Citrus Sinensis ID: 001358

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090--
Protein Sequence
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHccccccHHHHHHcccccEEEEHHHHHHHHccccHHHHHHHHcccccccccccEEEEHHHHHccHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEcccccccEEEccccccEEcccccccccccccccccccEEEEEcccccccEEccccEEEEEcccccccccccccEEEEEEccccccEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccccccEEEcccccccccccEEEccccccEEEEEccccccEEEEEEEcccccEEEEEEcccEEEEEEEccccEEEEEEccccccEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccccccEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccccEEcEEEEEEcccccEEEEEEccccEEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEHHHHHHHHHcccHHHHHHHHccccEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEEEEccccccccHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEcccEEEEEcccccEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEccccccEEEEEccccEEEEEEcccccccccccccccEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFtkvddnrystkIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEanpilqgklkfpsiKRQRLRRLINQSLNWQhvhcanpqpnpdintLFVDHVCqlqetdfsgqssesnalppqttqspsswnfsssmltdSAVSFVALslsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipdyspksslkKEMFQsfgetsfsdfpKTVAQTLiegssspmsmdfhpVQHTLLLVGtnvgdtglwdvnsgqklFIRNFKVWDIGACSMLFKTAlvrdpgvsvnrvvwspdgsllgVAYSKHIVQLYAyhggsdarQQLEIdahvgnvndlafsapckqisvitcgddktikVWDAvtgsrtysfeghgapvyslcphakeniHFIFSISVDGKIKAWLYDSlgarvdydapglgctrmaysangrrlfscgtskegESFLVEWNESEGAIKRTYQglqlqhnsvsvvhfdtakdQILAAGDDHVIKIWDMNKVQLLTTidaggglpenpricfnknGTLLAVIANEnrikiletpesnsvdaagvlsdnlrklsvnpistvtgagiangsvsvnedpkedvkpeisveaenksevekplfarpsecqslllpskvkankisrltyNNGGQAIFALASNGVhlmwrwprndltlsteattkvpprlyqprhgpqfmvndttdsnsqeavpcfalskndaylfsaSGGVISLYIVMTFKTIltimppsptatslafnphdnnviaigmddstiLIYNARSSEVISKLEGHSKRVTGLVFSDALNILVssggdaqifvwdvdgwgiqtcrslqtpdgvmtlapsethiqfHKDQTRFLLVHETHLAIYEAEELTclkqwfpissvpisqatfscdcrmvftsfvdgtlsiheASNLEVQCRILSTaylrpttsclhvyphaiaahplkptqfavgltngevyviepnepgdtwavlppdeivgdqptstsegdramdg
Flexible Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSsftkvddnrysTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIeanpilqgklkFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIsvitcgddktIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIletpesnsvdaAGVLSDNLRKLSVNPIStvtgagiangsvsvnedpkedVKPEisveaenksevekplfarpsecqslllpSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEivgdqptstsegdramdg
Low Complexity Region (SEG)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Disordered region (IsUnstruct)
******DLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQ*************************************************************************************************************************************FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET********AGVLSDNLRKLSVNPISTVTG*********************************************LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST*******************************AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL**********************
Disordered Region (DISOPRED)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSD*TNKAVTMDRPEDS*ILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW*************************
Disordered Region (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQET***********************NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV***********ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGD**************
Disordered Region (DISPRO)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1092	2.2.26 [Sep-21-2011]
Q0WV90	1120	Topless-related protein 1	yes	no	0.963	0.939	0.544	0.0
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.984	0.950	0.538	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.971	0.934	0.498	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.959	0.926	0.466	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.965	0.951	0.466	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.262	0.211	0.274	9e-19
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.492	0.352	0.220	8e-15
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.467	0.405	0.220	2e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.459	0.298	0.225	1e-11
P49695	742	Probable serine/threonine	no	no	0.231	0.340	0.254	2e-11

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1187 bits (3071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1119 (54%), Positives = 778/1119 (69%), Gaps = 67/1119 (5%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T SP     + W  S S +   AVS   ++L  P+ +A             +D P  D
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299

Query: 268  SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321
            SD +S+++ P+ I +E +  V     T+PG           ++    + F++       D
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343

Query: 322  FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 381
             PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+ 
Sbjct: 344  LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402

Query: 382  ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
             CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403  KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462

Query: 442  GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
            G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463  GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522

Query: 502  IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
            IFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523  IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582

Query: 562  ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
            ESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT IDA GG
Sbjct: 583  ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640

Query: 622  LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 680
            L  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N I  V  
Sbjct: 641  LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700

Query: 681  AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 737
                     +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP  ++  KI
Sbjct: 701  PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760

Query: 738  SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
            SRL + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G   M ND  
Sbjct: 761  SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819

Query: 798  DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
            ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820  ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879

Query: 858  VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
            +IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880  IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939

Query: 918  WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 976
            W  Q  + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW P+ 
Sbjct: 940  WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998

Query: 977  -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035
             S+ PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S  +V+P  
Sbjct: 999  ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLV 1058

Query: 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1059 IAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1179 bits (3050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1143 (53%), Positives = 787/1143 (68%), Gaps = 68/1143 (5%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T SP     + W  S S +   AVS  A++L  P+  A            ++D P  D
Sbjct: 240  QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299

Query: 268  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
            S+ +S+++ P+ I +E    V    +S      +S ++      F++       D PKTV
Sbjct: 300  SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348

Query: 327  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
            A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM 
Sbjct: 349  ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407

Query: 387  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
             + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408  LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467

Query: 447  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
            ++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468  ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527

Query: 507  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
            +DGKIKAWLYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528  LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587

Query: 567  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
            +KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +P
Sbjct: 588  VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645

Query: 627  RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 680
            RI FNK G+LLAV  NEN IKI+   +    +     +S    K ++N I     +  T 
Sbjct: 646  RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705

Query: 681  AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 731
            AG A+ S +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  
Sbjct: 706  AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765

Query: 732  VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791
            ++  KISRL + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   
Sbjct: 766  LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824

Query: 792  MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 851
            M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825  MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884

Query: 852  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
            +P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ 
Sbjct: 885  HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944

Query: 912  VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 971
            VW+ DGW  Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+K
Sbjct: 945  VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004

Query: 972  QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1030
            QW    S+ PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S  +
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064

Query: 1031 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSEGDR 1088
            V+P  IAAHP +P  FAVGL++G V++ EP E    W V PP E       PT+ S G  
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGAS 1124

Query: 1089 AMD 1091
            A D
Sbjct: 1125 ASD 1127

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1076 bits (2782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1159 (49%), Positives = 747/1159 (64%), Gaps = 98/1159 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED +  G+W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  D AKA++IL K+LK F+  NEELFKE+  LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  SAR  M+ ELK++IEANP+ + KL+FPS+K  RLR LINQSL
Sbjct: 121  LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 266
            Q T +P + + +  M   S     VS   + L  P N AV+M   +RP            
Sbjct: 240  QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298

Query: 267  ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
               DS+ +L    P  I      L      VTYPG                    QS   
Sbjct: 299  QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338

Query: 317  TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
             ++S  D PK V++ L +GS+   SMDFHPVQ T+LLVGTN+GD  +W+V S +KL  R+
Sbjct: 339  ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397

Query: 375  FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
            FKVWD+  C++  + +L  +   +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R  
Sbjct: 398  FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457

Query: 435  LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
            LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458  LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517

Query: 495  AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
             KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG  CT MAY A+G RLFSCGTSKEGE
Sbjct: 518  QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577

Query: 555  SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
            SF+VEWNESEGA+KRTY GL  +  SV VV FDT K++ L AGD+  +K WDM+ V LL+
Sbjct: 578  SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635

Query: 615  TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 670
            +  A GGLP +P +  NK GTLLAV   +N IKIL   E     +S+   G+ S      
Sbjct: 636  STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695

Query: 671  SV--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSE 711
            SV   PI       ++ TG  ++ G  S        +N D +   DVKP I+ +AE    
Sbjct: 696  SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755

Query: 712  VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771
             +    +  S+ ++L LP  +   ++ +L Y N G AI ALA N  H +W+W +++  L 
Sbjct: 756  WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815

Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 831
             +A + VPP+L+QP  G   M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816  GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874

Query: 832  TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891
            TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH KRVTG
Sbjct: 875  TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934

Query: 892  LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951
            L FS+ LN+LVSSG D+Q+ VW +DGW  Q  + +Q P G      + T +QFH+DQ   
Sbjct: 935  LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994

Query: 952  LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010
            L+VH + LAIYEA +L  +KQW P  SS  ++ A +SCD + ++ +F DG++SI  A+ L
Sbjct: 995  LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054

Query: 1011 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV- 1069
            +++CRI   +YL P+     VYP  +AAHP +P QFAVGLT+G V+VIEP  P   W + 
Sbjct: 1055 QLKCRIGPNSYL-PSNPSSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGIS 1113

Query: 1070 LPPDEIVGDQPTSTSEGDR 1088
             PP+   G   +S    D+
Sbjct: 1114 APPENGAGPSVSSAPGSDQ 1132

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/1120 (46%), Positives = 724/1120 (64%), Gaps = 72/1120 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+  L G+W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M  ELK++IEANP+ + KL FPS K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF+DH C         ++     LP      PS++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236

Query: 234  -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 292
              F S+       + +A  +++P   +        S +++  SP  +   Q + + +P  
Sbjct: 237  GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290

Query: 293  SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 336
               ++     +S+  +++ +                S    S  D P+ V  T+ +GS  
Sbjct: 291  PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350

Query: 337  PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
             +SMDFHP  HTLL VG + G+  LW+V S +K+    FK+W++ ACS++F+ ++V++P 
Sbjct: 351  -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409

Query: 397  VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 456
            +SV RV WSPDG+LLGV+++KH++ +YAY  GSD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410  ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQM 468

Query: 457  SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 516
             V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469  CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527

Query: 517  DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
            D++G+RVDYDAPG  CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G   
Sbjct: 528  DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585

Query: 577  QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
            +  S  VV FDT +++ LA G+D+ IK W+M+   LLT ++A GGLP  PR+ FNK+G L
Sbjct: 586  RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645

Query: 637  LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687
            LAV         +AN + ++ L   E+ S +A+    D   K+S + +++     I    
Sbjct: 646  LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKIE 703

Query: 688  VSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SKV 732
                  P         +EA +++          +  KPL       P++C+ + +P SK 
Sbjct: 704  HMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKD 763

Query: 733  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
              +K++RL Y N G  + AL SNGV  +W+W RN+   + +AT  V P+ +QP  G   M
Sbjct: 764  SVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLM 822

Query: 793  VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
             ND  + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF+
Sbjct: 823  ANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFH 881

Query: 853  PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 912
            P DNN+IAIGM+DS+I IYN R  EV +KL+GH K +TGL FS ALNILVSSG DAQ+F 
Sbjct: 882  PQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFF 941

Query: 913  WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 972
            W  D W  +   ++Q P G   +   +T +QFH DQ + L+ HET LAIY+A ++ C+ +
Sbjct: 942  WTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHK 999

Query: 973  WFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSCL 1029
            W P  ++  PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI  +AY+ +PT +  
Sbjct: 1000 WVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA 1059

Query: 1030 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1069
             ++P  I AHP +P Q AVGL++G V VIEP+E    W V
Sbjct: 1060 PIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1129 (46%), Positives = 711/1129 (62%), Gaps = 75/1129 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  + AKA+ IL +DL+ F+  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  +AR  M+ ELK++IEANP+ + KL FP+++  RLR LINQSL
Sbjct: 121  LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF DH C L     +  +      P  T   P+++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236

Query: 234  ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 281
                          +S M   S  S V  ++  P      M +P++         + IL 
Sbjct: 237  PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284

Query: 282  EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 332
               +    PG+     PD+       P  S+++  + +  +    S  D P   A  L +
Sbjct: 285  RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344

Query: 333  GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
            GS+   SM+F+P+Q+TLLLVG+  G+  LW++ + ++L  R FK+WD+  CS  F+  + 
Sbjct: 345  GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403

Query: 393  RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
            ++  +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ  EIDAHVG VNDLAF+ P
Sbjct: 404  KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463

Query: 453  CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512
             +Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464  NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522

Query: 513  AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
            AWLYD+LG+RVDYDAPG  CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523  AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582

Query: 573  GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632
              + Q     VV FDT+K+  LA G+D  IK WDMN + +LT+ DA GGLP  P + FNK
Sbjct: 583  --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640

Query: 633  NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691
            +G LLAV   +N  KIL  P    S+ A    +    +  V+    V GA +A+ +  V 
Sbjct: 641  DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699

Query: 692  E-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKI 737
                          DP    K  I    +     +      PS+C    LP     + K+
Sbjct: 700  RGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756

Query: 738  SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
             +L Y N G  I AL SNG+  +W+W  N+   S +AT  V P+ +QP  G   M ND +
Sbjct: 757  VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVS 815

Query: 798  DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
              N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNN
Sbjct: 816  GVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875

Query: 858  VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
            VIAIGM+DSTI IYN R  EV SKL+GH KR+TGL FS ALNILVSSG DAQI  W +D 
Sbjct: 876  VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935

Query: 918  WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 977
            W  +   ++Q P G    A  +T +QFH DQ R L+VHET LA+++A ++ C++QW P  
Sbjct: 936  WEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993

Query: 978  SV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035
            S+  PIS A ++C+ ++++T+F DG + + +A +L ++CRI  +AYL      L   P  
Sbjct: 994  SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLS--PLV 1051

Query: 1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1084
            +AAHP  P QFAVGL +G V ++EP E    W ++PP E + + P++TS
Sbjct: 1052 VAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)

Query: 325  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 382
            T  QTL    SS +S+ F P       V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 383  CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442
            C     T  +   G SV  V +SPDG  +        ++++    G+   Q LE   H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052

Query: 443  NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 500
             V  + FS   ++++  +  DD TIK+WDAV+G+ T + EGHG  V+S+   P  +    
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107

Query: 501  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
             + S S+DG IK W   S       +  G     +A+S +G+R+     S   +  +  W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRV----ASGSIDGTIKIW 1162

Query: 561  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
            + + G   +T +G       V  V F     ++ +   D  IKIWD        T++  G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219

Query: 621  GLPENPRICFNKNGTLLAVIANENRIKILET 651
            G  ++  + F+ +G  +A  +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 138/626 (22%), Positives = 244/626 (38%), Gaps = 88/626 (14%)

Query: 349  LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408
            +L  G++     LWD++SGQ              C   FK    R     V  VV+SP+ 
Sbjct: 920  MLASGSDDQTVRLWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNS 960

Query: 409  SLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467
             +L    S   V+L+    G    + L I   H G V  +AF+     ++  T   D+T+
Sbjct: 961  LMLASGSSDQTVRLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTV 1014

Query: 468  KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527
            ++WD  +    Y F+GH + V S+   +   +  + S S D  ++ W  D       Y  
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTL 1070

Query: 528  PG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
             G   C R + +S +G  L S G     +  +  W+ S G    T QG     + V  + 
Sbjct: 1071 QGHTSCVRSVVFSPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLV 1123

Query: 586  FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
            F      +     D ++++WD++  + L T+   G       + F+ +G  LA  + +  
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQT 1181

Query: 646  IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV------- 698
            +++ +   S  +      +  +  +  NP  +   +G ++ +V + E             
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH 1241

Query: 699  ---------KPEISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
                      P+ S+ A   S+    L+    S+C   L   +   N ++ + +N  G  
Sbjct: 1242 TSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSM 1298

Query: 749  IFALASNGVHLMWR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHG 788
            + + + +    +W                W  +     D T+    +     RL+    G
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358

Query: 789  PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTAT 847
                    T       V     S + A L S SG   + L+ + + K + T+   +    
Sbjct: 1359 ECLY----TFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414

Query: 848  SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
            S+ F+P D  ++A G DD T+ ++N  S E +  L GH   V  + FS    IL S   D
Sbjct: 1415 SIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473

Query: 908  AQIFVWDVD-GWGIQTCRSLQTPDGV 932
              I +WDV  G  I+T +S +  +G+
Sbjct: 1474 ETIKLWDVKTGECIKTLKSEKIYEGM 1499

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 120/545 (22%), Positives = 224/545 (41%), Gaps = 35/545 (6%)

Query: 374  NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
            + +VW++ +  +L    + R     V  VV+SPDG +L    +   V+L++   G   + 
Sbjct: 665  HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720

Query: 434  QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
               +  H   V  +AF    + ++  +   DKTIK+WD   G+   +  GH   V   C 
Sbjct: 721  --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774

Query: 494  HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 552
                + + + S + D  IK W   S G  +       G  R +A+SA+G+ L     S  
Sbjct: 775  AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829

Query: 553  GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
            G+  +  WN   G   +TY G     NSV  + +      +++   D  IK+WD      
Sbjct: 830  GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886

Query: 613  LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672
            + T+   G   E   + F+ +G  LA ++ +  +++        + A    +D    ++ 
Sbjct: 887  IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944

Query: 673  NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732
            +P   +  +G  + +V + +         IS    +   +    F+  S  Q+L   S  
Sbjct: 945  SPDRQILASGSNDKTVKLWD---WQTGKYISSLEGHTDFIYGIAFSPDS--QTLASASTD 999

Query: 733  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
             + ++  ++     Q I    ++ V+ +   P+  +  +  A   V  +L+    G    
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055

Query: 793  VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 851
                T S   + +   A S +   L SAS    + L+   T + +  +   S    S  F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112

Query: 852  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
            +P +  +IA    D T+ I++ +  + +  L GH+  V  + FS    IL S+  D  + 
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171

Query: 912  VWDVD 916
            +WDV+
Sbjct: 1172 IWDVN 1176

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)

Query: 398  SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +V  V +SPDG  +    S   ++L+    G+  +    I  H   VN++ FS   K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171

Query: 458  VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 514
              +   D +IK+WD  +G    +  GH A V ++   P  +     I + S D  +K W 
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225

Query: 515  -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
                 L  +L    D+         +++S +G+ L S    K     +  W  ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275

Query: 570  TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629
            T +G    ++SV  V+F +    I +A  D+ IK+W+ + ++L T     GG+     + 
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329

Query: 630  FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 686
            F  +  ++A  + +N I++ + P  + ++   VL+ N    +V+ +   S +  AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385

Query: 687  SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 744
            ++ +                              S+  SLL  LP               
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402

Query: 745  GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804
            G +AI+ ++          P+ DL  S  A   V  ++++ R G         D+     
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448

Query: 805  VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
            V     S +   L SAS    + L+ V   K   T+   +     ++F+P D  +IA   
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507

Query: 864  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 922
             D TI ++++ S  +I  L  H+  V  + F+   ++L S+  D  + +W   DG  + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567

Query: 923  --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 974
                      S  +PDG    + SE       D+T  +   + HL       LT L    
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609

Query: 975  PISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
            P     +  A FS D + + +  +D T  I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 22/275 (8%)

Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
             VWD+ +   L       D    V  V +SPDG+LL        V+L+     + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536

Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
              + H   V D+AFS      S++  G  D T ++W+  TG+     +GH   VY++  
Sbjct: 537 AVFEGHTHYVLDIAFS---PDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA- 592

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
               +   + S S DG I+ W   +   R    AP      +A+S +G  L         
Sbjct: 593 -FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----S 646

Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
           +S +  W+ + G    T++G     + V  V F      + +  DD  I++WD+   +  
Sbjct: 647 DSTVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEH 703

Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
           TT++ G   P +  + F+  GT LA  + +  I+I
Sbjct: 704 TTLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1092
224141931	1109	predicted protein [Populus trichocarpa]	0.975	0.960	0.585	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.958	0.924	0.556	0.0
357455301	1134	WD repeat-containing protein, putative [	0.959	0.924	0.550	0.0
357455305	1149	WD repeat-containing protein, putative [	0.959	0.912	0.550	0.0
357455303	1112	WD repeat-containing protein, putative [	0.959	0.942	0.555	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.957	0.923	0.551	0.0
357458875	1138	WD repeat-containing protein, putative [	0.960	0.921	0.552	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.969	0.932	0.550	0.0
24461849	1127	CTV.2 [Citrus trifoliata]	0.955	0.925	0.552	0.0
297839887	1120	hypothetical protein ARALYDRAFT_895943 [	0.956	0.933	0.547	0.0

>gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa]

 Score = 1218 bits (3151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1103 (58%), Positives = 784/1103 (71%), Gaps = 38/1103 (3%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI  G W++ E+YLS F
Sbjct: 1    MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TK+DDNRYSTKIYFEIRKQ F E LD  + +KAL+IL KDLK FAP NEEL KE+  LLT
Sbjct: 61   TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++IRDHE LS  Y DA SARK MM+ELK++IEANP+L+ KL+FP+I   RLRRLINQSL
Sbjct: 121  LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
            NWQH+HCA PQPNPDI TLFVDH+C    +D   FS  +S+SN LP QTT     + S+ 
Sbjct: 180  NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238

Query: 234  NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 286
            N +SS    S++S  ALSL  PTN    +   E   +LS         + + +L E  +T
Sbjct: 239  NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297

Query: 287  VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 341
            V   G+    I +    S+    +F  F     S     D PK V + L EGSS P SMD
Sbjct: 298  VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356

Query: 342  FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401
            FHP + T+LLVGT VGD GLW+V+SG+ L  RNFKVWDI ACSM+FK  L++DP VSVNR
Sbjct: 357  FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416

Query: 402  VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
            V WSP+G L GVAYSKH+VQ+Y+Y+   DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417  VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476

Query: 462  GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521
            GDDK +K WDA  G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477  GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536

Query: 522  RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581
            RVDYDAPGLGCT MAYS + RRLFSCGTS  GESFLVEW++SEGAIKRTY G  LQ NS 
Sbjct: 537  RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593

Query: 582  SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641
            SVV FD  K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594  SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653

Query: 642  NENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------VNED 693
            N+N+IKIL    S  +       L D+ R +S   IS    A  A+ +V+      +   
Sbjct: 654  NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712

Query: 694  PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753
              + VK +I+ +              PS+CQ L LPS +KANKISRL YNN G +I AL 
Sbjct: 713  NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772

Query: 754  SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
            SN  HL W+WP+ND  LS  A  KV P+L+QPR     M ND T SN +E VPCFALS+N
Sbjct: 773  SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832

Query: 814  DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873
            D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN 
Sbjct: 833  DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892

Query: 874  RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 933
            RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW  Q    LQ PDG +
Sbjct: 893  RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952

Query: 934  TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 991
              + S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P   + PIS ATFSCD +
Sbjct: 953  PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012

Query: 992  MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051
            MV+ SF+DG +SI +AS+ ++ C+I  TAYL PT+S L VYP AIAAHP +P QFAVGLT
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS-LGVYPIAIAAHPQEPNQFAVGLT 1071

Query: 1052 NGEVYVIEPNEPGDTWAVLPPDE 1074
            +G V V EP      W++L  DE
Sbjct: 1072 DGGVIVFEPPISAGKWSMLTADE 1094

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 1216 bits (3147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1138 (55%), Positives = 787/1138 (69%), Gaps = 91/1138 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T +P     + W  + + +   AVS  A+ L  P+  A            ++D P  D
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299

Query: 268  SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 318
            SD +S+++ P+ + +E        + T+PG       N PD                   
Sbjct: 300  SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340

Query: 319  FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 378
              D PKT  ++L +GSS PMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVW
Sbjct: 341  --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397

Query: 379  DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 438
            D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D  Q LEID
Sbjct: 398  DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457

Query: 439  AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498
            AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458  AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517

Query: 499  IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558
            I FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518  IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577

Query: 559  EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618
            EWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA
Sbjct: 578  EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635

Query: 619  GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 670
             GGLP +PRI FNK+G LLAV ANEN IKIL   +         NS+      S+ + K 
Sbjct: 636  DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695

Query: 671  SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 717
            ++NPIS              A       ++N D +   DVKP IS E+ +KS++ K    
Sbjct: 696  TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755

Query: 718  ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777
              PS+C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +AT  
Sbjct: 756  NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815

Query: 778  VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 837
            V P+L+QP  G   M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ 
Sbjct: 816  VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874

Query: 838  TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 897
            T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  
Sbjct: 875  TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934

Query: 898  LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957
            LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET
Sbjct: 935  LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994

Query: 958  HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
             LAIYEA +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL ++CRI
Sbjct: 995  QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054

Query: 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
              +AYL  + S  +V P  IAAHP +P QFAVGL++G V+V EP+E    W V PP E
Sbjct: 1055 NPSAYLSASVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIE 1111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1199 bits (3103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1139 (55%), Positives = 780/1139 (68%), Gaps = 91/1139 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
            Q T +P     +  M   + V+  ++S                      + PTN +V  D
Sbjct: 240  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297

Query: 264  RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
             P  DSD +S+++ P+ + +E        + T+PG                    Q+F  
Sbjct: 298  YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339

Query: 317  TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
             S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 340  NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398

Query: 377  VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
            VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399  VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458

Query: 437  IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
            IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459  IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518

Query: 497  ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
            ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES 
Sbjct: 519  ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578

Query: 557  LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
            +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+
Sbjct: 579  IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636

Query: 617  DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
            DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ +
Sbjct: 637  DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695

Query: 668  RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
             K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K   
Sbjct: 696  TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 755

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT 
Sbjct: 756  INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 815

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816  SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 874

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 875  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 934

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHE
Sbjct: 935  VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 994

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++CR
Sbjct: 995  TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1054

Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            I  +AYL    S  ++ P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1055 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 627/1139 (55%), Positives = 780/1139 (68%), Gaps = 91/1139 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16   MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 76   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 136  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 195  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
            Q T +P     +  M   + V+  ++S                      + PTN +V  D
Sbjct: 255  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312

Query: 264  RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
             P  DSD +S+++ P+ + +E        + T+PG                    Q+F  
Sbjct: 313  YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354

Query: 317  TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
             S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 355  NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413

Query: 377  VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
            VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414  VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473

Query: 437  IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
            IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474  IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533

Query: 497  ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
            ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES 
Sbjct: 534  ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593

Query: 557  LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
            +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+
Sbjct: 594  IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651

Query: 617  DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
            DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ +
Sbjct: 652  DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710

Query: 668  RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
             K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K   
Sbjct: 711  TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 770

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT 
Sbjct: 771  INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 830

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 831  SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 889

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 890  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 949

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHE
Sbjct: 950  VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 1009

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++CR
Sbjct: 1010 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1069

Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            I  +AYL    S  ++ P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1070 INPSAYLSANVSSSNIQPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1199 bits (3102), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1117 (55%), Positives = 773/1117 (69%), Gaps = 69/1117 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 282
            Q T +P     +  M   + V+    S+S      + +  P   D +S+++ P+ + +E 
Sbjct: 240  QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297

Query: 283  ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 338
                   + T+PG                    Q+F   S  D PKTV +TL +G SSPM
Sbjct: 298  NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338

Query: 339  SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
            SMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339  SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398

Query: 399  VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
            VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399  VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458

Query: 459  ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
            ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459  ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518

Query: 519  LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
            LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + + 
Sbjct: 519  LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577

Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
             S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578  -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636

Query: 639  VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGA 681
            V ANEN IKI         L + E++S DA+   S+ + K  +NP+        + +  A
Sbjct: 637  VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695

Query: 682  GIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 738
                    +N D +   D+KP IS E+ +KS++ K      PS C+SL LP   +  KIS
Sbjct: 696  SSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKIS 755

Query: 739  RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798
            RL Y N G AI ALASN +HL+W+W RND   S +AT  VPP+L+QP  G   M ND  D
Sbjct: 756  RLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDIND 814

Query: 799  SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 858
            +N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 815  NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 874

Query: 859  IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
            IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG D QIFVW+ DGW
Sbjct: 875  IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGW 934

Query: 919  GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 977
              Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  +
Sbjct: 935  EKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDA 994

Query: 978  SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1037
            + PIS ATFSCD  ++F SF+D T+ +  ASNL ++CRI  +AYL    S  ++ P  IA
Sbjct: 995  AAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNIQPLVIA 1054

Query: 1038 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            AHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1055 AHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1141 (55%), Positives = 787/1141 (68%), Gaps = 95/1141 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
            Q T +P     + W  + + +  +AVS   A+ L  P+  A            ++D P  
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299

Query: 267  DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 320
            DSD +++++ P+ I +E        + T+PG                 +  Q+F      
Sbjct: 300  DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342

Query: 321  DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
            D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD  LW+V S ++L  RNFKVWD+
Sbjct: 343  DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401

Query: 381  GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
             ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402  SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461

Query: 441  VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
            VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI 
Sbjct: 462  VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521

Query: 501  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
            FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522  FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581

Query: 561  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
            NESEGA+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLTT+DA G
Sbjct: 582  NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639

Query: 621  GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 672
            GLP +PRI FNK+GTLLAV ANEN IKIL   +         NS+  A   S+ L K ++
Sbjct: 640  GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699

Query: 673  NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 714
            NPI                 S V  AG+   + ++      DVKP IS E+ +KS++ K 
Sbjct: 700  NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754

Query: 715  PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
                  S+C+SL LP  V+  KISRL Y N G AI ALASN +HL+W+W RN+   S +A
Sbjct: 755  TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814

Query: 775  TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
            T  + P+L+QP  G   M ND  DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815  TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873

Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
            T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL F
Sbjct: 874  TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933

Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            S  LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+V
Sbjct: 934  SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993

Query: 955  HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013
            HET LAIYEA +L  LKQWFP  SS PIS ATFSCD ++VF SF+D T+ +  ASNL ++
Sbjct: 994  HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053

Query: 1014 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1073
            CRI  ++YL P +   ++ P  IAAHP +P QFA+GL++G V+V EP E    W V PP 
Sbjct: 1054 CRINPSSYL-PASVSSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPI 1112

Query: 1074 E 1074
            E
Sbjct: 1113 E 1113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1193 bits (3086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1140 (55%), Positives = 782/1140 (68%), Gaps = 91/1140 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C             +   G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
                       + W  + + +  +AVS   A+ L  P+               ++D P  
Sbjct: 240  QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299

Query: 267  DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 317
            DSD +++++ P+ I +E    V     T+PG       N PD  P               
Sbjct: 300  DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344

Query: 318  SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 377
                 PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG   LW+V S +KL  RNFKV
Sbjct: 345  ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399

Query: 378  WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 437
            WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400  WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459

Query: 438  DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497
            DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460  DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519

Query: 498  NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557
            NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520  NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579

Query: 558  VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
            VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+D
Sbjct: 580  VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637

Query: 618  AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 668
            A GGLP +PRI FNK+GTLLAV AN+N IKI         L T E+NS+  A   S+ + 
Sbjct: 638  ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696

Query: 669  KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
            K ++N +S+            A        +N D +   DVKP IS EA +KS++ K   
Sbjct: 697  KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+WPRN+   S +A  
Sbjct: 757  INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VP +L+QP  G   M ND  DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817  SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 876  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+VHE
Sbjct: 936  VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAI+EA +L CLKQW P  SS PIS ATFSCD ++++ SF+D T+ +  ASNL ++CR
Sbjct: 996  TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055

Query: 1016 ILSTAYLRPTTSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            I   AYL  + S   +V P  IAAHP +  QFAVGL++G V+V EP E    W V PP+E
Sbjct: 1056 INPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESEGKWGVPPPNE 1115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1192 bits (3085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1130 (55%), Positives = 775/1130 (68%), Gaps = 71/1130 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA  N+ELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY  D  SAR  M++ELK++IEANP+   KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C QL              G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
                       + W  + + +    VS  A+ L  P+  A            ++D P  D
Sbjct: 240  QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299

Query: 268  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
            SD +S+++ P+ + +E    V     +        P         Q+F      D PKT 
Sbjct: 300  SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350

Query: 327  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
             +TL +G SSPMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVWD+ ACSM 
Sbjct: 351  MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409

Query: 387  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
            F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410  FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469

Query: 447  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
            LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470  LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529

Query: 507  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
            +DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530  LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589

Query: 567  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
            +KRTYQG   +  S+  V FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590  VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647

Query: 627  RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 678
            RI FNK+G LLAV A EN IKIL   +         NS+      S+ + K ++NPIS  
Sbjct: 648  RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707

Query: 679  TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 725
              A  +           G  ++N D +   DVKP IS E+ +KS++ K      PS+C+S
Sbjct: 708  AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767

Query: 726  LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785
            L LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +A+  V P+L+QP
Sbjct: 768  LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827

Query: 786  RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 845
              G   M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P 
Sbjct: 828  SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886

Query: 846  ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
            A  LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG
Sbjct: 887  ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946

Query: 906  GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965
             DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA 
Sbjct: 947  ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006

Query: 966  ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
            +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL +QCRI  +AYL  
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066

Query: 1025 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
            + S  +V P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1067 SVSS-NVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIE 1115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 1191 bits (3082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1131 (55%), Positives = 782/1131 (69%), Gaps = 88/1131 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K        N SL
Sbjct: 121  LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 172  NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 266
            Q T +P     + W  +   +T  AVS  A+ L  P+  A  +  P              
Sbjct: 232  QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291

Query: 267  DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 324
            DSD LS+++ P+ I +E             N+P +  P S       Q+F  ++  D PK
Sbjct: 292  DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337

Query: 325  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 384
            TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338  TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396

Query: 385  MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444
            M  + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397  MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456

Query: 445  NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504
            ND+AFS P KQ+ VITCGDDKTIKVWDA  G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457  NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516

Query: 505  ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564
             ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517  TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576

Query: 565  GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624
            GA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT+IDA GGLP 
Sbjct: 577  GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634

Query: 625  NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 676
            +PRI FNK+G LLAV  N+N IKIL T +         N    A   S+N  K +++PIS
Sbjct: 635  SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693

Query: 677  -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 722
                   T AG+A+ + S+   P          DVKP I+ E+ +KS+V K    + P++
Sbjct: 694  AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753

Query: 723  CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782
            C+SL LP  ++A KISRL + N G AI ALASN +HL+W+W R +   S +AT  V P+L
Sbjct: 754  CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813

Query: 783  YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842
            +QP  G   M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814  WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872

Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
             P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873  PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932

Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962
            SSG D+Q+ VW  DGW  Q  R LQ P G    A S+T +QFH+DQ  FL+VHET LAI+
Sbjct: 933  SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992

Query: 963  EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021
            E  +L C+KQW P  SS PI+ ATFSCD ++V+  F+D T+ +  A+NL+++CRI  +AY
Sbjct: 993  ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052

Query: 1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1072
            L P     +V+P  IAAHP +P +FA+GL++G V+V EP E    W V PP
Sbjct: 1053 L-PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1102

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata]

 Score = 1191 bits (3080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1126 (54%), Positives = 778/1126 (69%), Gaps = 81/1126 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 266
            Q T SP     + W  S S +   AVS  A++L             + PTN AV  D P 
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297

Query: 267  -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 314
             DSD +S+++ P+ I +E +  V     T+PG +  +     +PD               
Sbjct: 298  GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342

Query: 315  GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
                  D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + 
Sbjct: 343  ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395

Query: 375  FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
            FKVWD+  CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ 
Sbjct: 396  FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455

Query: 435  LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
            LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456  LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515

Query: 495  AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
             KENI FIFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516  YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575

Query: 555  SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
            SF+VEWNESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT
Sbjct: 576  SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633

Query: 615  TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673
             IDA GGL  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N
Sbjct: 634  AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693

Query: 674  PISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPS 730
             I              +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP 
Sbjct: 694  SIPVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPE 753

Query: 731  KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790
             ++A KISRL + N G AI ALASN +HL+W+W RND   + +AT  VPP+ +QP  G  
Sbjct: 754  NMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-I 812

Query: 791  FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 850
             M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LA
Sbjct: 813  LMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
            F+P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 873  FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQL 932

Query: 911  FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970
             VW+ DGW  Q  + LQ P G  T A S+T +QFH+DQ  FL+VHET LAIYE  +L C+
Sbjct: 933  CVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECM 992

Query: 971  KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028
            KQW P+  SS PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S 
Sbjct: 993  KQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051

Query: 1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074
             +V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1052 SNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.5442	0.9633	0.9392	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1092
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-06
smart00320	40	smart00320, WD40, WD40 repeats	8e-06
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (283), Expect = 3e-27
 Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)

Query: 331 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 389
           ++G +     + F P    L         TG  D            KVWD+   +     
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45

Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
            L       V  V  S DG+ L    S   ++L+    G   R    +  H   V+ +AF
Sbjct: 46  TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101

Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509
           S P  +I + +   DKTIKVWD  TG    +  GH   V S+      +  F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157

Query: 510 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
            IK W  D    +      G       +A+S +G +L S  +   G   L  W+ S G  
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211

Query: 568 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
             T +G    H N V+ V F      + +  +D  I++WD+   + + T+        N 
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263

Query: 627 --RICFNKNGTLLAVIANENRIKI 648
              + ++ +G  LA  + +  I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)

Query: 291 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 350
           G SL ++   S  SS    +  +    S    P   +  L     S  S+ F P    LL
Sbjct: 22  GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80

Query: 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409
           L G++ G   LWD+++G+KL                   +L      SV+++   SPDG+
Sbjct: 81  LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123

Query: 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469
            + +A S     +  +   +  +    ++ H  +V  LAFS P  ++       D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182

Query: 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529
           WD  TG    +  GH  PV SL       +    S S DG I+ W   +        +  
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589
                 ++S +G  L S  +      + +  + S          L    +SV  V F   
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295

Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 648
              + +   D  +++WD+   +LL+++   G       + F+ +G+LL    +++  I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703
            +      +      S N+  +S +P   V  +G  +G+V + +     +   + 
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 26/213 (12%)

Query: 805  VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
            V C A S +   L + SG G I ++ + T + + T+   +     +A +  D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 864  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
             D TI +++  + E +  L GH+  V+ + FS    IL SS  D  I VWDV+     T 
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125

Query: 924  RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 975
            + L T     D V ++A S     F     +D T    +      +++     C+     
Sbjct: 126  KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174

Query: 976  ISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              +  ++   FS D   + +S  DGT+ + + S
Sbjct: 175  GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 18/208 (8%)

Query: 802  QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
               V   A S +   L S+S    I ++ V T K + T+   +    S+AF+P D   +A
Sbjct: 93   TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151

Query: 861  IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWG 919
                D TI +++ R+ + ++ L GH+  V  + FS     L+SS  D  I +WD+  G  
Sbjct: 152  SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Query: 920  IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPI 976
            + T R     +GV ++A S            +LL     +  + +++     C++     
Sbjct: 212  LGTLRG--HENGVNSVAFS---------PDGYLLASGSEDGTIRVWDLRTGECVQT-LSG 259

Query: 977  SSVPISQATFSCDCRMVFTSFVDGTLSI 1004
             +  ++   +S D + + +   DGT+ I
Sbjct: 260  HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
           + + K   ++IL G W++  ++LSS       R S K+ FE+RKQ F E +    + +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
              V   A S +   L S+S  G I L+ + T K + T+        S+AF+P    + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
            G +D TI +++ R+ E +  L GH+  VT L +S     L S   D  I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 489
              L +  H  ++  +AFS P  ++ +++   D TIK+WD   G +        H + V 
Sbjct: 56  LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113

Query: 490 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547
            L   + +    + + S +DG +K W L          +      T +A+S +G+ L S 
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 606
            +       +  W+   G    T  G     + VS + F       I +   D  I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 665
           ++  +LL +  +G    ++    F+ +G+LLA  +++  I++ +   S+S+       S 
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725
           ++  ++ +P   +  +G ++G+V + +     +   ++++                    
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328

Query: 726 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784
                      +S L+++ +G   +   + +G   +W         + E           
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368

Query: 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 843
                               V   + S +   + S S  G + L+ + T   +  +   +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882
              TSL F+P D   +A G  D+TI +++ ++S      
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 2e-10
 Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 13/222 (5%)

Query: 811  SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869
              +     S+  G + L+ + T  K I T+   S + TSLAF+P    + +    D TI 
Sbjct: 122  GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 870  IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 927
            +++ R+ + +S L GH+  V+ L FS D   ++ S   D  I +WD+     +++  S  
Sbjct: 182  LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 928  TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 986
            +   V +         F  D +          + +++    + L +     S  +    F
Sbjct: 242  SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 987  SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028
            S D +++ +   DGT+ + +    ++   +    +  P +S 
Sbjct: 293  SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 805  VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862
            V   A S +   L ++    G I L+ + T K + + +     +   +F+P D +++A G
Sbjct: 201  VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259

Query: 863  MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 921
              D TI +++ RS S ++  L GHS  V  + FS    +L S   D  + +WD++   + 
Sbjct: 260  SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319

Query: 922  TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 981
            +  +L+  +G        + + F  D +  +        I   +  T            +
Sbjct: 320  SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373

Query: 982  SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019
               +FS D R+V +   DGT+ + + S   +   +   
Sbjct: 374  LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 83/472 (17%), Positives = 173/472 (36%), Gaps = 76/472 (16%)

Query: 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
           I ++    D  + + D      +    GH   + S+      +   + S S DG IK W 
Sbjct: 40  ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93

Query: 516 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
            D+    +           +++A  S +G  +    +S +G   +  W+ S         
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150

Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631
            L+    SV+ + F      + +    D  IK+WD+   + L+T+        +  + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207

Query: 632 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
            +G LL    + +  I++  L T +      +G     +   S +     +G+  ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265

Query: 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
            +                                         ++++     T +    +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286

Query: 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808
           + ++A +    +        + S++ T ++    +    G        T    +  V   
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRL----WDLETGKLLSS--LTLKGHEGPVSSL 334

Query: 809 ALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
           + S + + L S     G I L+ + T K + T+   S    S++F+P D  V++ G  D 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDG 392

Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
           T+ +++  +  ++  L+GH+ RVT L FS     L S   D  I +WD+   
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
           +TL   SSS +S+ F P    LL  G++ G   LWD+ +G+ L     K           
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 446
                      V+ + +SPDGSLL    S    ++L+         + L+      NV  
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
           ++FS   + +S  +   D T+++WD  TGS   + +GH + V SL          + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431

Query: 507 VDGKIKAWLYDSLGARVDYDAPG 529
            D  I+ W   +    V +   G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590
           G T +A+S +G+ L +          +  W+   G + RT +G       V  V      
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63

Query: 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 649
             + +   D  I++WD+   + + T+    G       + F+ +G +L+  + +  IK+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
           +      +      +D +  ++ +P  T   +   +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 882  LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941
            L+GH+  VT + FS    +L +  GD  I VWD++   +       T   V         
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56

Query: 942  IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 996
            +    D T            +++ E   C++        +SSV      FS D R++ +S
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111

Query: 997  FVDGTLSIHE 1006
              D T+ + +
Sbjct: 112  SRDKTIKVWD 121

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)

Query: 321 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 375
           D       T + G +    S+ F P   T +   +  G   LWD+ +G+   +       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177

Query: 376 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411
                                   K+WD+   S       +R     VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
                   ++++    G        +  H  +V  LA+S   K+  + +   D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           S E++  L+GH+  VT + FS     L S   D  I +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 4  LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
             +L  LIL++L   G+ E+A  L++ES  
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           +++  L+GH+  VT + FS   N+L S   D  + VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
           +    +  H G V  +AFS     +   +  DD T++VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
            +  H G V  +AFS   K +   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 849 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 900
           +AFNP D   +    +D TI+ +           S+ I  L+GH+K+V  + F   A+N+
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140

