGR 334 (450)
T ss_dssp HTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT-----TGGGSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCc-----ccccHHHHHHHHHHHHHHcCC
Confidence 23344667888888877766555444444444544577899888777654321 112247788999999999999
Q ss_pred HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhh-hccCCCCcCCCCc---hHHHHHHHHHHHHhcC
Q 001357 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHR-FENDGNHVELPWN---KVTVLFNLARLLEQIH 539 (1093)
Q Consensus 464 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~---~~~~~~~la~~~~~~g 539 (1093)
.+.|..+|..+....... ++.....+.. ..-....+...+. .....+..+..+...|
T Consensus 335 ~~~A~~~~~~~a~~~~fY-------------------G~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g 395 (450)
T d1qsaa1 335 EAEAKEILHQLMQQRGFY-------------------PMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWN 395 (450)
T ss_dssp HHHHHHHHHHHHTSCSHH-------------------HHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhcCCChH-------------------HHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcC
Confidence 999999999887632111 1111000000 0000001111111 1223445677889999
Q ss_pred ChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 540 DTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 540 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
....|...+..++... +..-...++.+....|.++.|+....++
T Consensus 396 ~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 396 LDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 9999999998877543 3567778899999999999999777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.77 E-value=0.21 Score=51.03 Aligned_cols=271 Identities=12% Similarity=0.073 Sum_probs=142.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1093)
...|..++..|.|+.|..+|...- -+-.+..++...+++..|+.++.+.- ...+|..+...
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~-----------d~~rl~~~~v~l~~~~~avd~~~k~~--------~~~~~k~~~~~ 78 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFA 78 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----------CHHHHHHHHHhhccHHHHHHHHHHcC--------CHHHHHHHHHH
Confidence 445666677777777777776432 23445566777888888877776542 23456666667
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHH
Q 001357 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDA 431 (1093)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~ 431 (1093)
+.......-|..+ .... -.++.-...+...|...|.++..+.+++.++...+.+...+..++.+|..-+..+-++.
T Consensus 79 l~~~~e~~la~i~-~~~~---~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~ 154 (336)
T d1b89a_ 79 CVDGKEFRLAQMC-GLHI---VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 154 (336)
T ss_dssp HHHTTCHHHHHHT-TTTT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCcHHHHHHHH-HHHh---hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHH
Confidence 7766665443221 1111 12444555666777778888888888888877777777777778877744445554444
Q ss_pred HHHH---------HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001357 432 FKTA---------RTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1093)
Q Consensus 432 ~~~a---------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1093)
+... +..... ...+-.+..+|.+.|+++.|+...-.-..
T Consensus 155 l~~~s~~y~~~k~~~~c~~------~~l~~elv~Ly~~~~~~~~A~~~~i~~~~-------------------------- 202 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQ------AHLWAELVFLYDKYEEYDNAIITMMNHPT-------------------------- 202 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHT------TTCHHHHHHHHHHTTCHHHHHHHHHHSTT--------------------------
T ss_pred HHhccccCCHHHHHHHHHH------cCChHHHHHHHHhcCCHHHHHHHHHHcch--------------------------
Confidence 4332 111111 12234456677778888877766543221
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHH----------HHHHHHHHHHc
Q 001357 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA----------YLRLAAIAKAR 572 (1093)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----------~~~la~~~~~~ 572 (1093)
++.-....-.++.+..+.+..-....-.+..+|..... ...+.....+.
T Consensus 203 ---------------------~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~ 261 (336)
T d1b89a_ 203 ---------------------DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV 261 (336)
T ss_dssp ---------------------TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred ---------------------hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHHHHHHhccCCCHHHHHHHHHhc
Confidence 00001111122222333332222222223333332111 12344455666
Q ss_pred CCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCC
Q 001357 573 NNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1093)
Q Consensus 573 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 624 (1093)
++..-...+++.... .++..+...++.+|...++++. +++.+....
T Consensus 262 ~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~----l~~~i~~~~ 307 (336)
T d1b89a_ 262 KQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQA----LRTSIDAYD 307 (336)
T ss_dssp TCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHH----HHHHHHHCC
T ss_pred CCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHH----HHHHHHHhc
Confidence 777777777776544 3356788899999999999744 444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.20 E-value=0.81 Score=46.48 Aligned_cols=209 Identities=15% Similarity=0.128 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
|.|+.|..+|...- -+-....++...+++..|..++.+. +++..|......+.......-|.-
T Consensus 28 ~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i---- 90 (336)
T d1b89a_ 28 KMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM---- 90 (336)
T ss_dssp -CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred CCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHH----
Confidence 33447777776542 2444556777888888888877655 467777777777777766654321
Q ss_pred HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
+.......+.-...+...|...|.++..+..++.++...+.+...+..++.++...+. .+-++.+...- +..
T Consensus 91 -~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~----~kl~e~l~~~s--~~y- 162 (336)
T d1b89a_ 91 -CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP----QKMREHLELFW--SRV- 162 (336)
T ss_dssp -TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH----HHHHHHHHHHS--TTS-
T ss_pred -HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh----HHHHHHHHhcc--ccC-
Confidence 1111111123334566777788888888888888887777777777777777766542 23333332210 011
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHH
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1093)
+...++..+... ..|-.+...|.+.|+++.|+.+.-.- .++ +.-...
T Consensus 163 ---------------~~~k~~~~c~~~-----------~l~~elv~Ly~~~~~~~~A~~~~i~~------~~~-~~~~~~ 209 (336)
T d1b89a_ 163 ---------------NIPKVLRAAEQA-----------HLWAELVFLYDKYEEYDNAIITMMNH------PTD-AWKEGQ 209 (336)
T ss_dssp ---------------CHHHHHHHHHTT-----------TCHHHHHHHHHHTTCHHHHHHHHHHS------TTT-TCCHHH
T ss_pred ---------------CHHHHHHHHHHc-----------CChHHHHHHHHhcCCHHHHHHHHHHc------chh-hhhHHH
Confidence 112222222211 23444566677778888877665321 111 111233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1093)
.-.++.+..+.+..-+...-.+..+|.
T Consensus 210 f~e~~~k~~N~e~~~~~i~~yL~~~p~ 236 (336)
T d1b89a_ 210 FKDIITKVANVELYYRAIQFYLEFKPL 236 (336)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHccCChHHHHHHHHHHHHcCHH
Confidence 344555666666555555555555443
|