Query: 901 LVSSGGDAQIFVWDVD 916
           L S+G D  + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1092
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.98
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG1963	792	consensus WD40 repeat protein [General function pr	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.87
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.8
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.77
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.64
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.64
KOG1334	559	consensus WD40 repeat protein [General function pr	99.63
PRK01742	429	tolB translocation protein TolB; Provisional	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.62
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
COG4946	668	Uncharacterized protein related to the periplasmic	99.61
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.61
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.6
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.59
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.59
KOG1310	758	consensus WD40 repeat protein [General function pr	99.59
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.58
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.57
PRK03629	429	tolB translocation protein TolB; Provisional	99.56
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.56
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.55
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
KOG2321	703	consensus WD40 repeat protein [General function pr	99.54
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
KOG2315	566	consensus Predicted translation initiation factor	99.53
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.5
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.48
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.44
KOG2314	698	consensus Translation initiation factor 3, subunit	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.43
COG4946	668	Uncharacterized protein related to the periplasmic	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.42
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.4
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.38
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
KOG2314	698	consensus Translation initiation factor 3, subunit	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.35
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.32
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.3
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.28
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.21
KOG4547	541	consensus WD40 repeat-containing protein [General	99.18
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.17
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.15
PRK04043	419	tolB translocation protein TolB; Provisional	99.05
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.98
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.97
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.97
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.96
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.95
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.93
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.91
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.86
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.83
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.77
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.77
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.76
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.73
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.63
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.62
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.62
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.61
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.59
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.56
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.56
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.55
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.54
PRK02888	635	nitrous-oxide reductase; Validated	98.51
PRK02888	635	nitrous-oxide reductase; Validated	98.5
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.48
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.47
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.47
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.46
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.45
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.44
KOG2695	425	consensus WD40 repeat protein [General function pr	98.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.41
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.39
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.39
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.38
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.37
KOG3621	726	consensus WD40 repeat-containing protein [General	98.36
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.33
KOG2695	425	consensus WD40 repeat protein [General function pr	98.32
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.31
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.29
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.2
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.11
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.09
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.08
PRK13616	591	lipoprotein LpqB; Provisional	98.08
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.04
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.01
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.98
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.96
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.91
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.91
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.84
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.83
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.82
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.76
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.73
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.71
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.71
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.7
COG3391	381	Uncharacterized conserved protein [Function unknow	97.69
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.68
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.63
KOG3621	726	consensus WD40 repeat-containing protein [General	97.62
PRK13616	591	lipoprotein LpqB; Provisional	97.58
COG3391	381	Uncharacterized conserved protein [Function unknow	97.58
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.51
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.46
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.45
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.41
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.41
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.37
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.33
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.29
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.13
PRK10115	686	protease 2; Provisional	97.13
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.12
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.12
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.1
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.09
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.07
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.02
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.02
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.92
PRK10115	686	protease 2; Provisional	96.86
KOG2395	644	consensus Protein involved in vacuole import and d	96.81
PHA02713	557	hypothetical protein; Provisional	96.8
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.8
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.75
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.73
KOG2395	644	consensus Protein involved in vacuole import and d	96.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.52
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.52
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.51
PHA02713	557	hypothetical protein; Provisional	96.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.42
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.26
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.26
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.18
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.12
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.12
PRK13684	334	Ycf48-like protein; Provisional	95.99
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.96
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.87
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.83
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.7
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.62
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.62
KOG2444	238	consensus WD40 repeat protein [General function pr	95.61
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.58
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.47
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.45
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.2
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.19
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.02
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.99
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.93
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.91
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.54
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.53
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.31
PHA03098	534	kelch-like protein; Provisional	94.06
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.98
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.98
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.94
KOG2444	238	consensus WD40 repeat protein [General function pr	93.94
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.36
PHA03098	534	kelch-like protein; Provisional	93.28
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.18
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.93
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.9
PRK13684	334	Ycf48-like protein; Provisional	92.87
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.76
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.61
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.39
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.33
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.26
PHA02790	480	Kelch-like protein; Provisional	92.19
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.9
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.52
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.44
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.14
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.11
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.0
PHA02790	480	Kelch-like protein; Provisional	90.97
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	90.96
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.89
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.83
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.79
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.7
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.32
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.3
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.28
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.06
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.89
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.75
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.64
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	89.63
COG3292	671	Predicted periplasmic ligand-binding sensor domain	89.46
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.27
COG3292	671	Predicted periplasmic ligand-binding sensor domain	89.1
COG5167	776	VID27 Protein involved in vacuole import and degra	88.76
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.7
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.64
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	88.6
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.25
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	87.62
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.62
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	87.6
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.54
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.49
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	87.15
COG5167	776	VID27 Protein involved in vacuole import and degra	87.08
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	87.03
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.9
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.43
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.39
KOG2247	615	consensus WD40 repeat-containing protein [General	86.34
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.25
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.16
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.97
PRK13614	573	lipoprotein LpqB; Provisional	85.51
COG5276	370	Uncharacterized conserved protein [Function unknow	85.36
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.2
COG4590	733	ABC-type uncharacterized transport system, permeas	85.03
PRK13613	599	lipoprotein LpqB; Provisional	84.74
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.23
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.99
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.45
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.92
COG4590	733	ABC-type uncharacterized transport system, permeas	82.78
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	82.49
PRK13615	557	lipoprotein LpqB; Provisional	81.93

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.1e-73  Score=560.61  Aligned_cols=493  Identities=21%  Similarity=0.309  Sum_probs=416.9

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhh
Q 001358            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF   81 (1092)
Q Consensus         5 ~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~---~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~   81 (1092)
                      +-|+|||+.|+|+.+||..|+.+||.|||+.++   ++.|.+++++|+|+.++..+..+...+ .+...++.|++.||+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence            458999999999999999999999999999885   899999999999999999998874333 4445569999999999


Q ss_pred             hhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001358           82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK  161 (1092)
Q Consensus        82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~  161 (1092)
                      ||++..|....|+.+||+...++. ++.++|++|+.-+..++.....+... .-.....|.+|+++|+++|||+++    
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence            999999999999999999988886 57888999988777655433333222 112357899999999999999999    


Q ss_pred             cCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 001358          162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT  241 (1092)
Q Consensus       162 ~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (1092)
                           +|++||++||+||++||+++|.||| ..+..|||.||.|.+      .|      +|+++               
T Consensus       170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~qt---------------  216 (519)
T KOG0293|consen  170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPSQT---------------  216 (519)
T ss_pred             -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCchh---------------
Confidence                 9999999999999999999999999 455589999999988      34      34433               


Q ss_pred             CcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccC
Q 001358          242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD  321 (1092)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~  321 (1092)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (519)
T KOG0293|consen  217 --------------------------------------------------------------------------------  216 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEE
Q 001358          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~  401 (1092)
                           .++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.-                ...+.+|..+|..
T Consensus       217 -----~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y  274 (519)
T KOG0293|consen  217 -----WQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY  274 (519)
T ss_pred             -----hhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence                 366889999999999999999 699999999999999987655321                1238899999999


Q ss_pred             EEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +.||||.+||++|+.+..+.+||+.+|.......  .+|...+.+++|.|||.  .+++|+.|+++..||++ |..+...
T Consensus       275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W  349 (519)
T KOG0293|consen  275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW  349 (519)
T ss_pred             EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence            9999999999999999999999999998766332  24668899999999999  79999999999999954 5556556


Q ss_pred             ecCC-cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358          482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       482 ~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      ++-. ..|.++++  +.||+++++.+.|..|++++..+...+.. .....+|+++++|.||+++++.-.    +..+.+|
T Consensus       350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~l-ise~~~its~~iS~d~k~~LvnL~----~qei~LW  422 (519)
T KOG0293|consen  350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRGL-ISEEQPITSFSISKDGKLALVNLQ----DQEIHLW  422 (519)
T ss_pred             cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhcc-ccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence            5543 45788887  56889999999999999999887655543 335568999999999999988765    4459999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEE
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV  639 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~  639 (1092)
                      |+.....++.+.||......|.++.-..+..++++||+|+.|+||+..+|+++..+.+|..  .|++++|+| +..++|+
T Consensus       423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~AS  500 (519)
T KOG0293|consen  423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFAS  500 (519)
T ss_pred             ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhc
Confidence            9999999999999996666677665566678999999999999999999999999998754  699999999 6678999


Q ss_pred             EeCCCeEEEEECCC
Q 001358          640 IANENRIKILETPE  653 (1092)
Q Consensus       640 ~~~dg~i~iw~~~~  653 (1092)
                      +++||+|+||-...
T Consensus       501 asDDgtIRIWg~~~  514 (519)
T KOG0293|consen  501 ASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCeEEEecCCc
Confidence            99999999997653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.5e-62  Score=470.93  Aligned_cols=492  Identities=18%  Similarity=0.287  Sum_probs=405.7

Q ss_pred             hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHh
Q 001358            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ   79 (1092)
Q Consensus         4 ~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q   79 (1092)
                      -..||||||.|||+|+.+++++++||+|++++||    ++.|-+.|.+|+||.+++.+++|      +++.+.+..||||
T Consensus         6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq   79 (508)
T KOG0275|consen    6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ   79 (508)
T ss_pred             ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence            3569999999999999999999999999999998    89999999999999999999998      6666678999999


Q ss_pred             hhhhhccCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCcc
Q 001358           80 NFFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPI  157 (1092)
Q Consensus        80 ~~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~  157 (1092)
                      ..|||+|.++...|..+||+.  ..-|++.+|++|-+|..||..+.++..+++.   +..++.|+   ..|.+.++.++-
T Consensus        80 ivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrR---a~IAQ~ls~EV~  153 (508)
T KOG0275|consen   80 IVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRR---AVIAQALSGEVH  153 (508)
T ss_pred             HHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHH---HHHHHHhcCceE
Confidence            999999999999999999983  3335677899999999999999998887733   24567776   444555555443


Q ss_pred             cccccCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCC
Q 001358          158 LQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSS  237 (1092)
Q Consensus       158 ~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~~~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (1092)
                              .+||+||+.||+||++||..+.+.|..+  ...||.                        .         ..
T Consensus       154 --------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFR------------------------G---------kA  190 (508)
T KOG0275|consen  154 --------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFR------------------------G---------KA  190 (508)
T ss_pred             --------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeecc------------------------c---------hh
Confidence                    2899999999999999999987766421  012222                        1         00


Q ss_pred             CCCcCcccccccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCc
Q 001358          238 SMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGET  317 (1092)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~~~~~~~~~~~~~~  317 (1092)
                                             .+|                   ...|..||.+..                       
T Consensus       191 -----------------------A~K-------------------~~~Ee~~Pt~l~-----------------------  205 (508)
T KOG0275|consen  191 -----------------------AMK-------------------DQEEERYPTQLA-----------------------  205 (508)
T ss_pred             -----------------------hhh-------------------hhHhhhchHHhh-----------------------
Confidence                                   000                   001223444432                       


Q ss_pred             cccCCCcceeEec-ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC
Q 001358          318 SFSDFPKTVAQTL-IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       318 ~~~~~p~~~~~~l-~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                                +.+ -|.+..+.|..|||||+ +|++|+.||.|.+||..+|+..+...++.-|           -+--+.
T Consensus       206 ----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMmd  263 (508)
T KOG0275|consen  206 ----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMMD  263 (508)
T ss_pred             ----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeecc
Confidence                      222 24456889999999999 6999999999999999999988765554322           134478


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      .+|.|+.||.|...||+|+.||.|++|.+++|.+++...  ++|+..|+|+.||.|+.  .+++++.|.+++|.-+++|+
T Consensus       264 ~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK  339 (508)
T KOG0275|consen  264 DAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGK  339 (508)
T ss_pred             cceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccch
Confidence            999999999999999999999999999999999988532  38999999999999999  59999999999999999999


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEecCC-CEEEEEecCCCC
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKEG  553 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~dg-~~l~~~~~~~~~  553 (1092)
                      +++.|+||+..|+...|  .+||..+++++.||+|++|+..+.++..++...+  .+|.++..-|.. ..+++|..    
T Consensus       340 ~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----  413 (508)
T KOG0275|consen  340 CLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----  413 (508)
T ss_pred             hHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----
Confidence            99999999999999998  5688999999999999999999999888776544  467787777754 56777754    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      .+++++.++ .|+.++.+.......+...+++.+|.|.++++.++|+.++.|...+|.+..++..|..  .+..++-+|.
T Consensus       414 sntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPH  490 (508)
T KOG0275|consen  414 SNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPH  490 (508)
T ss_pred             CCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcc
Confidence            566898886 4778888876655567788889999999999999999999999999999999988754  5788999999


Q ss_pred             CCEEEEEeCCCeEEEEE
Q 001358          634 GTLLAVIANENRIKILE  650 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~  650 (1092)
                      .+.+|+-+.||.+++|.
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            99999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-59  Score=501.01  Aligned_cols=576  Identities=18%  Similarity=0.248  Sum_probs=495.1

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCC
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  418 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~  418 (1092)
                      ++||++|+ +|++... ..|.+-|+.++... ...                  -......+++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s~------------------~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPSG------------------SNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCC-EEEEecC-ceEEEEEccCCceecccC------------------CccchhhhheeeecCCccEEEEeeccc
Confidence            89999999 6777654 45999999999873 211                  223567899999999999999999999


Q ss_pred             EEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC
Q 001358          419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  497 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~  497 (1092)
                      .+++|++.+|+.++   .++. |++||.-++|+|.+.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998777   5556 999999999999997  89999999999999999999999999999999999999998


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc
Q 001358          498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL  576 (1092)
Q Consensus       498 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~  576 (1092)
                      +...|++|..|+++++||+..... ...+..|...|++++|++|+..+++++.    +..+.+||..+.+..++++..+ 
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye-  234 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE-  234 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence            888999999999999999996555 6788889999999999999999999987    6679999998887777777654 


Q ss_pred             cCCceEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       577 ~~~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                         .+.++.+.++     +.++++++.+|.+++||.+++++........ ...+..+...+....++..+.|..+.++|.
T Consensus       235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence               6777888777     7799999999999999999998877665443 233666666666667777888899999999


Q ss_pred             CCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCc
Q 001358          652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  731 (1092)
Q Consensus       652 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~  731 (1092)
                      ++.+....+-|..+.|..+.|-                     .|+.+.++.++..+.+|+++..   ...|..+    .
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~  362 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----P  362 (775)
T ss_pred             cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEEE----e
Confidence            9999999999999999888886                     5788999999999999999655   3334422    4


Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001358          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      +|...|.++....+|-.+++++.|..+++|.++.+..                      .....-...+|.+.|.+++++
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~  420 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGS  420 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeec
Confidence            6999999999888899999999999999999843211                      000001122599999999998


Q ss_pred             cCC-CEEEEEe-CCeEEEEEcCCcee---------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358          812 KND-AYLFSAS-GGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1092)
Q Consensus       812 ~dg-~~l~~~s-dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1092)
                      ..+ .++++++ |+++++|++...+.         ..+...|...|++++++| +.+++|||+.|++.+||+++.+....
T Consensus       421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence            766 5777777 89999999976221         112356999999999999 88999999999999999999999999


Q ss_pred             eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcE
Q 001358          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  959 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v  959 (1092)
                      ++.||...|+++.|+|..+.+||+|.|++|+||.+++     ..++++++||..   .|..+.|-.+|+.|++ +.||-+
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence            9999999999999999999999999999999999999     448999999987   8999999999999998 799999


Q ss_pred             EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
                      ++|++.+++|... +.+|..+|+++.-++++.+++||+.||.|.+|.=.+
T Consensus       572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            9999999999998 779999999999999999999999999999996444

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-56  Score=475.95  Aligned_cols=589  Identities=13%  Similarity=0.179  Sum_probs=479.7

Q ss_pred             ccc-CCcCCCCCCCchhhhcccccCCccccCCCcce-e-EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC
Q 001358          292 VSL-KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-A-QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ  368 (1092)
Q Consensus       292 ~~~-~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~-~-~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~  368 (1092)
                      ++| |.-..|+|++..+...+.... ..++..+... + ..-.+-.+.+++++.+||++ .|.+++...-+++|++.+|+
T Consensus        18 piYtGG~~~~s~nG~~L~t~~~d~V-i~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk   95 (775)
T KOG0319|consen   18 PIYTGGPVAWSSNGQHLYTACGDRV-IIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGK   95 (775)
T ss_pred             ceecCCceeECCCCCEEEEecCceE-EEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccch
Confidence            344 445788888888776665310 0111112222 1 12234567899999999998 68899999999999999998


Q ss_pred             ceeeeeeeeeecccccceeEEeeecC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEE
Q 001358          369 KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL  447 (1092)
Q Consensus       369 ~~~~~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~  447 (1092)
                      .++.                   ++. |+.+|.-++|+|.|.+||+|+.|+.++|||+..+.+..   .|+||.+.|.++
T Consensus        96 ~irs-------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl  153 (775)
T KOG0319|consen   96 LIRS-------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSL  153 (775)
T ss_pred             HhHh-------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEE
Confidence            8765                   444 99999999999999999999999999999999986555   899999999999


Q ss_pred             EeeCCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001358          448 AFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1092)
Q Consensus       448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  526 (1092)
                      .|.|+-.+.+|++|+.|+++++||+.+... +..+..|...|+++++.+  |+..+++++.|..+.+||+...+...++.
T Consensus       154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp  231 (775)
T KOG0319|consen  154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLP  231 (775)
T ss_pred             EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheec
Confidence            999998876899999999999999996654 888999999999999954  67899999999999999996555444443


Q ss_pred             CCCCceEEEEEecC-----CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358          527 APGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       527 ~~~~~i~~~~~s~d-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~  601 (1092)
                      .. ..+.++.+-++     |.+++++|.    ++.+++||..+++++.......  ...+..+...+....++..+.|..
T Consensus       232 ~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQn  304 (775)
T KOG0319|consen  232 LY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQN  304 (775)
T ss_pred             hh-hheeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccce
Confidence            22 35666777676     678888875    6779999999998876665443  233677777777778888889999


Q ss_pred             EEEEECCCCceEEEEeCCCCCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                      +.++|.++.+....+-+..  ..|..|+|- |+.++++++++.+.+++|+..+..+. .+.+|.+.|.++...       
T Consensus       305 l~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~-------  374 (775)
T KOG0319|consen  305 LFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW-------  374 (775)
T ss_pred             EEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------
Confidence            9999999999888876543  468888875 68899999999999999998887665 889999999888743       


Q ss_pred             ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCc-EEEEeecCCeeE
Q 001358          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHL  759 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~  759 (1092)
                                     .+|-++++++.|.++++|.++.+..  .........+|.+.|.+++++..+. .+++++.|++++
T Consensus       375 ---------------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  375 ---------------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             ---------------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence                           4567899999999999999842211  1111223367999999999987664 567888899999


Q ss_pred             EeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEE
Q 001358          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT  838 (1092)
Q Consensus       760 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~  838 (1092)
                      +|+++..+....        +.         ..........|...|.|++++|+.+++|+|+ |.+.+||+++.+....+
T Consensus       438 ~W~l~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v  500 (775)
T KOG0319|consen  438 LWDLPKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV  500 (775)
T ss_pred             EecCCCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence            999987321100        01         1111122335999999999999999999999 89999999999999999


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                      +.+|...+.++.|+| ..+.+||+|.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|+++++
T Consensus       501 LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            999999999999999 8889999999999999999999999999999999999999999999999999999999999996


Q ss_pred             ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCC
Q 001358          919 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE  966 (1092)
Q Consensus       919 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~  966 (1092)
                      +     +..++..|..   .|.+++.+|++.++++ +.|+.|.+|.-.+
T Consensus       580 e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  580 E-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             h-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            6     7788888876   8999999999999998 6899999996443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.6e-52  Score=426.31  Aligned_cols=575  Identities=15%  Similarity=0.193  Sum_probs=461.9

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  417 (1092)
                      .-+.-.|.|+.++.+.+  +.|.+-++++......                   +++|...++-..|||.|-|+|+|...
T Consensus        22 ~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~s   80 (603)
T KOG0318|consen   22 IIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDVS   80 (603)
T ss_pred             eEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCCc
Confidence            34455688887777755  6788888887765433                   78899999999999999999999999


Q ss_pred             CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEE--eCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      |+|+|||....+.+- ..+++.-.++|..++|++|+++  ++..  +.++..+++-+++|..+..+.||...|+++.|-|
T Consensus        81 G~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp  157 (603)
T KOG0318|consen   81 GKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP  157 (603)
T ss_pred             CcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence            999999998743322 2356678899999999999995  4433  3444455555578889999999999999999977


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      +.. -++++|+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++.    ++.+++||-.+|+.+..+....
T Consensus       158 sRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~  232 (603)
T KOG0318|consen  158 SRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSD  232 (603)
T ss_pred             CCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCC
Confidence            643 57999999999999987777777778888889999999999999999987    6679999999999999999655


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCC-CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++........ ...+.|.  ...|++.+.+|.|.+++....
T Consensus       233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence            5669999999999999999999999999999999999999987654211 2234444  678999999999999999999


Q ss_pred             CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccc
Q 001358          655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  734 (1092)
Q Consensus       655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  734 (1092)
                      ..+..+.+|...|++++.+                      +|++++.+++.||.|.-|+...+...     .+...+|.
T Consensus       311 ~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~-----~~~g~~h~  363 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSD-----RLAGKGHT  363 (603)
T ss_pred             ChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccc-----cccccccc
Confidence            9999999999999999996                      78899999999999999998754333     23335599


Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      ..|.+++.+..+. +++.+.|.++++.++..+......                  .  .+     -.....+++..+++
T Consensus       364 nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d~  417 (603)
T KOG0318|consen  364 NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSDG  417 (603)
T ss_pred             ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCCC
Confidence            9999999988776 788888889988776543221110                  0  11     12233488999998


Q ss_pred             CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--eEeeccccCCeEEE
Q 001358          815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGL  892 (1092)
Q Consensus       815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l  892 (1092)
                      .+++.+.++.|.+..-.++  +..+. ..-...++|++| ++..+|+|+.||.|+||.+..+..  ...+..|.++|+++
T Consensus       418 ~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  418 GTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV  493 (603)
T ss_pred             CEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence            8888888766666542221  11221 334678999999 999999999999999999987653  34566799999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeee
Q 001358          893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK  971 (1092)
Q Consensus       893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~  971 (1092)
                      ++|||+.+||++...+.+.+||+.+.+... .....   |.   ..|.+++|||+.+++|+ +-|..|.||++.......
T Consensus       494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~F---Ht---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i  566 (603)
T KOG0318|consen  494 AYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWAF---HT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI  566 (603)
T ss_pred             EECCCCcEEEEeccCCcEEEEEcccCceec-ceeee---ee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence            999999999999999999999999976422 11111   22   37999999999999999 578999999999877666


Q ss_pred             eeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          972 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       972 ~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      ....+|...|+.+.|-. ...|++.+.|..|++|++.
T Consensus       567 ~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  567 IIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence            66788988899999975 4578999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-49  Score=423.84  Aligned_cols=578  Identities=15%  Similarity=0.211  Sum_probs=463.4

Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      .+.|++||..+++-..+ .|.++|+...+....   .-.+...|.+++.||+|.  ++++...+|...+-++.....++.
T Consensus        19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~Tl---~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~   92 (893)
T KOG0291|consen   19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYTL---PLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR   92 (893)
T ss_pred             cEEECCCCCEEEeccCC-EEEEEEccCCcceeE---EeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence            48899999999987555 499999998754432   224777899999999999  888899999999999888888888


Q ss_pred             EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      +. ...+|.+++|+|  ||.+++.+ ..+.+.+|.......        ..++.+|-..|.++.|+.|.+++++++.   
T Consensus        93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr---  165 (893)
T KOG0291|consen   93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR---  165 (893)
T ss_pred             Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence            75 677899999955  66666655 456899997654322        3356677789999999999999999986   


Q ss_pred             CceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------------------
Q 001358          553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------------------  609 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~---------------------  609 (1092)
                       |..+++|+++..+-  ...+.+|.   +.|.++.|..+...+++.+.||.+.+|....                     
T Consensus       166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~  241 (893)
T KOG0291|consen  166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD  241 (893)
T ss_pred             -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence             66799999876655  56677777   9999999999999999999999999997661                     


Q ss_pred             --Cce-----EE----EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358          610 --VQL-----LT----TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       610 --~~~-----~~----~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                        ++.     ..    ..-.......+++.+|++..+.|+++-..|.+.+|+++.-..+..+.....+|..++++.    
T Consensus       242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~----  317 (893)
T KOG0291|consen  242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNS----  317 (893)
T ss_pred             ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecc----
Confidence              111     00    111111224688999999999999999999999999999999999998888898888874    


Q ss_pred             ccccccCCceeecCCCCCCcccceeeccc-cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCe
Q 001358          679 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  757 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  757 (1092)
                                        .|.+++.|+.. |.+-+|+...      ..+.+...+|...+.+++++|||+++++|+.||.
T Consensus       318 ------------------tGDWiA~g~~klgQLlVweWqs------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK  373 (893)
T KOG0291|consen  318 ------------------TGDWIAFGCSKLGQLLVWEWQS------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK  373 (893)
T ss_pred             ------------------cCCEEEEcCCccceEEEEEeec------cceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence                              35555555443 7888998763      3455666779999999999999999999999999


Q ss_pred             eEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001358          758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  836 (1092)
Q Consensus       758 i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~  836 (1092)
                      |++|+                      ..+|.|+.+++    .|...|+.+.|+..|+.+++++ ||+|+.||+...+..
T Consensus       374 VKvWn----------------------~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  374 VKVWN----------------------TQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             EEEEe----------------------ccCceEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence            88876                      45677787766    3999999999999999999998 999999999999999


Q ss_pred             EEecCCCC-CeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358          837 LTIMPPSP-TATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       837 ~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      +++..+.. ...|++..| .|.++..|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|||+|.|++|++||
T Consensus       428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~  506 (893)
T KOG0291|consen  428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD  506 (893)
T ss_pred             eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence            99986653 568999999 899999999887 899999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeecc------------------
Q 001358          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------------  975 (1092)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~------------------  975 (1092)
                      +-..... ...++..       ..+..++|+|||+.||+ .-||.|.+||+..+..+..+-.                  
T Consensus       507 if~s~~~-vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~  578 (893)
T KOG0291|consen  507 IFSSSGT-VETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN  578 (893)
T ss_pred             eeccCce-eeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence            9764211 1122222       24889999999999999 6899999999987655533111                  


Q ss_pred             -CCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccc---------------------------------
Q 001358          976 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------------------------------- 1021 (1092)
Q Consensus       976 -~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~--------------------------------- 1021 (1092)
                       ......+.+++|+||.+|++||....|++|++.++.++++|.....                                 
T Consensus       579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~  658 (893)
T KOG0291|consen  579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG  658 (893)
T ss_pred             cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence             1257889999999999999999999999999999999888762111                                 


Q ss_pred             -----cCCCC----c----cCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358         1022 -----LRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1022 -----~~~~~----~----~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                           +|...    .    ...|....+.|+|. ++-+|++++.|. .||.+
T Consensus       659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsl  708 (893)
T KOG0291|consen  659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSL  708 (893)
T ss_pred             cccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEec
Confidence                 11100    0    11466678999994 788999988884 34444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.3e-50  Score=425.54  Aligned_cols=586  Identities=17%  Similarity=0.206  Sum_probs=453.4

Q ss_pred             cCCCCCCCchhhhcccccCCccccCCCcceeEecc-cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeee
Q 001358          297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF  375 (1092)
Q Consensus       297 ~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~  375 (1092)
                      -+.|+|.+..+...-  .+...+.++.+....+|. .+...|++++.||+|. +|++....|...+-++.....++.+++
T Consensus        19 nl~ft~dG~sviSPv--GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f   95 (893)
T KOG0291|consen   19 NLVFTKDGNSVISPV--GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF   95 (893)
T ss_pred             cEEECCCCCEEEecc--CCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee
Confidence            466666643332111  123344555555555554 4556999999999998 666667788999999888877765443


Q ss_pred             eeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC-----ccceEEecccccceeEEEee
Q 001358          376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFS  450 (1092)
Q Consensus       376 ~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s  450 (1092)
                                          +.+|.|+.|||||+++|+|..+ .+.||.......     .....++.+|...|.++.|+
T Consensus        96 --------------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws  154 (893)
T KOG0291|consen   96 --------------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWS  154 (893)
T ss_pred             --------------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEec
Confidence                                3789999999999999998654 699998764322     23344677899999999999


Q ss_pred             CCCCcEEEEEEeCCCcEEEEECCCCce--eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC----------
Q 001358          451 APCKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS----------  518 (1092)
Q Consensus       451 ~d~~~l~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~----------  518 (1092)
                      .|++  ++++|+.|.++++|+++..+-  .+.+.+|...|.++-|.  .|...+++.+.||.+.+|..+.          
T Consensus       155 ~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~k  230 (893)
T KOG0291|consen  155 DDSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEK  230 (893)
T ss_pred             cCCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccc
Confidence            9999  899999999999999887665  57788999999988774  4567899999999999997761          


Q ss_pred             -------------CCc-----------eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358          519 -------------LGA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       519 -------------~~~-----------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                                   .+.           ..-+......+++.+|++..+.|+++..    .+...++++....+++.+.-.
T Consensus       231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis  306 (893)
T KOG0291|consen  231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSIS  306 (893)
T ss_pred             cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecc
Confidence                         111           0011222357899999999999999876    445889999999999998876


Q ss_pred             cccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      .   .+|..++|+..|.+++.|+ .-|.+.||+..+..-+...+  +|...+.+++++|||+++|+|++||.|+|||...
T Consensus       307 ~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  307 D---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             c---ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence            6   7999999999999999976 45899999998877665555  4466899999999999999999999999999998


Q ss_pred             CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccc
Q 001358          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  733 (1092)
                      +-++.++..                                                                      |
T Consensus       382 gfC~vTFte----------------------------------------------------------------------H  391 (893)
T KOG0291|consen  382 GFCFVTFTE----------------------------------------------------------------------H  391 (893)
T ss_pred             ceEEEEecc----------------------------------------------------------------------C
Confidence            877665543                                                                      6


Q ss_pred             cccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001358          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  813 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d  813 (1092)
                      .+.|+.+.|+..|+.+++.+-||+++.||+...                      .+..++..+   ......|++..|.
T Consensus       392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~QfscvavD~s  446 (893)
T KOG0291|consen  392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQFSCVAVDPS  446 (893)
T ss_pred             CCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---CceeeeEEEEcCC
Confidence            667777888888888888888888888876542                      223333332   3456678999999


Q ss_pred             CCEEEEEe-C-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeeEeeccccCCeE
Q 001358          814 DAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVT  890 (1092)
Q Consensus       814 g~~l~~~s-d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~  890 (1092)
                      |.++..|+ | -.|.+|++++|+.+..+.+|.++|.+++|+| ++..||+|+.|++|++||+-.. ..+.++. +...+.
T Consensus       447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl  524 (893)
T KOG0291|consen  447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVL  524 (893)
T ss_pred             CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-ecccee
Confidence            99998887 4 4599999999999999999999999999999 8999999999999999998654 3455665 778899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCceee----eeeee--------cCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001358          891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----CRSLQ--------TPDGVMTLAPSETHIQFHKDQTRFLL-VHET  957 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~----~~~~~--------~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~  957 (1092)
                      .++|+|||+.||+++-||.|.+||.+.+....    .+-+.        ....+.......+.+++|+||.+|++ |..+
T Consensus       525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn  604 (893)
T KOG0291|consen  525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN  604 (893)
T ss_pred             EEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence            99999999999999999999999987654321    00000        00001111146899999999999998 6778


Q ss_pred             cEEEEEcCCceeeeeeccC-------------------------------------------------------CCcCEE
Q 001358          958 HLAIYEAEELTCLKQWFPI-------------------------------------------------------SSVPIS  982 (1092)
Q Consensus       958 ~v~lwd~~~~~~~~~~~~~-------------------------------------------------------h~~~v~  982 (1092)
                      .|+||++.++..++.+...                                                       ..-.|.
T Consensus       605 ~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~  684 (893)
T KOG0291|consen  605 SICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVT  684 (893)
T ss_pred             cEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEE
Confidence            9999999887655442111                                                       022578


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 001358          983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       983 ~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ++.|||.|+-++.++..| +.||.+.+.-...-+.
T Consensus       685 sv~fsPtgraFAaatTEG-l~IYsld~~~~FDPf~  718 (893)
T KOG0291|consen  685 SVQFSPTGRAFAAATTEG-LLIYSLDTTILFDPFD  718 (893)
T ss_pred             EEEECCCcCeeeeecccc-eEEEecCCceEEcccc
Confidence            899999999999999887 8899998876654443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-49  Score=407.16  Aligned_cols=541  Identities=12%  Similarity=0.202  Sum_probs=434.9

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ...+.+|...++-..|||.|- ++|+|...|.|+|||....+.+...+|++                 -.++|..++|++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v-----------------~aG~I~Di~Wd~  113 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQV-----------------LAGPIKDISWDF  113 (603)
T ss_pred             eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeee-----------------cccccccceeCC
Confidence            567789999999999999996 79999999999999998876666555442                 457999999999


Q ss_pred             CCCEEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          407 DGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       407 dg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      |+++|++.+.  ++..+++-+++|..+.   ++.||...|.+++|-|.... .++||+.|++|.+|+-.--+...+++.|
T Consensus       114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H  189 (603)
T KOG0318|consen  114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH  189 (603)
T ss_pred             CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence            9999988754  3334444444554445   68899999999999997765 8999999999999986666777788899


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      ...|+++.|+|  ||.++++++.||++.+||=.+++....+.   .|.+.|.+++|+||++.+++++.    +.++++||
T Consensus       190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd  263 (603)
T KOG0318|consen  190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD  263 (603)
T ss_pred             ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence            99999999954  78999999999999999999999888887   78899999999999999999987    66799999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      ..+.++++++.....-.+....+.|.  +..|++.+.+|+|.+++...+..+..+.+|.  ..|++++.+|++++|.+|+
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs  339 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS  339 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence            99999999987654222344445565  5689999999999999999999888888764  4799999999999999999


Q ss_pred             CCCeEEEEECCCCCeeeec-ccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccC
Q 001358          642 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  720 (1092)
Q Consensus       642 ~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  720 (1092)
                      .||.|.-|+...+..-... ++|...|.+++.+                       +...+++.+.|.++++.++.....
T Consensus       340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence            9999999999988665544 6788888887775                       235678889999999987643322


Q ss_pred             ccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCC
Q 001358          721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  800 (1092)
Q Consensus       721 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  800 (1092)
                      .......+     .....+++..+++..++.+...+.+.+-+...                         +...     .
T Consensus       397 t~~~~~~l-----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~  441 (603)
T KOG0318|consen  397 TKSEVVKL-----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----P  441 (603)
T ss_pred             cccceeec-----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----c
Confidence            22221111     12233788888887666666555544422211                         1111     1


Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358          801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      -.....+++++|++..+++|+ |+.++||.+..+..  ...+..|.++|++++||| |+.+||+|...+.|.+||+.+.+
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence            345678999999999999998 79999999987553  335667999999999999 99999999999999999999987


Q ss_pred             eeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC
Q 001358          878 VISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  956 (1092)
Q Consensus       878 ~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d  956 (1092)
                      .... +.-|++.|.+++|||+.+++||||-|-.|.||+++....    .+.....|..   .|..++|-.+...+-+|.|
T Consensus       521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~~---gVn~v~wlde~tvvSsG~D  593 (603)
T KOG0318|consen  521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHLG---GVNSVAWLDESTVVSSGQD  593 (603)
T ss_pred             eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEecccccc---CceeEEEecCceEEeccCc
Confidence            6433 334999999999999999999999999999999997432    2444445554   5999999999988888999


Q ss_pred             CcEEEEEcC
Q 001358          957 THLAIYEAE  965 (1092)
Q Consensus       957 ~~v~lwd~~  965 (1092)
                      ..|++|++.
T Consensus       594 a~iK~W~v~  602 (603)
T KOG0318|consen  594 ANIKVWNVT  602 (603)
T ss_pred             ceeEEeccc
Confidence            999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-48  Score=415.57  Aligned_cols=575  Identities=16%  Similarity=0.188  Sum_probs=446.3

Q ss_pred             CceEEee-cCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          336 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~-spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ++..+.. +..|+++.+++  -..|.+||+.+|+......                 .......|+|++-+||.-+||+|
T Consensus        23 N~~~~~~~~~~Gr~va~~a--~E~vn~WdlRtge~~~~l~-----------------~~~~k~evt~l~~~~d~l~lAVG   83 (888)
T KOG0306|consen   23 NINFVVKRSGKGRAVAVSA--LEQVNIWDLRTGEIEKKLI-----------------LLKKKAEVTCLRSSDDILLLAVG   83 (888)
T ss_pred             ceeEEEeecCCCcEEEEec--cccEeEEeeecchhhhhhh-----------------hhcccceEEEeeccCCcceEEEE
Confidence            4444433 34687433323  3689999999996554211                 22344689999999999999999


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~  494 (1092)
                      ..||.|+||+..++....   ++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..+.||...|+.+-|.
T Consensus        84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            999999999999875443   7889999999999999999  89999999999999999988999999999999988875


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC---------
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG---------  565 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~---------  565 (1092)
                      .  +..++++.+.|+.|++||+.+..+..+...|.+.+..+++.+  +.+++++.    +..+.+|++...         
T Consensus       159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~  230 (888)
T KOG0306|consen  159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY  230 (888)
T ss_pred             C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence            4  457999999999999999999999999999999999999988  67777765    445999988211         


Q ss_pred             ---eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE--------------EE-EeC---------
Q 001358          566 ---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--------------TT-IDA---------  618 (1092)
Q Consensus       566 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~--------------~~-~~~---------  618 (1092)
                         +...++...  ..+....+...+++.++++-+.|..+.++.+.+.+.+              .. -..         
T Consensus       231 ~s~~~~G~~~rq--sk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  231 ISTKLRGTFIRQ--SKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ceeeccceeeec--cCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence               011122221  1345556677788888999999999999987653211              00 000         


Q ss_pred             --------CCCCCCCceEEEccCCC---EEEEEeCCCeEEEEECCCCCee---------eecccccccceeeeecCCccc
Q 001358          619 --------GGGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       619 --------~~~~~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                              -.....+.++.|-|.++   .|+. -.++++..|.++.....         ..+.+|...|.+++++.    
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~----  383 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS----  383 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec----
Confidence                    00112356677776443   2333 56778888887753222         34568888898888873    


Q ss_pred             ccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001358          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  758 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  758 (1092)
                                        |...++++ ..+.+++|+..+..   |....     ..+.+.+..|-|.+++++.|..+|.+
T Consensus       384 ------------------d~~~~~Sg-a~~SikiWn~~t~k---ciRTi-----~~~y~l~~~Fvpgd~~Iv~G~k~Gel  436 (888)
T KOG0306|consen  384 ------------------DSILLASG-AGESIKIWNRDTLK---CIRTI-----TCGYILASKFVPGDRYIVLGTKNGEL  436 (888)
T ss_pred             ------------------Cceeeeec-CCCcEEEEEccCcc---eeEEe-----ccccEEEEEecCCCceEEEeccCCce
Confidence                              33334444 44789999977432   22211     33478889999999999999999999


Q ss_pred             EEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC-----
Q 001358          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT-----  832 (1092)
Q Consensus       759 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~-----  832 (1092)
                      .+|++.....                      +-+.    ..|.+.+.+++.+||++.+++++ |.+|++||..-     
T Consensus       437 ~vfdlaS~~l----------------------~Eti----~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  437 QVFDLASASL----------------------VETI----RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP  490 (888)
T ss_pred             EEEEeehhhh----------------------hhhh----hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence            9999765421                      1111    14999999999999999999998 89999999752     


Q ss_pred             ceeeEEe-------cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358          833 FKTILTI-------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       833 ~~~~~~~-------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                      +...+.+       -.-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-||.||..|||+++++|||
T Consensus       491 gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS  569 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS  569 (888)
T ss_pred             cccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc
Confidence            2111111       12456899999999 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEE
Q 001358          906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQA  984 (1092)
Q Consensus       906 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l  984 (1092)
                      .|+.|+||-++-|.     |.+.+-+|..   .|.++.|-|+..++.+ |.|+.|+-||....+++.. +.+|...|+++
T Consensus       570 ADKnVKiWGLdFGD-----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cL  640 (888)
T KOG0306|consen  570 ADKNVKIWGLDFGD-----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCL  640 (888)
T ss_pred             CCCceEEeccccch-----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeee
Confidence            99999999998865     5556666655   7999999998888777 7999999999999999987 77899999999


Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCce
Q 001358          985 TFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       985 ~fs~dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
                      +.+|+|.+++++|.|.+|++|.-....+
T Consensus       641 av~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  641 AVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             EEcCCCCeEEeccCCceeEeeeccCcce
Confidence            9999999999999999999999877444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-48  Score=415.14  Aligned_cols=503  Identities=15%  Similarity=0.239  Sum_probs=397.2

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      +.+|+|+.-+||.- +||+|..||.|+||+..++..+.+                   +.||...|+++.|...|..||+
T Consensus        65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS  124 (888)
T KOG0306|consen   65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS  124 (888)
T ss_pred             cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence            45899999999986 899999999999999998866654                   7899999999999999999999


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~  493 (1092)
                      ||.|+.|.+||+-....+.   .+.||...|+.+-|..+.+  ++++.+.|+.|++||+++..|..+.-.|.+.+..+++
T Consensus       125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~  199 (888)
T KOG0306|consen  125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL  199 (888)
T ss_pred             cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence            9999999999998754333   6889999999999998777  8999999999999999999999999999999999999


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCce------E-------EecCCCCceEEEEEecCCCEEEEEecCC---------
Q 001358          494 HAKENIHFIFSISVDGKIKAWLYDSLGAR------V-------DYDAPGLGCTRMAYSANGRRLFSCGTSK---------  551 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~---------  551 (1092)
                      ..    ..+++++.|+.+++|++....-.      .       ......+....++..++++++++-+.+.         
T Consensus       200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s  275 (888)
T KOG0306|consen  200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS  275 (888)
T ss_pred             ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence            54    58999999999999998211000      0       0000111122233333344333332211         


Q ss_pred             -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001358          552 -----------------------------------------------------------------EGESFLVEWNESE-G  565 (1092)
Q Consensus       552 -----------------------------------------------------------------~~~~~i~iwd~~~-~  565 (1092)
                                                                                       -.++.+..+.+.. +
T Consensus       276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~  355 (888)
T KOG0306|consen  276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG  355 (888)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence                                                                             0022333343332 1


Q ss_pred             eE--------EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001358          566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1092)
Q Consensus       566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  637 (1092)
                      ..        --.+.||.   ..|.+++++.+...+++| ..+.+.||+..+.+++.++...    .+.+..|-|.++++
T Consensus       356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I  427 (888)
T KOG0306|consen  356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI  427 (888)
T ss_pred             CCCccccccceeeeccch---hheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence            11        12345555   899999999887655555 4578999999999999999754    47889999999999


Q ss_pred             EEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358          638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1092)
                      ++|...|.+.+||+.....+...+.|.+.++.++..                      ||++..++++.|.+|++|++..
T Consensus       428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~l  485 (888)
T KOG0306|consen  428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFKL  485 (888)
T ss_pred             EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEEE
Confidence            999999999999999988888888777777766664                      5666677777777777777541


Q ss_pred             ccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC
Q 001358          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1092)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  797 (1092)
                      ....       |              ...+.++..-.                                    ..+.   
T Consensus       486 ~~~~-------~--------------gt~~k~lsl~~------------------------------------~rtL---  505 (888)
T KOG0306|consen  486 VVSV-------P--------------GTQKKVLSLKH------------------------------------TRTL---  505 (888)
T ss_pred             Eecc-------C--------------cccceeeeecc------------------------------------ceEE---
Confidence            1000       0              00000000000                                    1111   


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358          798 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       798 ~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                        .-...|.|+.+||||++||++- |++++||-+.+.+....+.+|.-+|.|+.+|| |+++++||+.|+.|+||-++-|
T Consensus       506 --el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  506 --ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             --eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc
Confidence              1467899999999999999997 99999999999999999999999999999999 9999999999999999999999


Q ss_pred             eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee
Q 001358          877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH  955 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~  955 (1092)
                      .|.+.+-+|.+.|.++.|.|+...+.++|.|+.|+-||-+.     ...++.+.+|..   .|.+++.+|+|.++++ +.
T Consensus       583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-----Fe~iq~L~~H~~---ev~cLav~~~G~~vvs~sh  654 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-----FEEIQKLDGHHS---EVWCLAVSPNGSFVVSSSH  654 (888)
T ss_pred             hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh-----hhhheeeccchh---eeeeeEEcCCCCeEEeccC
Confidence            99999999999999999999999999999999999999887     447788888876   8999999999999999 68


Q ss_pred             CCcEEEEEcCC
Q 001358          956 ETHLAIYEAEE  966 (1092)
Q Consensus       956 d~~v~lwd~~~  966 (1092)
                      |.+|++|.-..
T Consensus       655 D~sIRlwE~td  665 (888)
T KOG0306|consen  655 DKSIRLWERTD  665 (888)
T ss_pred             CceeEeeeccC
Confidence            89999998765

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-50  Score=397.19  Aligned_cols=333  Identities=20%  Similarity=0.316  Sum_probs=305.0

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ..|...+.||.+.|-|++|+|+|+ .||+|+.|.++++||+.+..+.++                   .++|...|.|++
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva  164 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA  164 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence            467789999999999999999998 599999999999999999988876                   889999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC-----CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-----d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      |||||+.||+|+.||+|++||.++|+++..  .+.+|...|++++|-|     ..+  +|++++.||+|+|||+..+.++
T Consensus       165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence            999999999999999999999999987754  5889999999999965     556  7999999999999999999999


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-----------CC------
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-----------NG------  541 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-----------dg------  541 (1092)
                      ..+.+|+.+|+|++|-  + ..++++|+.|++|++|+...+.....+.+|.+.|+.++.+.           .+      
T Consensus       241 ~~lsgHT~~VTCvrwG--G-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWG--G-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEeccCccceEEEEEc--C-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            9999999999999983  2 35999999999999999999889999999999999998872           23      


Q ss_pred             -------------------CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358          542 -------------------RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       542 -------------------~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~  601 (1092)
                                         .+|++++.    +.++++|+... .+++....+|.   ..|+.+.|+||+.++++++.|..
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence                               34888875    67799999864 45788889998   89999999999999999999999


Q ss_pred             EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccc
Q 001358          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  681 (1092)
                      |++||..+|+.+.++.+|  ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++        
T Consensus       391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws--------  460 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS--------  460 (480)
T ss_pred             eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence            999999999999999866  5679999999999999999999999999999999999999999999999996        


Q ss_pred             cccCCceeecCCCCCCcccceeeccccccceec
Q 001358          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  714 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~  714 (1092)
                                    |||..+++|+.|..+++|.
T Consensus       461 --------------pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 --------------PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --------------CCCceeecCCCceEEEeec
Confidence                          7899999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-49  Score=391.08  Aligned_cols=367  Identities=20%  Similarity=0.297  Sum_probs=296.8

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.||.++|.|++|+|+|++||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .|++|+.||+|++||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD  185 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence            77999999999999999999999999999999999986555   8899999999999999999  899999999999999


Q ss_pred             CCCCcee-EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       472 ~~~~~~~-~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .++|+++ ..+.+|..+|++++|.|-                                       ...|..++|++++. 
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk-  225 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK-  225 (480)
T ss_pred             CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence            9999876 678999999999998552                                       23366667777765 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         ++.++|||...+.++..+.+|.   .+|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+  .|+.++.
T Consensus       226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal  296 (480)
T KOG0271|consen  226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL  296 (480)
T ss_pred             ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence               5558889988899999999999   999999998764 899999999999999999999999998876  5888888


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +-|- .|-+|..|.+        +.......    .....+......                                 
T Consensus       297 sTdy-~LRtgaf~~t--------~~~~~~~s----e~~~~Al~rY~~---------------------------------  330 (480)
T KOG0271|consen  297 STDY-VLRTGAFDHT--------GRKPKSFS----EEQKKALERYEA---------------------------------  330 (480)
T ss_pred             cchh-hhhccccccc--------cccCCChH----HHHHHHHHHHHH---------------------------------
Confidence            7542 2223332221        11100000    000001100000                                 


Q ss_pred             ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc
Q 001358          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1092)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1092)
                                                    ..-..++++++++.|.++.+|+-...+                     ++
T Consensus       331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~k---------------------kp  359 (480)
T KOG0271|consen  331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKSK---------------------KP  359 (480)
T ss_pred             ------------------------------hhccCcceeEEecCCceEEEecccccc---------------------cc
Confidence                                          001123456777777777776532211                     00


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001358          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  869 (1092)
Q Consensus       791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~  869 (1092)
                      +.  .+.  +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++
T Consensus       360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK  434 (480)
T ss_pred             hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence            11  111  4999999999999999999999 99999999999999999999999999999999 999999999999999


Q ss_pred             EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358          870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      +|++.+.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus       435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2e-41  Score=357.87  Aligned_cols=622  Identities=14%  Similarity=0.149  Sum_probs=415.4

Q ss_pred             ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE--
Q 001358          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--  414 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~--  414 (1092)
                      -..++-+|-.. ++|. -....|.+||+.....-+                   ++..|..+++|+|||++|+|+|+|  
T Consensus        40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc   98 (1080)
T KOG1408|consen   40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC   98 (1080)
T ss_pred             CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence            34566677665 3443 123688999988765443                   266788999999999999999998  


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcceEEEe
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~i~  492 (1092)
                      +....+++|++..-..+.   ++..|...|+|++|+|.++  ++++.+.  |-.|.+||++.......-+ -...|..++
T Consensus        99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~  172 (1080)
T KOG1408|consen   99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA  172 (1080)
T ss_pred             CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence            366679999999876555   6788999999999999999  6777664  4467889887654433222 345677888


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceE-E--ecCCCCceEEEEEe------------cCCCEEEEEecCCCCceeE
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-D--YDAPGLGCTRMAYS------------ANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~--~~~~~~~i~~~~~s------------~dg~~l~~~~~~~~~~~~i  557 (1092)
                      |  ++||.++++.+ ...|++|-++...... .  +.+...-.-.+.+.            .+..+.++.      .+.+
T Consensus       173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL  243 (1080)
T KOG1408|consen  173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL  243 (1080)
T ss_pred             E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence            8  67888888876 5689999887665221 1  11110000000000            011111111      1112


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC------------------
Q 001358          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------------------  619 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~------------------  619 (1092)
                      .-+  .+.+++.....-.  .....|++.+  .+++++|+.+|.|++|+..+-....+++..                  
T Consensus       244 vEF--SsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s  317 (1080)
T KOG1408|consen  244 VEF--SSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS  317 (1080)
T ss_pred             eee--chhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence            111  1122211111111  1234555554  578999999999999998775544433211                  


Q ss_pred             ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee---ecccccccceeeeecCCcccccccccCCceeecC
Q 001358          620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD---AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                          ...+...++.|++....|.+...|..++|||+++...+.   .+--|...|+.+..-|.......     ...   
T Consensus       318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~-----~ac---  389 (1080)
T KOG1408|consen  318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPT-----AAC---  389 (1080)
T ss_pred             ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcc-----ccc---
Confidence                122334568899999999999999999999998764433   34457777777665542111000     000   


Q ss_pred             CCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCc
Q 001358          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~  772 (1092)
                        -|.+ -+++++.|++||+|+++..........             =.++.+-..++..  |+...+..          
T Consensus       390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR-------------Nils~~l~ki~y~--d~~~q~~~----------  441 (1080)
T KOG1408|consen  390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR-------------NILSANLSKIPYE--DSTQQIMH----------  441 (1080)
T ss_pred             --CCcc-ceeEecCCCcEEEeecccccccceeec-------------ccchhhhhcCccc--cCchhhhh----------
Confidence              1222 378999999999999875322211100             0011111001111  11000000          


Q ss_pred             ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEE
Q 001358          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF  851 (1092)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~  851 (1092)
                          ....-++|-....      .  .+....++++++||+|++||+|. .|.++||++...+....+..|..+|.|+.|
T Consensus       442 ----d~~~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey  509 (1080)
T KOG1408|consen  442 ----DASAGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY  509 (1080)
T ss_pred             ----hccCCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence                0001111111100      0  02567899999999999999998 599999999999999999999999999999


Q ss_pred             cCC--CCCEEEEEeCCCeEEEEEcCC-ceeeEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001358          852 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSL  926 (1092)
Q Consensus       852 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  926 (1092)
                      |..  ..++||+++.|..|.|||+.. ..++.++.+|+..|+++.|.-.|  ..++++|.|+.|.+--.....  .. .+
T Consensus       510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~g-~~  586 (1080)
T KOG1408|consen  510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--SG-RL  586 (1080)
T ss_pred             cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--Cc-ee
Confidence            853  357999999999999999965 46789999999999999998887  789999999976543322100  00 11


Q ss_pred             ecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001358          927 QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus       927 ~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~Dg~i~ 1003 (1092)
                      -.-..+......+..++..|..+++++ +.|..|+|||+.+|+..+.+...  |.+..-.+...|.|-||++...|.++.
T Consensus       587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~  666 (1080)
T KOG1408|consen  587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC  666 (1080)
T ss_pred             ccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence            111111111246889999999999999 78999999999999999886654  467777889999999999999999999


Q ss_pred             EEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358         1004 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1004 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      ++|..+|++++++.        .|+..|.  .+.|.+ |...|++++.||.|.||.++.
T Consensus       667 ~~Df~sgEcvA~m~--------GHsE~VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  667 FVDFVSGECVAQMT--------GHSEAVT--GVKFLN-DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEEeccchhhhhhc--------Ccchhee--eeeecc-cchhheeecCCceEEEEECch
Confidence            99999999998887        3455555  467887 579999999999999999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-40  Score=351.96  Aligned_cols=509  Identities=15%  Similarity=0.183  Sum_probs=380.7

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      +.+..|...++|+|||++|+ ++|+|-  ....++||++..-..+..                   +..|+-.|+|++|+
T Consensus        72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs  131 (1080)
T KOG1408|consen   72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS  131 (1080)
T ss_pred             heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence            45567778999999999998 689986  456799999998776654                   66799999999999


Q ss_pred             CCCCEEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE----
Q 001358          406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----  479 (1092)
Q Consensus       406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~----  479 (1092)
                      |.++|+++.+.  |-.|.+||+.......    -..-...|.+++|+.||.  +++|.+ ...|++|.++.++...    
T Consensus       132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP  204 (1080)
T KOG1408|consen  132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP  204 (1080)
T ss_pred             CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence            99999998764  5568899887543222    123456799999999999  788888 5689999887665210    


Q ss_pred             ---------EEe------------------------cC-----------------CcceEEEeecccCCccEEEEEecCC
Q 001358          480 ---------SFE------------------------GH-----------------GAPVYSLCPHAKENIHFIFSISVDG  509 (1092)
Q Consensus       480 ---------~~~------------------------~~-----------------~~~v~~i~~~~~~~~~~l~s~~~dg  509 (1092)
                               .++                        ||                 +..-+++++    +.+++++|+.+|
T Consensus       205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g  280 (1080)
T KOG1408|consen  205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG  280 (1080)
T ss_pred             ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence                     000                        00                 011123333    346899999999


Q ss_pred             eEEEEEcCCCCceEEecC--------------------C----CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          510 KIKAWLYDSLGARVDYDA--------------------P----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       510 ~i~vwd~~~~~~~~~~~~--------------------~----~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .|++++..+..-..++..                    .    -.....+.|++....|.+...    +..+++||++.-
T Consensus       281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~  356 (1080)
T KOG1408|consen  281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV  356 (1080)
T ss_pred             eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence            999998765432222110                    0    012356778888888888765    677999999876


Q ss_pred             eEEEEEeeccccCCceEEEEEcCC-----------CCEEEEEeCCCeEEEEECCCCceEEEE-------------e----
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D----  617 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~s~dg~i~iwd~~~~~~~~~~-------------~----  617 (1092)
                      +.+......-.|...|+.+.--|-           ...+++++.|++||+|+++.+..-..+             .    
T Consensus       357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~  436 (1080)
T KOG1408|consen  357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST  436 (1080)
T ss_pred             ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence            554433322223366666654441           235889999999999999763211100             0    


Q ss_pred             ------------------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccc
Q 001358          618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  679 (1092)
Q Consensus       618 ------------------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  679 (1092)
                                        .-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++-..   
T Consensus       437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~---  513 (1080)
T KOG1408|consen  437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV---  513 (1080)
T ss_pred             hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence                              00122458899999999999999999999999999999999999999999999998321   


Q ss_pred             cccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCC--cEEEEeecCCe
Q 001358          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV  757 (1092)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~  757 (1092)
                                      -..++|++++.|.-|.++|...     .+.+.....+|...|+++.|.-.|  ..+++++.|..
T Consensus       514 ----------------~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  514 ----------------LTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             ----------------hhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence                            1357899999999999999652     233333446799999999999888  78899999977


Q ss_pred             eEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee
Q 001358          758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  836 (1092)
Q Consensus       758 i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~  836 (1092)
                      +.+-..+..                   .+|.......-+  -....+..+++.|..++++++. |..|+||++++++..
T Consensus       573 imFr~~qk~-------------------~~g~~f~r~t~t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~  631 (1080)
T KOG1408|consen  573 IMFRVNQKA-------------------SSGRLFPRHTQT--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV  631 (1080)
T ss_pred             hheehhccc-------------------cCceeccccccc--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence            765322211                   011111110000  1345678999999999999998 799999999999999


Q ss_pred             EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001358          837 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  913 (1092)
Q Consensus       837 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iw  913 (1092)
                      +.|++   |.+....+...| .+-|||+.+.|+++.++|..+|+++.+..||+..|+.+.|++|-+.|++++.||.|.||
T Consensus       632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence            99975   556788999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCC
Q 001358          914 DVDG  917 (1092)
Q Consensus       914 d~~~  917 (1092)
                      .+..
T Consensus       711 ~lp~  714 (1080)
T KOG1408|consen  711 KLPL  714 (1080)
T ss_pred             ECch
Confidence            9864

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=9.5e-39  Score=338.65  Aligned_cols=643  Identities=15%  Similarity=0.169  Sum_probs=435.6

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC---EEEEEeC
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS  416 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~---~las~~~  416 (1092)
                      ..|.|.+  ++|.|.. ..|.+||........                   .+.||..+|+|+.|-|+.+   ++++|+.
T Consensus        20 ~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s   77 (764)
T KOG1063|consen   20 SSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS   77 (764)
T ss_pred             ccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence            3456666  4666543 789999987653333                   2889999999999999888   8999999


Q ss_pred             CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcceEEE--e
Q 001358          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSL--C  492 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~i--~  492 (1092)
                      |+.|.+|.++. +.+.....+.+|...+.|+.  ....  ...+...|+++.+||.+..+  ++..+.-....+..+  +
T Consensus        78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv~--a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~  152 (764)
T KOG1063|consen   78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCVV--ARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA  152 (764)
T ss_pred             CCcEEEEEEee-hheEEEEeecCcceeEEEEE--eeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence            99999999993 44555567777766655554  3222  22223789999999985555  333443333333333  3


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEecCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA-  566 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~-  566 (1092)
                      +.+.++.-.++.|+.+..|.++.-...  .....+.+|...|.+++|...+.   +|++++.    |..|++|.+.-+. 
T Consensus       153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~  228 (764)
T KOG1063|consen  153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDD  228 (764)
T ss_pred             hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCC
Confidence            444334345666777788888855433  34568899999999999987655   4455543    7889999764322 


Q ss_pred             --------------------EE----------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEE
Q 001358          567 --------------------IK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT  614 (1092)
Q Consensus       567 --------------------~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~  614 (1092)
                                          ..          ..+.||.   +.|+++.|+|.+..|++++.|.++.+|...+.  --+.
T Consensus       229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~  305 (764)
T KOG1063|consen  229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD  305 (764)
T ss_pred             ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence                                11          1123666   99999999999999999999999999987654  3333


Q ss_pred             EEeC---CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC---CeeeecccccccceeeeecCCcccccccccCCce
Q 001358          615 TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1092)
Q Consensus       615 ~~~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  688 (1092)
                      ....   .+........-|+|+++.+++-+..|..++|...+.   .....+.||...|..+++.               
T Consensus       306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~---------------  370 (764)
T KOG1063|consen  306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD---------------  370 (764)
T ss_pred             EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence            3221   122234678999999999999999999999994443   3344567999999999996               


Q ss_pred             eecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCcc
Q 001358          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL  768 (1092)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~  768 (1092)
                             |.|.++++.+.|.+-|+|-.- +.......+..|+ .|...+.++++-+..-.+++++....+++|+.+..-.
T Consensus       371 -------psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQ-iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  371 -------PSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQ-IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             -------CCCCEEEEeccccceeeeccc-ccccceeeecccc-cccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence                   678899999999999998754 2222244444443 5899999999999666688888899999999765421


Q ss_pred             ccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE-EEEeCCe--E-----------EEEEcC---
Q 001358          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL-FSASGGV--I-----------SLYIVM---  831 (1092)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l-~~~sdg~--i-----------~iwd~~---  831 (1092)
                      .            ......|.+....+..  .....|..+-.|...-+. .+-+.+.  +           .+....   
T Consensus       442 ~------------~l~~i~g~~~~~~~~~--p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Ed  507 (764)
T KOG1063|consen  442 K------------SLMAICGKCFKGSDEL--PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTED  507 (764)
T ss_pred             H------------HHHHHhCccccCchhc--ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHH
Confidence            0            0000001000000000  012222233333221111 0000011  0           000000   


Q ss_pred             ------CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE
Q 001358          832 ------TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNI  900 (1092)
Q Consensus       832 ------~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~  900 (1092)
                            ....++.+.+|..+|.+++.+| +++++|+++...     .|++|+..+...+..+.+|+-.|+.|+|||||++
T Consensus       508 qLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~  586 (764)
T KOG1063|consen  508 QLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRY  586 (764)
T ss_pred             HHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcE
Confidence                  1223456789999999999999 899999988654     7999999999989999999999999999999999


Q ss_pred             EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCc--eeeee-eccC
Q 001358          901 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPI  976 (1092)
Q Consensus       901 l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~--~~~~~-~~~~  976 (1092)
                      |+++|+|+++.+|.......... .....+.|..   -|.++.|+||+.++|+ +.|.+|++|.....  +.+.. -...
T Consensus       587 LLsvsRDRt~sl~~~~~~~~~e~-~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~  662 (764)
T KOG1063|consen  587 LLSVSRDRTVSLYEVQEDIKDEF-RFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK  662 (764)
T ss_pred             EEEeecCceEEeeeeecccchhh-hhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence            99999999999999866432222 2233344443   5899999999999999 68999999999877  55544 2345


Q ss_pred             CCcCEEEEEEec-----CCCEEEEEeCCCcEEEEECCCCce---EEeecccc-ccCCCCccCcccceEEEECCC------
Q 001358          977 SSVPISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEV---QCRILSTA-YLRPTTSCLHVYPHAIAAHPL------ 1041 (1092)
Q Consensus       977 h~~~v~~l~fs~-----dg~~l~t~s~Dg~i~vwd~~~~~~---~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~------ 1041 (1092)
                      ++..|+.++|.|     .+..+++|-..|.|.+|....-..   ...+.... --+...|.+.|.  .+.|.|.      
T Consensus       663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~  740 (764)
T KOG1063|consen  663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWV  740 (764)
T ss_pred             cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEeccccccccc
Confidence            789999999987     223678888999999999661111   11111111 111122344455  4566653      


Q ss_pred             ---CCCEEEEEeCCCcEEEEecC
Q 001358         1042 ---KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1042 ---~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                         ....|++|++|..++++++.
T Consensus       741 ~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  741 EDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cccceeEEeeecccceeEEeecc
Confidence               22357999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=4.5e-39  Score=341.09  Aligned_cols=623  Identities=13%  Similarity=0.117  Sum_probs=417.4

Q ss_pred             eeEecccCCCCceEEeecCCCc--eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~--~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+|.||..+|+|+.|-|+.+  -++++|+.|+.|++|.++.........                 +.+|...+  ++
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~--~c  106 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKEC--VC  106 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeE--EE
Confidence            4578999999999999998876  147899999999999998444333222                 44555444  44


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYS  480 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~  480 (1092)
                      ++.......+...|+++.+||.+..+... ....+.....--.|+++.++.+.++++.|+.+..|.++.-.++  +.+..
T Consensus       107 v~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e  186 (764)
T KOG1063|consen  107 VVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE  186 (764)
T ss_pred             EEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence            44333333334789999999996544111 1111222222345777788666667888888888988875544  45678


Q ss_pred             EecCCcceEEEeecccCC-ccEEEEEecCCeEEEEEcCCCC-----------------ce--------------EEecCC
Q 001358          481 FEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------AR--------------VDYDAP  528 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-----------------~~--------------~~~~~~  528 (1092)
                      +.||.+.|.+++|..... .-+|+++|.|..||+|.+....                 ..              ..+.+|
T Consensus       187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH  266 (764)
T KOG1063|consen  187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH  266 (764)
T ss_pred             eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence            899999999999976544 5689999999999999764322                 00              012478


Q ss_pred             CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeecccc--CCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQ--HNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~s~dg~i~i  604 (1092)
                      ...|.++.|+|.+..|++++.    |.++.+|.+.+.  --+....--...  ........|+|+++.+++-+..|..++
T Consensus       267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl  342 (764)
T KOG1063|consen  267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL  342 (764)
T ss_pred             ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence            889999999999998998876    666999987654  333332211111  245888999999999999999999999


Q ss_pred             EECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC----CeeeecccccccceeeeecCCcccc
Q 001358          605 WDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVT  679 (1092)
Q Consensus       605 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~  679 (1092)
                      |... ........-..++...|..++|+|.|.+|++.+.|.+-|+|..-..    ..+...+.|...++|+++-+     
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-----  417 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-----  417 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-----
Confidence            9833 3344444445567788999999999999999999999999865521    23445556777777777752     


Q ss_pred             cccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc------CCccccccEEEEEEecCCcEEEEee
Q 001358          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL------PSKVKANKISRLTYNNGGQAIFALA  753 (1092)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~------~~~~~~~~i~~l~~s~~g~~l~~~~  753 (1092)
                                       ....+++|..+..+|+|+....-...+..+.-      ........|..+-.|.+.-..= -.
T Consensus       418 -----------------~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~-e~  479 (764)
T KOG1063|consen  418 -----------------EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG-ET  479 (764)
T ss_pred             -----------------CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc-cc
Confidence                             24456777788888998854221110000000      0001122233333333221100 00


Q ss_pred             cCCee-EEeeecCCccccCcccccccCCccccCCCCCceeeecC-----CCCCCCCCeeEEEEecCCCEEEEEeC-----
Q 001358          754 SNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT-----TDSNSQEAVPCFALSKNDAYLFSASG-----  822 (1092)
Q Consensus       754 ~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~v~~~~~s~dg~~l~~~sd-----  822 (1092)
                      .+|.. ..|. +        ...+.....+..+.....+....+     +..+|...|.+++.+|+|+++|++..     
T Consensus       480 ~~G~~~~~~~-e--------t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e  550 (764)
T KOG1063|consen  480 NTGGEAAVCA-E--------TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE  550 (764)
T ss_pred             ccccccceee-e--------cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence            11110 0000 0        000011111112222222222111     12369999999999999999999961     


Q ss_pred             -CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eeEeeccccCCeEEEEEcCC
Q 001358          823 -GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDA  897 (1092)
Q Consensus       823 -g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spd  897 (1092)
                       ..|++|+..+...++.+.+|.-.|+.++||| |+++|++.+.|.++.+|......    .....+.|+.-|+++.|+||
T Consensus       551 hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  551 HAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD  629 (764)
T ss_pred             ceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc
Confidence             3499999999999999999999999999999 99999999999999999986532    13446789999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC-----CEEEEE-eCCcEEEEEcCC-----
Q 001358          898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----TRFLLV-HETHLAIYEAEE-----  966 (1092)
Q Consensus       898 g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-----~~la~~-~d~~v~lwd~~~-----  966 (1092)
                      ++++||+|+|++|++|........   .+... .....+..|+.+++.|-.     ..+++| ..|.|.+|....     
T Consensus       630 e~~FaTaSRDK~VkVW~~~~~~d~---~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~  705 (764)
T KOG1063|consen  630 EKYFATASRDKKVKVWEEPDLRDK---YISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQV  705 (764)
T ss_pred             cceeEEecCCceEEEEeccCchhh---hhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccc
Confidence            999999999999999999875311   11111 112223478999987632     245566 568999998541     


Q ss_pred             --cee----eeeeccCCCcCEEEEEEecC----------CCEEEEEeCCCcEEEEECC
Q 001358          967 --LTC----LKQWFPISSVPISQATFSCD----------CRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       967 --~~~----~~~~~~~h~~~v~~l~fs~d----------g~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                        +..    ...-..+|...|..++|+|-          ...|++|+.|.+++++++.
T Consensus       706 ~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  706 TVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence              110    01112346889999999974          2357999999999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-41  Score=338.76  Aligned_cols=284  Identities=19%  Similarity=0.250  Sum_probs=266.7

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC--C
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G  408 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd--g  408 (1092)
                      .|.+.+|..+.||+|++ +||||+.+|.++||+..+...+.+                   +.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence            36677999999999998 799999999999999999977665                   8899999999999996  6


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ..+|+|+.||++++|++.+...+.   .+.+|...|..++|+|+|+  +|+|++.|.+-++||+.++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999977666   7889999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      .+++|.+  ||.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.    |++++|||++....+
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL  380 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence            9999954  7789999999999999999999999999999999999999999999999986    778999999999999


Q ss_pred             EEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      .++.+|.   +-|..+.|+| .|.+|++++.|++++||...+..+++.+.+|..  .|.++..++|+..+++++.|.+++
T Consensus       381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence            9999998   9999999998 688899999999999999999999999997755  599999999999999999999999


Q ss_pred             EEE
Q 001358          648 ILE  650 (1092)
Q Consensus       648 iw~  650 (1092)
                      +|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2e-39  Score=328.74  Aligned_cols=345  Identities=19%  Similarity=0.268  Sum_probs=288.7

Q ss_pred             CCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCC--CCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +|......+. |+.+|.+++|+|-..-++|+|+.|-+.++|++..  +.......+     ..|...--.  -...+..|
T Consensus       167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV  238 (524)
T KOG0273|consen  167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV  238 (524)
T ss_pred             ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence            5666667777 9999999999998765899999999999999975  111110000     001100000  01134689


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      ++++|+.+|..||+|+.||.++||+...+. +.   ++..|.++|.++.|+.+|.  +|++++.|+++.+||..+|...+
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence            999999999999999999999999988743 22   6888999999999999999  89999999999999999999999


Q ss_pred             EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+.-|..+-..+.|-.   ...+++.+.||.|+|+.+....+..++.+|.++|.++.|.|.|.+|++++.    |+++++
T Consensus       313 ~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki  385 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI  385 (524)
T ss_pred             eeeeccCCccceEEec---CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence            9999998866667642   247999999999999999999999999999999999999999999999986    778999


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      |+.........+..|.   ..|+.+.|+|.+         ..+++++.|++|++||+..+.++..+..|  ..+|.+++|
T Consensus       386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf  460 (524)
T KOG0273|consen  386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF  460 (524)
T ss_pred             eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence            9999999999999988   899999999974         46889999999999999999999998755  457999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +|+|+++|+|+.||.|.+|+.++++.++...                                                 
T Consensus       461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------------------------------------------------  491 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------------------------------------------------  491 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence            9999999999999999999999987776554                                                 


Q ss_pred             ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                                            ..+.|..+.|+.+|..+.++.+||.+++-++
T Consensus       492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                                  2334677888888888888888888887664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-36  Score=329.39  Aligned_cols=580  Identities=16%  Similarity=0.175  Sum_probs=419.9

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      ..+..-|..++++.+.+++..+||++.-..+..                   -..+...|+|++=..+  +..+++.. .
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~g~-~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVASGN-K   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEecCc-E
Confidence            455555556788888999999999988766653                   2357788998887654  44444333 3


Q ss_pred             EEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-cee----EEEecCCcceEEEeec
Q 001358          420 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       420 i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~----~~~~~~~~~v~~i~~~  494 (1092)
                      |.+|..  |+.+.  ..+.+|.+.|.-+.  +-|.  .++++..++.+.||+..++ ..+    .-++...+.|+++. +
T Consensus        97 i~~~~r--gk~i~--~~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYAR--GKHIR--HTTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEEc--cceEE--EEeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            666654  33222  24567777777665  3456  6889999999999998874 221    12222333377764 4


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      |+.--..++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|..    +|.|.+++++.++.+.+|+..
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence            4433457899999999999999999999999999999999999998888888876    677999999999999999976


Q ss_pred             cccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          575 QLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      .   +.|++++|..||+.+++ |+..|.+-+||++..+.+..+... +...+....|-|....+++++.|+++++|-.++
T Consensus       244 ~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~  319 (910)
T KOG1539|consen  244 W---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS  319 (910)
T ss_pred             c---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence            6   89999999999976655 667799999999998888776522 234688899999999999999999999886553


Q ss_pred             C----CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccC
Q 001358          654 S----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP  729 (1092)
Q Consensus       654 ~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~  729 (1092)
                      +    +.++.-.||.                                                                 
T Consensus       320 ~dg~pR~LR~R~GHs-----------------------------------------------------------------  334 (910)
T KOG1539|consen  320 GDGVPRLLRSRGGHS-----------------------------------------------------------------  334 (910)
T ss_pred             CCCcchheeeccCCC-----------------------------------------------------------------
Confidence            3    3333333444                                                                 


Q ss_pred             CccccccEEEEEEe-cCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358          730 SKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  808 (1092)
Q Consensus       730 ~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~  808 (1092)
                           .+..++.|. .+|..+.+++.|++++.+++-...+...-..       ..+...++...... +..-.-.+|..+
T Consensus       335 -----~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~-~~~~k~p~i~~f  401 (910)
T KOG1539|consen  335 -----APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFS-TEKLKLPPIVEF  401 (910)
T ss_pred             -----CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccc-hhhhcCCcceee
Confidence                 444444444 4455555555555555554433222111000       00011100000000 000022345555


Q ss_pred             EEecC-----CCEEEEE-eCCeEEEEEcCCcee-eEEec-----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358          809 ALSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       809 ~~s~d-----g~~l~~~-sdg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      ++...     .+.++.. ++...+.|++..... ...+.     .....+++++.++ .|++.+.|+..|.|.+|++++|
T Consensus       402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSG  480 (910)
T KOG1539|consen  402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSG  480 (910)
T ss_pred             ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccC
Confidence            55432     1233332 257799999876544 22332     2346889999999 9999999999999999999999


Q ss_pred             eeeEee---ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358          877 EVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       877 ~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      -....+   ..|.++|++++...-++.+++++.+|.+++||++....     +....    .+..+..+..+.....+|+
T Consensus       481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-----~~~l~----l~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-----KKSLR----LGSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce-----eeeec----cCCCcceeeeeehhhhhhh
Confidence            998888   58999999999988889999999999999999998542     22221    1235788888888888888


Q ss_pred             -EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCccc
Q 001358          954 -VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus       954 -~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
                       ..|-.|.++|+.+.+.++. +.+|+..|+.++|||||++|++++.|++|++||+.++.++..+...           ..
T Consensus       552 ~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~  619 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SP  619 (910)
T ss_pred             hcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------Cc
Confidence             5677899999999988887 6789999999999999999999999999999999999999777611           12


Q ss_pred             ceEEEECCCCCCEEEEEeCC-CcEEEEe
Q 001358         1033 PHAIAAHPLKPTQFAVGLTN-GEVYVIE 1059 (1092)
Q Consensus      1033 ~~~~~~~p~~~~~l~~~~~d-g~v~~w~ 1059 (1092)
                      +..+.|+| .+++|||+..| ..|++|-
T Consensus       620 ~~sls~SP-ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  620 CTSLSFSP-NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             ceeeEECC-CCCEEEEEEecCceEEEEE
Confidence            35789999 58999999999 6899997

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-39  Score=306.75  Aligned_cols=298  Identities=20%  Similarity=0.284  Sum_probs=255.9

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      +.-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......-            .+  ...+.||+..|..++.+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~~--~r~~~GHsH~v~dv~~s   72 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------VP--VRRLTGHSHFVSDVVLS   72 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------ce--eeeeeccceEecceEEc
Confidence            45789999999999999999877999999999999999876533221            11  12288999999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-
Q 001358          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-  484 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-  484 (1092)
                      +||++.++++.|+++++||+.+|+..+   .|.+|...|.+++|++|++  .+++|+.|.+|++|++. |.+..++..+ 
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~  146 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS  146 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence            999999999999999999999996554   6889999999999999999  69999999999999955 4455555444 


Q ss_pred             -CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 -~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                       .+.|.+++|+|+++..+|++++.|+++++||+++.+....+.+|.+.++.+++||||...++|+.    ++.+.+||++
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~  222 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN  222 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence             78999999999988899999999999999999999999999999999999999999999999875    6679999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-------CCCCceEEEccCCCE
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL  636 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~  636 (1092)
                      .++.+..+...    ..|.+++|+|+...|+.+ .+..|+|||++++..+..+.....       .+...+++|++||..
T Consensus       223 ~~k~lysl~a~----~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t  297 (315)
T KOG0279|consen  223 EGKNLYSLEAF----DIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT  297 (315)
T ss_pred             CCceeEeccCC----CeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence            99998887764    589999999986555554 445699999999998877754422       233567899999999


Q ss_pred             EEEEeCCCeEEEEECC
Q 001358          637 LAVIANENRIKILETP  652 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~  652 (1092)
                      |++|..|+.|++|.+.
T Consensus       298 Lf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  298 LFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEeeecCCcEEEEEee
Confidence            9999999999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.7e-39  Score=304.78  Aligned_cols=295  Identities=17%  Similarity=0.250  Sum_probs=268.6

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...++|+||.+.|.++.|++|.+ .++++|.||.+.|||.-|....+.                   ++-....|..+||
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~  105 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY  105 (343)
T ss_pred             eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence            34489999999999999999998 689999999999999999887764                   3346789999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCC--C-CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~--~-~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +|.|+++|+|+-|+...||++.+.  + ..+...++.+|++.+.|+.|.+|+.   |+|++.|.+..+||+++|+.+..|
T Consensus       106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f  182 (343)
T KOG0286|consen  106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF  182 (343)
T ss_pred             CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence            999999999999999999999865  2 2344457899999999999999886   999999999999999999999999


Q ss_pred             ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      .||.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|..+++|+.    +++.++||
T Consensus       183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD  257 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD  257 (343)
T ss_pred             cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence            999999999999875 7789999999999999999999999999999999999999999999999986    77799999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      ++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|..  .|.++..+|||.-+++|+
T Consensus       258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence            99999998888543 456899999999999999999999999999999999999987754  699999999999999999


Q ss_pred             CCCeEEEEE
Q 001358          642 NENRIKILE  650 (1092)
Q Consensus       642 ~dg~i~iw~  650 (1092)
                      .|..++||.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-40  Score=332.38  Aligned_cols=285  Identities=17%  Similarity=0.258  Sum_probs=265.9

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      |.+.+|..+.||+|++.||+||.+|.+++|+..+...+.   ++.+|...|.++.|+|......++||+.||++++|++.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            456789999999999999999999999999999875444   89999999999999998422379999999999999999


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      +..++..+.+|...|..++|+|  +|++|+|++.|.+-++||+.++.......+|...|.+++|.+||..+++|+.    
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl----  323 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL----  323 (459)
T ss_pred             CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence            9999999999999999999966  6789999999999999999999999999999999999999999999999987    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-  632 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-  632 (1092)
                      |..-++||+++|.++..+.+|.   .+|.++.|+|+|..+++||.|++++|||++..+.+.++..|..  .|..|.|+| 
T Consensus       324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~  398 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ  398 (459)
T ss_pred             cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence            6678999999999999999988   9999999999999999999999999999999999999887754  699999998 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                      .|.+|++++.|++++||...+..++..+.||.+.|.++.++                      +|+..+++++.|.++++
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL  456 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence            78999999999999999999999999999999999999996                      78999999999999999


Q ss_pred             ec
Q 001358          713 EK  714 (1092)
Q Consensus       713 w~  714 (1092)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            95

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.8e-38  Score=327.94  Aligned_cols=479  Identities=17%  Similarity=0.274  Sum_probs=360.1

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +.+..|++.|-+|.|+|...+ +.++-..|.|.|||.++..+++.+++                   ...+|.+..|-+-
T Consensus         7 rk~~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfiaR   66 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIAR   66 (794)
T ss_pred             hHhhccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeeec
Confidence            456678999999999999985 56667789999999999998876332                   5678999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA  486 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~  486 (1092)
                      -+++++|++|..|+||+.++++.+.   .+.+|.+.|.+++.+|...  +++|+|.|-+|++||++.+ .+.++|.||..
T Consensus        67 knWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   67 KNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEH  141 (794)
T ss_pred             cceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence            9999999999999999999997665   7899999999999999988  8999999999999999876 77899999999


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCC--CEEEEEecCCCCceeEEEEeCCC
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      .|.+++|+|. |...+++++-|++|++|.+....+..++.+|...|.++.+-+-|  .+|++++.    +..+.+||.++
T Consensus       142 yVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQt  216 (794)
T KOG0276|consen  142 YVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQT  216 (794)
T ss_pred             EEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecch
Confidence            9999999987 55799999999999999999999999999999999999998755  58999875    77899999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ..+++++.||.   ..|..++|+|.-..+++|++||+++||+..+.++..++...  ...+.+++-.+.++.+++|.++|
T Consensus       217 k~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg  291 (794)
T KOG0276|consen  217 KSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEG  291 (794)
T ss_pred             HHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCC
Confidence            99999999999   89999999999999999999999999999998888887654  34689999999888899999888


Q ss_pred             eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1092)
                      .+.+ .+....+...+.                                  +.|+.           +|...        
T Consensus       292 ~i~v-~lgreeP~vsMd----------------------------------~~gKI-----------iwa~~--------  317 (794)
T KOG0276|consen  292 SVTV-KLGREEPAVSMD----------------------------------SNGKI-----------IWAVH--------  317 (794)
T ss_pred             cEEE-EccCCCCceeec----------------------------------CCccE-----------EEEcC--------
Confidence            7755 222221111111                                  11111           12110        


Q ss_pred             ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCce--eeecCCCCCCC
Q 001358          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSNSQ  802 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~  802 (1092)
                                +.|..+-.-       +.+..+                           ++..|+.+  ...++.  .-.
T Consensus       318 ----------~ei~~~~~k-------s~~~~~---------------------------ev~DgErL~LsvKeLg--s~e  351 (794)
T KOG0276|consen  318 ----------SEIQAVNLK-------SVGAQK---------------------------EVTDGERLPLSVKELG--SVE  351 (794)
T ss_pred             ----------ceeeeeece-------eccCcc---------------------------cccCCccccchhhhcc--ccc
Confidence                      111111100       000000                           01111100  000010  011


Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      -....++-+|+|+++++++||.-.||..-..+.     ...+......|++ |....|+-..++.|+++  ++.+....+
T Consensus       352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi  423 (794)
T KOG0276|consen  352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI  423 (794)
T ss_pred             cchHHhccCCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence            123457889999999999999999987543322     2445667889999 76777888888999998  666666665


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEE
Q 001358          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY  962 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lw  962 (1092)
                      ...-.    +..--.|.+|...+ ++.+++||.++++.     ++..+-.      ...+.|+.+|.+++++.|...+++
T Consensus       424 ~~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~l-----VrrI~v~------~k~v~w~d~g~lVai~~d~Sfyil  487 (794)
T KOG0276|consen  424 RPDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGEL-----VRRIEVT------SKHVYWSDNGELVAIAGDDSFYIL  487 (794)
T ss_pred             ccccc----eeeecCCceEEEEe-CCeEEEEEcccceE-----EEEEeec------cceeEEecCCCEEEEEecCceeEE
Confidence            42111    11112355555555 45599999998663     3333322      347999999999999888886666


Q ss_pred             EcC
Q 001358          963 EAE  965 (1092)
Q Consensus       963 d~~  965 (1092)
                      ...
T Consensus       488 ~~n  490 (794)
T KOG0276|consen  488 KFN  490 (794)
T ss_pred             Eec
Confidence            553

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=321.35  Aligned_cols=547  Identities=13%  Similarity=0.152  Sum_probs=404.8

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ..+.+.|+|++-..+-. ++|.|   ..|.+|.  .|+.+.                  .+..+|...|.-+..  =|.+
T Consensus        73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~------------------~~~~~~~a~v~~l~~--fGe~  126 (910)
T KOG1539|consen   73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIR------------------HTTLLHGAKVHLLLP--FGEH  126 (910)
T ss_pred             CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEE------------------EEeccccceEEEEee--ecce
Confidence            46778999999887764 44544   4566665  343332                  125567777776653  4889


Q ss_pred             EEEEeCCCEEEEEEccCC-CCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~-~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ++++..++.+.||+..++ +......++. ...+.|+++. +|..-.-.++.|+.+|.+++|++++++.+++++++...|
T Consensus       127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I  205 (910)
T KOG1539|consen  127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI  205 (910)
T ss_pred             EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence            999999999999999884 2211111222 2222377664 554321148889999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      +++.-+|.-  ..++.|..+|+|.++++...+.+..+....+.|++++|..||..+.+.+.   ..|.+.+||++..+.+
T Consensus       206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI  280 (910)
T ss_pred             eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence            999775544  58999999999999999999999999988899999999999998776653   2567999999998888


Q ss_pred             EEEe-eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cc--eEEEEeCCCCCCCCceEEEc-cCCCEEEEEeC
Q 001358          569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ--LLTTIDAGGGLPENPRICFN-KNGTLLAVIAN  642 (1092)
Q Consensus       569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~--~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~  642 (1092)
                      .... .|.   +.+....|.|....+++++.|+.+++|=.++  |.  .++...  +|..+..++.|. .+|..+.+++.
T Consensus       281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~  355 (910)
T KOG1539|consen  281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ  355 (910)
T ss_pred             eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence            7776 444   8899999999999999999999999885553  42  233333  445567889887 68999999999


Q ss_pred             CCeEEEEECCCCCeeeeccc------------------ccccceeeeecCCcccccccccCCceeecCCCCCCcccceee
Q 001358          643 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  704 (1092)
Q Consensus       643 dg~i~iw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  704 (1092)
                      |++++.+++.....-+.+..                  .-.+|..+++.....                 ....+.+...
T Consensus       356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE-----------------~~W~Nv~~~h  418 (910)
T KOG1539|consen  356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE-----------------KEWDNVITAH  418 (910)
T ss_pred             CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh-----------------hhhcceeEEe
Confidence            99999988763311111110                  001111121110000                 1223444444


Q ss_pred             ccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCcccc
Q 001358          705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  784 (1092)
Q Consensus       705 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~  784 (1092)
                      -.+...+.|++.....++...-.-+.......+.+++.++-|++.+.|.+.|.|.+|+++.+-.                
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------  482 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH----------------  482 (910)
T ss_pred             cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee----------------
Confidence            5556788899876555433322222223456789999999999999999999999999876521                


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001358          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1092)
Q Consensus       785 ~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1092)
                            ...+- ..+.|..+|+.++...-++.+++++ +|.+.+||..+...+..+. -...++++..+. ...++|.+.
T Consensus       483 ------r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~  553 (910)
T KOG1539|consen  483 ------RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIAL  553 (910)
T ss_pred             ------ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhc
Confidence                  11110 1124899999999998888888887 8999999999888777765 446778888888 778999999


Q ss_pred             CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                      .|-.|+++|..+.+.++.|.||++.|++++|||||++|++++.|++|++||+.++.......+.         .+..++.
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls  624 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLS  624 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeE
Confidence            9999999999999999999999999999999999999999999999999999997654432222         2578999


Q ss_pred             EecCCCEEEEEe-C-CcEEEEEcC
Q 001358          944 FHKDQTRFLLVH-E-THLAIYEAE  965 (1092)
Q Consensus       944 ~s~dg~~la~~~-d-~~v~lwd~~  965 (1092)
                      |||+|.+||+.. | ..|++|.-.
T Consensus       625 ~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  625 FSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ECCCCCEEEEEEecCceEEEEEch
Confidence            999999999953 3 569999743

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=6.2e-37  Score=292.19  Aligned_cols=287  Identities=15%  Similarity=0.179  Sum_probs=265.3

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      +|+||.+.|.++.|++|+++|++++.||.+.|||.-+.....   .++-....|..++|+|.|+  ++++|+.|+...||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence            488999999999999999999999999999999998865333   4556778899999999999  89999999999999


Q ss_pred             ECCCC------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCCE
Q 001358          471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR  543 (1092)
Q Consensus       471 d~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~  543 (1092)
                      ++.+.      +..+.+.+|.+.+.++.|..  | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++.
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            99865      34577899999999999854  3 5799999999999999999999999999999999999999 9999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      +++++-    +...++||++.+.++++|.+|+   ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus       202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~  274 (343)
T KOG0286|consen  202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC  274 (343)
T ss_pred             EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence            999987    6669999999999999999999   999999999999999999999999999999999999998877778


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      +|++++||..|++|.+|..|..+.+||.-.++.+..+.+|.+.|.++..+                      |||..+++
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T  332 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT  332 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence            89999999999999999999999999999999999999999999999996                      77888999


Q ss_pred             eccccccceec
Q 001358          704 VEAENKSEVEK  714 (1092)
Q Consensus       704 ~~~d~~i~~w~  714 (1092)
                      |+.|.++|||.
T Consensus       333 gSWDs~lriW~  343 (343)
T KOG0286|consen  333 GSWDSTLRIWA  343 (343)
T ss_pred             cchhHheeecC
Confidence            99999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1e-36  Score=283.66  Aligned_cols=293  Identities=17%  Similarity=0.273  Sum_probs=251.3

Q ss_pred             ceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001358          347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  426 (1092)
Q Consensus       347 ~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~  426 (1092)
                      .-+|++++.|.+|++|...+|.+.++                   +....+.|+.+...||+++||+++... |++||+.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~   69 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLN   69 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEcc
Confidence            35899999999999999999999876                   334567899999999999999997665 9999999


Q ss_pred             CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe
Q 001358          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS  506 (1092)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~  506 (1092)
                      ++..- +..++.+|...|+++.|..||+  ++++||.||+++|||++...+.+.++ |..+|+++.++|  +..-|++|.
T Consensus        70 S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~d  143 (311)
T KOG0315|consen   70 SNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISGD  143 (311)
T ss_pred             CCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEeec
Confidence            98754 5668999999999999999999  89999999999999999977777775 779999999966  556899999


Q ss_pred             cCCeEEEEEcCCCCceEEec-CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe------EEEEEeeccccCC
Q 001358          507 VDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQHN  579 (1092)
Q Consensus       507 ~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~~  579 (1092)
                      .+|.|++||+........+. .....|.+++..|||.+++.+..    .+..++|++-++.      .+..++.|.   +
T Consensus       144 qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---~  216 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---G  216 (311)
T ss_pred             CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---c
Confidence            99999999999876655443 34568999999999999998865    6679999987653      344566666   8


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeee
Q 001358          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA  659 (1092)
Q Consensus       580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~  659 (1092)
                      .+..+.++|++++|+++|.|.+++||+.++. ....+...++...+..++||.||++|++++.|+..++|++..++.+..
T Consensus       217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q  295 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ  295 (311)
T ss_pred             eEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence            8999999999999999999999999999988 333333344456799999999999999999999999999999999999


Q ss_pred             cccccccceeeeec
Q 001358          660 AGVLSDNLRKLSVN  673 (1092)
Q Consensus       660 ~~~~~~~v~~~~~~  673 (1092)
                      ..+|.....|++..
T Consensus       296 y~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  296 YQGHHKAAVCVALN  309 (311)
T ss_pred             cCCcccccEEEEee
Confidence            99998887777654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.3e-36  Score=329.74  Aligned_cols=277  Identities=18%  Similarity=0.263  Sum_probs=242.0

Q ss_pred             ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCcee--------eeeeeeeec----ccccce
Q 001358          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVWDI----GACSML  386 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~--------~~~~~~~d~----~~~~~~  386 (1092)
                      ...+|.-|..++..-...++|..||+|++ +||.|-.|..|++|.+...+...        ......-|+    ..-...
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            56678888888887777999999999998 89999999999999998543211        000000011    111122


Q ss_pred             eEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358          387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  466 (1092)
Q Consensus       387 ~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  466 (1092)
                      .....+.||+++|..+.|+||.++|+++|.|++|++|.+.+..++-   ..+||..+|+++.|+|-|-  +++|+|.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            2334589999999999999999999999999999999999976554   6789999999999999998  8999999999


Q ss_pred             EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                      .++|..+...+++.+.+|-..|.|+.|+|  +..++++||.|.++|+||..++..+..+.+|.++|.+++|||+|++|++
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            99999999999999999999999999976  5579999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      ++.    ++.|.+||+.+++.+..+.+|.   +.|.++.|+.+|..|++|+.|.+|++||+..-
T Consensus       595 g~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  595 GDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            976    7779999999999999999997   99999999999999999999999999998753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-35  Score=282.05  Aligned_cols=296  Identities=17%  Similarity=0.185  Sum_probs=249.4

Q ss_pred             ccccccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001358          731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  809 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~  809 (1092)
                      .+|.+.|..++..+. ...++.++.|..+.+|++...                 |...|.....  +.  +|...|..++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~   70 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV   70 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence            459999999999887 556778888999999998764                 2334443333  33  4999999999


Q ss_pred             EecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc-ccC
Q 001358          810 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSK  887 (1092)
Q Consensus       810 ~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~  887 (1092)
                      .++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|++|++|+............ |++
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~  149 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE  149 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence            999999999998 89999999999999999999999999999999 899999999999999999985544433333 378


Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEc
Q 001358          888 RVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA  964 (1092)
Q Consensus       888 ~V~~l~~spd--g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~  964 (1092)
                      -|.|+.|+|+  ..+++++|.|++|++||+.+     .+..+.+.+|..   .++.+++||||.+.++ +.||.+.+||+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL  221 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL  221 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence            9999999998  78999999999999999998     446666777665   8999999999999999 68999999999


Q ss_pred             CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001358          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
                      +.++.+..  .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+-..-+ ....+.+.+++++|++ ||.
T Consensus       222 ~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG~  296 (315)
T KOG0279|consen  222 NEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DGQ  296 (315)
T ss_pred             cCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CCc
Confidence            99999765  3578999999999998666655 56679999999999988877444333 2235567778999998 699


Q ss_pred             EEEEEeCCCcEEEEecC
Q 001358         1045 QFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1045 ~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .|++|..|+.|++|.+.
T Consensus       297 tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  297 TLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEeeecCCcEEEEEee
Confidence            99999999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-34  Score=301.69  Aligned_cols=465  Identities=15%  Similarity=0.206  Sum_probs=344.6

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|+..|.++.|+|....++++-.+|.|.|||.++...++   .+.-..-+|.++.|-+--+  ++++|+.|..|+||+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            34488999999999999999999999999999999987776   5666778999999998877  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEec-CCCEEEEEec
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1092)
                      ..+++.++.|..|.+.|.+++.+|..  .+++++|.|-+|++||++.. .+..++.+|.+-|..++|.| |.+.+++++-
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999999999999998754  79999999999999999875 45779999999999999999 5568888887


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                          +++|.+|.+.+..+..++.+|.   ..|+++.+-+-  ..++++|++|.+++|||..+..+++++.+|.+  .|..
T Consensus       162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~  232 (794)
T KOG0276|consen  162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF  232 (794)
T ss_pred             ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence                6679999999999999999999   89999999764  47999999999999999999999999997755  6999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|.-..+++|+.||+++||+..+-+....+.-.-+                                          
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gle------------------------------------------  270 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLE------------------------------------------  270 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCc------------------------------------------
Confidence            99999999999999999999999887655444443333                                          


Q ss_pred             cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1092)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1092)
                                                  ++.+++..+.+..++.|..+|.+.+=                          
T Consensus       271 ----------------------------RvW~I~~~k~~~~i~vG~Deg~i~v~--------------------------  296 (794)
T KOG0276|consen  271 ----------------------------RVWCIAAHKGDGKIAVGFDEGSVTVK--------------------------  296 (794)
T ss_pred             ----------------------------eEEEEeecCCCCeEEEeccCCcEEEE--------------------------
Confidence                                        34444444444445555555544430                          


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC--CeEEEE------EcCCceeeE----EecCCCCCeEEEEEcCCC
Q 001358          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHD  855 (1092)
Q Consensus       788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd--g~i~iw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d  855 (1092)
                                   -......+.+++.|+.+-+...  -.+.+-      ++..|+.+.    .+....-....++-+| +
T Consensus       297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N  362 (794)
T KOG0276|consen  297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N  362 (794)
T ss_pred             -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence                         0111122333444433332211  011111      223333221    1111111235678899 8


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      |+++++++ ||.-.||..-..+     ..+.+.-....|++|.+..|.--.++.|+++  +..+.     .+....    
T Consensus       363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke-----~ksi~~----  425 (794)
T KOG0276|consen  363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKE-----HKSIRP----  425 (794)
T ss_pred             CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--eccee-----cccccc----
Confidence            98877655 8888888642211     1244556778999998888888888889988  33221     111111    


Q ss_pred             CCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                         -..+.+--.|.+|.+..++.+++||..+++.++.+-.    ....+.|+.+|.+++.++.| +.++...
T Consensus       426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~-Sfyil~~  489 (794)
T KOG0276|consen  426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDD-SFYILKF  489 (794)
T ss_pred             ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecC-ceeEEEe
Confidence               1113333456777778899999999999999987432    35678999999988888765 4444443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.4e-34  Score=309.36  Aligned_cols=583  Identities=16%  Similarity=0.230  Sum_probs=404.0

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ...+..|-.++|+|... ++.++-..|.|.+||..-+.++..                   +.+|.++|..++|+|++.+
T Consensus         6 EskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qpl   65 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPL   65 (1202)
T ss_pred             hcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCe
Confidence            34466899999999998 577778889999999999998875                   7789999999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEE
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      +++|++|..|+||+..+.+++.   ++.||-+.|..+.|++.-.  +++|+|.|.+|+||++.+++++..+.||...|.|
T Consensus        66 FVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc  140 (1202)
T KOG0292|consen   66 FVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC  140 (1202)
T ss_pred             EEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence            9999999999999999987666   7889999999999999877  8999999999999999999999999999999999


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001358          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      ..|+|+.|  .++|+|-|.+|||||+...+....-.+      ++.-...+..+.           .-++-...--....
T Consensus       141 AqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  141 AQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKHV  201 (1202)
T ss_pred             eccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeeee
Confidence            99988764  899999999999999976544332221      010001111110           00111111223456


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +.||.   ..|+-++|+|.-..+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||
T Consensus       202 LEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD  278 (1202)
T KOG0292|consen  202 LEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD  278 (1202)
T ss_pred             ecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence            78888   899999999999999999999999999987655444444456677899999999999999999999999999


Q ss_pred             CCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCC-----CCCcccceeeccccccceeceeeccCcccee
Q 001358          651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1092)
                      +...+.++.++...+..+.++..|.....+.|-..|-+.|.-+.     .-.++.+...- |..|+.+|+.+........
T Consensus       279 m~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~  357 (1202)
T KOG0292|consen  279 MTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVAS  357 (1202)
T ss_pred             cccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEe
Confidence            99999999999999999999999999999999999888884331     12344444333 7788888887755555555


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEee--cCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001358          726 LLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  803 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  803 (1092)
                      +..+.. ...++.++.++|....++.++  .+|...++.++..........            ..       .    ...
T Consensus       358 lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~------------~~-------~----k~t  413 (1202)
T KOG0292|consen  358 LRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGK------------DV-------K----KGT  413 (1202)
T ss_pred             ccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCch------------hh-------h----cCC
Confidence            543332 235678899999776655553  346777777665421100000            00       0    111


Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      ....+-.+.++-.+..-++..+.+-++.. +..+.+... ..+..+-+.- .|.+|+.  ....|.+||++..+.+..+.
T Consensus       414 G~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~  488 (1202)
T KOG0292|consen  414 GEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK  488 (1202)
T ss_pred             CCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe
Confidence            22223223332222222234444444432 222222211 2333444444 5555543  34579999999888777776


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001358          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd  963 (1092)
                        ...|.-+.||+|..++|--+. .+|.|.+.+-.      .+.......    .|.+-+|..+|-+|.+..+.- + |-
T Consensus       489 --~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEti----riksgawde~gVfiYtT~nHi-k-Ya  553 (1202)
T KOG0292|consen  489 --VSKVKYVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHETI----RIKSGAWDEDGVFIYTTLNHI-K-YA  553 (1202)
T ss_pred             --cCceeEEEEcCccchhhhccc-ceEEEEecchh------heecchhee----EeeeceeccCceEEEEehhhh-h-hh
Confidence              467899999999988887765 45888876641      222222222    477888988888887643211 0 11


Q ss_pred             cCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358          964 AEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       964 ~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                      +.+|.  .+++ +   ..++.-  +--.|..++.-..|+.++..+++.-+
T Consensus       554 l~~GD~GIikT-L---d~~iyi--tkv~gn~V~cl~rd~~~~~~~IDptE  597 (1202)
T KOG0292|consen  554 LENGDSGIIKT-L---DKPIYI--TKVKGNKVFCLNRDGEIECLTIDPTE  597 (1202)
T ss_pred             hccCCcceEEe-c---ccceEE--EEeeCCEEEEEecCCCeEEEeechHH
Confidence            11111  1111 0   112221  22257777777788888888877643

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-36  Score=296.19  Aligned_cols=292  Identities=22%  Similarity=0.337  Sum_probs=268.4

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      +..+.+.||...|+.+-|+|+-. ++++++.|++|++||..+|+....                   +.||...|..++|
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~  158 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF  158 (406)
T ss_pred             CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence            56678899999999999999997 899999999999999999998765                   8899999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +..|++||+++.|-.+++||.++.  .++...+.+|...|.+++|-|.|.  ++++++.|.+|+.|+..+|.++++|.+|
T Consensus       159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence            999999999999988999999863  233346779999999999999998  8999999999999999999999999999


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC---------------CCEEEEEec
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN---------------GRRLFSCGT  549 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d---------------g~~l~~~~~  549 (1092)
                      ...|..+..  ..||.++++++.|.++++|-+.+..+...+..|+.+|.+++|.|.               +.++.+++.
T Consensus       235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr  312 (406)
T KOG0295|consen  235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR  312 (406)
T ss_pred             hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence            999998887  668899999999999999999999999999999999999999773               246666665


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          |++|++||+.+|.++-++.+|.   +.|..++|+|.|++|+++.+|+++++||+.+++++.++..|.+  .++++.
T Consensus       313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD  383 (406)
T KOG0295|consen  313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD  383 (406)
T ss_pred             ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence                7789999999999999999999   9999999999999999999999999999999999999997766  489999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEC
Q 001358          630 FNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      |+.+..++++|+-|.++++|..
T Consensus       384 fh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCceEEeccccceeeeeec
Confidence            9999999999999999999974

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.2e-32  Score=281.45  Aligned_cols=540  Identities=12%  Similarity=0.153  Sum_probs=384.5

Q ss_pred             CCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEE
Q 001358          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~  401 (1092)
                      ++.+...-++|+. -=..+-+-|.|..+...+   +.+.+++++...+..                    +.+|+..|.|
T Consensus        54 l~LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc  109 (626)
T KOG2106|consen   54 LKLEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKC  109 (626)
T ss_pred             ceeEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEE
Confidence            3344555666764 333456778887433333   456777776533222                    7789999999


Q ss_pred             EEECCCCCEEEEEeCCC--------EEEEEEccCCCCccceEEecccccceeEEEeeCCCC--cEEEEEEeCCCcEEEEE
Q 001358          402 VVWSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWD  471 (1092)
Q Consensus       402 l~~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~--~l~l~s~~~d~~i~vwd  471 (1092)
                      ++.+||.-.+|+|-..|        .++|||..+-..   +..+......|.|++||+-..  .+..+--+.+..+.|||
T Consensus       110 ~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T---L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWd  186 (626)
T KOG2106|consen  110 MAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST---LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWD  186 (626)
T ss_pred             EeecCCceeeccCcccccCCCcCCCeeeeccccccee---eeeeccccccceeeeecccCCCceEEEecCCCccccchhh
Confidence            99999999999874333        599999876443   335666677899999998533  22233345667899999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE---ecCC-CCceEEEEEecCCCEEEEE
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAP-GLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~-~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +..+......+.....|....|+|...  -++.....|.+.+|+++.+.....   +..+ ..-|.+++|.++|..+ ++
T Consensus       187 Wqk~~~~~~vk~sne~v~~a~FHPtd~--nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-Tg  263 (626)
T KOG2106|consen  187 WQKKAKLGPVKTSNEVVFLATFHPTDP--NLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TG  263 (626)
T ss_pred             chhhhccCcceeccceEEEEEeccCCC--cEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-ee
Confidence            999998888888888899999988743  344555578999999987765442   2222 2579999999999866 33


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                          +.++.|.+|+..+.+..+....|.   +.|.+++...+|. |++|+.|..|..|| ..-+.++..+.+.....+..
T Consensus       264 ----DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRt  334 (626)
T KOG2106|consen  264 ----DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRT  334 (626)
T ss_pred             ----cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeE
Confidence                447889999998888777776666   9999999999985 55699999999999 55555666655555555665


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++=...+  +++|+..+.|.-=.+.++-.+                                                  
T Consensus       335 v~e~~~d--i~vGTtrN~iL~Gt~~~~f~~--------------------------------------------------  362 (626)
T KOG2106|consen  335 VAEGKGD--ILVGTTRNFILQGTLENGFTL--------------------------------------------------  362 (626)
T ss_pred             EecCCCc--EEEeeccceEEEeeecCCceE--------------------------------------------------
Confidence            5533222  666666555443333322111                                                  


Q ss_pred             cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1092)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1092)
                                           ...+|......++..|+...+++++.|+.+++|+  ..+             .+|... 
T Consensus       363 ---------------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~-  405 (626)
T KOG2106|consen  363 ---------------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI-  405 (626)
T ss_pred             ---------------------EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE-
Confidence                                 0123666777888888888899999999999987  111             112211 


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                                   -..+..|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+
T Consensus       406 -------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~  469 (626)
T KOG2106|consen  406 -------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDN  469 (626)
T ss_pred             -------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCC
Confidence                         35678899999999 888887 69999999999665554444 88999999999 999999999999


Q ss_pred             eEEEEEcCCce-eeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee---------ee---eecCCCC
Q 001358          867 TILIYNARSSE-VISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGV  932 (1092)
Q Consensus       867 ~v~iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~---------~~---~~~~~~~  932 (1092)
                      .|+||.+.... ...+.. .|..+|+.+.||+|+++|.+.+.|-.|-.|.-..-+....         .+   .....+ 
T Consensus       470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~-  548 (626)
T KOG2106|consen  470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG-  548 (626)
T ss_pred             eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc-
Confidence            99999987643 333322 2448999999999999999999999999994332111110         00   011111 


Q ss_pred             cCCCCCceEEEEecCCCEEEEEe-CCcEEEEEcCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          933 MTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       933 ~~~~~~v~~l~~s~dg~~la~~~-d~~v~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                       .....+..++-+...+++|++. .|+|++|...-.+  .....+.+|++-|++++|+.+...+++.+.|.+|..|++
T Consensus       549 -s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  549 -SDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             -cCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence             1123567778888889999975 4899999876332  233346789999999999999999999889999999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=284.15  Aligned_cols=339  Identities=18%  Similarity=0.230  Sum_probs=286.6

Q ss_pred             EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEE
Q 001358          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  515 (1092)
Q Consensus       436 ~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd  515 (1092)
                      ++..|+..|.+++.+|+.+  +++||+.|....+|++.+|..+..+.+|...|+++.|  +.+|.+|++|+.+|.|+||+
T Consensus        59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence            6889999999999999877  8999999999999999999999999999999999999  45789999999999999999


Q ss_pred             cCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE
Q 001358          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  595 (1092)
                      ..++.....+......+.-+.|+|.+..|++|+.    ++.+.+|.+.++...+.+.||.   .++++-.|.|+|+.+++
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT  207 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence            9999999988878888999999999999999876    6669999999988889999988   89999999999999999


Q ss_pred             EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCC
Q 001358          596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       596 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      +..||+|++||..+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+             
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-------------  273 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-------------  273 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence            99999999999999999999875553 3567899999999999999988887766555432211110             


Q ss_pred             cccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC
Q 001358          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  755 (1092)
                                                                                           .+..+..... 
T Consensus       274 ---------------------------------------------------------------------~~~~l~~~~e-  283 (399)
T KOG0296|consen  274 ---------------------------------------------------------------------TVPELKPSQE-  283 (399)
T ss_pred             ---------------------------------------------------------------------CCccccccch-
Confidence                                                                                 0000000000 


Q ss_pred             CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce
Q 001358          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK  834 (1092)
Q Consensus       756 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~  834 (1092)
                                                                  .....|.++.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus       284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                                        0122334445555666778888 8999999998877


Q ss_pred             eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358          835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       835 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      ....+. |...|+.+.|-+  ..+|++++.+|.|+.||.++|+++..+.||..+|.+++++|++++++|+|.|++.+|++
T Consensus       320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            665554 888899999987  56899999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 001358          915 VD  916 (1092)
Q Consensus       915 ~~  916 (1092)
                      +.
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            75

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=5e-35  Score=287.91  Aligned_cols=335  Identities=15%  Similarity=0.190  Sum_probs=290.4

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+.++..|++.|.+++.+|+.+ ++|+|+.|....||+..+|+....                   +.+|+..|+++.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~  113 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS  113 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence            345688999999999999999776 899999999999999999997665                   889999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      ||.||.+||+|+.+|.|+||+..++....   .+......|.-+.|+|-+.  +|+.|+.||.+-+|.+.++...+.+.|
T Consensus       114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence            99999999999999999999999987554   4545667789999999988  899999999999999999888999999


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-CCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      |..++++=.|.|  +|+.++++..||+|++|+..+..+...+... .....++.++..+..++.|..    ++.+++-+.
T Consensus       189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~  262 (399)
T KOG0296|consen  189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN  262 (399)
T ss_pred             CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence            999999999955  6899999999999999999999988877643 345678889999999988865    566888888


Q ss_pred             CCCeEEEEEee--------ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      .+|+.+....+        +......|.++.++..-+..++|+-||+|.|||+....+.......   ..|..+.|-+ .
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t  338 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T  338 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence            88888777663        3322234555666666778899999999999999987777766544   3489999998 8


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceec
Q 001358          635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  714 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~  714 (1092)
                      .+|++++.+|.|+.||.++++......+|...|.+++++                      |+++++++++.|++.++|+
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence            899999999999999999999999999999999999996                      7899999999999999987


Q ss_pred             e
Q 001358          715 P  715 (1092)
Q Consensus       715 ~  715 (1092)
                      .
T Consensus       397 v  397 (399)
T KOG0296|consen  397 V  397 (399)
T ss_pred             c
Confidence            5

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.4e-35  Score=289.99  Aligned_cols=300  Identities=18%  Similarity=0.249  Sum_probs=269.9

Q ss_pred             ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      -+..|-.+.+.+.||-+.|.|+++.|-.+ ++++|+.|++|+|||+.+|+...+                   +.||-..
T Consensus       136 eWHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~  195 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIET  195 (460)
T ss_pred             cccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhhe
Confidence            35566778899999999999999999987 799999999999999999998876                   8899999


Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      |..+++|+--.||.+++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  .|++|+.|.+++|||+++...+
T Consensus       196 vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V  270 (460)
T KOG0285|consen  196 VRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASV  270 (460)
T ss_pred             eeeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceE
Confidence            9999999999999999999999999999998887   6779999999999999988  8999999999999999999999


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      ..+.||..+|.++.+.+.  ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+     .+.
T Consensus       271 ~~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik  343 (460)
T KOG0285|consen  271 HVLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIK  343 (460)
T ss_pred             EEecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cce
Confidence            999999999999988654  3579999999999999999999999999999999999999999999998753     499


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe---CCC---CCCCCceEEEcc
Q 001358          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNK  632 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~  632 (1092)
                      .|++..|..+..+.+|.   ..+++++.+.|+ ++++|+++|.+.+||.++|-..+...   .++   ....|.+.+|..
T Consensus       344 ~w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk  419 (460)
T KOG0285|consen  344 QWKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK  419 (460)
T ss_pred             eccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc
Confidence            99999999999999888   889999998875 88999999999999999986655442   222   224588999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC
Q 001358          633 NGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .|..|++|..|.+|++|.-.+.
T Consensus       420 tg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  420 TGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             cCceEEeccCCcceEEEecccc
Confidence            9999999999999999986643

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4e-34  Score=266.48  Aligned_cols=295  Identities=17%  Similarity=0.255  Sum_probs=252.0

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeecccc
Q 001358          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ  577 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~  577 (1092)
                      -+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++     ...|++||+++++  .+.++.+|.  
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~--   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT--   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence            4899999999999999999999999999999999999999999999987     4459999999875  588999988  


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCee
Q 001358          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                       ..|.++.|..+|+++++||+||+++|||++...+.+.+...   ..|+++..+|+...|+++..+|.|++||+.+....
T Consensus        84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence             89999999999999999999999999999996666666543   56999999999999999999999999999875332


Q ss_pred             eecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccE
Q 001358          658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI  737 (1092)
Q Consensus       658 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i  737 (1092)
                      ..+-                                                                   |.  ....|
T Consensus       160 ~~li-------------------------------------------------------------------Pe--~~~~i  170 (311)
T KOG0315|consen  160 HELI-------------------------------------------------------------------PE--DDTSI  170 (311)
T ss_pred             cccC-------------------------------------------------------------------CC--CCcce
Confidence            2211                                                                   11  33568


Q ss_pred             EEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEE
Q 001358          738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL  817 (1092)
Q Consensus       738 ~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l  817 (1092)
                      .++++.|||..++++...|..++|++......           ...       .....+  +.|...+..+.+|||+++|
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l-------~P~~k~--~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SEL-------EPVHKF--QAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccc-------eEhhhe--ecccceEEEEEECCCCcEE
Confidence            89999999999999999999999998653210           000       000111  2489999999999999999


Q ss_pred             EEEe-CCeEEEEEcCCc-eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001358          818 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1092)
Q Consensus       818 ~~~s-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1092)
                      |+++ |.+++||+.++. +....+.+|...+..++||. |++||++|+.|+.+++|++..++.+....+|..+..|++..
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9997 899999999988 67778899999999999999 99999999999999999999999999999999988888764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=266.92  Aligned_cols=292  Identities=22%  Similarity=0.338  Sum_probs=241.2

Q ss_pred             eeEecccCCCCceEEeecCC-CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spd-g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+.+++|++.|+.+||+|- |. +||+|+.|+.|+||+...+.-...               +..+-.+|+..|.++||
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence            45889999999999999999 86 899999999999999986443221               22234579999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC---ceeEEE
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF  481 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~  481 (1092)
                      +|.|++||++|.|.++.||.-..++ .....++.||...|.|++||++|.  +|++|+.|++|-||.+..+   +++..+
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL  146 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL  146 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence            9999999999999999999988654 455668999999999999999999  8999999999999998754   567888


Q ss_pred             ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC---CCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +.|...|..+.|+|+.  .+|++++.|.+|++|+-..   -.+..++.++...|.+++|++.|..|++++.    +++++
T Consensus       147 ~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~  220 (312)
T KOG0645|consen  147 QEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS  220 (312)
T ss_pred             ccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence            9999999999998876  4999999999999997663   2357788999999999999999999999975    77799


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eEEEEeCCCCCCCCceEEEcc
Q 001358          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +|-..+.     +.+.  +...++.+.|.  ...|++++.|+.|++|.-...-      ++... .+.+...|+++.|+|
T Consensus       221 Iw~~~~~-----~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  221 IWRLYTD-----LSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNP  290 (312)
T ss_pred             eeeeccC-----cchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcC
Confidence            9975422     2221  24788999998  4689999999999999765421      11111 123345799999999


Q ss_pred             C-CCEEEEEeCCCeEEEEECC
Q 001358          633 N-GTLLAVIANENRIKILETP  652 (1092)
Q Consensus       633 ~-~~~l~~~~~dg~i~iw~~~  652 (1092)
                      . .++|+++++||.+++|.+.
T Consensus       291 ~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  291 KVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCceeecCCCceEEEEEec
Confidence            4 7899999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-32  Score=294.86  Aligned_cols=499  Identities=16%  Similarity=0.190  Sum_probs=356.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +...+..|..++|+|...+++++-..|.|++||..-+.++.   .+.+|.++|..++|+|++.  ++||||.|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            34466789999999999999999999999999999998777   6889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .++.+++.++.||.+.|..+.|++.  -.+++|+|.|.+|+||++.+.+++..+++|.+-|.|..|+|....+++++-  
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--  155 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--  155 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence            9999999999999999999999764  469999999999999999999999999999999999999999999999987  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE---EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                        |.+|++||+..-+....-.+.-  ...+       .+...   +-|+.|-          -....+++|  ...|+-+
T Consensus       156 --DQTVRVWDisGLRkk~~~pg~~--e~~~-------~~~~~~~dLfg~~Da----------VVK~VLEGH--DRGVNwa  212 (1202)
T KOG0292|consen  156 --DQTVRVWDISGLRKKNKAPGSL--EDQM-------RGQQGNSDLFGQTDA----------VVKHVLEGH--DRGVNWA  212 (1202)
T ss_pred             --cceEEEEeecchhccCCCCCCc--hhhh-------hccccchhhcCCcCe----------eeeeeeccc--ccccceE
Confidence              5579999986543322111100  0011       11111   1122222          122344444  4579999


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCC--eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecc
Q 001358          629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1092)
                      +|+|.-.++++|++|..|++|.+...+  .+.+.++|.+.|.++.|+                      |...++++.+.
T Consensus       213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE  270 (1202)
T KOG0292|consen  213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE  270 (1202)
T ss_pred             EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence            999999999999999999999988664  456789999999999997                      56788999999


Q ss_pred             ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCC
Q 001358          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  786 (1092)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1092)
                      |+++|+||+......+++.-      ..++...++..|..+.++++... -+.+|.++.                     
T Consensus       271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDs-Gm~VFkleR---------------------  322 (1202)
T KOG0292|consen  271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDS-GMIVFKLER---------------------  322 (1202)
T ss_pred             CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCC-ceEEEEEcc---------------------
Confidence            99999999987666655532      56778899999999965555544 455555432                     


Q ss_pred             CCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEecCC---CCCeEEEEEcCCCCCEEEE
Q 001358          787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI  861 (1092)
Q Consensus       787 ~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las  861 (1092)
                                     +.+  +.++  ++..|....+..|+-+|+.+.+.  +..++..   ..+..++.++|..+..|++
T Consensus       323 ---------------Erp--a~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic  383 (1202)
T KOG0292|consen  323 ---------------ERP--AYAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC  383 (1202)
T ss_pred             ---------------cCc--eEEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence                           222  2233  34445555689999999987543  3344433   3678999999955555555


Q ss_pred             EeCC-CeEEEEEcCCceeeEeec---c-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358          862 GMDD-STILIYNARSSEVISKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       862 g~~d-g~v~iwd~~~~~~~~~l~---~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      ...| |...++.+..... ....   . ......++-.. .+++.+---.+..+.+-++.....+   .+..+.      
T Consensus       384 s~~~n~~y~L~~ipk~~~-~~~~~~~~~k~tG~~a~fva-rNrfavl~k~~~~v~ik~l~N~vtk---kl~~~~------  452 (1202)
T KOG0292|consen  384 SNLDNGEYELVQIPKDSD-GVSDGKDVKKGTGEGALFVA-RNRFAVLDKSNEQVVIKNLKNKVTK---KLLLPE------  452 (1202)
T ss_pred             eccCCCeEEEEEecCccc-ccCCchhhhcCCCCceEEEE-ecceEEEEecCcceEEecccchhhh---cccCcc------
Confidence            4433 4555665543211 0000   0 11122222222 2233332223555666666653211   122221      


Q ss_pred             CCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          937 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                       .+..+-+..+|.+|+. +...|.+||++....+.++.   -..|..++||+|..+++--+. .+|.+.+..
T Consensus       453 -~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~K-h~i~i~~kk  518 (1202)
T KOG0292|consen  453 -STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLSK-HTITIADKK  518 (1202)
T ss_pred             -cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhccc-ceEEEEecc
Confidence             2445666667766554 45679999999888877754   457889999999987776553 466666644

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-33  Score=287.08  Aligned_cols=279  Identities=19%  Similarity=0.300  Sum_probs=252.5

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|++++|+.+|. +||+|+.||.++||+...+ ++.+                   +..|+++|.++.|+.+|.||+++
T Consensus       236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~t-------------------l~~HkgPI~slKWnk~G~yilS~  294 (524)
T KOG0273|consen  236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIST-------------------LGQHKGPIFSLKWNKKGTYILSG  294 (524)
T ss_pred             CCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhhh-------------------hhccCCceEEEEEcCCCCEEEec
Confidence            4899999999998 8999999999999997654 4433                   67799999999999999999999


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~  494 (1092)
                      +.|+++.+||..+|+..+   .+.-|..+-..+.|-.+..   +++++.|+.|+|+.+...+++.++.+|.++|.++.|.
T Consensus       295 ~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  295 GVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             cCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence            999999999999987655   4556888777889987776   9999999999999999999999999999999999995


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCC---------CEEEEEecCCCCceeEEEEeCCCC
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------RRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      +  .+.+|++++.|+++++|..........+..|...|..+.|+|+|         ..+++++.    +++|++||...+
T Consensus       369 ~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~g  442 (524)
T KOG0273|consen  369 P--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESG  442 (524)
T ss_pred             C--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCC
Confidence            5  56899999999999999999888889999999999999999965         45777765    778999999999


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                      .++..|..|.   .+|++++|+|++.++++|+.||.|.+|+..+++..+.....+   .|..++|+.+|..+.++..|+.
T Consensus       443 v~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~sd~~  516 (524)
T KOG0273|consen  443 VPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACASDGS  516 (524)
T ss_pred             ceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEecCCC
Confidence            9999999988   999999999999999999999999999999999999987654   4899999999999999999999


Q ss_pred             EEEEECC
Q 001358          646 IKILETP  652 (1092)
Q Consensus       646 i~iw~~~  652 (1092)
                      +.+.|+.
T Consensus       517 vcvldlr  523 (524)
T KOG0273|consen  517 VCVLDLR  523 (524)
T ss_pred             ceEEEec
Confidence            9998864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=4e-31  Score=270.28  Aligned_cols=524  Identities=13%  Similarity=0.180  Sum_probs=374.7

Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--------cEEEEEC
Q 001358          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA  472 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--------~i~vwd~  472 (1092)
                      .+-+-|.|..+....  +.+.+++++...+.    .+.+|...|.|++.+||.-  .+++|-.-|        .+++||.
T Consensus        70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds  141 (626)
T KOG2106|consen   70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS  141 (626)
T ss_pred             eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence            356778888776543  34566777653211    3669999999999999865  566554333        5999999


Q ss_pred             CCCceeEEEecCCcceEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .+-..++.+......|.+++|++...|.++....  .+..+.+||+..+.........+..+....|+|.+..++.... 
T Consensus       142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-  220 (626)
T KOG2106|consen  142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-  220 (626)
T ss_pred             ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence            9988899888888899999999887777766653  4456899999988877777777778889999997665544432 


Q ss_pred             CCCceeEEEEeCCCCeEEEE---EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          551 KEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                         .+.++.|+.+.+.+.++   +..+.  ...|.+++|.++|. +++|..+|.|.||+..+.+..+....|  ...|.+
T Consensus       221 ---k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~  292 (626)
T KOG2106|consen  221 ---KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFS  292 (626)
T ss_pred             ---CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEE
Confidence               67799999998877654   44444  46799999999874 889999999999999887777766644  446899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++.-.+|.+|- |+.|..|..||-. -+.++...                                              
T Consensus       293 L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~e----------------------------------------------  324 (626)
T KOG2106|consen  293 LCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETE----------------------------------------------  324 (626)
T ss_pred             EEEecCccEee-cCccceEEecccc-cccccccc----------------------------------------------
Confidence            99999997666 9999999999922 11111111                                              


Q ss_pred             cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1092)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1092)
                                          +|.  ..+.|..++-...+  ++.+...+.|..=.++.                      
T Consensus       325 --------------------lPe--~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~----------------------  358 (626)
T KOG2106|consen  325 --------------------LPE--QFGPIRTVAEGKGD--ILVGTTRNFILQGTLEN----------------------  358 (626)
T ss_pred             --------------------Cch--hcCCeeEEecCCCc--EEEeeccceEEEeeecC----------------------
Confidence                                111  22233333222111  44444444443322111                      


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                      +..+.     ..+|......++..|+...+++++ |+.+++|+  ..+...+.. ...++.|+.|+| .+ .+|.|+..|
T Consensus       359 ~f~~~-----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G  428 (626)
T KOG2106|consen  359 GFTLT-----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATG  428 (626)
T ss_pred             CceEE-----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccc
Confidence            11111     124888889999999998888887 89999999  344443332 456889999999 77 999999999


Q ss_pred             eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358          867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  946 (1092)
                      ...+.|.++...+..-.. ..+++++.|+|+|.+||.|+.|+.|+||.++.+..... .+....+     ..|+.+.||+
T Consensus       429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS~  501 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWSS  501 (626)
T ss_pred             eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeecC
Confidence            999999999665555444 88999999999999999999999999999987553322 2222233     3699999999


Q ss_pred             CCCEEEE-EeCCcEEEEEcCCceeeee-----------------eccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          947 DQTRFLL-VHETHLAIYEAEELTCLKQ-----------------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       947 dg~~la~-~~d~~v~lwd~~~~~~~~~-----------------~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      |+++|.+ +.|-.|..|.....+.+..                 ....|...|..++-|.+.+++++|...|.|++|..+
T Consensus       502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP  581 (626)
T KOG2106|consen  502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP  581 (626)
T ss_pred             CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence            9999999 7788899994332221111                 122357777888888899999999999999999887


Q ss_pred             CCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358         1009 NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1009 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      --...+.+     .....|++.|.  +++|.-.| ..|++.+.|..|..|++
T Consensus       582 c~s~rA~~-----he~~ghs~~vt--~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  582 CSSPRAPS-----HEYGGHSSHVT--NVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cCCCcccc-----eeeccccceeE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence            55444222     22223567777  45565434 56666669999999987

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=269.12  Aligned_cols=290  Identities=18%  Similarity=0.234  Sum_probs=252.1

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ..|.||+++|..+.|+|+|. ++|+|+.|..|.+|++.....-.                  ..+++|.+.|..+.|.+|
T Consensus        41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d  101 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD  101 (338)
T ss_pred             hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence            55789999999999999998 79999999999999976543221                  127799999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      +..|++++.|.+|+.||+++|+..+   .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ...+
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq  176 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ  176 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence            9999999999999999999998776   67899999999996656665 78899999999999999999888875 4567


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC----
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES----  563 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~----  563 (1092)
                      +++++|..  .+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+.+.    +..+++||.+    
T Consensus       177 ltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  177 LTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP  250 (338)
T ss_pred             EEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence            88888854  5568999999999999999999999999999999999999999999998875    7789999987    


Q ss_pred             CCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          564 EGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      ...++..+.++... ......++|+|++..+-+|+.|..+++||......+..+++|.  ..|+++.|+|....+.+++.
T Consensus       251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence            34557888887511 1345678999999999999999999999999988888888664  46999999999999999999


Q ss_pred             CCeEEEE
Q 001358          643 ENRIKIL  649 (1092)
Q Consensus       643 dg~i~iw  649 (1092)
                      |.+|.+=
T Consensus       329 dk~i~lg  335 (338)
T KOG0265|consen  329 DKTIYLG  335 (338)
T ss_pred             CceeEee
Confidence            9998874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.4e-30  Score=272.40  Aligned_cols=550  Identities=12%  Similarity=0.115  Sum_probs=387.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ...|.++|||.+.+.||.+-.+|.|.||++..+-....  .+.++. ..|.+++|++.++   |.+.+.+|.|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            46899999999999999999999999999998654433  455554 5799999997665   89999999999999999


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ++.++.+....+.|.+++.++..  ..++.|+.||.+..++.........  +....+.+.+++|+|++..++.|+.   
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~---  174 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI---  174 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence            99999999999999999997755  6899999999777777666555443  3344578999999999999999986   


Q ss_pred             CceeEEEEeCCCCeEEEEEeec----cc-cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          553 GESFLVEWNESEGAIKRTYQGL----QL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                       ++.|++||..++..+......    .. ..--|+++.|-.+ ..+++|...|+|.+||...+.+++....+..  .|.+
T Consensus       175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~  250 (691)
T KOG2048|consen  175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA  250 (691)
T ss_pred             -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence             778999999999877632211    10 1234778888765 5799999999999999999999998887744  6999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++..+++.++++++.|+.|.-|...++..-                                                  
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--------------------------------------------------  280 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE--------------------------------------------------  280 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence            999999999999999999988877654210                                                  


Q ss_pred             cccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1092)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1092)
                           |-..           .+...|...|.++++.++  .+++++.|..+.+-.....+.              .+   
T Consensus       281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---  325 (691)
T KOG2048|consen  281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---  325 (691)
T ss_pred             -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---
Confidence                 1100           011237778888888877  688888888777632211000              00   


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---------eeEEecCCCCCeEEEEEcCCCCCE
Q 001358          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNV  858 (1092)
Q Consensus       788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~d~~~  858 (1092)
                      .  .+....    ...  .-+...|..++++.-....+.+|.+.+.-         ..+-.......|.+.+.|| +|++
T Consensus       326 h--~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~  396 (691)
T KOG2048|consen  326 H--RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL  396 (691)
T ss_pred             h--hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence            0  000000    001  12345566666776677888889876541         1222233456899999999 9999


Q ss_pred             EEEEeCCCeEEEEEcCCceee-----EeeccccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCC
Q 001358          859 IAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1092)
Q Consensus       859 lasg~~dg~v~iwd~~~~~~~-----~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~  932 (1092)
                      ++.+. -..++||.+.....+     .....-.-....+.|+-|++.++.++ .+..+.+.++++...+....++.. ..
T Consensus       397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~  474 (691)
T KOG2048|consen  397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK  474 (691)
T ss_pred             EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence            99776 446888888753222     12222344677899999999888888 777888888887654433333222 12


Q ss_pred             cCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 001358          933 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       933 ~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      .   +.|..++.||||++||+ +..+.|.+|++++++.-... ..-...|+.++|+| +-..|+.+..++.+.-||++..
T Consensus       475 ~---~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~  550 (691)
T KOG2048|consen  475 C---PSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR  550 (691)
T ss_pred             C---CcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence            2   36999999999999999 78899999999988755432 22357899999995 5567888889999999999554


Q ss_pred             ceEEeeccc--cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1011 EVQCRILST--AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1011 ~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .+ .++...  ..+|..+..-.-....+.|+|.+ ...+...+.+-+++.|+.
T Consensus       551 ~l-~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  551 NL-TRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             hh-hhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecC
Confidence            42 222100  11111110111112346677753 444444556667777764

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-33  Score=259.61  Aligned_cols=292  Identities=15%  Similarity=0.211  Sum_probs=253.2

Q ss_pred             CCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      .+|...+++|..|.+.|.++.|+-||+| ..+++.|.+|++|+...|.++++                   +.+|...|.
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl   63 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL   63 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence            4577778899999999999999999995 67777899999999999999987                   779999999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC--Ccee
Q 001358          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSRT  478 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~--~~~~  478 (1092)
                      .++.+.|...+++|+.|..|.+||+++|+.++   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||-++  -+++
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence            99999999999999999999999999998777   7899999999999999999  899999999999999875  4678


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +.+......|.++.+    .+..+++|+.||++|.||++.+.....+  .+.+|++++|++|++..++++.    ++.++
T Consensus       139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr  208 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR  208 (307)
T ss_pred             chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence            888888899999987    3468999999999999999887654443  4568999999999999998876    67799


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      +.|-.+|+++..+.||...... ..++++.....+++|++||.|++||+.+...+..+..+.. ..+..++++|.-..++
T Consensus       209 LlDk~tGklL~sYkGhkn~eyk-ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~  286 (307)
T KOG0316|consen  209 LLDKETGKLLKSYKGHKNMEYK-LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI  286 (307)
T ss_pred             ecccchhHHHHHhcccccceee-eeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence            9999999999999999833333 3456777778999999999999999999999999887754 4578999999877777


Q ss_pred             EEeCCCeEEEEE
Q 001358          639 VIANENRIKILE  650 (1092)
Q Consensus       639 ~~~~dg~i~iw~  650 (1092)
                      ++... .+..|.
T Consensus       287 ~A~~~-~~~~~~  297 (307)
T KOG0316|consen  287 TATGH-GDLFWY  297 (307)
T ss_pred             EecCC-ceecee
Confidence            77654 445554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.9e-33  Score=267.59  Aligned_cols=286  Identities=18%  Similarity=0.296  Sum_probs=249.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|++.|..+.|+|+|.+||+|+.|..|.+|++....  .....+++|.+.|..+.|.+|+.  .+++++.|++|+.||
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEEe
Confidence            78999999999999999999999999999999976543  33447889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +++|++++.+++|...|+++... ..+..++.+++.||++++||++......++. ....++++.|..++..+++++-  
T Consensus       119 ~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI--  194 (338)
T KOG0265|consen  119 AETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI--  194 (338)
T ss_pred             cccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc--
Confidence            99999999999999999999843 2344688899999999999999877766654 3447899999999999999987  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCC--C
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE--N  625 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~--v  625 (1092)
                        ++.|.+||++.+.....+.||.   ++|+.+..+|+|.++++-+.|.++++||++..    .++..+..+.+.-.  .
T Consensus       195 --dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl  269 (338)
T KOG0265|consen  195 --DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL  269 (338)
T ss_pred             --cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence              4559999999999999999999   99999999999999999999999999998753    34666665544322  4


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      ..++|+|+++.+.+|+.|..+++||......+..+.+|...|.++.|.|                      ....+.+++
T Consensus       270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~~  327 (338)
T KOG0265|consen  270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSCS  327 (338)
T ss_pred             ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEec
Confidence            5789999999999999999999999999999999999999999999985                      455667777


Q ss_pred             cccccce
Q 001358          706 AENKSEV  712 (1092)
Q Consensus       706 ~d~~i~~  712 (1092)
                      .|.+|.+
T Consensus       328 sdk~i~l  334 (338)
T KOG0265|consen  328 SDKTIYL  334 (338)
T ss_pred             cCceeEe
Confidence            7776654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.8e-33  Score=313.60  Aligned_cols=294  Identities=21%  Similarity=0.350  Sum_probs=257.0

Q ss_pred             eEecccC-CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC--ceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       327 ~~~l~~h-~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .+.+.+| ...|.|+.|||||+ .+++++.|+.+++|+..+++  ....                   +.+|...|..++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~  210 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA  210 (456)
T ss_pred             eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence            5666665 77999999999999 59999999999999997776  3432                   578999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEc-cCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |+|||+++++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+|+  ++++|+.|++|+|||+++++++..+.
T Consensus       211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence            9999999999999999999999 4444444   7889999999999999997  89999999999999999999999999


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCC--ceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +|.+.|++++|  .+++.+|++++.||.|++||+.++.  ....+..+..  +++.+.|+|++.++++++.    ++.+.
T Consensus       286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~  359 (456)
T KOG0266|consen  286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK  359 (456)
T ss_pred             ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence            99999999999  5577899999999999999999988  3455554444  5999999999999999986    66799


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      +||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..++++|..++++
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA  438 (456)
T ss_pred             EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence            99999999999999998322245566668899999999999999999999999999988775 45688999999999999


Q ss_pred             EEe--CCCeEEEEECC
Q 001358          639 VIA--NENRIKILETP  652 (1092)
Q Consensus       639 ~~~--~dg~i~iw~~~  652 (1092)
                      +++  .|+.+++|...
T Consensus       439 s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  439 SSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ecCcCCCceEEEecCC
Confidence            998  68999999754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-33  Score=276.23  Aligned_cols=285  Identities=20%  Similarity=0.286  Sum_probs=264.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|..+|+.+-|.|+-...++++.|++|++||..+|+..+   .++||...|..++|+..|+  ++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence            77899999999999999999999999999999999998755   7899999999999999999  899999999999999


Q ss_pred             CCC-CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .++ .++++.+.+|...|.+++|.|.+  .++++++.|.+|+.|+++++-++.++.+|...|..+..+.||..+++++. 
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-  255 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-  255 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence            887 67888999999999999998764  69999999999999999999999999999999999999999999999976 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---------------CCEEEEEeCCCeEEEEECCCCceEEE
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~s~dg~i~iwd~~~~~~~~~  615 (1092)
                         +.+|++|-..++++...+..|+   .+|.+++|.|.               ++++.+++.|++|++||+.++.++.+
T Consensus       256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence               6679999999999999999998   89999999773               25889999999999999999999999


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCC
Q 001358          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1092)
                      +.+|.  ..|..++|+|.|++|+++.+|+++++||+.+.++...+..|..-++++.|.                      
T Consensus       330 L~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh----------------------  385 (406)
T KOG0295|consen  330 LVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH----------------------  385 (406)
T ss_pred             Eeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence            98775  479999999999999999999999999999999999999999999999886                      


Q ss_pred             CCcccceeeccccccceec
Q 001358          696 EDVKPEISVEAENKSEVEK  714 (1092)
Q Consensus       696 ~d~~~l~s~~~d~~i~~w~  714 (1092)
                      .+..++++|+-|.++++|.
T Consensus       386 ~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  386 KTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCCceEEeccccceeeeee
Confidence            3445889999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.3e-32  Score=269.15  Aligned_cols=294  Identities=14%  Similarity=0.233  Sum_probs=258.2

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++.+|.+.|.|+++-|..+++++|+.|++|+|||+.+|+...   ++.||-..|..+++|+-..  ++++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            477899999999999999999999999999999999996544   7899999999999999888  89999999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      |++..+.++.+.||-..|.+++.+|.-  ..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+. 
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-  297 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH-  297 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence            999999999999999999999998765  58999999999999999999999999999999999999998889999976 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         |.+|++||+..|+...++..|.   ..|.+++.+|....+++++.|. |+-|++..|..+..+..+.  ..+++++.
T Consensus       298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~--~iintl~~  368 (460)
T KOG0285|consen  298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHN--AIINTLSV  368 (460)
T ss_pred             ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcccccc--ceeeeeee
Confidence               7789999999999999998888   8999999999998888888765 8999999999999877664  45888888


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +.|+ ++++|+++|.+..||.+++..++.......+                                     |+     
T Consensus       369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS-----  405 (460)
T KOG0285|consen  369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS-----  405 (460)
T ss_pred             ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence            8776 7889999999999999988665544211000                                     00     


Q ss_pred             ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeec
Q 001358          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP  764 (1092)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~  764 (1092)
                                          ......|.+.+|...|.+|+++..|..|++|.-+
T Consensus       406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence                                0134568888999999999999999999999743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.9e-34  Score=282.70  Aligned_cols=286  Identities=21%  Similarity=0.310  Sum_probs=249.1

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ..-+..|..|.|.|+|++ |++|+..|.+.+|+..+-      +|+             .++..|..+|.++.||++|.+
T Consensus        93 NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nFE-------------tilQaHDs~Vr~m~ws~~g~w  152 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NFE-------------TILQAHDSPVRTMKWSHNGTW  152 (464)
T ss_pred             cccccceeeEEEcCCCce-eEeecccccEEEecCcee------eHH-------------HHhhhhcccceeEEEccCCCE
Confidence            334568999999999996 789999999999997432      111             236789999999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceE
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      +++|+.+|.|++|+..-....    .+.+ |...|++++|||+..  .+++|+.||+|+|||....+.-..+.||.-.|.
T Consensus       153 miSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  153 MISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             EEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence            999999999999998764322    2334 558999999999888  799999999999999999988888999999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      ++.|+|..  .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++.    |..++++|+++.+.+.
T Consensus       227 svdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~  300 (464)
T KOG0284|consen  227 SVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELF  300 (464)
T ss_pred             eeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHH
Confidence            99998865  59999999999999999999999999999999999999999999999986    6679999999999999


Q ss_pred             EEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358          570 TYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ++++|.   ..+.++.|+|-.. .|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|=|..|++|+.|.++++
T Consensus       301 ~~r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  301 TYRGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             Hhhcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceee
Confidence            999998   8999999999754 556689999999999986666655543 34467999999999999999999999999


Q ss_pred             EECC
Q 001358          649 LETP  652 (1092)
Q Consensus       649 w~~~  652 (1092)
                      |...
T Consensus       377 w~r~  380 (464)
T KOG0284|consen  377 WTRN  380 (464)
T ss_pred             eccC
Confidence            9754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-33  Score=276.87  Aligned_cols=292  Identities=16%  Similarity=0.200  Sum_probs=251.2

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++..|.+.|.-+.||++|+|||+++.|.+..||++.....++...++.+|..+|..+.||||.+  +|++|+.|..+.+|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence            3778999999999999999999999999999999987776777778999999999999999999  79999999999999


Q ss_pred             ECCCCceeEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEecCCCEEEEEe
Q 001358          471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       471 d~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      |+.+|.+.+.+. +|...+.+++|.|  ||..+++|+.|+++..||++.... ..+.+ ....|.+++.++||+++++..
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~  373 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT  373 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence            999999988774 3567899999954  778999999999999999876442 22222 234689999999999999887


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    +..|++++..+.........+    .+|++.+.+.+++++++--.+..+++||++....+....++.....+..-
T Consensus       374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS  445 (519)
T KOG0293|consen  374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS  445 (519)
T ss_pred             c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence            6    556999998877665544443    58999999999999999999999999999988888888777655555566


Q ss_pred             EEcc-CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          629 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       629 ~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ||.- +..++++|+.|+.|+||+..+++++..+.||...|.+++++|                     .+..++|+++.|
T Consensus       446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDD  504 (519)
T KOG0293|consen  446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDD  504 (519)
T ss_pred             ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCC
Confidence            6765 568999999999999999999999999999999999999996                     456779999999


Q ss_pred             cccceecee
Q 001358          708 NKSEVEKPL  716 (1092)
Q Consensus       708 ~~i~~w~~~  716 (1092)
                      |+||+|-..
T Consensus       505 gtIRIWg~~  513 (519)
T KOG0293|consen  505 GTIRIWGPS  513 (519)
T ss_pred             CeEEEecCC
Confidence            999999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.4e-34  Score=289.60  Aligned_cols=295  Identities=16%  Similarity=0.260  Sum_probs=253.6

Q ss_pred             CCcceeEecccCCCCceEEeecC-CCceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358          322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +|+..+.++.||+..|+++.|.| .+. ||++|+.|+.|+||++.. +.++++                   +.||..+|
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V  261 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV  261 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence            68899999999999999999999 665 999999999999999987 677765                   77899999


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      ..++|+++|..+.+++.|+.|++||+++|+++..   +. ....++|+.|.||+.. .+++|+.|+.|+.||+++++.++
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence            9999999999999999999999999999987653   21 3346899999999955 78889999999999999999999


Q ss_pred             EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      ++..|-+.|..+.|.  +++.++++.+.|++++||+.+..-.... .........++..+|++.++++-+.    ++.|.
T Consensus       337 eYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~  410 (503)
T KOG0282|consen  337 EYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA  410 (503)
T ss_pred             HHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence            999999999999995  4778999999999999999987765543 3334456788999999999988765    66788


Q ss_pred             EEeCCC---CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CC
Q 001358          559 EWNESE---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NG  634 (1092)
Q Consensus       559 iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~  634 (1092)
                      ++....   ....+.+.||... +.-..+.|+|||.+|++|+.||.+.+||.++-+++..+..|.  ..+..+.|+| ..
T Consensus       411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP  487 (503)
T ss_pred             EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence            887543   2344567887632 455678999999999999999999999999999999998774  4688999999 46


Q ss_pred             CEEEEEeCCCeEEEEE
Q 001358          635 TLLAVIANENRIKILE  650 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~  650 (1092)
                      ..+|+++.||.|++|+
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            7899999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.9e-31  Score=250.11  Aligned_cols=293  Identities=16%  Similarity=0.235  Sum_probs=237.9

Q ss_pred             ccccccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE
Q 001358          731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  809 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~  809 (1092)
                      .+|.+++..++++|. |..|++++.|..|++|+.....              -|.       ....+ ..+|...|++++
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-------ck~vl-d~~hkrsVRsvA   68 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-------CKTVL-DDGHKRSVRSVA   68 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-------EEEec-cccchheeeeee
Confidence            358889999999999 8999999999999999865310              011       11112 125999999999


Q ss_pred             EecCCCEEEEEe-CCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeeEeec
Q 001358          810 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE  883 (1092)
Q Consensus       810 ~s~dg~~l~~~s-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~  883 (1092)
                      |+|.|++||+++ |.++.||.-.  +.+++.++.+|.++|.|++|++ +|++||+++.|++|-||.+..+   ++...|+
T Consensus        69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~  147 (312)
T KOG0645|consen   69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ  147 (312)
T ss_pred             ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence            999999999999 8999999876  4578999999999999999999 9999999999999999999854   5789999


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEE
Q 001358          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY  962 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lw  962 (1092)
                      .|+..|..+.|+|...+|+|+|.|.+|++|+-..+  ....+.+.+.++..   .|.+++|.+.|..|++ +.|++++||
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW  222 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCC--CCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence            99999999999999999999999999999988731  12557788888875   7999999999999888 578899999


Q ss_pred             EcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001358          963 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus       963 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
                      ...+     .+..-|++.+..+.|. + ..|++++.|+.|+++.-..+-.-..+... ....+.|...|+  ++.+.|..
T Consensus       223 ~~~~-----~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~  292 (312)
T KOG0645|consen  223 RLYT-----DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKV  292 (312)
T ss_pred             eecc-----CcchhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCC
Confidence            8652     2344578899999998 4 48999999999999987754222223211 122233566666  68899965


Q ss_pred             CCEEEEEeCCCcEEEEecC
Q 001358         1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .++|++|++||.|++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            7899999999999999874

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-28  Score=261.51  Aligned_cols=505  Identities=15%  Similarity=0.173  Sum_probs=351.2

Q ss_pred             cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecC-CcceEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001358          440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD  517 (1092)
Q Consensus       440 h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~  517 (1092)
                      ...+|.++||+.+++  .|+.+-.||.|.+|++..+=.. ..+.++ ...|.+++|.   ++..|++.+.+|.|..||+.
T Consensus        24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEecc
Confidence            456799999999999  6999999999999999876433 455554 4579999996   45689999999999999999


Q ss_pred             CCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001358          518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  597 (1092)
Q Consensus       518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s  597 (1092)
                      +.+....+...++.|.+++.+|.+..++.++.    ++.++.++...+.......-.. +.+.+.++.|+|++..+++|+
T Consensus        99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~Gs  173 (691)
T KOG2048|consen   99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGGS  173 (691)
T ss_pred             cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEecc
Confidence            99999999999999999999999999999875    5578888887776654332222 247899999999999999999


Q ss_pred             CCCeEEEEECCCCceEEEEeC-----CC-CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeee
Q 001358          598 DDHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1092)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~  671 (1092)
                      .||.|++||..++..+.....     .. ...-|.++.|-.+ ..+++|...|+|.+||...+..++.+..         
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~---------  243 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSC---------  243 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhh---------
Confidence            999999999999988773321     11 1112445555543 4678888888888888887766665554         


Q ss_pred             ecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEE
Q 001358          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  751 (1092)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  751 (1092)
                                                                                   |...|.+++..+++.++++
T Consensus       244 -------------------------------------------------------------h~adVl~Lav~~~~d~vfs  262 (691)
T KOG2048|consen  244 -------------------------------------------------------------HDADVLALAVADNEDRVFS  262 (691)
T ss_pred             -------------------------------------------------------------hhcceeEEEEcCCCCeEEE
Confidence                                                                         4556666777777777777


Q ss_pred             eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001358          752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV  830 (1092)
Q Consensus       752 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~  830 (1092)
                      ++.|+.+..|....+..             -|-..         .....|...|.+++..++  .+++|+ |..+.+-..
T Consensus       263 aGvd~~ii~~~~~~~~~-------------~wv~~---------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  263 AGVDPKIIQYSLTTNKS-------------EWVIN---------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSS  318 (691)
T ss_pred             ccCCCceEEEEecCCcc-------------ceeee---------ccccCCcccceeeeeecc--eEEecceeeEEEEccc
Confidence            77777776665543211             02111         111248889999999887  555555 666666554


Q ss_pred             CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---------eeEeeccccCCeEEEEEcCCCCEE
Q 001358          831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNIL  901 (1092)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l  901 (1092)
                      ...+..........+-.+..... ..++|..--.+..+.+|.+.+.-         +.+-...-...|.+.+.||||+++
T Consensus       319 ~~~~~~~h~~~~~~p~~~~v~~a-~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~I  397 (691)
T KOG2048|consen  319 REFKNMDHRQKNLFPASDRVSVA-PENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLI  397 (691)
T ss_pred             cccCchhhhccccccccceeecC-ccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEE
Confidence            43221111110111112222222 34566666667788889887651         112222234569999999999999


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCCcee--eeeec-cC
Q 001358          902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTC--LKQWF-PI  976 (1092)
Q Consensus       902 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~v~lwd~~~~~~--~~~~~-~~  976 (1092)
                      +.+.- ..++||.++.........+.......   .....+.|+-|+..++. + ....+.+++..+...  +.... .+
T Consensus       398 a~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~  473 (691)
T KOG2048|consen  398 AISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQA  473 (691)
T ss_pred             EEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccccc
Confidence            97654 44889988864322222222221111   25778999999988777 4 556788887765432  22211 12


Q ss_pred             CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001358          977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus       977 h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
                      --..|..+..|+||.||++.+.+|.|.+|++.+++......   .+       .....+++++|.+...++.+..+++|.
T Consensus       474 ~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rl-------n~~vTa~~~~~~~~~~lvvats~nQv~  543 (691)
T KOG2048|consen  474 KCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RL-------NIDVTAAAFSPFVRNRLVVATSNNQVF  543 (691)
T ss_pred             CCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---cc-------CcceeeeeccccccCcEEEEecCCeEE
Confidence            35789999999999999999999999999999997764332   01       123446788877778999999999999


Q ss_pred             EEecCCCC
Q 001358         1057 VIEPNEPG 1064 (1092)
Q Consensus      1057 ~w~~~~~~ 1064 (1092)
                      -+|+...+
T Consensus       544 efdi~~~~  551 (691)
T KOG2048|consen  544 EFDIEARN  551 (691)
T ss_pred             EEecchhh
Confidence            99995433

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.7e-32  Score=296.30  Aligned_cols=264  Identities=14%  Similarity=0.197  Sum_probs=229.7

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccc---------cCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT---------LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  803 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  803 (1092)
                      ....+.|..|++|+..++.+-.|..|++|.+...+..         ......+.......|..++.....  +.  +|.+
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L~--GH~G  452 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--LY--GHSG  452 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--ee--cCCC
Confidence            3456889999999999999999999999999854321         111112222344455544442322  32  5999


Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      +|....|+|+.++|++++ |+++|+|.+.+..++..+++|..+|..+.|+| -|.++|||+.|++.++|......+++.+
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence            999999999999999999 69999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEE
Q 001358          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAI  961 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~l  961 (1092)
                      .||.+.|.|+.|+|+..++|+||.|.+|++||+.+|.     .++.+.||..   +|.+++|||+|++||+ +.|+.|.+
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence            9999999999999999999999999999999999966     5666778776   8999999999999999 58899999


Q ss_pred             EEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358          962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      ||+.++..+.. +.+|.+.|.++.||.||..||+||.|++|++||+..-
T Consensus       604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999887 5689999999999999999999999999999998754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.4e-30  Score=283.88  Aligned_cols=287  Identities=25%  Similarity=0.412  Sum_probs=254.8

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +++++|.+.|++++|+|+++ ++++++.||.|.+|++.+++....                   +..|...+..+.|+|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~   62 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD   62 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence            56789999999999999998 688999999999999998875543                   5678899999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      +++|++++.++.|++||+.+++.+.   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++....+..|...
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence            9999999999999999999875444   5678998999999999987  7888888999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      +.++++++.  +.++++++.||.|++||++..+....+..+...+.++.|+|+++.+++++.    ++.+++||..+++.
T Consensus       138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~  211 (289)
T cd00200         138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC  211 (289)
T ss_pred             EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence            999999664  578888888999999999988888888888889999999999999998875    56799999999998


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      +..+..+.   ..+.++.|+|++.++++++.+|.+++|++.+++....+..+  ...+.+++|+|+++++++++.||.++
T Consensus       212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence            88887766   79999999999888888888999999999998888888744  34689999999999999999999999


Q ss_pred             EEE
Q 001358          648 ILE  650 (1092)
Q Consensus       648 iw~  650 (1092)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=6.7e-33  Score=269.78  Aligned_cols=276  Identities=21%  Similarity=0.305  Sum_probs=234.5

Q ss_pred             CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      ..+.|.|+.+..+   .+++|..|++|+|||..+-.+++.                   +.||++.|.|+.|.  .+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqyd--~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQYD--ERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeecc--ceEEE
Confidence            4568999999643   489999999999999999888875                   88999999999995  67999


Q ss_pred             EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcceE
Q 001358          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVY  489 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~  489 (1092)
                      +|+.|.+|+|||+++|+++.   ++-+|...|..+.|+..    ++++++.|.+|.|||+.....   .+.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999887   67789999999999853    799999999999999987653   356789999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      .+.|    +.+++++++.|.+|++|++.+.+.+.++.+|...|.++.+  .|+++++|+.    +.+|++||+..|.+++
T Consensus       325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR  394 (499)
T ss_pred             eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence            9988    4569999999999999999999999999999999877764  5788888876    7789999999999999


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-------eCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .++||+   .-|.++.|.  .+.+++|+.||+|++||+..+......       ..-.+...|..+.|  |...+++++.
T Consensus       395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH  467 (499)
T KOG0281|consen  395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH  467 (499)
T ss_pred             HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC
Confidence            999999   899999995  578999999999999999876433111       11122334666666  4677899999


Q ss_pred             CCeEEEEECCCCCe
Q 001358          643 ENRIKILETPESNS  656 (1092)
Q Consensus       643 dg~i~iw~~~~~~~  656 (1092)
                      |.+|.|||..++..
T Consensus       468 ddtILiWdFl~~~~  481 (499)
T KOG0281|consen  468 DDTILIWDFLNGPP  481 (499)
T ss_pred             CCeEEEEEcCCCCc
Confidence            99999999987643

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.9e-32  Score=271.04  Aligned_cols=280  Identities=16%  Similarity=0.218  Sum_probs=242.1

Q ss_pred             CCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccce
Q 001358          623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1092)
                      ..|..+.|.|+|+.|++|+..|.+.+|+...-                                                
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f------------------------------------------------  128 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF------------------------------------------------  128 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCcee------------------------------------------------
Confidence            45889999999999999999999999986311                                                


Q ss_pred             eeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCcc
Q 001358          703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1092)
Q Consensus       703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~  782 (1092)
                                            .+.+-...|.+.|.++.|+++|.+++++..+|.|++|+...+.            ++.
T Consensus       129 ----------------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn------------Vk~  174 (464)
T KOG0284|consen  129 ----------------------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN------------VKI  174 (464)
T ss_pred             ----------------------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh------------hHH
Confidence                                  0000112388999999999999999999999999999865431            111


Q ss_pred             ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE
Q 001358          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI  861 (1092)
Q Consensus       783 ~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las  861 (1092)
                      .              ...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|.+++|+| ...+||+
T Consensus       175 ~--------------~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLias  239 (464)
T KOG0284|consen  175 I--------------QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIAS  239 (464)
T ss_pred             h--------------hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEE
Confidence            1              012568999999999999999998 69999999999999899999999999999999 7789999


Q ss_pred             EeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001358          862 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1092)
                      |+.|..|++||.++|.++.++.+|...|..+.|+|++++|+|+|.|..++++|+.+     .+.+....+|..   .+.+
T Consensus       240 gskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~  311 (464)
T KOG0284|consen  240 GSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTS  311 (464)
T ss_pred             ccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hhee
Confidence            99999999999999999999999999999999999999999999999999999985     234566677765   7999


Q ss_pred             EEEecCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          942 IQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       942 l~~s~dg~~la~--~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                      ++|+|-..-|.+  |.|+.|..|.+..-+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            999998766655  699999999999778888888899999999999999999999999999999964

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.98  E-value=6.3e-30  Score=267.57  Aligned_cols=683  Identities=16%  Similarity=0.184  Sum_probs=366.5

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+-.|.+|++.|+.+.|||-...|||+||.|..|+||.+..|-...- +            -....+.+..-.|-++.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-S------------ape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-S------------APEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-C------------CcceeecCCceEEEEeec
Confidence            455678899999999999998777999999999999999985422110 0            011225555668899999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC-CceeEEEec
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~  483 (1092)
                      +|...-|...+..|+++|||+.+++.+.   ++.+|...|.++.|+.||+  +|++++.|+.|+|||.+. ++.++...+
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9977666666688899999999986554   7889999999999999999  899999999999999874 688888888


Q ss_pred             CCcceE-EEeecccCCccEEEEEecC----CeEEEEEcCCCCc-eEEecCC-CCceEEEEEecCCCEEEEEecCCCCcee
Q 001358          484 HGAPVY-SLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       484 ~~~~v~-~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~-~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      |.+.-- .+.|  .++-..|++.+.+    ..|++||.+.... ..++... ...|.---|.||.++|+.++   .++..
T Consensus       212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~  286 (1012)
T KOG1445|consen  212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK  286 (1012)
T ss_pred             cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence            876521 2333  4454567666655    4589999876543 2333222 22555667899999988876   45777


Q ss_pred             EEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe---------C-------
Q 001358          557 LVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---------A-------  618 (1092)
Q Consensus       557 i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---------~-------  618 (1092)
                      ++.+.+...+..  ..+...-  .......++-|....-+..++  ..+++.+.+...+...-         .       
T Consensus       287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPe  362 (1012)
T KOG1445|consen  287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPE  362 (1012)
T ss_pred             EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCcc
Confidence            888877654431  1111000  011122233332211111111  11111111111110000         0       


Q ss_pred             --------------CCCCCCCceEEEccCCC-----------EEEEEeCCCeEEEEECCCC-Ceeeec------------
Q 001358          619 --------------GGGLPENPRICFNKNGT-----------LLAVIANENRIKILETPES-NSVDAA------------  660 (1092)
Q Consensus       619 --------------~~~~~~v~~v~~s~~~~-----------~l~~~~~dg~i~iw~~~~~-~~~~~~------------  660 (1092)
                                    .+....+..+...|..+           .-.++..-.-+.+.-.... ......            
T Consensus       363 T~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~  442 (1012)
T KOG1445|consen  363 TRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQE  442 (1012)
T ss_pred             ccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCcccc
Confidence                          00001111111111000           0000000000000000000 000000            


Q ss_pred             ---ccccccceeeeecCCcccccccccCCceee-cCCCCCCcccceeeccccccceeceee---c----cCc---cceec
Q 001358          661 ---GVLSDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKPEISVEAENKSEVEKPLF---A----RPS---ECQSL  726 (1092)
Q Consensus       661 ---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~d~~~l~s~~~d~~i~~w~~~~---~----~~~---~~~~~  726 (1092)
                         -.....+..+.+.|.....+.......... .+..+    .+-+.+.. .+.+-....   .    .+.   ..+.-
T Consensus       443 qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS----~~s~~~~~-~~~~~kP~S~plt~~~s~~s~~~P~~~k  517 (1012)
T KOG1445|consen  443 QPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSS----PISTISPE-PVTIVKPASTPLTDSVSTPSVVGPAFGK  517 (1012)
T ss_pred             CCCcCcchhhhhhcccccccccCccCCCcccccccCCCC----CccccCCC-cccccCCCCcccccccccccccCccccc
Confidence               000011111111111111100000000000 00000    00000000 000000000   0    000   00000


Q ss_pred             ccCC---ccccccE---EEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCC
Q 001358          727 LLPS---KVKANKI---SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  800 (1092)
Q Consensus       727 ~~~~---~~~~~~i---~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  800 (1092)
                      ..|.   ..-...+   ..+-.++.-+..-+.  -|.+.-|.      ..+|..... ...+-++.    -..       
T Consensus       518 svPe~~~~~~g~~~sat~~v~~s~s~r~~s~v--~G~iSKFR------H~~Gt~ghk-s~hi~NLr----nln-------  577 (1012)
T KOG1445|consen  518 SVPEQPPVNFGKPISATNRVPLSQSVRPKSCV--VGQISKFR------HVDGTQGHK-SAHISNLR----NLN-------  577 (1012)
T ss_pred             cCCCCCCcccCCCcccccccccccccccccee--eccchhee------eccCccccc-hhhhhhhh----ccc-------
Confidence            0000   0000000   000000000000000  00000000      000000000 00000000    000       


Q ss_pred             CCCCeeEEEEecCCCEEEEE---eCCeEEEEEcCCc-eeeEE-ecC--CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001358          801 SQEAVPCFALSKNDAYLFSA---SGGVISLYIVMTF-KTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~---sdg~i~iwd~~~~-~~~~~-~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1092)
                      ..-+-.|--|..+.+.+|+-   +.|.|.||++... ++... +.+  ....|+.+.|.|.|...||+++.||.|++|.+
T Consensus       578 ~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~  657 (1012)
T KOG1445|consen  578 TRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL  657 (1012)
T ss_pred             ccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence            11111222345566677654   3689999999743 32211 111  34578999999999999999999999999999


Q ss_pred             CCc-------eeeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEe
Q 001358          874 RSS-------EVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  945 (1092)
Q Consensus       874 ~~~-------~~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  945 (1092)
                      ..+       ..-..+.+|...|+++.|+|= ...|++++.|-+|++||+.+.+     ....+.+|..   .|..++||
T Consensus       658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWS  729 (1012)
T KOG1445|consen  658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWS  729 (1012)
T ss_pred             ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEEC
Confidence            764       345778899999999999993 5789999999999999999854     3344556665   89999999


Q ss_pred             cCCCEEEE-EeCCcEEEEEcCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEeCCC----cEEEEECCCCceEEeeccc
Q 001358          946 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       946 ~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg----~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      |||+.+|+ +.||+|++|+..+++....-..+ -..+-..+.|.-||+++++.+.|.    .|.+||..+..+..-....
T Consensus       730 pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~  809 (1012)
T KOG1445|consen  730 PDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV  809 (1012)
T ss_pred             CCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee
Confidence            99999999 89999999999877643221222 144556788999999999888774    4888988776532111111


Q ss_pred             cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCC
Q 001358         1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                      ....+.    .   +-=.++++.+-+|++|-.|..|.+|++..+.|..-.+.|+.
T Consensus       810 lDvaps----~---LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~  857 (1012)
T KOG1445|consen  810 LDVAPS----P---LVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFM  857 (1012)
T ss_pred             ecccCc----c---ccccccCCCceEEEecCCCceEEEEEecCCCceeeeccccc
Confidence            111111    1   11125666677899999999999999999998776665554

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2.9e-30  Score=293.04  Aligned_cols=291  Identities=21%  Similarity=0.304  Sum_probs=254.3

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC-
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-  472 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-  472 (1092)
                      .|...|.++.|||||+++++++.++.+++|+..+++. .....+.+|...|.+++|+||++  ++++++.|++|+|||+ 
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence            3588999999999999999999999999999977662 12235679999999999999999  8999999999999999 


Q ss_pred             CCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ..+..++++.+|...|++++|++  +++++++|+.|++|++||+++++....+..|...|.+++|+++|++|++++.   
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---  308 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---  308 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence            56689999999999999999966  5589999999999999999999999999999999999999999999999865   


Q ss_pred             CceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC-CCCceEE
Q 001358          553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC  629 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~  629 (1092)
                       ++.|++||..++.  +...+.++.... ++..+.|+|++.++++++.|+.+++||+..+........+... ..+....
T Consensus       309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence             7789999999999  567888877333 7999999999999999999999999999999999888877553 1233455


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCCeeeecccc-cccceeeeecCCcccccccccCCceeecCCCCCCcccceeec--c
Q 001358          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A  706 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~  706 (1092)
                      .++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++                      +...++++++  .
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG  444 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence            5789999999999999999999999999999998 7777777775                      5566777777  6


Q ss_pred             ccccceecee
Q 001358          707 ENKSEVEKPL  716 (1092)
Q Consensus       707 d~~i~~w~~~  716 (1092)
                      |+.+++|..+
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            7889999753

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2.4e-31  Score=271.71  Aligned_cols=290  Identities=15%  Similarity=0.192  Sum_probs=253.5

Q ss_pred             eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccC-CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358          391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      .+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++   ++.+|..+|.+++|+++|.  .++|+|.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            4889999999999999 899999999999999999987 65555   7889999999999999999  799999999999


Q ss_pred             EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +||+++|+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+++++.+
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            99999999999986 45678889998765 57999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEEEEeCCCCCCCC
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN  625 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~v  625 (1092)
                      .    +..+++|+...+-.+.....+.  .....++..+|+++++++-+.|+.|.++.+...-   ....+.+|.....-
T Consensus       362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            6    5579999999887776655544  3567889999999999999999999999865432   22344444433445


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      ..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|.                     ....+++++
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~  494 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG  494 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence            67999999999999999999999999999999999999999999999864                     345689999


Q ss_pred             cccccceec
Q 001358          706 AENKSEVEK  714 (1092)
Q Consensus       706 ~d~~i~~w~  714 (1092)
                      .+|.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.4e-30  Score=238.22  Aligned_cols=271  Identities=20%  Similarity=0.308  Sum_probs=239.7

Q ss_pred             eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      .++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++   ++.+|...|..++.+.|+.  .+++|+.|..+.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v   85 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV   85 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence            3477899999999999999999999999999999999998777   7889999999999999998  6999999999999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ||+++|+.++.+.+|.+.|+.+.|+  .+...+++|+.|..+++||-++..  +++.+......|.++..+  +..++++
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaG  161 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAG  161 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEee
Confidence            9999999999999999999999995  456799999999999999987654  556666666778777664  5667777


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    +++++.||++.|+...-+-+     .+|+++.|+++++..++++.|+++++.|-.+|+++....+|.....-..
T Consensus       162 S~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld  232 (307)
T KOG0316|consen  162 SV----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD  232 (307)
T ss_pred             cc----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence            66    77799999999998777776     5699999999999999999999999999999999999998877655567


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccccccc-ceeeeecCCccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTV  678 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  678 (1092)
                      ++++....++++|++||.+.+||+.+...+..+..+... +..+++.|....
T Consensus       233 c~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~  284 (307)
T KOG0316|consen  233 CCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD  284 (307)
T ss_pred             eeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence            888888899999999999999999999999998888877 788888865443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=6.7e-31  Score=244.85  Aligned_cols=291  Identities=16%  Similarity=0.220  Sum_probs=255.3

Q ss_pred             EecccCCCCceEEeec---CCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          328 QTLIEGSSSPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~s---pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+-.||+.+|..++||   |+| ++|++++.|+.-.+-+-++|.=+.+                   +.||.+.|.+...
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l   67 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL   67 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence            4558999999999998   578 5899999999999999999988876                   7799999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~  483 (1092)
                      ..+..+-|+++.|-+-+|||.-+|..+.   .+ .|..-|.+++|+.|.+  +|++|+.++.++|+|++..+ +...+.+
T Consensus        68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence            9999999999999999999999998776   33 5888999999999999  79999999999999998764 4678899


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |.+.|..+.|...  .+.+++.+.|++||+||.+++.....+... .+|+++.+++||++|..+.     .+.|..||..
T Consensus       142 htg~Ir~v~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdak  213 (334)
T KOG0278|consen  142 HTGGIRTVLWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAK  213 (334)
T ss_pred             CCCcceeEEEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence            9999999988653  367888899999999999999988877654 4889999999999988775     3349999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      +-..++.+....    .|.+..++|+...+++|++|..++.||..+|..+.... .++..+|.|+.|+|+|...++|+.|
T Consensus       214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSED  288 (334)
T KOG0278|consen  214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSED  288 (334)
T ss_pred             cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCC
Confidence            999988887654    78999999999999999999999999999999988852 2334679999999999999999999


Q ss_pred             CeEEEEECCCCCee
Q 001358          644 NRIKILETPESNSV  657 (1092)
Q Consensus       644 g~i~iw~~~~~~~~  657 (1092)
                      |+|++|....++..
T Consensus       289 GTirlWQt~~~~~~  302 (334)
T KOG0278|consen  289 GTIRLWQTTPGKTY  302 (334)
T ss_pred             ceEEEEEecCCCch
Confidence            99999998866443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.8e-31  Score=259.93  Aligned_cols=276  Identities=16%  Similarity=0.252  Sum_probs=234.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ...|.|+.+  |...+++|..|++|+|||.++-.+++   .+.||++.|.|+.|.  .+  .+++|+.|.+|+|||+++|
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence            457889988  57789999999999999999987766   688999999999984  45  8999999999999999999


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      +++.++-+|...|..+.|+    ..++++++.|.++.+||+......   ..+.+|...|..+.|+  .+++++++.   
T Consensus       268 e~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg---  338 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG---  338 (499)
T ss_pred             chhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence            9999999999999999983    259999999999999999876643   3567888889888875  458988875   


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                       +.+|++|+..+++.++++.+|.   ..|.|+.+  .++++++|+.|.+|++||+..|.++..+++|..  -|.++.|. 
T Consensus       339 -DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd-  409 (499)
T KOG0281|consen  339 -DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD-  409 (499)
T ss_pred             -CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec-
Confidence             7789999999999999999998   78888776  468999999999999999999999999987754  58999995 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCe---------eeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358          633 NGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                       .+.+++|..||+|++||+..+..         +..+..|.+.|..+.|                        |...+++
T Consensus       410 -~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF------------------------D~fqIvs  464 (499)
T KOG0281|consen  410 -NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF------------------------DEFQIIS  464 (499)
T ss_pred             -CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee------------------------cceEEEe
Confidence             67899999999999999987632         3334456666666655                        4677899


Q ss_pred             eccccccceeceeeccCccc
Q 001358          704 VEAENKSEVEKPLFARPSEC  723 (1092)
Q Consensus       704 ~~~d~~i~~w~~~~~~~~~~  723 (1092)
                      ++.|.+|.+||+....+...
T Consensus       465 ssHddtILiWdFl~~~~~~~  484 (499)
T KOG0281|consen  465 SSHDDTILIWDFLNGPPSAA  484 (499)
T ss_pred             ccCCCeEEEEEcCCCCcccc
Confidence            99999999999876555433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=7.1e-29  Score=304.78  Aligned_cols=294  Identities=14%  Similarity=0.172  Sum_probs=238.6

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CC
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  408 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  408 (1092)
                      +..|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... .          .......+. +...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence            456999999999999998 799999999999999864211000 0          000000122 356899999988 58


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .+||+++.||+|++||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++..+..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999876544   6789999999999997 677  8999999999999999999999888755 57


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-  565 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-  565 (1092)
                      |.++.|.+ +++.+|++|+.||.|++||++... ....+..|...|.++.|. ++.++++++.    ++.|++||+..+ 
T Consensus       620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~  693 (793)
T PLN00181        620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI  693 (793)
T ss_pred             eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence            88888853 467899999999999999998765 455777888899999997 7888988876    667999999743 


Q ss_pred             -----eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC-----------CCCCCCCceEE
Q 001358          566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC  629 (1092)
Q Consensus       566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~  629 (1092)
                           ..+..+.+|.   ..+..++|+|++.++++|+.|+.|++|+......+.....           ..+...|.+++
T Consensus       694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence                 5677888877   8899999999999999999999999999876654433221           12234589999


Q ss_pred             EccCCCEEEEEeCCCeEEEEEC
Q 001358          630 FNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      |+|++..|++++.+|.|+||++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.5e-28  Score=266.13  Aligned_cols=285  Identities=23%  Similarity=0.342  Sum_probs=253.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|..+|.+++|+|++++|++++.+|.|++|++.+++...   .+..|...+..+.|+|+++  .+++++.|+.|++||
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~   79 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD   79 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence            56899999999999999999999999999999999876433   5678999999999999998  799999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++.+..+..|...+.++.|.+.  +.++++++.+|.+++||+.+.+....+..+...+.+++|+|++.++++++.  
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  155 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ--  155 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence            9999899999999999999999654  578888888999999999988888888888889999999999988888763  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        ++.|++||..+++.+..+..+.   ..+.++.|+|+++.+++++.++.+++||+.+++.+..+..+.  ..+.+++|+
T Consensus       156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~  228 (289)
T cd00200         156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS  228 (289)
T ss_pred             --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence              5569999999999888888766   789999999999999999999999999999988888775443  368999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      |++.++++++.+|.+++|+..++.....+..+...+.++.++                      ++++.+++++.|+.++
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~  286 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR  286 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence            998888888889999999999888888888888888888886                      6788899999999999


Q ss_pred             eec
Q 001358          712 VEK  714 (1092)
Q Consensus       712 ~w~  714 (1092)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.2e-30  Score=257.92  Aligned_cols=298  Identities=16%  Similarity=0.228  Sum_probs=259.1

Q ss_pred             cCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-..                 ..|.|..++|
T Consensus       161 ~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~i  222 (459)
T KOG0288|consen  161 DTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGNI  222 (459)
T ss_pred             cccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCCc
Confidence            6678899999999999999999999966 489999999999999988763221                 1277888999


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      +++.|.++++++++++.|+.+++|++...+...   ++.||++.|+++.|.....  .+++|+.|.+|++||+..+.|.+
T Consensus       223 t~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  223 TSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             ceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheec
Confidence            999999999999999999999999999976555   7889999999999998776  59999999999999999999988


Q ss_pred             EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      ++- ....+..|+..    ...+++|-.|++|++||.++.........++ .|+++..+++|..+.+++.    +.++.+
T Consensus       298 t~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~v  367 (459)
T KOG0288|consen  298 TVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKV  367 (459)
T ss_pred             ccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceee
Confidence            764 33445566553    3578999999999999999999888887766 9999999999999999976    667999


Q ss_pred             EeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358          560 WNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      .|.++.+....+...... ....+.+.|+|++.|+++||.||.|+||++.++++...+......+.|.+++|+|.|..++
T Consensus       368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll  447 (459)
T KOG0288|consen  368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL  447 (459)
T ss_pred             eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence            999999998888654321 1347889999999999999999999999999999999998777666799999999999999


Q ss_pred             EEeCCCeEEEEE
Q 001358          639 VIANENRIKILE  650 (1092)
Q Consensus       639 ~~~~dg~i~iw~  650 (1092)
                      +++.++.+.+|.
T Consensus       448 sadk~~~v~lW~  459 (459)
T KOG0288|consen  448 SADKQKAVTLWT  459 (459)
T ss_pred             cccCCcceEecC
Confidence            999999999983

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=6.2e-30  Score=246.68  Aligned_cols=290  Identities=17%  Similarity=0.219  Sum_probs=239.9

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..+.+.+..|||||+++++++-||.|.+|++..++...+-+..+...           ++       -+..+|.|+.||.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~-----------fM-------Mmd~aVlci~FSR  273 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDN-----------FM-------MMDDAVLCISFSR  273 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcc-----------ee-------ecccceEEEeecc
Confidence            45678889999999999999999999999988765533333222111           11       1678999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeE
Q 001358          813 NDAYLFSAS-GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT  890 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~  890 (1092)
                      |...+|+|+ ||.|++|.+.+|.+++.|. +|...|+|+.||. |+..+.+++.|.+++|.-+.+|++++.++||++-|+
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence            999999998 8999999999999999997 8999999999999 888999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC--EEEEEeCCcEEEEEcCCce
Q 001358          891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHETHLAIYEAEELT  968 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d~~v~lwd~~~~~  968 (1092)
                      ...|++||.++++++.||+|++|+.++.+     ++.++.... ...+|.++-.-|.+.  ++++...++++|.++. |+
T Consensus       353 ~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ  425 (508)
T KOG0275|consen  353 EATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ  425 (508)
T ss_pred             ceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence            99999999999999999999999999966     333332211 113578888777653  4444567889999985 77


Q ss_pred             eeeeeccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001358          969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus       969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
                      .++.+..|.  .+.-.+.+.||.|.++...+.|+.++-+.+.+|.+...+..+.-.+          +.++-|| ..+.+
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv----------IGl~HHP-HqNll  494 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV----------IGLTHHP-HQNLL  494 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc----------cccccCc-ccchh
Confidence            787766554  5666778899999999999999999999999999998887444222          3477888 46899


Q ss_pred             EEEeCCCcEEEEe
Q 001358         1047 AVGLTNGEVYVIE 1059 (1092)
Q Consensus      1047 ~~~~~dg~v~~w~ 1059 (1092)
                      |+=+.||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=7.4e-29  Score=254.24  Aligned_cols=287  Identities=19%  Similarity=0.234  Sum_probs=243.6

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ..+.|. .|++++|||...+=+|+.+. -.+.||+..+...+++                   +..-...|.++.|-.||
T Consensus        22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG   80 (487)
T KOG0310|consen   22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG   80 (487)
T ss_pred             cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence            334555 99999999966544454433 6799999988776654                   23355789999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ++||+|...|.|+|+|+.+...++   .+.+|+.+|..+.|+|++.+ .+++|+.|+.+++||+.+......+.+|++.|
T Consensus        81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV  156 (487)
T KOG0310|consen   81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV  156 (487)
T ss_pred             eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence            999999999999999977654455   57899999999999999887 89999999999999999999877999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-E
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I  567 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~  567 (1092)
                      .+.++++. ++.+++||+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++.     +.+++||+.+|. .
T Consensus       157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL  230 (487)
T ss_pred             EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence            99999876 4579999999999999999998665555668889999999999999999874     459999999554 4


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      +..+..|.   ..|+|+.+..++..|++|+-|+.|++||+.+.+.+..+...+   +|.+++.+|+++.+++|..||.+.
T Consensus       231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceee
Confidence            44444466   899999999999999999999999999999999999988764   489999999999999999999988


Q ss_pred             EEECC
Q 001358          648 ILETP  652 (1092)
Q Consensus       648 iw~~~  652 (1092)
                      +-+..
T Consensus       305 ~rr~~  309 (487)
T KOG0310|consen  305 IRRRE  309 (487)
T ss_pred             eehhh
Confidence            76433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.7e-28  Score=234.40  Aligned_cols=316  Identities=17%  Similarity=0.205  Sum_probs=244.7

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ......|..|+..+.+.+|||||. |+|+|+.|.+|+|.|++.--.. ...++..=+.......+  ..+-.|.+.|+++
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvI--RTlYDH~devn~l  178 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVI--RTLYDHVDEVNDL  178 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceE--eehhhccCcccce
Confidence            444567889999999999999998 8999999999999999721000 00000000111111111  2377899999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001358          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  481 (1092)
                      .|+|....|++|+.|++|+++|...-...+....+ ....+|.++.|+|.|.  +|+.|....++++||+++-++...- 
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence            99999999999999999999999765433332222 3456899999999999  7888999999999999998886543 


Q ss_pred             --ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CC-CceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PG-LGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                        .+|.+.|+++.++  +.+.+.++++.||.|++||--+.+++.++.. |+ ..|.+..|..+|+++++.+.    +..+
T Consensus       256 Pd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v  329 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV  329 (430)
T ss_pred             cccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence              4699999999985  4668999999999999999888888776543 33 47899999999999999875    7789


Q ss_pred             EEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          558 VEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++|.+.+++.+..+.|.....  .--+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..+.-||.+
T Consensus       330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~  408 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE  408 (430)
T ss_pred             eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence            999999999999998763111  1123445777777777744 457899999999887766654 345678999999999


Q ss_pred             CEEEEEeCCCeEEEEECC
Q 001358          635 TLLAVIANENRIKILETP  652 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~  652 (1092)
                      .-+++++.|..+++|-..
T Consensus       409 p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  409 PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             Cceeeecccceeeeeeec
Confidence            999999999999999644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.6e-27  Score=292.90  Aligned_cols=322  Identities=14%  Similarity=0.176  Sum_probs=247.6

Q ss_pred             cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----CCc
Q 001358          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA  431 (1092)
Q Consensus       356 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~  431 (1092)
                      +|.+++|+..+-......              +..-+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+.    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            567888887765433211              11114569999999999999999999999999999998642    111


Q ss_pred             c-ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCe
Q 001358          432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK  510 (1092)
Q Consensus       432 ~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~  510 (1092)
                      . ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.||+
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence            1 112233 3467999999986433 7999999999999999999999999999999999999753 5679999999999


Q ss_pred             EEEEEcCCCCceEEecCCCCceEEEEEe-cCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcC
Q 001358          511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      |++||+.+......+..+ ..+.++.|+ ++|.++++++.    ++.|++||++++. .+..+.+|.   ..|.++.|. 
T Consensus       600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~-  670 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV-  670 (793)
T ss_pred             EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence            999999988777766644 578899995 57899999876    6679999998765 456677776   889999997 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC------ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358          589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       589 ~~~~l~~~s~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      ++..+++++.|++|++||+..+      ..+..+..|.  ..+..++|+|++.+|++|+.|+.+++|+............
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~  748 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF  748 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence            6789999999999999999743      4566666553  4578999999999999999999999999765432221110


Q ss_pred             c-cccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEE
Q 001358          663 L-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  741 (1092)
Q Consensus       663 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~  741 (1092)
                      . ...+                                                        ..  .....+...|.+++
T Consensus       749 ~~~~~~--------------------------------------------------------~~--~~~~~~~~~V~~v~  770 (793)
T PLN00181        749 KTIDPV--------------------------------------------------------SG--LEVDDASQFISSVC  770 (793)
T ss_pred             ccCCcc--------------------------------------------------------cc--cccCCCCcEEEEEE
Confidence            0 0000                                                        00  00012456799999


Q ss_pred             EecCCcEEEEeecCCeeEEeee
Q 001358          742 YNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       742 ~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                      |++++..+++++.+|.|++|++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999985

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.7e-28  Score=276.31  Aligned_cols=307  Identities=19%  Similarity=0.246  Sum_probs=250.7

Q ss_pred             cCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      .+...|..++.+|||. .+|+|+  .|+.++||+.+.--..    .+.+|..   .+-....+..|.+.|+|+.|||||+
T Consensus        11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~   82 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS   82 (942)
T ss_pred             cCCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence            3455789999999998 589999  8999999997642100    0111111   0111223667999999999999999


Q ss_pred             EEEEEeCCCEEEEEEccC---C------------CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~---~------------~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      |||+|++|+.|.||+...   +            +..+....+.+|.+.|..++|+|++.  +|++++.|++|.|||..+
T Consensus        83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t  160 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT  160 (942)
T ss_pred             eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence            999999999999999883   1            11234557889999999999999999  899999999999999999


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC------CceEEEEEecCCCEEEEEe
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~i~~~~~s~dg~~l~~~~  548 (1092)
                      .+.+..+.+|...|..+.|  +|-|++|++-+.|++|++|+...-+....+..+-      .-+..+.|||||++|++..
T Consensus       161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            9999999999999999999  5567999999999999999977755555544432      2478899999999999988


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CC------------EEEEEeCCCeEEEEECCCCc
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      .-+.+...+.|.+..+.+.-..+.||.   .++.++.|+|.     .+            .+++|+.|++|.||.....+
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R  315 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR  315 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence            777778889999998888889999999   89999999983     11            46779999999999998877


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ++.....-.. ..|..++|+|||..|++++.||+|.++.....
T Consensus       316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            7765543222 46899999999999999999999999998754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.6e-28  Score=226.52  Aligned_cols=279  Identities=16%  Similarity=0.236  Sum_probs=242.7

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      +.+++|...|.+|+|+.||+ -||+|+.|+++.+|+++..+.+....                 ..+|.+.|..++|+| 
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~~~-----------------~~gh~~svdql~w~~~   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKELV-----------------YRGHTDSVDQLCWDPK   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhhhc-----------------ccCCCcchhhheeCCC
Confidence            66789999999999999998 59999999999999999885554322                 678999999999998 


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ...++++++.|.+|++||...+++....   .. .+.=..+.|+|+|+  +++.++.|..|...|.++.+.+...+ ...
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~  148 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTARI---ET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF  148 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEEe---ec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence            6789999999999999999999876633   22 23334578999999  79999999999999999888776654 445


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .++.++|+.  ++.+++.....|+|.|..+...+++..+..|...+.++.|+|+|+++++|+.    +..+.+||+..--
T Consensus       149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi  222 (313)
T KOG1407|consen  149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI  222 (313)
T ss_pred             eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence            677788873  4457777777899999999999999999999999999999999999999987    6679999999999


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      +++.+..+.   -+|..+.|+-+|++|++||+|..|-|=++++|..+..++..+.   ...|+|+|...+||.+++|
T Consensus       223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence            999999888   8999999999999999999999999999999999999987654   6899999999999988775

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=1.4e-27  Score=225.35  Aligned_cols=287  Identities=10%  Similarity=0.101  Sum_probs=239.0

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      .|+||..+++.+.|+.+|. ||.+++.|.++.||-..+|+.+.+                   +.||++.|.|+..+.+.
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s   64 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS   64 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence            4789999999999999999 899999999999999999999987                   88999999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-----CCCcEEEEECC-------CCc
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS  476 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~-------~~~  476 (1092)
                      +++++|+.|.++++||+++|+++..   + ....+|..+.|+++|.  +++.+.     ..+.|.++|++       ..+
T Consensus        65 ~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   65 KHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             ceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            9999999999999999999987763   3 3456899999999999  343332     34679999987       455


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      +...+..+...++.+.|.+.  +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++.    +.
T Consensus       139 p~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt  212 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT  212 (327)
T ss_pred             ceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence            67888888899999999654  4799999999999999999976655 45678889999999999999999986    56


Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE--------------EECCCCceEEEEeCCCC
Q 001358          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI--------------WDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i--------------wd~~~~~~~~~~~~~~~  621 (1092)
                      +-.+||..+-+.++++....    +|++.+++|...+++.|+.....-+              |++-..+.+..+..  +
T Consensus       213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG--H  286 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG--H  286 (327)
T ss_pred             cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc--c
Confidence            68999999999999998754    9999999999888888764332222              22222233344444  4


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          622 LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ..+|++++|+|+|+..++|+.||.|++.....
T Consensus       287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            56799999999999999999999999986553

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=4.4e-29  Score=232.82  Aligned_cols=286  Identities=14%  Similarity=0.183  Sum_probs=254.0

Q ss_pred             ecCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358          392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      ..||+.+|..++|||   +|-+|++++.|+.=.+-+-++|.-+.   ++.||.+.|++.....+..  ..++++.|-+.+
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak   84 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK   84 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence            779999999999996   89999999999988887878886665   8899999999999998877  789999999999


Q ss_pred             EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEE
Q 001358          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      |||.-+|..+++|. |...|.+++|  +.|..+|++|+.++.+|++|++..+. ...+.+|.+.|..+.|....+.+++.
T Consensus        85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            99999999999996 8999999999  45778999999999999999987654 55788999999999999999999987


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||.+++..++++...    .+|.++.++++|.++.+ ...+.|.+||..+..++.....+..   |.+
T Consensus       162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~n---V~S  229 (334)
T KOG0278|consen  162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCN---VES  229 (334)
T ss_pred             cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccc---ccc
Confidence            54    667999999999999998864    48999999999875544 4567899999999999998887644   788


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeec-ccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1092)
                      ..++|+...+++|+.|..++.||..++..+... ++|.++|.|+.|+                      |||...++|+.
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE  287 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE  287 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence            999999999999999999999999999998885 8999999999996                      78899999999


Q ss_pred             ccccceeceeecc
Q 001358          707 ENKSEVEKPLFAR  719 (1092)
Q Consensus       707 d~~i~~w~~~~~~  719 (1092)
                      ||+||+|.....+
T Consensus       288 DGTirlWQt~~~~  300 (334)
T KOG0278|consen  288 DGTIRLWQTTPGK  300 (334)
T ss_pred             CceEEEEEecCCC
Confidence            9999999976443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.7e-26  Score=225.00  Aligned_cols=287  Identities=16%  Similarity=0.240  Sum_probs=238.0

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      +..-.+.|.++.|+++|. ++++++.|.+++|||..+|+.+++                   +..+.-.|..+.|.....
T Consensus        10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~   69 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN   69 (311)
T ss_pred             cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence            344566999999999998 577788899999999999998876                   455677888999988888


Q ss_pred             EEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       410 ~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .++.++.  |.+|+.-++.+.+.++   -+.||...|++++.+|-+.  .+++++.|++|++||++..++...+.....+
T Consensus        70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p  144 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP  144 (311)
T ss_pred             eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence            7777776  7899999999997776   7899999999999999998  8999999999999999998888877655555


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEec---CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +.  +|  ++.|-++|++...+.|++||++...  +-.++.   ......+.+.|||||++++.+..    .+.+++.|.
T Consensus       145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA  216 (311)
T KOG1446|consen  145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA  216 (311)
T ss_pred             ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence            54  45  5677888888888899999998752  333333   33557899999999999998865    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      -+|..+.++.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ....+.++.|+|.-.++++++.
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecCc
Confidence            999999999998844444467889999999999999999999999999999999875 3356889999998777776654


Q ss_pred             CCeEEEEECC
Q 001358          643 ENRIKILETP  652 (1092)
Q Consensus       643 dg~i~iw~~~  652 (1092)
                        .+.+|-..
T Consensus       296 --~l~fw~p~  303 (311)
T KOG1446|consen  296 --NLVFWLPD  303 (311)
T ss_pred             --eEEEEecc
Confidence              67777544

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=3.6e-27  Score=222.65  Aligned_cols=286  Identities=13%  Similarity=0.162  Sum_probs=240.1

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .+.||+.+++.+.++.+|.+|.+++.|.+..+|--.+|+.+.   ++.||++.|+|++..-+.+  .+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            488999999999999999999999999999999998887666   8899999999999999999  89999999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-----CCeEEEEEcC-------CCCceEEecCCCCceEEEEEe
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS  538 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~s  538 (1092)
                      |+++|+++..++ ...+|..+.|++  +|.+++....     .+.|.++|++       ..++...+..+...++.+.|+
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            999999999997 667899999965  4455555433     3569999987       445577788888999999999


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          539 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      |-+++|++|..    ++.|.+||.++|.. +..-..|.   ..|+.++++++..++++++.|.+-++||..+-+.++++.
T Consensus       157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            99999999976    56699999999854 44445555   799999999999999999999999999999999999987


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC--------------CCCeeeecccccccceeeeecCCcccccccc
Q 001358          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP--------------ESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      ..   .+|++.+++|-..+++.|+.....-+=...              ..+.+...++|-++|++++++          
T Consensus       230 te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh----------  296 (327)
T KOG0643|consen  230 TE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH----------  296 (327)
T ss_pred             ec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence            65   358999999988888877654333222211              224566778999999999996          


Q ss_pred             cCCceeecCCCCCCcccceeeccccccceecee
Q 001358          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                                  |+|+..++|+.||.||+..++
T Consensus       297 ------------PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 ------------PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ------------CCCcccccCCCCceEEEEEec
Confidence                        789999999999999996554

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6e-28  Score=265.21  Aligned_cols=310  Identities=16%  Similarity=0.201  Sum_probs=225.5

Q ss_pred             ceeEecc-cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~-~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+......   -+. .|... .   +.. .+.+..+.
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~---~~~-~~~~~-~---~~~-~s~~~p~~  326 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAE---GDS-SCMYF-E---YNA-NSQIEPST  326 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccc---ccc-chhhh-h---hhh-ccccCccc
Confidence            4456677 9999999999999999 69999999999999998754422100   000 00000 0   000 00011111


Q ss_pred             ECC---CCC--EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          404 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       404 ~sp---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      -++   .++  ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++   +|++++.|++|++|++....|+
T Consensus       327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL  403 (712)
T KOG0283|consen  327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL  403 (712)
T ss_pred             cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence            111   011  11112222222222211111123344788999999999999876   6999999999999999999999


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      ..|. |...|+|++|+|.. .+++++|+-||.+|+|++...+...-.. -..-|++++|.|||++.++|+.    +|.++
T Consensus       404 ~~F~-HndfVTcVaFnPvD-DryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~  476 (712)
T KOG0283|consen  404 KVFS-HNDFVTCVAFNPVD-DRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCR  476 (712)
T ss_pred             eEEe-cCCeeEEEEecccC-CCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEE
Confidence            9996 99999999999984 5799999999999999997755544443 3468999999999999999987    66799


Q ss_pred             EEeCCCCeEEEEEeeccc-----cCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          559 EWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +|+....+....+.-+..     ....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence            999988777665543321     12379999999754 358899999999999999999998888765555556789999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC
Q 001358          633 NGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ||++++++++|..|++|+....
T Consensus       557 Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCEEEEeecCceEEEEeCCCC
Confidence            9999999999999999998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.3e-27  Score=235.20  Aligned_cols=282  Identities=20%  Similarity=0.358  Sum_probs=233.7

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---C
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G  408 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g  408 (1092)
                      -|.+.|.+|...  ++ .+.+|+.||.++|||.. |+....                   +.||.++|.+++|--.   .
T Consensus       103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~  159 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS  159 (423)
T ss_pred             cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence            478899999998  45 58999999999999976 454443                   7899999998888543   3


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--------------
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--------------  473 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--------------  473 (1092)
                      ..+++++.|.++++|.++.++... ......||...|.+++..++|.  .+++|+.|.+|.||+.+              
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence            469999999999999998876532 2223459999999999999999  89999999999999932              


Q ss_pred             -----------CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCC
Q 001358          474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       474 -----------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~  542 (1092)
                                 ++.++-++.||..+|.++.|..   ...+.+++.|.+|+.||+.+++....+... ....++..+|..+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSK  313 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccc
Confidence                       1234567889999999999965   358999999999999999999887776644 4788999999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCe---EEEEEeeccccCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCc-eEEEEe
Q 001358          543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTID  617 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~s~dg~i~iwd~~~~~-~~~~~~  617 (1092)
                      +|++++.    +..+++||++++.   ....+.+|.   +.|.++.|+|...+ |++|+.|+++++||+++.+ ++..+.
T Consensus       314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            9999987    6679999998764   356778887   89999999998654 5679999999999999877 888888


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .|.  ..|.++.|+. +.++++|+.|.+|+|+...
T Consensus       387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            774  4588899875 7789999999999998654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.8e-26  Score=209.61  Aligned_cols=308  Identities=18%  Similarity=0.224  Sum_probs=237.7

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceee-eeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .++.+|... ..|.+|+|+|.|. |.|+|+..++.+|-....-..++. .+...+   .....++  .-+.|.+.|.|.+
T Consensus        24 ~~i~~l~ds-qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~---pp~v~~k--r~khhkgsiyc~~   96 (350)
T KOG0641|consen   24 EAINILEDS-QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQ---PPSVLCK--RNKHHKGSIYCTA   96 (350)
T ss_pred             EEEEEecch-hheeeEEecCCCc-eEEeccCCceEEEEccccccCcccccccccC---CCeEEee--eccccCccEEEEE
Confidence            556677664 4999999999998 899999999998875433211110 000000   0001111  2456899999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccC--CCCccceEEecccccceeEEEeeCC---CCcEEEEEEe-CCCcEEEEECCCCce
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGSR  477 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d---~~~l~l~s~~-~d~~i~vwd~~~~~~  477 (1092)
                      |||+|++||+|+.|.+|++.-.+.  ......-.++.-|.+.|..++|..+   +.. +|++++ .|..|++-|-.+|+.
T Consensus        97 ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~  175 (350)
T KOG0641|consen   97 WSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQG  175 (350)
T ss_pred             ecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCc
Confidence            999999999999999999876653  3333444467889999999999654   222 566654 578888999999999


Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C-----CCceEEEEEecCCCEEEEEecC
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P-----GLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .+.+.+|.+.|.++--   =++.++++|+.|.+|++||++-..++.++..  +     ...|.+++..|.|++|+++.. 
T Consensus       176 ~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-  251 (350)
T KOG0641|consen  176 FHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-  251 (350)
T ss_pred             ceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-
Confidence            9999999999988742   1567999999999999999998877765533  1     246899999999999999876 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCCc
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENP  626 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~  626 (1092)
                         +....+||++.+..++.+..|.   ..|.++.|+|...++++++.|..|++-|+...    -.+.....|  ...+.
T Consensus       252 ---dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i  323 (350)
T KOG0641|consen  252 ---DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAI  323 (350)
T ss_pred             ---CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceE
Confidence               5568999999999999999888   89999999999999999999999999998642    122233333  34467


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          627 RICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .+.|+|..--+++.+.|.++.+|.+.
T Consensus       324 ~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  324 QCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEecCccceeeeccCcceEEEeccC
Confidence            88999999889999999999999764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=9.6e-28  Score=230.68  Aligned_cols=307  Identities=13%  Similarity=0.196  Sum_probs=237.7

Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ...+.+.+|++||.++|+|+.|.+|+|+|++..-....   +..                                   +
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m  153 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M  153 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence            45689999999999999999999999999873210000   000                                   0


Q ss_pred             eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      ..+              .+.+..++....-.|...|+.+.|.|....|++++.|+++++||+.......        ..+
T Consensus       154 ~~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K  211 (430)
T KOG0640|consen  154 ISG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK  211 (430)
T ss_pred             ccC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence            000              0001111111112388999999999999999999999999999987643200        011


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEe---cCCCCCeEEEEEcCCCCC
Q 001358          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNN  857 (1092)
Q Consensus       782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~  857 (1092)
                      ++                ....+|.++.|+|.|.+|++|.| .++++||+++.++...-   ..|.+.|+++.+++ .++
T Consensus       212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~  274 (430)
T KOG0640|consen  212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS  274 (430)
T ss_pred             Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence            11                15678999999999999999997 78999999999887654   35788999999999 899


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeEeec-cccC-CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358          858 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~-~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      +.++|+.||.|+|||--+++|+.++. +|.+ .|.+..|..+|+++.+.|.|..+++|.+.++.......=....+... 
T Consensus       275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~-  353 (430)
T KOG0640|consen  275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK-  353 (430)
T ss_pred             EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh-
Confidence            99999999999999999999998886 4654 78999999999999999999999999999976333221111112111 


Q ss_pred             CCCceEEEEecCCCEEEEE--eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          936 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                        --+...|+....+++.-  ..+.+.-||..++..+..+..+|.+.+..+.-||.+.-++||+.|..+|+|--.
T Consensus       354 --~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  354 --HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             --hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence              23566788888888874  446799999999999998899999999999999999999999999999999643

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=2.8e-26  Score=258.21  Aligned_cols=289  Identities=12%  Similarity=0.118  Sum_probs=224.5

Q ss_pred             CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEE
Q 001358          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  411 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l  411 (1092)
                      |-..|.....++|+. .+++++.+..+..|+...|..+.      +.............+.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCC-CcEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            445788888899976 36677777888889877664321      11111111111234789999999999999 89999


Q ss_pred             EEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      |+|+.|++|++||+.++..    ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999986532    1234478899999999999998643 7999999999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      |.+++|++  ++.+|++++.||+|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            99999965  6789999999999999999998888787777654 45678999998988887665567889999998754


Q ss_pred             -EEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       567 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                       .......+.  ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.-
T Consensus       249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk~  315 (493)
T PTZ00421        249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPKW  315 (493)
T ss_pred             CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEecccc
Confidence             333333222  24566678999999999887 59999999999998877665432 2356788888843

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.2e-26  Score=260.70  Aligned_cols=284  Identities=17%  Similarity=0.284  Sum_probs=248.3

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .|...+.|..|. ++  .+++|+.|++|++||..++..+..                  -+.||.+.|.+++|..-+.+|
T Consensus       206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l  264 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL  264 (537)
T ss_pred             cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence            356688999999 55  489999999999999999987753                  177999999999999889999


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      ++|+.|.++++||..+|++..   .+.+|...|.++...+.    .+++|+.|.+|++|++.++.+++.+.+|.++|+++
T Consensus       265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999998776   78899999999987553    68899999999999999999999999999999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC-eEEEE
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT  570 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~  570 (1092)
                      ..+    +.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++.    +..|++||+.++ +++.+
T Consensus       338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence            873    569999999999999999999999999999999999987766 88999987    567999999999 99999


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +.+|.   .-+..+.  ..++++++++.|++|++||..+++++..+..+ +...|..+++.  ...+++++.+|.+++||
T Consensus       409 l~~h~---~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  409 LQGHT---SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             hcCCc---ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99988   6665444  45689999999999999999999999999874 23346666655  47899999999999999


Q ss_pred             CCCCCeeeec
Q 001358          651 TPESNSVDAA  660 (1092)
Q Consensus       651 ~~~~~~~~~~  660 (1092)
                      ++++.....+
T Consensus       481 l~~~~~~~~l  490 (537)
T KOG0274|consen  481 LRSGTLIRTL  490 (537)
T ss_pred             cccCchhhhh
Confidence            9998777655

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=3.8e-27  Score=242.01  Aligned_cols=309  Identities=18%  Similarity=0.232  Sum_probs=242.7

Q ss_pred             ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      +..+|..+-..|++|+..|.++++.|.|.+ +++|+.|.+|++||...-..... .|             ..+.......
T Consensus       152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~f-------------r~l~P~E~h~  216 (641)
T KOG0772|consen  152 IKLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SF-------------RQLQPCETHQ  216 (641)
T ss_pred             hhcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hh-------------hccCcccccc
Confidence            345677888899999999999999999985 89999999999999986543321 11             1224456678


Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCC---------ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      |.+++||+.|..|++.+.....+|+|-...+.         +.-...-+||...++|.+|+|+.+. .++|++.||+++|
T Consensus       217 i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRi  295 (641)
T KOG0772|consen  217 INSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRI  295 (641)
T ss_pred             cceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEE
Confidence            99999999999999998888999999775433         2223345689999999999999887 7999999999999


Q ss_pred             EECCCCc-eeEEEe-----cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCC--ceEEEEEe
Q 001358          470 WDAVTGS-RTYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYS  538 (1092)
Q Consensus       470 wd~~~~~-~~~~~~-----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~--~i~~~~~s  538 (1092)
                      ||+..-+ .++.++     +..-++++++|  ++|+.+|++|+.||.|.+|+........   .-..|..  .|++++||
T Consensus       296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS  373 (641)
T ss_pred             EecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence            9988654 333332     23346788888  5578899999999999999976543322   2334444  89999999


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEe------CCCeEEEEECCCCc
Q 001358          539 ANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQ  611 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s------~dg~i~iwd~~~~~  611 (1092)
                      +||++|++-+.    +..+++||++.. +++....+.. ...+-+.++|+|+.+.|++|+      ..|++++||..+..
T Consensus       374 ~dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d  448 (641)
T KOG0772|consen  374 YDGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD  448 (641)
T ss_pred             cccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence            99999998776    667999999865 4444444433 224567789999999999975      55789999999999


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .+..+...  ...|..+.|+|.-+.+++++.||.+++|--.
T Consensus       449 ~v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  449 TVYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             eEEEecCC--CceEEEEeecchhhheeeecCCCceEEEECc
Confidence            99998876  3468899999999999999999999997544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.4e-26  Score=260.97  Aligned_cols=305  Identities=17%  Similarity=0.234  Sum_probs=238.0

Q ss_pred             ccccEEEEEEecCCcEEEEee--cCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358          733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      +...|.++.++|+|..+++++  .||.+++|+.+.-..          ....++..-...+.+.    ..|.+.|.|+.|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~m----~~h~~sv~CVR~   77 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCTM----DDHDGSVNCVRF   77 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhheee----ccccCceeEEEE
Confidence            455689999999999999999  899999998654211          1111222111111111    149999999999


Q ss_pred             ecCCCEEEEEeC-CeEEEEEcCC------------------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358          811 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       811 s~dg~~l~~~sd-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      +|||++||+|+| +.|.||+...                  ++.+..+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence            999999999995 6789998762                  346778999999999999999 89999999999999999


Q ss_pred             EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001358          872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      +..+.+.+.++++|.+.|..+.|.|-|++|||-+.|++|+||++.+....  +.+..+..+.........+.|||||.+|
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~T~f~RlSWSPDG~~l  234 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLTTFFLRLSWSPDGHHL  234 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--EeeccchhhCCCcceeeecccCCCcCee
Confidence            99999999999999999999999999999999999999999997764322  2444444444444568899999999999


Q ss_pred             EE--EeC---CcEEEEEcCCceeeeeeccCCCcCEEEEEEec--------CC-----C----EEEEEeCCCcEEEEECCC
Q 001358          952 LL--VHE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       952 a~--~~d---~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~s~Dg~i~vwd~~~ 1009 (1092)
                      ++  +.+   .++.|.+-.+.+.-.. +.||.+++.+++|+|        +|     .    .+|+||.|++|.||....
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            98  322   3588888766665554 668999999999998        11     1    588999999999999876


Q ss_pred             CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358         1010 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1010 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      .+.+..+.       ...+.  ..++++|+| ||..|.+++.||+|.+..+.+.+.
T Consensus       314 ~RPl~vi~-------~lf~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  314 PRPLFVIH-------NLFNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CCchhhhh-------hhhcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHh
Confidence            66653322       11112  235889999 589999999999999999976553

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.4e-26  Score=235.97  Aligned_cols=282  Identities=15%  Similarity=0.214  Sum_probs=229.8

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..+.|.+++|+|...+=++.+..-.+.+|+......                      ...  +.  .....+.++.|..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~----------------------~k~--~s--rFk~~v~s~~fR~   78 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV----------------------RKT--FS--RFKDVVYSVDFRS   78 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhh----------------------hhh--HH--hhccceeEEEeec
Confidence            456899999999776656666666677776432210                      110  00  1456789999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEE
Q 001358          813 NDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       813 dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      ||+++|+|++ |.|+|||+++...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            9999999985 999999988777788999999999999999999999999999999999999999887789999999999


Q ss_pred             EEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee
Q 001358          892 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  970 (1092)
Q Consensus       892 l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~  970 (1092)
                      .+|+|- +.+++|||.||.|++||+....   .+......+     .+|..+.|-|.|.++|++..+.|++||+.+|...
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL  230 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence            999995 5689999999999999998743   122222222     2699999999999999999999999999966554


Q ss_pred             eeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001358          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1050 (1092)
                      ......|...|+|+++..|++.|++++-|+.|++||+.+.+.+..+...         ++|  ++++.+| |++.++.|.
T Consensus       231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~pv--Lsiavs~-dd~t~viGm  298 (487)
T KOG0310|consen  231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GPV--LSIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cce--eeEEecC-CCceEEEec
Confidence            4435559999999999999999999999999999999999999887621         123  4667777 468999999


Q ss_pred             CCCcEEEEec
Q 001358         1051 TNGEVYVIEP 1060 (1092)
Q Consensus      1051 ~dg~v~~w~~ 1060 (1092)
                      .||.+-+-+.
T Consensus       299 snGlv~~rr~  308 (487)
T KOG0310|consen  299 SNGLVSIRRR  308 (487)
T ss_pred             ccceeeeehh
Confidence            9999877744

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.5e-26  Score=245.73  Aligned_cols=279  Identities=18%  Similarity=0.267  Sum_probs=240.4

Q ss_pred             ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      ..-+.||..+  +||+|.. ..|.+|+..++.....                   ..-++..|+++.|+++|++||+|..
T Consensus       180 ~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~  237 (484)
T KOG0305|consen  180 LNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTS  237 (484)
T ss_pred             hhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeec
Confidence            4467888655  5777653 6899999999986543                   2224789999999999999999999


Q ss_pred             CCEEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcceEEEeec
Q 001358          417 KHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPH  494 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~  494 (1092)
                      +|.|.|||..+.+.++   .+.+ |...|.+++|+  +.  .+.+|+.|+.|..+|+...+.... +.+|...|..+.|+
T Consensus       238 ~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws  310 (484)
T KOG0305|consen  238 DGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS  310 (484)
T ss_pred             CCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence            9999999999877666   5667 99999999998  34  799999999999999998876655 88999999999994


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1092)
                        +|+.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|+.  ..|++|++||..+|..+.....
T Consensus       311 --~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdt  386 (484)
T KOG0305|consen  311 --PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDT  386 (484)
T ss_pred             --CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEeccccc
Confidence              5778999999999999999999999999999999999999999 4556777765  5588999999999999888765


Q ss_pred             ccccCCceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          574 LQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       574 ~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      .    ..|..+.|++..+.+++  |..++.|.||+..+.+.+..+.+|.  ..|..++++|||..+++|+.|.++++|++
T Consensus       387 g----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  387 G----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             C----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccc
Confidence            3    58999999999887777  5577899999999999999888774  46999999999999999999999999998


Q ss_pred             CCC
Q 001358          652 PES  654 (1092)
Q Consensus       652 ~~~  654 (1092)
                      -+.
T Consensus       461 f~~  463 (484)
T KOG0305|consen  461 FDE  463 (484)
T ss_pred             cCC
Confidence            764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.2e-25  Score=214.76  Aligned_cols=273  Identities=16%  Similarity=0.187  Sum_probs=229.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC--CCcEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV  469 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~v  469 (1092)
                      +..-.+.|.++.|+++|.+|++++.|.+++|||..+|++++   ++..+...|..++|.....  .++.++.  |.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence            44567899999999999999999999999999999998776   5666777899999988887  4555555  889999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      -++.+.+.++-|.||...|++++.+|.+  ..+++++.|++|++||++..++...+.....++  ++|.|.|-.+|++..
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG  160 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence            9999999999999999999999997765  689999999999999999888877776665555  789999999998864


Q ss_pred             CCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC-c
Q 001358          550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P  626 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~  626 (1092)
                          ...|.+||+++-  .+..++.-..........+.|+|+|++++.++..+.+++.|.-+|..+.++..+.....+ .
T Consensus       161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence                337999999854  334444433222367899999999999999999999999999999999998876543322 4


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc-ccccceeeeecCCcc
Q 001358          627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPIST  677 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~  677 (1092)
                      ..+|+||++++++|+.||+|.+|+++++..+..+++ +..++.++.|+|...
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~  288 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA  288 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee
Confidence            678999999999999999999999999999999988 578888888886433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=3e-26  Score=227.28  Aligned_cols=280  Identities=15%  Similarity=0.194  Sum_probs=234.2

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCC-cEEEEEEeCCCcEEEEEC
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~  472 (1092)
                      -|.+.|.++...  ++.|++|+.||.+++||..+.    ....+.||.++|.+++|.-... .-.+++++.|.++++|-+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            388899999888  889999999999999999874    2336789999999888853322 115999999999999998


Q ss_pred             CCCce----eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-------------------------CCCceE
Q 001358          473 VTGSR----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV  523 (1092)
Q Consensus       473 ~~~~~----~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------------------------~~~~~~  523 (1092)
                      +.++.    ++...||...|.++..  .+++..+++|+.|.+|++|+..                         ...+..
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            87754    3444699999999987  5577899999999999999831                         123455


Q ss_pred             EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001358          524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~  603 (1092)
                      .+.+|..+|.++.|++ ...+++++.    |.+|+.||+.++..+..+.+.    ..+.++..+|..+.|++|+.|..++
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence            6788999999999988 667778876    788999999999999888874    4899999999999999999999999


Q ss_pred             EEECCCCce---EEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCC-eeeecccccccceeeeecCCccc
Q 001358          604 IWDMNKVQL---LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       604 iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                      +||.+++.-   ..++.+  |...|.++.|+| +..+|++++.|+++++||+++.. ++..+.+|.+.|.++.++     
T Consensus       326 l~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-----  398 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-----  398 (423)
T ss_pred             ecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence            999987642   344444  455899999999 55678999999999999999886 899999999999999997     


Q ss_pred             ccccccCCceeecCCCCCCcccceeeccccccceece
Q 001358          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~  715 (1092)
                                        ++..+++|+.|.+++++..
T Consensus       399 ------------------~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  399 ------------------EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ------------------CCceEEeccCcceEEEecc
Confidence                              5778999999999999874

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8e-26  Score=217.63  Aligned_cols=276  Identities=18%  Similarity=0.236  Sum_probs=220.3

Q ss_pred             CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC-CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      ..+.|.+++|||....+++.||.|++||+|+++.. ....                  .....|.++|.+++|+.||..+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV   87 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV   87 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence            46799999999966668889999999999999873 3332                  1255699999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      ++|+.|+.+++||+.+++..    .+..|.++|..+.|-+...+..|+|||.|++|+.||.+...++.++. ..+.++++
T Consensus        88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~  162 (347)
T KOG0647|consen   88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA  162 (347)
T ss_pred             EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence            99999999999999998533    46789999999999887766689999999999999999999998886 55667777


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-c-CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC--eE
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AI  567 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~  567 (1092)
                      ..    -..+++.+..++.|.+|+++........ . .-.-.+++++...|....+.|+.    +|.+.+..+..+  +.
T Consensus       163 Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~  234 (347)
T KOG0647|consen  163 DV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD  234 (347)
T ss_pred             hc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence            54    2258999999999999999765543322 1 22336889999998888888876    455666666554  44


Q ss_pred             EEEEeecccc------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358          568 KRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       568 ~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      --+|+.|...      ...|++++|+|....|++++.||++.+||-.....+.+.+.+  ..+|.+++|+.+|.++|-+.
T Consensus       235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEEe
Confidence            5567777621      235788999999999999999999999998877777666544  34699999999999887654

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=7.9e-25  Score=246.73  Aligned_cols=237  Identities=10%  Similarity=0.095  Sum_probs=185.7

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCC-c----cceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      +.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. .    .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg  148 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS  148 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence            7899999999999996 89999999999999999986432 1    123357799999999999999874 567999999


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE-----EEEecC
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN  540 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~d  540 (1092)
                      +|+|||+.+++.+..+. |...|.+++|++  +|.+|++++.|+.|++||++++.....+..|.+.+..     ..|+++
T Consensus       149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            99999999999888776 667899999954  6789999999999999999999888888888765433     335689


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358          541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      +.++++++.++..++.|++||+++ ++.+..+..+. +.+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~  303 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY  303 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence            999999887655557899999985 55555554332 12333334445568888999999999999998764 3344433


Q ss_pred             CCCCCCceEEEccCC
Q 001358          620 GGLPENPRICFNKNG  634 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~  634 (1092)
                      ....++.+++|.|..
T Consensus       304 ~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        304 KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCCccceEEcccc
Confidence            344567889999964

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.6e-26  Score=250.51  Aligned_cols=277  Identities=14%  Similarity=0.198  Sum_probs=212.3

Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCcc------c------------------cCc-cccc---------c
Q 001358          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K  777 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~------~------------------~~~-~~~~---------~  777 (1092)
                      .|.+.|.++.||+||++|++++.||.|+||.+.....      .                  ... ....         .
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876211      0                  000 0000         0


Q ss_pred             cCCccccCCCCCceeeec-CCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC
Q 001358          778 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN  856 (1092)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~  856 (1092)
                      ..-.+....... +.... ....+|...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus       345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD  422 (712)
T KOG0283|consen  345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD  422 (712)
T ss_pred             CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence            000001100000 00000 012369999999999988754444449999999999999999997 999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358          857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      +|+++|+-||.|+||++...+++.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+.....-+....+.....
T Consensus       423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~  501 (712)
T KOG0283|consen  423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG  501 (712)
T ss_pred             CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence            99999999999999999987766655544 77999999999999999999999999999987766655555554443333


Q ss_pred             CCceEEEEecCCC--EEEEEeCCcEEEEEcCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358          937 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       937 ~~v~~l~~s~dg~--~la~~~d~~v~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                      ..|+++.|.|...  .|+++.|..|+|||..+...+..+...+ ...-....|+.||++|++++.|..|++|+++...
T Consensus       502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            4799999987654  7888999999999998877777754434 3445678899999999999999999999985443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=221.09  Aligned_cols=297  Identities=14%  Similarity=0.185  Sum_probs=244.1

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+.+.|.||++.||.|+...... ++.+++.|.+.+||.+++|.++..                   +.||.+.|++++|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikf  198 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKF  198 (481)
T ss_pred             eehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEe
Confidence            45678899999999999988776 899999999999999999999986                   7899999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEcc------CC--------C----------------------Cc-cceEEecccccceeEE
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYH------GG--------S----------------------DA-RQQLEIDAHVGNVNDL  447 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~------~~--------~----------------------~~-~~~~~l~~h~~~v~~~  447 (1092)
                      ++.+.++++++.|++.+||...      ..        +                      .+ -+...+.+|.+.|.++
T Consensus       199 h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~  278 (481)
T KOG0300|consen  199 HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC  278 (481)
T ss_pred             ccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence            9999999999999999999721      10        0                      01 1244688999999999


Q ss_pred             EeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEec
Q 001358          448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYD  526 (1092)
Q Consensus       448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~  526 (1092)
                      .|...|+  -+++++.|.+..+||+++|+.+..+.||....+.++-+|  ..+++++.+.|.+.++||++..- .+..+.
T Consensus       279 dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VFQ  354 (481)
T KOG0300|consen  279 DWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVFQ  354 (481)
T ss_pred             hhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeeec
Confidence            9999999  699999999999999999999999999999999988765  55799999999999999998543 345789


Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw  605 (1092)
                      +|...|+++.|..|.+ +++++.    +.+|.+||+++.. .+.++...    .+++.++.+..++.++.--.+..|++|
T Consensus       355 GHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRlf  425 (481)
T KOG0300|consen  355 GHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRLF  425 (481)
T ss_pred             ccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEEE
Confidence            9999999999988765 556654    7789999998754 45555543    588999999888888888889999999


Q ss_pred             ECCCCceEEEE--eCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCC
Q 001358          606 DMNKVQLLTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       606 d~~~~~~~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |+....+....  ...++...|.|++|..+.  .-|++++.|..+.-|.+...
T Consensus       426 DlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  426 DLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            99765433222  223445568899998643  35788889999999987654

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=7.1e-26  Score=230.51  Aligned_cols=293  Identities=14%  Similarity=0.193  Sum_probs=235.3

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeee----cccccceeEEeeecCCCCcEEEE
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWD----IGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d----~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      .+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|....-    +|.    +..-..+++..- ++|...|.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence            366778888999999999999 589999999999999999985521    111    111122333322 4899999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +.||||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|.+|++|+++....+.++-
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence            999999999999999999999999988776   6889999999999987666  69999999999999999999999999


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      ||...|.++....  -+..+.+|+.|+++++|++ ..+....+.++.+.+.+++|-.+. .+++|+.    ++.|.+|++
T Consensus       284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~  355 (479)
T KOG0299|consen  284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL  355 (479)
T ss_pred             CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence            9999999987643  3345556669999999999 455666778888899999997654 5667765    677999999


Q ss_pred             CCCeEEEEEeecc-ccC--------CceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCCCCCCceEE
Q 001358          563 SEGAIKRTYQGLQ-LQH--------NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       563 ~~~~~~~~~~~~~-~~~--------~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~  629 (1092)
                      ...+++.+....+ ...        ..|++++..|..+.+++|+.+|.|++|-+.++    .++..+...   ..|++++
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~  432 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA  432 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence            9988877654321 111        27899999999999999999999999999887    344444433   4589999


Q ss_pred             EccCCCEEEEEe
Q 001358          630 FNKNGTLLAVIA  641 (1092)
Q Consensus       630 ~s~~~~~l~~~~  641 (1092)
                      |+++|+.+++|.
T Consensus       433 f~~sgk~ivagi  444 (479)
T KOG0299|consen  433 FSNSGKRIVAGI  444 (479)
T ss_pred             EccCCCEEEEec
Confidence            999999766663

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.3e-25  Score=209.91  Aligned_cols=253  Identities=16%  Similarity=0.246  Sum_probs=212.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|...|.+++|+.+|.+||+|+.|+++.+|+++..+.... ....+|.+.|..++|.|.... .+++++.|.+|++||
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD   93 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence            567999999999999999999999999999999998754432 356789999999999998766 799999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.++++...+....+.++ ++|  +++|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...   
T Consensus        94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~---  166 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN---  166 (313)
T ss_pred             eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence            999999998875555554 455  56788999999999999999987665544332 23566788887777766653   


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                       |.|+|.|.....-+.+..++.|.   ....++.|+|+|+++++|+.|..+.+||++.--+.+.+....  -+|..+.|+
T Consensus       167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS  240 (313)
T KOG1407|consen  167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS  240 (313)
T ss_pred             -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence             36789999888999999999988   888999999999999999999999999999888887776543  369999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeee
Q 001358          632 KNGTLLAVIANENRIKILETPESNSVDA  659 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~  659 (1092)
                      .||++||+++.|..|-|=++++|..+..
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~e  268 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWE  268 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEE
Confidence            9999999999999999988887754433

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4.8e-26  Score=213.54  Aligned_cols=285  Identities=17%  Similarity=0.250  Sum_probs=226.9

Q ss_pred             ceEEeecCC--CceEEEEEc-----CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC-C
Q 001358          337 PMSMDFHPV--QHTLLLVGT-----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G  408 (1092)
Q Consensus       337 V~~v~~spd--g~~llasg~-----~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-g  408 (1092)
                      =.++.|||-  ++..+|+++     ..|++.|-++..+.-+..  +.-+               .-++.+..++||+. .
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e   73 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE   73 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence            357889984  442333332     247899999875544432  1111               14578999999994 5


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ..+++++.||+++|||+...  -.++..++.|...|.++.|++-.++ .+++++.|++|++|+...++.++++.||...|
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I  150 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI  150 (311)
T ss_pred             ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence            67888999999999996533  2455578899999999999998776 67777999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCE-EEEEecCCCCceeEEEEeCCCC-e
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEG-A  566 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~-~  566 (1092)
                      ....|+|. ...++++++.||++++||++.......+..|...+.++.|+.-... +++++.    ++.|+.||+++- .
T Consensus       151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~  225 (311)
T KOG0277|consen  151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT  225 (311)
T ss_pred             EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence            99999987 4579999999999999999998888889999999999999986554 555544    778999999864 4


Q ss_pred             EEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCC
Q 001358          567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE  643 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d  643 (1092)
                      .+..+.+|.   -.|..+.|+|.. ..|++++.|-++||||...+ ..+.+...|  ...+..+.|++ ++.++|..+.|
T Consensus       226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD  300 (311)
T KOG0277|consen  226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD  300 (311)
T ss_pred             cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence            567777777   899999999975 56788999999999999854 344444444  34577888887 78899999999


Q ss_pred             CeEEEEEC
Q 001358          644 NRIKILET  651 (1092)
Q Consensus       644 g~i~iw~~  651 (1092)
                      +.++||+.
T Consensus       301 e~l~Vw~p  308 (311)
T KOG0277|consen  301 ELLYVWNP  308 (311)
T ss_pred             cceeeecc
Confidence            99999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-25  Score=216.60  Aligned_cols=313  Identities=13%  Similarity=0.157  Sum_probs=234.4

Q ss_pred             eeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccccc
Q 001358          657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  736 (1092)
Q Consensus       657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  736 (1092)
                      +..+++|...|++++|+                      .||+++++++.|++|++|++..-....-+.++.  ....+.
T Consensus        79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~--nve~dh  134 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ--NVEYDH  134 (420)
T ss_pred             hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhc--cccCCC
Confidence            34678999999999996                      789999999999999999976432222111111  112346


Q ss_pred             EEEEEEecCCcEEEEeec-CCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358          737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       737 i~~l~~s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .+.++|+||-+.++.... ...+++|.+.....   |....  ...-||-..        +. .-|...+..+-...+++
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f~-~kh~v~~i~iGiA~~~k  200 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------FE-RKHQVDIINIGIAGNAK  200 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------cc-hhcccceEEEeecCCce
Confidence            788999999887766554 46899998765432   11110  111122000        10 12667778888889999


Q ss_pred             EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC---c-----eeeEeecccc
Q 001358          816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS  886 (1092)
Q Consensus       816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~  886 (1092)
                      ++++++ |..|.+|++. |+.+..+......-+..++|| +|+++|+++.--.|++|.+--   |     +.+..|+||.
T Consensus       201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence            999998 6789999998 888888877777778899999 999999999999999998732   2     2356789999


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee--eeeeeecCCCC-cCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001358          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~--~~~~~~~~~~~-~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd  963 (1092)
                      ..|..++||++...++|+|.||+++|||.+-....  ..+.++..... ....+....++++|.|+.||++....+++|.
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~  358 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA  358 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence            99999999999999999999999999998642211  11222222111 1111344589999999999999999999999


Q ss_pred             cCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      .++|+....+...|...|+++.|++||++++|++ |..+++..-..|
T Consensus       359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence            9999988887888999999999999999999996 788998864433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.5e-24  Score=199.28  Aligned_cols=308  Identities=14%  Similarity=0.135  Sum_probs=226.7

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ....|.+++|.|.|...++++...++++-.++.-.....+...+..++.+.           -...+.|.+.|.|.+|||
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~-----------~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL-----------CKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEE-----------eeeccccCccEEEEEecC
Confidence            567899999999999999999999998876654322112222111111111           011225899999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCcee-----eEEecCCCCCeEEEEEcCC---CCCEEEEEe-CCCeEEEEEcCCceeeEee
Q 001358          813 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l  882 (1092)
                      +|+++++++ |.+|++..++...+     -..+.-|.+.|..++|-.+   ++.+|++++ .|..|++-|...|+....+
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~  179 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL  179 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence            999999998 68888877654332     2356679999999999642   466788765 4678999999999999999


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEE
Q 001358          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAI  961 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~l  961 (1092)
                      .||++.|.++ ++-+|-++++|+.|.+|++||+.-.......- ....+.--.+..|.+++..|.|++|+++ .|....+
T Consensus       180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~l  257 (350)
T KOG0641|consen  180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCML  257 (350)
T ss_pred             cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEE
Confidence            9999999886 34578999999999999999998644222110 1111111112479999999999999996 6788999


Q ss_pred             EEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCC
Q 001358          962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1041 (1092)
Q Consensus       962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1041 (1092)
                      ||+..+..++. +..|+..|.++.|||...|+++++.|..|++=|+... +...+.....-.   |  .-..+.+.|+|+
T Consensus       258 ydirg~r~iq~-f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~vv~e---h--kdk~i~~rwh~~  330 (350)
T KOG0641|consen  258 YDIRGGRMIQR-FHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIMVVAE---H--KDKAIQCRWHPQ  330 (350)
T ss_pred             EEeeCCceeee-eCCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceEEEEe---c--cCceEEEEecCc
Confidence            99999999988 4579999999999999999999999999999999854 322222111111   1  123456889997


Q ss_pred             CCCEEEEEeCCCcEEEEecC
Q 001358         1042 KPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1042 ~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      | --|++.+.|.++.+|-++
T Consensus       331 d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 D-FSFISSSADKTATLWALN  349 (350)
T ss_pred             c-ceeeeccCcceEEEeccC
Confidence            4 668899999999999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.6e-25  Score=238.86  Aligned_cols=284  Identities=18%  Similarity=0.296  Sum_probs=242.0

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEE-EE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~-l~  403 (1092)
                      .+.+.|.||+..|..+++.++.  .++++|.||++++|+-..++.+.+.                 .+.+|.+-|.+ ++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~   65 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC   65 (745)
T ss_pred             eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence            4568899999999999998887  4889999999999998777666432                 25568888877 88


Q ss_pred             ECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +-+ |+-.|++|+.|.+|.+|.+.+...+.   .+.+|...|.+++...++.   ++|||.|.++++|-  .+++...+.
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~  137 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ  137 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence            885 66679999999999999999987766   7899999999999887775   99999999999994  567778899


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +|...|.+++..+..   .++||+.|++|++|.  .++...++.+|..-|+.+++-+++.+ ++|+.    ++.|+.|++
T Consensus       138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~f-lScsN----Dg~Ir~w~~  207 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHF-LSCSN----DGSIRLWDL  207 (745)
T ss_pred             CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCe-EeecC----CceEEEEec
Confidence            999999999886543   899999999999994  46778889999999999999888765 46654    778999998


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                       +|+.+..+.+|.   .-++++....++..++++++|++++||+..  .+.+.+..++.  .+.++.+-++|. +++|+.
T Consensus       208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence             899999999998   899999988888999999999999999976  77788776643  478888888786 778889


Q ss_pred             CCeEEEEECCCC
Q 001358          643 ENRIKILETPES  654 (1092)
Q Consensus       643 dg~i~iw~~~~~  654 (1092)
                      ||.||||.....
T Consensus       279 DG~VrVfT~~k~  290 (745)
T KOG0301|consen  279 DGRVRVFTVDKD  290 (745)
T ss_pred             CceEEEEEeccc
Confidence            999999987744

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-23  Score=231.93  Aligned_cols=570  Identities=12%  Similarity=0.116  Sum_probs=353.7

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCc-EEEEEEeCCCcEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW  470 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~-l~l~s~~~d~~i~vw  470 (1092)
                      +.|-...-..-.||+|+++++....+ .|.||...+|+++.   .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw   87 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW   87 (792)
T ss_pred             eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence            44444444456799999999988655 59999999998887   78899999999999987663 478899999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecc------------cCCccEEEEEecC--CeEEEEEcCCCCce-E-EecCCCCceEE
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHA------------KENIHFIFSISVD--GKIKAWLYDSLGAR-V-DYDAPGLGCTR  534 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~------------~~~~~~l~s~~~d--g~i~vwd~~~~~~~-~-~~~~~~~~i~~  534 (1092)
                      |...+..++++..+.. +..+.+.+            ..+-..+.+.+.+  ++++-+.+.+.... . ....+. .-.+
T Consensus        88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~-~~~~  165 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ-EPKS  165 (792)
T ss_pred             cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc-CCcc
Confidence            9999999988864432 32222211            1111111111111  11111111111000 0 011111 1356


Q ss_pred             EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cc
Q 001358          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQ  611 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~  611 (1092)
                      +.+++.|.+...+.     +..+.+|+..++.... ....+..|...+++.+++|+++++++|..||.|.+|.--.  +.
T Consensus       166 I~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~  240 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD  240 (792)
T ss_pred             EEEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence            78888888877765     3348888887755111 1111222335589999999999999999999999996433  22


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeec
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                      .......|-|...|.+++|+++|.+|.+|+..+.+.+|.+.+++.. -+.                              
T Consensus       241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP------------------------------  289 (792)
T KOG1963|consen  241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP------------------------------  289 (792)
T ss_pred             cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc-ccc------------------------------
Confidence            2222222333457999999999999999999999999999887421 111                              


Q ss_pred             CCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccC
Q 001358          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~  771 (1092)
                                                            .  -.+.|..+.+|||+...+....|+.|.+-....-..   
T Consensus       290 --------------------------------------R--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~---  326 (792)
T KOG1963|consen  290 --------------------------------------R--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI---  326 (792)
T ss_pred             --------------------------------------c--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh---
Confidence                                                  0  345678888999999888888898888866533211   


Q ss_pred             cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEeCCeEEEEEcCCceeeEEec-----CCC--
Q 001358          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIM-----PPS--  843 (1092)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~~~-----~~~--  843 (1092)
                           ..++.-..+.+..      . ......-.+.++++|. +..+..+-.|.|.+||+.+.+.+..+.     .+.  
T Consensus       327 -----k~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~  394 (792)
T KOG1963|consen  327 -----KSTISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGD  394 (792)
T ss_pred             -----hhhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCc
Confidence                 0011111111000      0 0013444567888884 444444457999999998877665442     122  


Q ss_pred             ----CCeEEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCcee----eEe-eccccCCeEEEEEcCC-C-CEEE
Q 001358          844 ----PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----ISK-LEGHSKRVTGLVFSDA-L-NILV  902 (1092)
Q Consensus       844 ----~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~~~-l~~h~~~V~~l~~spd-g-~~l~  902 (1092)
                          -.+++++.+. .|.+++|+-        .||  .+++|-......    ... ...|...+...+|.+. . .+++
T Consensus       395 ~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~v  473 (792)
T KOG1963|consen  395 VNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCV  473 (792)
T ss_pred             ceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeE
Confidence                2468888888 699999863        333  567887654332    222 2358887777666542 2 3899


Q ss_pred             EEeCCCcEEEEEcCCCcee-----eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC
Q 001358          903 SSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS  977 (1092)
Q Consensus       903 s~s~Dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h  977 (1092)
                      |+|.||.++||-+.+.+..     ...+.....-+.   ..+++++||.||..|+++.+++|.+||..+...+.......
T Consensus       474 ta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~  550 (792)
T KOG1963|consen  474 TASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR  550 (792)
T ss_pred             EeccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc
Confidence            9999999999998443211     111222221122   36899999999999999999999999998843332222222


Q ss_pred             CcCEEEEEEec----CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC------CccCcccceEEEECCCCCCEEE
Q 001358          978 SVPISQATFSC----DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT------TSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus       978 ~~~v~~l~fs~----dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~p~~~~~l~ 1047 (1092)
                      ..++..++|..    ++.  +.......+.+|++-+..+...+.........      .....+-+..+++-+..+..+.
T Consensus       551 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p~~~~  628 (792)
T KOG1963|consen  551 NWPIAELLFTAQTQNDGA--LVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLPELLL  628 (792)
T ss_pred             ccchHhHhhhcccccccc--eeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecccchh
Confidence            34444444433    333  23335678999999999888744332222220      0011222222322221223333


Q ss_pred             --------EEeCCCcEEEEecCCCC
Q 001358         1048 --------VGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1048 --------~~~~dg~v~~w~~~~~~ 1064 (1092)
                              +.+.|+.|.+|+...++
T Consensus       629 ~~k~~~~~f~~~~~ril~F~~~~pk  653 (792)
T KOG1963|consen  629 VVKSIEQIFRGRDSRILIFSGDSPK  653 (792)
T ss_pred             hhhhhhhhcccccceEEEecCCCch
Confidence                    77888899999887666

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=9.8e-26  Score=231.69  Aligned_cols=298  Identities=17%  Similarity=0.229  Sum_probs=224.4

Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001358          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      +|...|.++++.|.|.++++|+-|..+++||++.-..+          .+-           +..-.+.....|.++.||
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~-----------fr~l~P~E~h~i~sl~ys  223 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS-----------FRQLQPCETHQINSLQYS  223 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh-----------hhccCcccccccceeeec
Confidence            47888999999999999999999999999998753210          000           001111356688999999


Q ss_pred             cCCCEEEEEeC-CeEEEEEcCCceeeE------------EecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-
Q 001358          812 KNDAYLFSASG-GVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-  877 (1092)
Q Consensus       812 ~dg~~l~~~sd-g~i~iwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-  877 (1092)
                      +.|..+++.+. ...+|+|-...+...            .-++|...++|.+|+|.....+++++.||+++|||+...+ 
T Consensus       224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence            99988888874 779999976544332            2357888999999999888899999999999999998753 


Q ss_pred             eeEeec-----cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358          878 VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       878 ~~~~l~-----~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                      .+..++     +-.-+++.++|++||+++|.|..||.|.+|+..+.....  .+.....|.. ...|++++||+||++|+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL  380 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence            333332     244578999999999999999999999999986533222  2222222321 23699999999999999


Q ss_pred             E-EeCCcEEEEEcCCcee-eeeecc-CCCcCEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceEEeeccccccC
Q 001358          953 L-VHETHLAIYEAEELTC-LKQWFP-ISSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLR 1023 (1092)
Q Consensus       953 ~-~~d~~v~lwd~~~~~~-~~~~~~-~h~~~v~~l~fs~dg~~l~t~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~ 1023 (1092)
                      + +.|+++++||+...+. +..+.. ....+-+.++||||.++|+||+.      .|.+.+||..+...+.++...    
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----  456 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----  456 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence            9 9999999999986543 333211 12456778999999999999874      478999999999999887622    


Q ss_pred             CCCccCcccceEEEECCCCCCEEEEEeCCCcEEE-EecCCCC
Q 001358         1024 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPG 1064 (1092)
Q Consensus      1024 ~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~-w~~~~~~ 1064 (1092)
                            ......+.|||. -+++.+|+.||++++ ||...+.
T Consensus       457 ------~aSvv~~~Whpk-LNQi~~gsgdG~~~vyYdp~~S~  491 (641)
T KOG0772|consen  457 ------TASVVRCLWHPK-LNQIFAGSGDGTAHVYYDPNESI  491 (641)
T ss_pred             ------CceEEEEeecch-hhheeeecCCCceEEEECccccc
Confidence                  123456889994 578999999999986 5665544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.9e-26  Score=241.49  Aligned_cols=353  Identities=17%  Similarity=0.211  Sum_probs=263.1

Q ss_pred             cCCCCce---EEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       332 ~h~~~V~---~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      .|...|.   .+..++.+.++|.+|+.||.|++|++..-.....            .+ -...+..|.+.|+.++...+|
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~   85 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG   85 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence            3444555   5556654444799999999999999876433211            00 011266799999999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe-eCCCCcEEEEEEeCCCcEEEEECCCC--ceeEE-----
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG--SRTYS-----  480 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~-s~d~~~l~l~s~~~d~~i~vwd~~~~--~~~~~-----  480 (1092)
                      +.|+++|.|-+|++|+...+. -....+++.|...|.|+++ -++..  ++|+||-|+.|.+||+.+|  +.+.+     
T Consensus        86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t  162 (735)
T KOG0308|consen   86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT  162 (735)
T ss_pred             CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence            999999999999999998873 1222267889999999999 66666  8999999999999999988  33322     


Q ss_pred             ---Ee-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358          481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       481 ---~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                         +. |+..+|++++.+  ++|..+++|+..+.+++||.++...+..+.+|...|..+..++||+++++++.    +++
T Consensus       163 ~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt  236 (735)
T KOG0308|consen  163 VNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT  236 (735)
T ss_pred             cccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence               23 788889999874  45679999999999999999999999999999999999999999999999986    778


Q ss_pred             EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE
Q 001358          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  636 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~  636 (1092)
                      |++||+...+++.++..|.   ..|+++..+|+-..+++|+.||.|+.=|+.+......+-...  .+|..+..+...+-
T Consensus       237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~~~~~~  311 (735)
T KOG0308|consen  237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLHEHDNS  311 (735)
T ss_pred             EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCC--CchhhhhhccccCC
Confidence            9999999999999999988   779999999999999999999999999998854333332221  24677777765555


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeeccc-------ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccc
Q 001358          637 LAVIANENRIKILETPESNSVDAAGV-------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1092)
                      +-+++.|+.|+-|.......+.....       ....+.+....|+...-+..+-....     .-.|.+.+++-...|.
T Consensus       312 ~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~-----mL~dkRhVlTkDa~gn  386 (735)
T KOG0308|consen  312 VWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHA-----MLNDKRHVLTKDAKGN  386 (735)
T ss_pred             ceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhh-----hhcCcceEeeecCCCC
Confidence            68888999999998764322211111       11111111111211111111101111     1467889999999999


Q ss_pred             cceecee
Q 001358          710 SEVEKPL  716 (1092)
Q Consensus       710 i~~w~~~  716 (1092)
                      +.+||+-
T Consensus       387 v~lwDIl  393 (735)
T KOG0308|consen  387 VALWDIL  393 (735)
T ss_pred             EEEEEee
Confidence            9999965

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.2e-26  Score=232.41  Aligned_cols=285  Identities=18%  Similarity=0.248  Sum_probs=240.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|..++|+++.|.++++  .+++++.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence            66799999999999999999999999999999998876 333447788889999999999999  789999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +...+...++.||.+.|+++.|....  ..+++|+.|.+|+.||+....+..+.. ....+..++.+  +..++++..  
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~--  320 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF--  320 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence            99999999999999999999986543  349999999999999999866654433 22344445544  445666655  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CCCCceEE
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC  629 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~  629 (1092)
                        +..|+.||.++..+......+    +.|+++..++++..+++++.|.++.+.|+.+.+....+...+.  ....+.+.
T Consensus       321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence              556999999999999888875    4899999999999999999999999999999998888875532  23478899


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCCeeeeccccccc--ceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      |||++.|+++|+.||.|+||++.+++....+......  |++++|+                      |.|..+++++.+
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~  452 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ  452 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence            9999999999999999999999999888877765554  8999997                      567788889888


Q ss_pred             cccceec
Q 001358          708 NKSEVEK  714 (1092)
Q Consensus       708 ~~i~~w~  714 (1092)
                      +.+.+|.
T Consensus       453 ~~v~lW~  459 (459)
T KOG0288|consen  453 KAVTLWT  459 (459)
T ss_pred             cceEecC
Confidence            8888884

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.2e-24  Score=244.88  Aligned_cols=270  Identities=17%  Similarity=0.198  Sum_probs=210.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc----------cceEEecccccceeEEEeeC-CCCcEEEEEEeC
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD  463 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~  463 (1092)
                      |-..|.....++|+..+++++.+.....|+...+..+          .....+.+|.+.|.+++|+| +++  +|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence            3456677778888777788777777777776544321          11224779999999999999 777  7999999


Q ss_pred             CCcEEEEECCCC-------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358          464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       464 d~~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      |++|++||+.++       +.+..+.+|...|.+++|++.. +.+|++++.|++|++||+.+......+..|...|.+++
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            999999999765       3567889999999999998753 35899999999999999999888888888999999999


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc-
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ-  611 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~-  611 (1092)
                      |+|+|.+|++++.    ++.|++||+++++.+..+.+|.  ...+..+.|.+++..+++++    .|+.|++||+++.. 
T Consensus       176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9999999999976    6779999999999998888876  23355678999888888754    47999999998754 


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeeeccc-ccccceeeeecC
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP  674 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~  674 (1092)
                      .+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ...++..+++.|
T Consensus       250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence            333333222 23455677899999999887 499999999998876655432 233455555554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=209.81  Aligned_cols=241  Identities=19%  Similarity=0.278  Sum_probs=205.3

Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001358          799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~  875 (1092)
                      ..|...++++|+  ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ...  .|++|+.||.|.+|+...
T Consensus        40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence            359999999998  689999998 89999999999999999999999999999998 554  899999999999999999


Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001358          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                      .+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-+|+......+..         ..+.+.|+|.|.+++++.
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence            99999999999999999999999999999999999999999877443222222         234599999999999988


Q ss_pred             CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceE
Q 001358          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus       956 d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
                      .+.|-+|.+.+.........  ..++.++.|- ++..|++|+.|+.|.+||.+++...+.+.        .|...|..+.
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--------AH~~RVK~i~  256 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL--------AHENRVKDIA  256 (362)
T ss_pred             ccEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee--------cchhheeeeE
Confidence            89999999988776665332  3567777775 56689999999999999999988887777        3566777665


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001358         1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      .--.| ++.+|++++.||.|++||+...
T Consensus       257 ~~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  257 SYTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEecC-CceEEEEeccCceEEEEEcccc
Confidence            54555 5789999999999999999754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.1e-25  Score=223.75  Aligned_cols=250  Identities=21%  Similarity=0.280  Sum_probs=213.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceE--------------Ee-cccccceeEEEeeCCCCcE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--------------EI-DAHVGNVNDLAFSAPCKQI  456 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--------------~l-~~h~~~v~~~~~s~d~~~l  456 (1092)
                      ...|.-+|.+++++||+++..+++.+++|.=|++.+|...+...              .- ++|...+.+++.|+||+  
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence            55799999999999999999999999999999999887431110              11 37888999999999999  


Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      +|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|....  ..+++++.|+.|++|+++....+.++.+|...|..+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            89999999999999999999999999999999999996543  5799999999999999999998889999999999998


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      ...-++.+-+++.    |.++++|++. .+....+.++.   +.+.|++|-.+ ..+++|+.+|.|.+|++.+.+++.+.
T Consensus       294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             hhcccceEEeccc----cceeEEEecc-ccceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            8888887777765    6779999994 33445667766   78999999865 68999999999999999999888766


Q ss_pred             eCCCC----------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          617 DAGGG----------LPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       617 ~~~~~----------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ....+          ...|++++..|...++|+|+.+|.|++|.+.++
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            43211          125788999999999999999999999998876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=5.1e-25  Score=247.64  Aligned_cols=280  Identities=17%  Similarity=0.240  Sum_probs=242.1

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      .+...+.+..|.  +.++++++.+++|++||..++..+..  .+.||.+.|++++|..-+.  ++++|+.|.++++||..
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS  279 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence            366788888888  77899999999999999999875552  3889999999999987555  79999999999999999


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      +|++.+.+.+|...|.++..    ....+++|+.|.+|++|+++++..+..+.+|..+|.++..+  +.++++++.    
T Consensus       280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----  349 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----  349 (537)
T ss_pred             CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence            99999999999999999976    34578899999999999999999999999999999999987  889999987    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCCCCceEEEcc
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ++.|.+||+.+++++..+.+|.   ..|.++.+.+. +.+++|+.|++|++||+.++ +++.++..|...  +..+  ..
T Consensus       350 d~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~  421 (537)
T KOG0274|consen  350 DGTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LL  421 (537)
T ss_pred             CceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--cc
Confidence            5679999999999999999988   99999988776 89999999999999999999 899999877542  3333  34


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeeccc-ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358          633 NGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      .+++|++++.|++|++||..++..+..+.+ +...+..+...                        ...+++++.+++++
T Consensus       422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~  477 (537)
T KOG0274|consen  422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVK  477 (537)
T ss_pred             ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeE
Confidence            588999999999999999999999999988 45666555443                        35678899999999


Q ss_pred             eeceeeccCc
Q 001358          712 VEKPLFARPS  721 (1092)
Q Consensus       712 ~w~~~~~~~~  721 (1092)
                      +||+......
T Consensus       478 l~dl~~~~~~  487 (537)
T KOG0274|consen  478 LWDLRSGTLI  487 (537)
T ss_pred             EEecccCchh
Confidence            9998754433

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.2e-26  Score=225.38  Aligned_cols=293  Identities=11%  Similarity=0.157  Sum_probs=233.1

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ++-+..|.||.+.|.|+|=+|..-..+|+|+.||.|+|||+.+.+++.+                   +..|.+.|..++
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC  116 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence            4455678999999999999999844699999999999999999888775                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      +..  ..+++++.|.+|+.|.++.. .++   ++.+ ...+..+.-+..+.  .++|||.+  |.|||.....+++++.-
T Consensus       117 v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smsw  185 (433)
T KOG0268|consen  117 VTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSW  185 (433)
T ss_pred             ecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCce--eeecccccCCccceeec
Confidence            987  77888999999999998873 222   3333 23456666655566  68898865  99999999999999988


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ....|.++.|+|... .+|++++.|+.|.+||++...++...... -.-..++|+|.+-.++++..    |..++.+|++
T Consensus       186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~E----D~nlY~~DmR  259 (433)
T KOG0268|consen  186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANE----DHNLYTYDMR  259 (433)
T ss_pred             CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccc----cccceehhhh
Confidence            888899999988754 58888999999999999988876644322 13456899996655666543    7789999987


Q ss_pred             CC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .- ..+..+.+|.   ..|..+.|+|.|+-+++||.|.+|+||....+..-..... .....|.++.||.|.+++++|++
T Consensus       260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd  335 (433)
T KOG0268|consen  260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD  335 (433)
T ss_pred             hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence            53 3455566665   8999999999999999999999999999987654332211 12235899999999999999999


Q ss_pred             CCeEEEEECCCCCe
Q 001358          643 ENRIKILETPESNS  656 (1092)
Q Consensus       643 dg~i~iw~~~~~~~  656 (1092)
                      |+.|++|.....+.
T Consensus       336 d~nvRlWka~Asek  349 (433)
T KOG0268|consen  336 DGNVRLWKAKASEK  349 (433)
T ss_pred             Ccceeeeecchhhh
Confidence            99999998775433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=8.6e-24  Score=221.94  Aligned_cols=217  Identities=16%  Similarity=0.181  Sum_probs=163.2

Q ss_pred             eeecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCCcc---ceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358          390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~---~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      .++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|....   .-..+.+..-.|.++.|+|.... +++ .+..|
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g  150 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHG  150 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCc
Confidence            34889999999999999 77899999999999999998543221   12223344457899999998774 344 45588


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC-ceEEEEEecCCCE
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL-GCTRMAYSANGRR  543 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~-~i~~~~~s~dg~~  543 (1092)
                      +++|||+.+++.+..+.+|...|.++.|  +.||.+|++.+.|+.|+|||.+... .+.....|++ .-..+.|..+-.+
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r  228 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER  228 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence            9999999999999999999999999998  6789999999999999999988654 3445555554 3345677777668


Q ss_pred             EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce
Q 001358          544 LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~  612 (1092)
                      |++.+.+......|++||.+.. ..+.++.-..  ...|.---|.||.+.++. |-.+.++..+.+...+.
T Consensus       229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP  297 (1012)
T KOG1445|consen  229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP  297 (1012)
T ss_pred             hhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence            8877776655677999998753 3444444333  234555578899877765 44677888888776543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.6e-25  Score=236.86  Aligned_cols=242  Identities=21%  Similarity=0.255  Sum_probs=208.0

Q ss_pred             EEEEC-CCCCEEEEEeCCCEEEEEEccCCCCc---cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-
Q 001358          401 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-  475 (1092)
Q Consensus       401 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-  475 (1092)
                      .+..+ |.++||.+|+.||.|++|++......   .....+..|...|+.++...+|+  .|+++|.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            44444 46788999999999999998754331   12346788999999999999998  7999999999999999887 


Q ss_pred             -ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eE--------Eec-CCCCceEEEEEecCCCE
Q 001358          476 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR  543 (1092)
Q Consensus       476 -~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~dg~~  543 (1092)
                       -++.++..|...|.++++. ..+...+++|+-|+.|.+||++++..  ..        .+. ++..+|++++.++.|..
T Consensus       107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~  185 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI  185 (735)
T ss_pred             chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence             6788899999999999984 34567999999999999999997633  11        122 56678999999999988


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      +++|+.    ++.+++||.++++.+..+.||.   ..|..+..++||..++++|.||+|++||+...+++.++..|..  
T Consensus       186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--  256 (735)
T KOG0308|consen  186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--  256 (735)
T ss_pred             EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence            888876    4559999999999999999999   9999999999999999999999999999999999999988755  


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .|.++..+|+-.++.+|+.||.|..=|+.+.
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            4899999999999999999999998888764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.2e-24  Score=207.78  Aligned_cols=274  Identities=16%  Similarity=0.161  Sum_probs=214.9

Q ss_pred             ecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       392 l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      -...++.|.+++||| ...+++++|.|++|++|+++....+.. .....|.++|.+++|+.||.  .+++|+-|+.+++|
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW   99 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence            335678999999999 566667889999999999987322222 24557999999999999998  79999999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      |+.+++ +..+..|.++|.++.|....+-..|++||.|++|++||.+...+...+..++ .++++..  -..+++++.. 
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-  174 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-  174 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec-
Confidence            999994 5667789999999999877777799999999999999999888887776655 3333322  2234455443 


Q ss_pred             CCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCC------
Q 001358          551 KEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------  621 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~------  621 (1092)
                         +..|.+|+++.+.... .....-  .-.+++++..++....+.|+-+|.+.|..+..+  +.-.++..|..      
T Consensus       175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence               5559999997664332 222222  356889999999888899999999999998876  33334444432      


Q ss_pred             -CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358          622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       622 -~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                       .-.|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..+..
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence             235788999999999999999999999999988888888999999999999855443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.1e-24  Score=204.57  Aligned_cols=200  Identities=18%  Similarity=0.234  Sum_probs=165.1

Q ss_pred             CCCCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358          801 SQEAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       801 ~~~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      |..+|.++.+.+- ++.+++++ |++|++|+....+.++++.+|...|...+|+|...+++++++.|+.+++||++....
T Consensus       103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk  182 (311)
T KOG0277|consen  103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK  182 (311)
T ss_pred             hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence            5666666666653 33444455 899999999999999999999999999999999999999999999999999987544


Q ss_pred             eEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE-E-Ee
Q 001358          879 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-L-VH  955 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la-~-~~  955 (1092)
                      ...+..|...|.++.|+. +.+.|+||+.|+.|++||+..-+    .++..+.+|.-   .|..+.|||...-|+ + +.
T Consensus       183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY  255 (311)
T KOG0277|consen  183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY  255 (311)
T ss_pred             eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence            444889999999999997 66889999999999999998743    23444456554   799999999876554 4 58


Q ss_pred             CCcEEEEEcCCceeeeeeccCCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 001358          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       956 d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                      |-+++|||...+.........|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus       256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            899999999877665555778999999999998 6789999999999999984

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=7.8e-24  Score=213.54  Aligned_cols=284  Identities=16%  Similarity=0.184  Sum_probs=244.1

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..+.++...|... .+.+|+.|..+.++|..+++.+..                   ++||.-.|+.+.|+|+...++++
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a  279 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA  279 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence            4788888888744 689999999999999999998875                   88999999999999999999999


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC--CcceEEEe
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPVYSLC  492 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~i~  492 (1092)
                      +.|..|+||.........   ....|.++|+.+..+|.|.  +|++++.|++..+.|+++|+.+......  .-.+++.+
T Consensus       280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            999999999998766443   5678999999999999999  8999999999999999999988766532  23478888


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      |+|  ||.+|.+|..||.+++||+........+.+|.++|..++|+.+|-+|+++..    ++.|.+||++.-+...++.
T Consensus       355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence            855  7789999999999999999999999999999999999999999999999986    5559999999888888887


Q ss_pred             eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ...  ...+.++.|.+.|.++++++.|=.|++++-.+.+.......+.+....+.+.|....+++++++.|..++++.+
T Consensus       429 l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  429 LDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            766  45799999999999999998887788777655544433333333345789999999999999999999888754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=4e-24  Score=215.60  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=241.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      -.+.++...|....+++|+.|.++.++|..+++.+.   .++||...|+.+.|+|+..  .+++++.|..|+||......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence            467788888888899999999999999999987766   7899999999999999998  79999999999999998888


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEecCCCEEEEEecCCCCc
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      .......|..+|+.+..++  +|.||++++.||+..+.|++++.........  .-.+++.+|+|||..+.++..    +
T Consensus       295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d  368 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D  368 (506)
T ss_pred             Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence            8888899999999998866  5679999999999999999998887655543  346899999999999988875    7


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      +.|.+||+.++..+..|.+|.   ++|..++|+.+|-+++++++|+.|++||++.-+...++...... .+.++.|.+.|
T Consensus       369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG  444 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG  444 (506)
T ss_pred             ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence            789999999999999999988   99999999999999999999999999999999988888877654 68999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC--CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                      .+|+.++.+=.|++++-.+.  +.+..+..|.+..+++.|.                      ...+++++++.|..+++
T Consensus       445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL  502 (506)
T ss_pred             CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence            99999988767777664443  4555566666666666664                      45677888888877766


Q ss_pred             ec
Q 001358          713 EK  714 (1092)
Q Consensus       713 w~  714 (1092)
                      +.
T Consensus       503 ~a  504 (506)
T KOG0289|consen  503 YA  504 (506)
T ss_pred             ee
Confidence            54

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.2e-24  Score=231.86  Aligned_cols=275  Identities=20%  Similarity=0.253  Sum_probs=237.8

Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      .-+.|| ....||+|... .|++|+..++.... .  ...+...|+++.|+++|.  .|+.|..+|.|.|||..+.+.+.
T Consensus       181 nlldWs-s~n~laValg~-~vylW~~~s~~v~~-l--~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQ-SVYLWSASSGSVTE-L--CSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             hHhhcc-cCCeEEEEecc-eEEEEecCCCceEE-e--EecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhccccc
Confidence            347788 45577777544 59999999987433 2  223378999999999999  89999999999999999999999


Q ss_pred             EEec-CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          480 SFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       480 ~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      .+.+ |...|.+++|.    +..+.+|+.|+.|..+|++..+.... +..|...|..+.|++|++++++++.    |+.+
T Consensus       254 ~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~  325 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVV  325 (484)
T ss_pred             cccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccce
Confidence            9999 99999999994    46899999999999999998877665 7889999999999999999999986    6779


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      .|||......+..+..|.   ..|.+++|+|-. ..|++  |+.|+.|++||..++..+..+...   ..|..+.|++..
T Consensus       326 ~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~  399 (484)
T KOG0305|consen  326 FIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKY  399 (484)
T ss_pred             EeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCC
Confidence            999998889999999988   999999999975 45566  458999999999999999988754   458999999988


Q ss_pred             CEEEEE--eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          635 TLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       635 ~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                      +-++++  ..++.|.||+..+...+..+.+|...|..++++                      |||..+++++.|.++++
T Consensus       400 kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrf  457 (484)
T KOG0305|consen  400 KELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRF  457 (484)
T ss_pred             CEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEe
Confidence            766664  457899999999999999999999999999996                      78999999999999999


Q ss_pred             eceee
Q 001358          713 EKPLF  717 (1092)
Q Consensus       713 w~~~~  717 (1092)
                      |++-.
T Consensus       458 w~~f~  462 (484)
T KOG0305|consen  458 WNLFD  462 (484)
T ss_pred             ccccC
Confidence            99653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.3e-23  Score=203.74  Aligned_cols=272  Identities=20%  Similarity=0.292  Sum_probs=216.0

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .+.|+.|.|+|.+.. |++++.||++++||+...+....                    -.|+.++.+++|.+ ...+++
T Consensus        13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence            679999999999985 55667999999999998765542                    23899999999997 567889


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~  493 (1092)
                      |+.||.|+.+|++++...    .+..|..+|.|+.+++-..  .+++||.|++|++||.........+. ....|.++..
T Consensus        71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV  143 (323)
T ss_pred             eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence            999999999999998654    3678999999999998777  79999999999999988766665554 3347888865


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeEEE
Q 001358          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR  569 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~  569 (1092)
                          .+..|+.|+.|..+.+||+++.........  -.-.++++++-|++.-.++++.+  |...+..+|..  ......
T Consensus       144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSie--GRVavE~~d~s~~~~skky  217 (323)
T KOG1036|consen  144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIE--GRVAVEYFDDSEEAQSKKY  217 (323)
T ss_pred             ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeec--ceEEEEccCCchHHhhhce
Confidence                456899999999999999998776553322  23468999999988878877762  23334444443  113445


Q ss_pred             EEeecccc------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          570 TYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       570 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .|+.|...      ..+|++++|+|-...+++|+.||.|.+||+.+.+.+..+...  ...|..++|+.+|..||+++.
T Consensus       218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence            56666532      247899999999999999999999999999999888887644  235899999999999999976

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.5e-21  Score=210.15  Aligned_cols=279  Identities=16%  Similarity=0.218  Sum_probs=226.2

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC-ceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      ..|+..-+.++|.|+|. ++.+++.||.|++|+..+.. ....                   +.-++..|.+++..  +.
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~~--s~   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIACY--SN   67 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEeec--cc
Confidence            37888999999999999 78889999999999987762 2211                   22266777777664  55


Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceE
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      +|++|+.+++|.+|...+++.-.   .+...+-++.+++|+.+|+  +++.||.|-.|++-+..+......+++|.++|.
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence            99999999999999999886543   2445667899999999999  899999999999999999999999999999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--------CCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      ++.++|  ++.+|++.+-||.|++||++++.....+..-        ...+..++|+|+|..++..+.    ++.|.+|+
T Consensus       143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~  216 (933)
T KOG1274|consen  143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS  216 (933)
T ss_pred             eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence            999955  6689999999999999999988776554332        235678999999766666654    66799999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      ..+++....+.....+ ..+..++|+|+|.||++++.||.|.|||.++-..      |.....|.+++|.|+.+.+-.-.
T Consensus       217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence            9999998888775522 3489999999999999999999999999998222      33345689999999988776665


Q ss_pred             CCCeEEEE
Q 001358          642 NENRIKIL  649 (1092)
Q Consensus       642 ~dg~i~iw  649 (1092)
                      ..|...+|
T Consensus       290 ~~g~~~~~  297 (933)
T KOG1274|consen  290 ALGTLGVS  297 (933)
T ss_pred             eccccccC
Confidence            55555554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.4e-23  Score=201.85  Aligned_cols=243  Identities=17%  Similarity=0.246  Sum_probs=203.4

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|.++|+++|.+  |.|+|+||.|-+|+|||+....++.   .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            67899999999996  8999999999999999999887666   566799999999999987433599999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ...-.++.++++|.+.|+.++++|+  +++.++.+.|+.++.|++-.++.-....... ..+.+.|+|.|.+++..+.  
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~--  188 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGR--  188 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEec--
Confidence            9999999999999999999999775  4788999999999999998887766554433 2344899999998888764  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE-
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF-  630 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-  630 (1092)
                         ..|-+|.+.+......+...    ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|.  ..|..+.+ 
T Consensus       189 ---~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~  258 (362)
T KOG0294|consen  189 ---NKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASY  258 (362)
T ss_pred             ---cEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEE
Confidence               45889988877666555442    246666665 46789999999999999999988888888764  46887773 


Q ss_pred             -ccCCCEEEEEeCCCeEEEEECCCC
Q 001358          631 -NKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       631 -s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                       .|++.+|++++.||.|++||+...
T Consensus       259 ~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  259 TNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ecCCceEEEEeccCceEEEEEcccc
Confidence             468899999999999999999865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.3e-25  Score=217.53  Aligned_cols=284  Identities=14%  Similarity=0.225  Sum_probs=233.3

Q ss_pred             EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEE
Q 001358          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  515 (1092)
Q Consensus       436 ~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd  515 (1092)
                      .+.||...|.|++=+|..-. .+++|+.||.|+|||+.+..++.++..|.+.|..+++..    ..+++++.|.+|+.|-
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            46799999999999998622 699999999999999999999999999999999999854    5799999999999998


Q ss_pred             cCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE-
Q 001358          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-  594 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-  594 (1092)
                      ++.. ...++.+ ...+..+.-+..+..+++||.      .|.|||.....++..+.-..   ..+.++.|+|....++ 
T Consensus       136 ~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  136 IDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA  204 (433)
T ss_pred             ccCC-cceeeec-cccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence            7763 2333322 234556666666778888865      39999999888888888765   7899999999876555 


Q ss_pred             EEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-Ceeeecccccccceeeeec
Q 001358          595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN  673 (1092)
Q Consensus       595 ~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~  673 (1092)
                      +++.|+.|.+||++.+.++..+...-.   -+.++|+|++-.++++..|..++.+|+... +++....+|...|..+.|+
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence            466999999999999999887765433   578999998888999999999999999865 6777888898888888886


Q ss_pred             CCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEee
Q 001358          674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA  753 (1092)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~  753 (1092)
                                            |-|+.+++|+.|.+||||....+......-..     .-..|.++.||-|.+++++|+
T Consensus       282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS  334 (433)
T KOG0268|consen  282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS  334 (433)
T ss_pred             ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence                                  67889999999999999998754433332211     334688999999999999999


Q ss_pred             cCCeeEEeeecC
Q 001358          754 SNGVHLMWRWPR  765 (1092)
Q Consensus       754 ~dg~i~lw~~~~  765 (1092)
                      .|+.|++|.-..
T Consensus       335 dd~nvRlWka~A  346 (433)
T KOG0268|consen  335 DDGNVRLWKAKA  346 (433)
T ss_pred             CCcceeeeecch
Confidence            999999998653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.1e-24  Score=203.26  Aligned_cols=252  Identities=20%  Similarity=0.328  Sum_probs=209.7

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~  468 (1092)
                      +.+.|++.|..+...--|++||+++.|++|+|+.+..+.......+|.||.++|+.++|..  -|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            3667999999999888999999999999999999998877677889999999999999977  677  899999999999


Q ss_pred             EEECCCCce--eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEecC---
Q 001358          469 VWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---  540 (1092)
Q Consensus       469 vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~d---  540 (1092)
                      ||.-++|+-  .+....|...|++++|.|..-|-.|++++.||.|.+.+++...   .......|.-.|++++|.|-   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            999887743  4566789999999999999999999999999999999988762   23345667888999999986   


Q ss_pred             C-----------CEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCC----CEEEEEeCCCeEE
Q 001358          541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK  603 (1092)
Q Consensus       541 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~dg~i~  603 (1092)
                      |           +.|++++.    |+.|.+|+..+++  ..+++.+|.   +.|+.++|.|.-    .++++++.||++.
T Consensus       164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            5           56888876    6779999988763  345578887   999999999974    5789999999999


Q ss_pred             EEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          604 IWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       604 iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ||.....  ....++. +.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus       237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9976632  1122221 1122458899999999999999999999999755

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=8.6e-24  Score=204.01  Aligned_cols=321  Identities=11%  Similarity=0.144  Sum_probs=237.5

Q ss_pred             CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcc
Q 001358          620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1092)
                      ++...|..++.......+.+++.|.+.+||.++++.++....+|.+.|.+++|+                      +.+.
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh----------------------~s~~  203 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH----------------------NSGL  203 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec----------------------cccc
Confidence            334568888887777789999999999999999999999999999888888886                      4567


Q ss_pred             cceeeccccccceeceeeccCccceecccCC----ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc
Q 001358          700 PEISVEAENKSEVEKPLFARPSECQSLLLPS----KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  775 (1092)
Q Consensus       700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~----~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~  775 (1092)
                      ++++++.|++-.||....+       ...|.    .+|.+.- .+.-+           |....         ..++.. 
T Consensus       204 L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~hSsEe-E~e~s-----------De~~~---------d~d~~~-  254 (481)
T KOG0300|consen  204 LLLTASGDETAHIWKAAVN-------WEVPSNNAPSDHSSEE-EEEHS-----------DEHNR---------DTDSSE-  254 (481)
T ss_pred             eEEEccCCcchHHHHHhhc-------CcCCCCCCCCCCCchh-hhhcc-----------ccccc---------cccccc-
Confidence            7788888888888874421       11111    0110000 00000           00000         000000 


Q ss_pred             cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC
Q 001358          776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH  854 (1092)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~  854 (1092)
                               ...|..+...-....+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++-+| 
T Consensus       255 ---------~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-  324 (481)
T KOG0300|consen  255 ---------KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-  324 (481)
T ss_pred             ---------ccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-
Confidence                     0111111111111225999999999999999999999 89999999999999999999999999999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCc-eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc
Q 001358          855 DNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM  933 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  933 (1092)
                      ..+++++.+.|.+.++||+... ..+..|+||++.|+++.|.-| ..+++++.|.+|+|||+..-.    .++.+.... 
T Consensus       325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATIRtd-  398 (481)
T KOG0300|consen  325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATIRTD-  398 (481)
T ss_pred             cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----CcceeeecC-
Confidence            8999999999999999999853 457899999999999999876 578899999999999998722    123333222 


Q ss_pred             CCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeee---eccCCCcCEEEEEEecCC--CEEEEEeCCCcEEEEEC
Q 001358          934 TLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQ---WFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       934 ~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~---~~~~h~~~v~~l~fs~dg--~~l~t~s~Dg~i~vwd~ 1007 (1092)
                         .++..++.+..+..||.- .+..|++||+......+.   -..+|..-|+|++|+.+-  .-|++++.|..+.=|++
T Consensus       399 ---S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  399 ---SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             ---CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence               358899999999999995 556799999975443322   245799999999998764  45899999999999998


Q ss_pred             CCC
Q 001358         1008 SNL 1010 (1092)
Q Consensus      1008 ~~~ 1010 (1092)
                      ...
T Consensus       476 n~p  478 (481)
T KOG0300|consen  476 NTP  478 (481)
T ss_pred             ccc
Confidence            754

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=8.4e-23  Score=230.39  Aligned_cols=248  Identities=12%  Similarity=0.172  Sum_probs=189.4

Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCc--------eeEEEecC
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH  484 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~  484 (1092)
                      |+.++.|++|+.....   ....+.+|.+.|.+++|+|+ +.  +|++|+.|++|+|||+.++.        ++..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            5567889999987653   34478899999999999997 56  89999999999999997642        34567899


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ...|.+++|+|.. ..++++++.|++|++||+++......+. +...|.+++|+|+|.+|++++.    ++.|++||+++
T Consensus       125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs  198 (568)
T PTZ00420        125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK  198 (568)
T ss_pred             CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence            9999999997753 2356799999999999999888766665 4568999999999999998875    66799999999


Q ss_pred             CeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCC----eEEEEECCC-CceEEEEeCCCCCCCCceEEEccCC
Q 001358          565 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++.+..+.+|.   +.+     ....|++++.++++++.++    +|++||+++ ++++..+..+.....+......++|
T Consensus       199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            99999999887   433     2334568999999988764    799999995 6667666555443323333334568


Q ss_pred             CEEEEEeCCCeEEEEECCCCCeeeecc-cccccceeeeecCC
Q 001358          635 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI  675 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~  675 (1092)
                      .++++|+.|+.|++|++..+.....-. .+..+..++++.|.
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence            899999999999999998763222111 13445556666654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5e-23  Score=199.35  Aligned_cols=298  Identities=13%  Similarity=0.164  Sum_probs=217.4

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      .+.+|+||+++|++++||.||+ .||+++.|++|+||++..-.....+.++               ..-.-+..+.++|+
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R---------------~nve~dhpT~V~Fa  141 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIR---------------QNVEYDHPTRVVFA  141 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhh---------------ccccCCCceEEEEC
Confidence            3468899999999999999999 5999999999999999874333221111               11122356789999


Q ss_pred             CCCCEEEEEe-CCCEEEEEEccCCCC---ccc------eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          406 PDGSLLGVAY-SKHIVQLYAYHGGSD---ARQ------QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       406 pdg~~las~~-~d~~i~iwd~~~~~~---~~~------~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ||-+-+++.. ...++++|.+...+.   ...      ..--+.|.-.|..+-...+++  ++.+++.|..|.+|++. |
T Consensus       142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k--~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK--YIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce--EEEEecCCCcEEEEecC-C
Confidence            9988776654 445799998753322   110      001124666777787777777  89999999999999988 9


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC--------CCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--------SLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +.+..+......-+..+.  +|+|+++++++.---|++|..-        .-...+.+.+|...|..++|+++.+++++.
T Consensus       219 q~L~~idtnq~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  219 QLLQSIDTNQSSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             ceeeeeccccccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence            999888766555555666  5688999999999999999752        223455788999999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCC-------eEEEEEe--eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358          548 GTSKEGESFLVEWNESEG-------AIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~-------~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.    ++.+++||..-.       +.++...  .+.. ......+.++|+++.|+... ...+.++..++|+....++.
T Consensus       297 Sk----DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~  370 (420)
T KOG2096|consen  297 SK----DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED  370 (420)
T ss_pred             ec----CCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH
Confidence            86    667999997522       2222221  1111 23344899999998776644 46799999999888776653


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          619 GGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      - +...|.+++|+++|++++++++ ..++++...
T Consensus       371 ~-h~~~Is~is~~~~g~~~atcGd-r~vrv~~nt  402 (420)
T KOG2096|consen  371 I-HSTTISSISYSSDGKYIATCGD-RYVRVIRNT  402 (420)
T ss_pred             h-hcCceeeEEecCCCcEEeeecc-eeeeeecCC
Confidence            2 2245899999999999999875 677776533

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.1e-20  Score=204.41  Aligned_cols=275  Identities=12%  Similarity=0.168  Sum_probs=231.2

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..|...-+.++|.|+|++|++++.||.|++|+.... +...   .+..+...|.+++..  +.  .|++|+.+++|.+|.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~   82 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK   82 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence            368899999999999999999999999999998876 3222   333477788887764  34  699999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ...++.-..+....-+++.+++  +.+|.+++.|+.|-.|++-++........+.+|..+|.++.|+|++++|++.+.  
T Consensus        83 fps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--  158 (933)
T KOG1274|consen   83 FPSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--  158 (933)
T ss_pred             CCCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--
Confidence            9988876666667788999999  557789999999999999999999999999999999999999999999999876  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeecccc-----CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCc
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                        +|.|++||+.++.+..++.+....     ...+..++|+|++..++..+.|+.|.+|+..+......+........+.
T Consensus       159 --dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~  236 (933)
T KOG1274|consen  159 --DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS  236 (933)
T ss_pred             --CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence              777999999999888777654321     2346778999999999999999999999999999998887665555588


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccccc
Q 001358          627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA  684 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  684 (1092)
                      .+.|+|+|+|||+++.+|.|.|||.++..    .......|.+++|.|+...+..-..
T Consensus       237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~  290 (933)
T KOG1274|consen  237 DLQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITA  290 (933)
T ss_pred             EEEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEee
Confidence            99999999999999999999999999721    1445667889999888776644333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=2.7e-23  Score=221.99  Aligned_cols=275  Identities=15%  Similarity=0.213  Sum_probs=221.6

Q ss_pred             ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeE-EE
Q 001358          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA  809 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~-~~  809 (1092)
                      .+|...|..+++.+.. .+++++.||++++|+-.....                      +-...+  .++.+-|.+ ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~~~--~~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETHAF--EGPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccceec--ccCcceeeccce
Confidence            4688889888876655 589999999999997432211                      110111  135555555 67


Q ss_pred             Eec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC
Q 001358          810 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  887 (1092)
Q Consensus       810 ~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~  887 (1092)
                      +.+ ++-.+++|+ |.++.+|......+...+.+|...|.++.... ++. +++|+.|.++++|..  +++...+.+|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            664 444466665 89999999999999999999999999999887 665 999999999999965  566777999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001358          888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1092)
Q Consensus       888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~  967 (1092)
                      .|+++++-|++ .++|||.|++|++|.-.+       .++++.+|..   .|+++++-+++.+|-++.||.|++|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999997 899999999999998755       7788889886   899999999999999999999999999 68


Q ss_pred             eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEE
Q 001358          968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047 (1092)
Q Consensus       968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~ 1047 (1092)
                      +++.. ..+|+.-|.++....++..++++++|+++++|+..  ++.+.+.    +|..    .+++  +.+-+  +.-++
T Consensus       210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPtt----siWs--a~~L~--NgDIv  274 (745)
T KOG0301|consen  210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPTT----SIWS--AKVLL--NGDIV  274 (745)
T ss_pred             ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCcc----ceEE--EEEee--CCCEE
Confidence            88877 66899999999999999999999999999999988  5555554    2332    3443  33332  35699


Q ss_pred             EEeCCCcEEEEecC
Q 001358         1048 VGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1048 ~~~~dg~v~~w~~~ 1061 (1092)
                      +|+.||.||||-..
T Consensus       275 vg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVD  288 (745)
T ss_pred             EeccCceEEEEEec
Confidence            99999999999875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.8e-21  Score=209.65  Aligned_cols=516  Identities=16%  Similarity=0.184  Sum_probs=326.8

Q ss_pred             ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCc-cEEEEEecCCeEEEEE
Q 001358          437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWL  515 (1092)
Q Consensus       437 l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd  515 (1092)
                      +.|-...-....||+|++.  ++.+. +..|.||...||.++..+.+|..++.++.+.+.... .++++++.||.|++||
T Consensus        12 lgg~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd   88 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD   88 (792)
T ss_pred             eccccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEec
Confidence            3344444445689999994  44333 568999999999999999999999999999887664 6788999999999999


Q ss_pred             cCCCCceEEecCCCCceEEEEEec---CCCEEEEEecCCCCceeEEEEeCCCCeEEE-----EEeeccc----cCCceEE
Q 001358          516 YDSLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIKR-----TYQGLQL----QHNSVSV  583 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-----~~~~~~~----~~~~v~~  583 (1092)
                      +.......++.... ++..+.+.|   +-...+..+.  +....+...........+     ++..+..    ....-..
T Consensus        89 ~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~  165 (792)
T KOG1963|consen   89 WSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKS  165 (792)
T ss_pred             CCCcEEEEEEecCC-ceeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCcc
Confidence            99888777665543 233333322   1111221111  001111111111111111     1111110    0011355


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-e-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-D-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      +.+++.+.+....-. ..+.+|+..++...... . ...+...+++.+++|+++++|++..||.|.+|.--..      .
T Consensus       166 I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~  238 (792)
T KOG1963|consen  166 IVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------S  238 (792)
T ss_pred             EEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------c
Confidence            677777766655544 56888888775511111 0 1122234789999999999999999999999974421      0


Q ss_pred             cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEE
Q 001358          662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  741 (1092)
Q Consensus       662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~  741 (1092)
                      .                                           .+-+.++|.-                 |...|.+++
T Consensus       239 ~-------------------------------------------~~~t~t~lHW-----------------H~~~V~~L~  258 (792)
T KOG1963|consen  239 D-------------------------------------------DSETCTLLHW-----------------HHDEVNSLS  258 (792)
T ss_pred             c-------------------------------------------ccccceEEEe-----------------cccccceeE
Confidence            0                                           0011111111                 667899999


Q ss_pred             EecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001358          742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS  821 (1092)
Q Consensus       742 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s  821 (1092)
                      |+++|.+|++|+..|.+.+|.+..++.                      ..   ++  .-..+|..+.+|||+.+.+...
T Consensus       259 fS~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  259 FSSDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             EecCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEe
Confidence            999999999999999999998765421                      11   11  2577899999999999887775


Q ss_pred             -CCeEEEEEcCCceeeEEecCC-----------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec------
Q 001358          822 -GGVISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------  883 (1092)
Q Consensus       822 -dg~i~iwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------  883 (1092)
                       |+.|.+....+.....++.+.           .+-.+.++++| ..+.++..+..|.|.+||+-+.+.+..+.      
T Consensus       312 ~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~  390 (792)
T KOG1963|consen  312 EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY  390 (792)
T ss_pred             cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecc
Confidence             899998887666554444332           23457889999 67788888999999999998876554442      


Q ss_pred             -----cccCCeEEEEEcCCCCEEEEEeC--------CC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358          884 -----GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       884 -----~h~~~V~~l~~spdg~~l~s~s~--------Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                           .+.-.+++++.+-.|.+++|.-.        ||  .+++|-...........-.....|..  ..+..+.+++..
T Consensus       391 ~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~r  468 (792)
T KOG1963|consen  391 SDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTR  468 (792)
T ss_pred             cCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcc
Confidence                 13345888889999999998732        33  47889887654332221122222221  123333344433


Q ss_pred             C-EEEE-EeCCcEEEEEcCCce----------eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceEEe
Q 001358          949 T-RFLL-VHETHLAIYEAEELT----------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCR 1015 (1092)
Q Consensus       949 ~-~la~-~~d~~v~lwd~~~~~----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~-~~~~~~ 1015 (1092)
                      . ..++ +.|+.++||-....+          |... -.-|..++++++||.||..|+ ++.|++|.+||..+ .++.+.
T Consensus       469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~  546 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCT  546 (792)
T ss_pred             cceeEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcc
Confidence            3 5555 689999999884322          2111 123689999999999997666 55788999999999 555555


Q ss_pred             eccccccCCCCccCcccceEE-EECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001358         1016 ILSTAYLRPTTSCLHVYPHAI-AAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus      1016 ~~~~~~~~~~~~~~~v~~~~~-~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
                      .....+.        +...+. +-.+  ....+.....+.+.+|++......|
T Consensus       547 ~~~~~~~--------~~~~~~~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  547 EGSRNWP--------IAELLFTAQTQ--NDGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             ccccccc--------hHhHhhhcccc--cccceeeccCceEehHhhhhhheec
Confidence            5422211        111111 1122  2344555677899999999888888

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=2.6e-23  Score=212.89  Aligned_cols=287  Identities=13%  Similarity=0.175  Sum_probs=229.2

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .|.+-|.++++|...+ .+.+|+. |.|+|||+.......              +....-.-....-|.++.++|||+.|
T Consensus       417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL  480 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL  480 (705)
T ss_pred             ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence            5776888999999887 5788876 889999997542111              00000022345789999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      ++|+.-.++.|||+.....- ...++..-.-...+++.+||.+  +.++|..||.|.|||+.....++.|+||.+.+.||
T Consensus       481 ivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI  557 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  557 (705)
T ss_pred             EeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence            99999999999999875422 1123433444678899999999  88999999999999999999999999999999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      .+  +.||..|.+|+-|.+||.||++.+........ ...|.++.+.|.+.+++++-.    ++.+.+.... +.....+
T Consensus       558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyql  629 (705)
T KOG0639|consen  558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQL  629 (705)
T ss_pred             Ee--cCCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceee
Confidence            88  56889999999999999999998776655432 347889999999999999976    4446666543 3333444


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      .-|+   ..|.++.|.+.|+++++.+.|+-+..|...-|..+......   +.|.++..+.|.+++++|+.|....+|.+
T Consensus       630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence            4444   89999999999999999999999999999988877766533   46899999999999999999988888864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=3.5e-23  Score=211.88  Aligned_cols=282  Identities=12%  Similarity=0.172  Sum_probs=224.2

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      |..-|.++++|...+.+++++. |.|+|||+.....                   ...+...+.  ....+-|+++.+.|
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~PvsqLdc--l~rdnyiRSckL~p  475 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPVSQLDC--LNRDNYIRSCKLLP  475 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCccccccc--cCcccceeeeEecC
Confidence            7788889999999998877765 6899999865311                   001111111  12567789999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcCCceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCe
Q 001358          813 NDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  889 (1092)
Q Consensus       813 dg~~l~~~sd-g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V  889 (1092)
                      ||+.|++|+. .++.|||+......  ..+........+++.+| |.++.++++.||.|.|||+.+...+..|+||.+.+
T Consensus       476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa  554 (705)
T KOG0639|consen  476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  554 (705)
T ss_pred             CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence            9999999986 78999999865432  33443445678899999 89999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCce
Q 001358          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT  968 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~  968 (1092)
                      .||.+++||..|.||+-|.+||-||+..+....     ...    +...|.++..+|.+.+|++| .++.+.|......+
T Consensus       555 scIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~  625 (705)
T KOG0639|consen  555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE  625 (705)
T ss_pred             eeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhh----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence            999999999999999999999999999865222     111    12368999999999999997 45678888776444


Q ss_pred             eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001358          969 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1048 (1092)
Q Consensus       969 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~ 1048 (1092)
                      .-.  +.-|...|.++.|++.|+++++.+.|.-+-.|...-|..+....         -.+.|.+++++++   ..+++|
T Consensus       626 kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIVT  691 (705)
T KOG0639|consen  626 KYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIVT  691 (705)
T ss_pred             cee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEEe
Confidence            332  45689999999999999999999999999999999997764433         2456777777766   589999


Q ss_pred             EeCCCcEEEEec
Q 001358         1049 GLTNGEVYVIEP 1060 (1092)
Q Consensus      1049 ~~~dg~v~~w~~ 1060 (1092)
                      |+.|..-.||.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            999998888876

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.7e-23  Score=193.16  Aligned_cols=256  Identities=16%  Similarity=0.211  Sum_probs=206.2

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      ..-.+|.+-|..+...--|+ .||+++.|++|+|+.+..+.....                ...|.||+++|..++|.. 
T Consensus         5 ~idt~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahP   67 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHP   67 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeeccc
Confidence            34468999999999999998 489999999999999987764221                112899999999999987 


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEe
Q 001358          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFE  482 (1092)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~  482 (1092)
                       -|.+||+++.||.|.||.-++| ...+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++.   ...+...
T Consensus        68 k~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~  146 (299)
T KOG1332|consen   68 KFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF  146 (299)
T ss_pred             ccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh
Confidence             8999999999999999999988 4445557778999999999999988889999999999999987654   2224456


Q ss_pred             cCCcceEEEeecccCC-c-----------cEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEecCC----CEE
Q 001358          483 GHGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRL  544 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg----~~l  544 (1092)
                      .|.-.|+++++.|..- |           +.|++|+.|..|+||+.+...-  ...+..|...|+.++|.|.-    .+|
T Consensus       147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i  226 (299)
T KOG1332|consen  147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI  226 (299)
T ss_pred             ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence            7999999999987521 1           5799999999999999987632  23478899999999999964    468


Q ss_pred             EEEecCCCCceeEEEEeCCCC--eEE-EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358          545 FSCGTSKEGESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      ++|+.    ++.+.||-....  ... ..+....   ..+..+.|++.|+.|++++.|+.|.+|.-.
T Consensus       227 AS~Sq----Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  227 ASCSQ----DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEecC----CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            88876    667999976521  111 1222223   679999999999999999999999999754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=4.1e-21  Score=210.82  Aligned_cols=289  Identities=11%  Similarity=0.054  Sum_probs=212.3

Q ss_pred             EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEccC
Q 001358          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~~  427 (1092)
                      ++++++.|+.|.+||+.+++.+..                   +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            788999999999999999886654                   3333 346789999999987 5667789999999998


Q ss_pred             CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec
Q 001358          428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV  507 (1092)
Q Consensus       428 ~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~  507 (1092)
                      ++...   .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++  +++.++++++.
T Consensus        63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~  134 (300)
T TIGR03866        63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE  134 (300)
T ss_pred             CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence            86544   3434433 567899999984 345566789999999999888877753 2345677774  57788888887


Q ss_pred             CC-eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceE
Q 001358          508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS  582 (1092)
Q Consensus       508 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~  582 (1092)
                      ++ .+.+||..+......... ......++|+|+|+++++++.   .++.|++||..+++.+..+..+..    ......
T Consensus       135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV  210 (300)
T ss_pred             CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence            65 467789877655443322 234567899999998876542   256799999999988776653210    011235


Q ss_pred             EEEEcCCCCEEEE-EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCCeeeec
Q 001358          583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       583 ~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      .+.|+|+++++++ .+.++.+.+||..+++....+...   ..+.+++|+|+|++|+++ ..++.|.+||..+++.+..+
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            6889999998655 455678999999998887665432   247899999999999886 45899999999999888877


Q ss_pred             ccccccceeeeec
Q 001358          661 GVLSDNLRKLSVN  673 (1092)
Q Consensus       661 ~~~~~~v~~~~~~  673 (1092)
                      ... ...+.++++
T Consensus       288 ~~~-~~~~~~~~~  299 (300)
T TIGR03866       288 KVG-RLPWGVVVR  299 (300)
T ss_pred             Ecc-cccceeEeC
Confidence            643 333555544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=194.06  Aligned_cols=300  Identities=14%  Similarity=0.188  Sum_probs=223.5

Q ss_pred             CCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      .+|.....+|....  -.|+.||+.|. +||+|..||.|.|||+.|-..-+.                   +.+|..+|+
T Consensus        12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~   69 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT   69 (405)
T ss_pred             cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence            45666667776443  78999999998 799999999999999998765543                   889999999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +++||+||+.|+++|.|..|.+||+..|.+++++    ....+|+.+.|+|-.....++ +-.+..-.+-++..++....
T Consensus        70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~L  144 (405)
T KOG1273|consen   70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVL  144 (405)
T ss_pred             EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeec
Confidence            9999999999999999999999999999877643    256789999999987763444 43444455555544322111


Q ss_pred             EecCCcceEEE--eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          481 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       481 ~~~~~~~v~~i--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      -....+..+..  +-..++.|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|++++..+.    +..|
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI  220 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI  220 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence            11111111111  11235677899999999999999999998888776655 68999999999999999876    7789


Q ss_pred             EEEeCCCC-------eE--EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          558 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       558 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.|+.+.-       +.  .+.++..- ..-.-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....
T Consensus       221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D  298 (405)
T KOG1273|consen  221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD  298 (405)
T ss_pred             EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence            99987621       11  11121111 123456789999999998876 456799999999999999987654 34678


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +.|+|-...+++. ..|.++||.....
T Consensus       299 V~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  299 VNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             cccccceeeeeec-cCCceEEEEeecc
Confidence            8999988777777 6799999987643

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=204.16  Aligned_cols=289  Identities=15%  Similarity=0.227  Sum_probs=224.0

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001358          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES  654 (1092)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .+.|+++.|+|....+++++.|++++||.+...  ..++.+...  ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            478999999999999999999999999987643  344555443  34688999999998 8888888888888988754


Q ss_pred             CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccc
Q 001358          655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  734 (1092)
Q Consensus       655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  734 (1092)
                      +.....+                                                                         
T Consensus       291 k~~k~~~-------------------------------------------------------------------------  297 (514)
T KOG2055|consen  291 KVTKLKP-------------------------------------------------------------------------  297 (514)
T ss_pred             ccccccC-------------------------------------------------------------------------
Confidence            2211000                                                                         


Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                                                                         ..|.           ....+....+|+++
T Consensus       298 ---------------------------------------------------~~g~-----------e~~~~e~FeVShd~  315 (514)
T KOG2055|consen  298 ---------------------------------------------------PYGV-----------EEKSMERFEVSHDS  315 (514)
T ss_pred             ---------------------------------------------------CCCc-----------ccchhheeEecCCC
Confidence                                                               0000           12334566778888


Q ss_pred             CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC-CeEEE
Q 001358          815 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGL  892 (1092)
Q Consensus       815 ~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l  892 (1092)
                      ++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|++.+.+|.|.+||+....++.++....+ .-+++
T Consensus       316 ~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~  393 (514)
T KOG2055|consen  316 NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL  393 (514)
T ss_pred             CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence            8888877 5888888888888888877 567899999998 889999999999999999999999988874222 23568


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCce-eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE---eCCcEEEEEcCCce
Q 001358          893 VFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELT  968 (1092)
Q Consensus       893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~---~d~~v~lwd~~~~~  968 (1092)
                      +.|++|.+||+||..|.|-|||.++--. ...+++.....-.   ..|++++|++|+++||.+   ..+.+++-.+.+..
T Consensus       394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence            8889999999999999999999765211 1122333333333   379999999999999984   56789999999888


Q ss_pred             eeeeeccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      ....|....  -+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus       471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            877765443  5789999999999999999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=8.5e-23  Score=208.76  Aligned_cols=264  Identities=17%  Similarity=0.261  Sum_probs=211.1

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CC
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  408 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  408 (1092)
                      .-.|.++|+.+.+-|....++|+++..+.|.|||...-.-.....      +.|.   ....|.||+..=..++|++ ..
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~------~~~~---Pdl~L~gH~~eg~glsWn~~~~  190 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS------GECR---PDLRLKGHEKEGYGLSWNRQQE  190 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc------ccCC---CceEEEeecccccccccccccc
Confidence            346888999999999998899999999999999987643322100      0011   1123888998888899999 45


Q ss_pred             CEEEEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE  482 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~  482 (1092)
                      -+|++++.|++|++||+.....    +.....+.+|...|..++|++-... ++++++.|+.+.|||++  +.++.+...
T Consensus       191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~  269 (422)
T KOG0264|consen  191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVK  269 (422)
T ss_pred             eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCccccc
Confidence            6888999999999999985443    5556678899999999999998776 79999999999999999  566677889


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEE-EEecCCCCceeEEEE
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLF-SCGTSKEGESFLVEW  560 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~~~~~i~iw  560 (1092)
                      +|.++|++++|+|.. +.+||+|+.|++|.+||+++... ...+..|...|..+.|||....++ +++.    ++.+.+|
T Consensus       270 ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl~vW  344 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRLNVW  344 (422)
T ss_pred             ccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcEEEE
Confidence            999999999999874 67999999999999999998654 668899999999999999876554 4443    7789999


Q ss_pred             eCCCCeEE-----------EEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECC
Q 001358          561 NESEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN  608 (1092)
Q Consensus       561 d~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~  608 (1092)
                      |+..-...           ..+-.|..|...|..+.|+|+..++++ .++|+.+.||.+.
T Consensus       345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            98643222           122334444589999999999988755 7899999999976

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.7e-22  Score=204.38  Aligned_cols=288  Identities=14%  Similarity=0.215  Sum_probs=233.4

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC-EEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG  412 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~la  412 (1092)
                      .+.|++|.|+|.-. +|.+|+.|++++||.++........+                 +.-...+|.+.+|.|+|. .++
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~  274 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF  274 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence            34999999999998 89999999999999997643222111                 222457999999999999 889


Q ss_pred             EEeCCCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      +++....++.||+++.+..+ +..+.++. ..+.....|++++  +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus       275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF  350 (514)
T ss_pred             ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence            99999999999999977543 22344554 3577888999999  89999999999999999999999987 66789999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC------
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------  564 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------  564 (1092)
                      +|+  .+++.|++.+.+|.|.+||++...+...+...+. .-+++|.+++|.++++|+.    .|.|.|||..+      
T Consensus       351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence            995  5779999999999999999999988887765554 4578899999999999976    67799999653      


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEe
Q 001358          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      .+++..+....   ..|.++.|+++.+.|+.+|  ....+++-++.+......++.. .....|+|++|+|.+.++|+|.
T Consensus       425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            34455555544   6899999999999988877  5678999998887766655543 2344689999999999999999


Q ss_pred             CCCeEEEEECC
Q 001358          642 NENRIKILETP  652 (1092)
Q Consensus       642 ~dg~i~iw~~~  652 (1092)
                      .+|.+.+|.+.
T Consensus       502 e~grv~l~kL~  512 (514)
T KOG2055|consen  502 EAGRVHLFKLH  512 (514)
T ss_pred             CCCceeeEeec
Confidence            99999999864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.90  E-value=1e-20  Score=207.59  Aligned_cols=279  Identities=18%  Similarity=0.237  Sum_probs=202.4

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCCeeeeccccccccee
Q 001358          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~  669 (1092)
                      ..+++++.|+.+++||+.+++.+..+..+.   .+..++|+|+++.+ ++++.++.|++||..+++....+.        
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------   70 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------   70 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence            467888999999999999999888887543   35789999999876 556678899999877542211100        


Q ss_pred             eeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEE
Q 001358          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  749 (1092)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (300)
T TIGR03866        71 --------------------------------------------------------------------------------   70 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEE
Q 001358          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL  827 (1092)
Q Consensus       750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~i  827 (1092)
                                                                         ....+..++++|+++.++++.  ++.+++
T Consensus        71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~   99 (300)
T TIGR03866        71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV   99 (300)
T ss_pred             ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence                                                               000123466777877665543  578999


Q ss_pred             EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE-e
Q 001358          828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G  905 (1092)
Q Consensus       828 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s  905 (1092)
                      ||+.+.+.+..+.. ...+.+++|+| ++.++++++.++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus       100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence            99988877776653 33467899999 899999888775 567889998877665542 3346789999999988544 4


Q ss_pred             CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCceeeeeeccCCCcCEEE
Q 001358          906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ  983 (1092)
Q Consensus       906 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~  983 (1092)
                      .++.|++||+.+++............+.. ......++|+|||+++++  +.++.+.+||..+++.+....  +...+.+
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~  253 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ  253 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence            69999999999875433211111110000 112457899999998655  456789999999888776543  3457899


Q ss_pred             EEEecCCCEEEEE-eCCCcEEEEECCCCceEEeec
Q 001358          984 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       984 l~fs~dg~~l~t~-s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ++|+|||++|+++ +.+|.|.+||+.+++.+.++.
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9999999999876 468999999999999988886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.6e-22  Score=205.26  Aligned_cols=293  Identities=15%  Similarity=0.212  Sum_probs=230.8

Q ss_pred             EEEEEcCcC-cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC-CCcEEEEEECCCCCEEEEEeC-CCEEEEEEc
Q 001358          349 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY  425 (1092)
Q Consensus       349 llasg~~d~-~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~las~~~-d~~i~iwd~  425 (1092)
                      ++.+++.|. ++.+||+.||....++                   ++. ...-.++..- .+.|++++.. ...+.+|.+
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~y-------------------kg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i   68 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQY-------------------KGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEI   68 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEEe-------------------cCcccccchhhhhh-chhheeeecccCcccccccc
Confidence            344555554 4999999999876542                   111 0111111111 2467777743 457999999


Q ss_pred             cCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEE
Q 001358          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1092)
Q Consensus       426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~  505 (1092)
                      .......+..   --.++|.+++-+|+|.  +|+.|+..+.|++|.+.+|..+..+.+|-..|+++.|  +.||.+|++|
T Consensus        69 ~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg  141 (476)
T KOG0646|consen   69 LKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG  141 (476)
T ss_pred             Cchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence            8655444221   2456899999999998  7888879999999999999999999999999999999  5688999999


Q ss_pred             ecCCeEEEEEcC---------CCCceEEecCCCCceEEEEEecCC--CEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358          506 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       506 ~~dg~i~vwd~~---------~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      +.||.|.+|++.         +..+...+..|.-+|+.+...+.|  .++++++.    |.++++||+..|.++.++...
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp  217 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP  217 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence            999999999763         334566788888899999887653  57888876    778999999999999888764


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------ceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                          ..+.+++..|.+..+++|+++|.|.+.++..-                ..+..+.+|.....|+|++.+-||.+|+
T Consensus       218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence                48999999999999999999999999876542                2334455555545899999999999999


Q ss_pred             EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                      +|+.||.+.|||..+.+.++++....++|+.+.+.|..
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            99999999999999999999988888999999987653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=8.7e-22  Score=188.70  Aligned_cols=321  Identities=13%  Similarity=0.192  Sum_probs=233.2

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CC
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  408 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg  408 (1092)
                      .+.|.+.|..+...|...+++.+|+.||.|.|||++.......--+ +-+ ..|.  ....--.+|.-.|..+.|-| |.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecC
Confidence            3568899999999987666899999999999999987542110000 000 0111  12223567899999999999 77


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCC-cEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~-~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      -.+.+++-|.+++|||.++-+...   .+ ...+.|.+-++||-.. .-++++|..|-.|++-|+.+|..-+++.||.+.
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             ceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            788899999999999999864332   33 2556788888888543 226788888899999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      |.++.|+|..+ -.|++|+.||.|++||++...                                  +..++.|..+++.
T Consensus       191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRras----------------------------------gcf~~lD~hn~k~  235 (397)
T KOG4283|consen  191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRAS----------------------------------GCFRVLDQHNTKR  235 (397)
T ss_pred             eEEEEeccCce-eEEEecCCCceEEEEEeeccc----------------------------------ceeEEeecccCcc
Confidence            99999998754 689999999999999987421                                  1133444443333


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC----CCCCCCceEEEccCCCEEEEEeCC
Q 001358          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----GGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      ...++....|.+.|..++|+.++.++++.+.|..+++|+..+|+....-.++    .....-..+. +.+...++.--.+
T Consensus       236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~  314 (397)
T KOG4283|consen  236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPND  314 (397)
T ss_pred             CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecC
Confidence            3333322334489999999999999999999999999999987653322111    0000001122 3345556656667


Q ss_pred             CeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       644 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      +.+.++++.++..+..+..|...+.|.++.                      |+-+...++..|+.+..|-..
T Consensus       315 ~~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  315 GSLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             CeEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence            999999999999999999998888877775                      566777888888888888753

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.7e-21  Score=189.11  Aligned_cols=270  Identities=14%  Similarity=0.111  Sum_probs=211.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ....|+++.|+|.+..|++++.||.+++||+...+...   . -.|..++.+++|.++.+   +++|+.||.|+.+|+.+
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---~-~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---K-FKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---h-eecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence            57899999999999999999999999999999875433   2 25899999999998765   99999999999999999


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      +.... +..|..+|.++...+..  ..+++|+.|++|++||.+.......+...+ .|.++.  -.|..|++++.    +
T Consensus        85 ~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~--v~g~~LvVg~~----~  154 (323)
T KOG1036|consen   85 GNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD--VSGNRLVVGTS----D  154 (323)
T ss_pred             Cccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEe--ccCCEEEEeec----C
Confidence            87654 44699999999987543  479999999999999998754444444433 666554  45677888765    5


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEeCCCC-------CC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP  623 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~----~~~~~~~~~~~-------~~  623 (1092)
                      ..+.+||+++........... -...+.++++.|++.-+++++-||.|.+=.++..    +....+..|..       .-
T Consensus       155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            679999998765543221111 1357899999999889999999999988655544    33334444421       12


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccc
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  682 (1092)
                      +|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence            58999999999999999999999999999999999998888889999998665555443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.4e-22  Score=191.10  Aligned_cols=282  Identities=15%  Similarity=0.222  Sum_probs=214.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      -.|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999976444   6789999999999999999  8999999999999999999999


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----ceEEEEEecCCCEEEEEecCCCCc
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      +.+. ...+|..+.|+|......+++--... -.+-++........-....+    ...+..|.+.|+++++|..    .
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K  174 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K  174 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence            9987 78899999999987766665544333 44445554222221111111    1223468899999999975    7


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------eE--EEEeCCCCCCCC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-------LL--TTIDAGGGLPEN  625 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-------~~--~~~~~~~~~~~v  625 (1092)
                      |.+.++|..+-+++..++-..  ...|..+.++..|..++.-+.|..||.|+...-.       ..  +.+..--....-
T Consensus       175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            789999999999998887654  4679999999999999999999999999876311       10  111100011234


Q ss_pred             ceEEEccCCCEEEEEeC-CCeEEEEECCCCCeeeeccccc-ccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358          626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      .+++|+.+|.+++.++. ...++||....|..++.+.|.. .....+.+.|....                      +++
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s  310 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS  310 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence            68999999999988775 5789999999999999999887 55666777654332                      223


Q ss_pred             eccccccceecee
Q 001358          704 VEAENKSEVEKPL  716 (1092)
Q Consensus       704 ~~~d~~i~~w~~~  716 (1092)
                      - ..|.+.+|...
T Consensus       311 i-~sg~v~iw~~~  322 (405)
T KOG1273|consen  311 I-ASGVVYIWAVV  322 (405)
T ss_pred             c-cCCceEEEEee
Confidence            2 56889999854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=1e-20  Score=200.14  Aligned_cols=450  Identities=14%  Similarity=0.143  Sum_probs=289.5

Q ss_pred             ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce
Q 001358          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR  522 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~  522 (1092)
                      .|..++|-|||.+++++.   +..+.+||...|..++++++|.+.|+++++  +.||+.+++|+.|+.|.+|.-..... 
T Consensus        14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~-   87 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI-   87 (1081)
T ss_pred             chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence            799999999999744433   347999999999999999999999999999  56889999999999999996543222 


Q ss_pred             EEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeE
Q 001358          523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI  602 (1092)
Q Consensus       523 ~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i  602 (1092)
                      . --.|...|.++.|+|-...|++|+-+.     .-+|........+ .+.    ...+.+++|..||++++.|-.+|+|
T Consensus        88 L-kYSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   88 L-KYSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             e-eeccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence            2 234777899999999999999998542     5678765443321 111    2468899999999999999999999


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCC-----CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcc
Q 001358          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST  677 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  677 (1092)
                      .+-+......+..-...+...+|.+++|+|..     ..+++.....++.++.+.. +.+..-+...-.-.|+.+     
T Consensus       157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisY-----  230 (1081)
T KOG1538|consen  157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISY-----  230 (1081)
T ss_pred             EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhhee-----
Confidence            99875444444333334556789999999953     3677777777777776653 233322222222223333     


Q ss_pred             cccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCe
Q 001358          678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  757 (1092)
Q Consensus       678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~  757 (1092)
                                       -++|.+++.|+.|+.+.+|..+.-.      +..- ......|..++..|+++.++.|..||+
T Consensus       231 -----------------f~NGEy~LiGGsdk~L~~fTR~Gvr------LGTv-g~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  231 -----------------FTNGEYILLGGSDKQLSLFTRDGVR------LGTV-GEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             -----------------ccCCcEEEEccCCCceEEEeecCeE------Eeec-cccceeEEEEEEccCCceEEEEEccCe
Confidence                             3788999999999999988743111      1000 114568999999999999999999999


Q ss_pred             eEEeeecCCcccc---------------------Ccc---------------------cccccCCccccCCCCCceeeec
Q 001358          758 HLMWRWPRNDLTL---------------------STE---------------------ATTKVPPRLYQPRHGPQFMVND  795 (1092)
Q Consensus       758 i~lw~~~~~~~~~---------------------~~~---------------------~~~~~~~~~~~~~~~~~~~~~~  795 (1092)
                      +-.|++-......                     .+.                     .+....+.+|...++. .....
T Consensus       287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~-~~~mh  365 (1081)
T KOG1538|consen  287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSED-LSDMH  365 (1081)
T ss_pred             eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccc-cccch
Confidence            9999876543200                     000                     0000112222222211 00000


Q ss_pred             CCCCC-CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358          796 TTDSN-SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       796 l~~~~-~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                      .+... -.....|--+--.+..++.+.+..+..+|...-+.        ++.++.-.        .|.+..-|+.|..||
T Consensus       366 Y~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~G--------GP~gREgL~vGlknG  437 (1081)
T KOG1538|consen  366 YRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIG--------GPPGREGLLVGLKNG  437 (1081)
T ss_pred             hHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhc--------CCCCcceeEEEecCC
Confidence            00000 00000111111123455555566677777653211        11111111        122566788899998


Q ss_pred             eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358          867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  946 (1092)
                      .|.-.=+++.-++.... ....|.|+.++...+.||+..+.++..++|+.+++.    .++.+        .+.+++|+.
T Consensus       438 qV~kiF~dN~~PiLl~~-~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~wNT  504 (1081)
T KOG1538|consen  438 QVLKIFVDNLFPILLLK-QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVAWNT  504 (1081)
T ss_pred             cEEEEEecCCchhheec-ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEEeec
Confidence            76544355443333333 456799999999999999999999999999999763    23332        477899988


Q ss_pred             CCCEEEE-EeCCcEEE
Q 001358          947 DQTRFLL-VHETHLAI  961 (1092)
Q Consensus       947 dg~~la~-~~d~~v~l  961 (1092)
                      ...-+.+ +..|.+.|
T Consensus       505 ~~E~MlcfT~~g~L~V  520 (1081)
T KOG1538|consen  505 QCEDMLCFTGGGYLNV  520 (1081)
T ss_pred             cccceEEEecCCceEE
Confidence            7655544 55565544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=4.4e-21  Score=183.95  Aligned_cols=306  Identities=14%  Similarity=0.174  Sum_probs=217.8

Q ss_pred             cccccEEEEEEec-CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358          732 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       732 ~~~~~i~~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      .|.+.|+++.+.+ .|+++++++.||.+-+||++............          ...|+... -...+|...|..+.|
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~----------k~~c~v~~-~h~~~Hky~iss~~W  109 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA----------KHKCIVAK-QHENGHKYAISSAIW  109 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee----------heeeeccc-cCCccceeeeeeeEE
Confidence            4889999999877 68999999999999999997654211111100          01111111 112358999999999


Q ss_pred             ecCC-CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCceeeEeecccc
Q 001358          811 SKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHS  886 (1092)
Q Consensus       811 s~dg-~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~  886 (1092)
                      -|-. ..+.+++ |.++++||.++.+....|. -.+.|.+-++||-  ...++|+|..|-.|++.|+.+|.....+.||.
T Consensus       110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr  188 (397)
T KOG4283|consen  110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR  188 (397)
T ss_pred             eeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc
Confidence            8844 4445555 8999999999998888876 5567777777772  13488899999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCce--ee-----eeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001358          887 KRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGI--QT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  957 (1092)
Q Consensus       887 ~~V~~l~~spdg~~-l~s~s~Dg~i~iwd~~~~~~--~~-----~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~  957 (1092)
                      +.|.++.|||...+ |++|+.||.|++||+..-..  ..     .+..+..+....+.+.+..++|+.||.++++ +.|.
T Consensus       189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~  268 (397)
T KOG4283|consen  189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD  268 (397)
T ss_pred             CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence            99999999998765 78999999999999976310  00     0111111112223358999999999999998 8999


Q ss_pred             cEEEEEcCCceeeeeecc--CCC---cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCccc
Q 001358          958 HLAIYEAEELTCLKQWFP--ISS---VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVY 1032 (1092)
Q Consensus       958 ~v~lwd~~~~~~~~~~~~--~h~---~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 1032 (1092)
                      .+++|+..+|+.-...+.  .|.   +.-..+. +.+...++---.|+++.++.+-.|..+.++..        |...+ 
T Consensus       269 r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--------h~k~i-  338 (397)
T KOG4283|consen  269 RIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--------HLKRI-  338 (397)
T ss_pred             ceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--------cccee-
Confidence            999999988764322111  121   1111133 44555555555678999999999999988872        22222 


Q ss_pred             ceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1033 PHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1033 ~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                       .|.++.| +=+...+|..|+.+..|-..
T Consensus       339 -~c~~~~~-~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  339 -NCAAYRP-DFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             -eEEeecC-chhhhhccccCCcccccccc
Confidence             3666777 35779999999999999873

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=199.73  Aligned_cols=225  Identities=16%  Similarity=0.177  Sum_probs=190.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--
Q 001358          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--  473 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--  473 (1092)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +++|||.||.|.+|++.  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence            3689999999999999999999999999999998877   5679999999999999999  89999999999999753  


Q ss_pred             -------CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358          474 -------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       474 -------~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                             +-++++.|..|.-+|+++...+.+-..+++|+|.|.++++||+..+.....+..+ ..+.+++.+|-++.+++
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi  234 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI  234 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence                   3467889999999999999877666679999999999999999998777666544 47899999999999999


Q ss_pred             EecCCCCceeEEEEeCCC----------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358          547 CGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      |+.    ++.|.+.++..                +..+..+.||. ....|+|++++-||..|++|+.||.|+|||+.+.
T Consensus       235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cCC----cceEEeeehhcCCcccccccccccccccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            976    55677665432                23456677777 1138999999999999999999999999999999


Q ss_pred             ceEEEEeCCCCCCCCceEEEccC
Q 001358          611 QLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ++++++...  ..+|+.+.+.|-
T Consensus       310 Q~iRtl~~~--kgpVtnL~i~~~  330 (476)
T KOG0646|consen  310 QCIRTLQTS--KGPVTNLQINPL  330 (476)
T ss_pred             HHHHHHhhh--ccccceeEeecc
Confidence            999888732  345888888663

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2.1e-21  Score=203.65  Aligned_cols=322  Identities=12%  Similarity=0.166  Sum_probs=244.7

Q ss_pred             cccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358          318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      ....+|..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+                    .+
T Consensus       384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d~  442 (733)
T KOG0650|consen  384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------DS  442 (733)
T ss_pred             hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------cc
Confidence            345567788899999999999999999998 699999999999999999999986442                    35


Q ss_pred             cEEEEEECCCCC--EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEE----EeCCCcEEEEE
Q 001358          398 SVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT----CGDDKTIKVWD  471 (1092)
Q Consensus       398 ~V~~l~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s----~~~d~~i~vwd  471 (1092)
                      .|.|++|+|.+.  .||++-... +.|-+..-|..+...     .+           ..  .|++    ...|+.+..|.
T Consensus       443 ~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~-----~t-----------~e--ll~~~~~~~~p~~~~~~W~  503 (733)
T KOG0650|consen  443 EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVG-----PT-----------KE--LLASAPNESEPDAAVVTWS  503 (733)
T ss_pred             eeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhc-----ch-----------hh--hhhcCCCccCCcccceeec
Confidence            899999999664  556654444 666666555322210     00           00  1111    12355778886


Q ss_pred             CCCC----ceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358          472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1092)
                      -...    .-++..-.|...|..+.|+.  .|.+|++...+   ..|.|.++........+....+.+.++.|+|...+|
T Consensus       504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l  581 (733)
T KOG0650|consen  504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL  581 (733)
T ss_pred             hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence            4421    12344556999999999965  56799987664   458899998877777777777889999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEeCCCCCC
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLP  623 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~-~~~~~~~~~~~~~  623 (1092)
                      ++++     ...|++||+..+.+++.+....   ..|..++.+|.|..|+.|+.|+.+..+|+.-. +..+++..|.  .
T Consensus       582 fVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~  651 (733)
T KOG0650|consen  582 FVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--K  651 (733)
T ss_pred             EEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--h
Confidence            8887     4569999999988887776655   68999999999999999999999999999854 4556666554  4


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECC------CC---Ceeeeccccccc----ceeeeecCCcccccccccCCceee
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVSV  690 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~  690 (1092)
                      .+++|+|++.-.++++|+.||++.|+...      .+   -++..+++|...    |....|+                 
T Consensus       652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH-----------------  714 (733)
T KOG0650|consen  652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH-----------------  714 (733)
T ss_pred             hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc-----------------
Confidence            68999999999999999999999998532      11   245566676655    5555555                 


Q ss_pred             cCCCCCCcccceeecccccccee
Q 001358          691 NEDPKEDVKPEISVEAENKSEVE  713 (1092)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w  713 (1092)
                           |...++++++.||+|++|
T Consensus       715 -----P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  715 -----PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             -----CCCceEEecCCCceEEee
Confidence                 667789999999999998

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=3.8e-21  Score=195.98  Aligned_cols=305  Identities=17%  Similarity=0.199  Sum_probs=229.3

Q ss_pred             ceeEecccCCCCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ......+-|.+.|++++|+|... .++|+|...|.|-+||+.+.+......               .++..|..+|.++.
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~  241 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK  241 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence            34456677888999999999876 799999999999999997544443211               12778999999999


Q ss_pred             ECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce-eEEE
Q 001358          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF  481 (1092)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~  481 (1092)
                      |+| +-..+++.|.||+|+.=|++++.. .....+..-...+..+.|+.+..  .++.+..=|...+||.+++.. ...+
T Consensus       242 F~P~n~s~i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~  318 (498)
T KOG4328|consen  242 FSPANTSQIYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL  318 (498)
T ss_pred             ecCCChhheeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence            999 567888999999999999997642 22223333445678889998888  677787778999999998655 5666


Q ss_pred             ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      .-|...|.+++++|-.. .++++++.|++.+|||++.....    .....|...|.+..|||.+-.|++.+.    +..|
T Consensus       319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I  393 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI  393 (498)
T ss_pred             hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence            77999999999988744 79999999999999999865433    345568889999999999888888765    6679


Q ss_pred             EEEeCC----CCeEEEEEeeccccCC--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      ++||..    .-....++.....+..  ......|.|+.+++++|-.-..|-|+|-..++.+..+..+.......-..|+
T Consensus       394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH  473 (498)
T ss_pred             EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence            999983    2333333332221111  2344679999999999999999999999999888776544332222345799


Q ss_pred             cCCCEEEE-EeCCCeEEEEECC
Q 001358          632 KNGTLLAV-IANENRIKILETP  652 (1092)
Q Consensus       632 ~~~~~l~~-~~~dg~i~iw~~~  652 (1092)
                      |-+..+++ ++..|.|+||..+
T Consensus       474 P~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  474 PMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccccceeccCCccceEEEEecC
Confidence            98774444 4557889988654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=6.4e-20  Score=194.20  Aligned_cols=273  Identities=13%  Similarity=0.147  Sum_probs=203.2

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|..++|-|||..++..++  ..+.|||++.|..+.+                   +++|.+.|.|+|||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence            8999999999987666544  6899999999998876                   889999999999999999999999


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      .|..|.+|+..-...++     ..|.+.|.|+.|+|-..  .|+||+-. ..-+|..+.....    .|...+..++.++
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence            99999999976533232     25999999999999988  68888754 4678986554332    2333333344444


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEecCCC-----EEEEEecCCCCceeEEEEeCCCCeE
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~-----~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      ..||++++.|-.+|+|.+-+-. +++...+..   ...+|.+++|+|...     .+++.-.    ..++..+.+ +|+.
T Consensus       141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~  214 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ  214 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence            7899999999999999987533 333333333   556899999999643     2333221    223443333 3444


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      +..-....   -...|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++...  ...|..++..|++++++.|+.||+|.
T Consensus       215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeee
Confidence            33222222   34678889999999999999999999975 45666666543  24689999999999999999999999


Q ss_pred             EEECCC
Q 001358          648 ILETPE  653 (1092)
Q Consensus       648 iw~~~~  653 (1092)
                      .|++..
T Consensus       289 CyNl~f  294 (1081)
T KOG1538|consen  289 CYNLIF  294 (1081)
T ss_pred             hhhhHH
Confidence            998763

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=2.6e-21  Score=197.94  Aligned_cols=253  Identities=19%  Similarity=0.319  Sum_probs=202.4

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCCc-------cceEEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~-------~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      .-.|.+.|+.+.+-|. ...+|+.+..+.|.|||...-...       .....+.+|...-..++|++.... .|++++.
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~  198 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD  198 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence            4569999999999995 456677788889999999754322       223368899998888999998776 7999999


Q ss_pred             CCcEEEEECCCCc-------eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC--CCCceEEecCCCCceEE
Q 001358          464 DKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       464 d~~i~vwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~  534 (1092)
                      |++|++||+....       ....+.+|...|..++|++... .++.+++.|+.+.|||.+  +.+.......|..++.+
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~  277 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC  277 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence            9999999987542       2467789999999999998754 689999999999999999  55566678889999999


Q ss_pred             EEEecCCCE-EEEEecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc
Q 001358          535 MAYSANGRR-LFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       535 ~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      ++|+|-+.+ ||+++.    +++|.+||+++. +.+.++.+|.   ..|..+.|+|.. ..+++++.|+.+.+||+..-.
T Consensus       278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig  350 (422)
T KOG0264|consen  278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG  350 (422)
T ss_pred             EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence            999996655 555554    777999999865 4567788887   999999999986 456678899999999987422


Q ss_pred             eE------------EEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCC
Q 001358          612 LL------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE  653 (1092)
Q Consensus       612 ~~------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~  653 (1092)
                      ..            ..+...++...|..+.|+|+.. .++++++|+.+.||....
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            22            1244456677899999999765 567788999999999774

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=1e-22  Score=218.32  Aligned_cols=236  Identities=17%  Similarity=0.287  Sum_probs=212.6

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ...|...|.|+..-..++.+++|+.|..+-+|.+.....+.   .+.+|..+|.++.|+++..  +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence            44588999999987789999999999989999987654443   5889999999999999988  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ++.++.++++.+|...+.++.|+|  -+.+.++|+.|+.+++||.+...+...+.+|...+..+.|+|+|++++.++.  
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--  174 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence            999999999999999999999866  5579999999999999999999999999999999999999999999999875  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        +..+.+||...|+....|.+|.   +.+.++.|+|..-.+..|+.|+++++||+++.+.+......  ...|.+.+|+
T Consensus       175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn  247 (825)
T KOG0267|consen  175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN  247 (825)
T ss_pred             --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence              6789999999999999999998   89999999999888888999999999999998888776654  4569999999


Q ss_pred             cCCCEEEEEeCC
Q 001358          632 KNGTLLAVIANE  643 (1092)
Q Consensus       632 ~~~~~l~~~~~d  643 (1092)
                      |++..+.+|...
T Consensus       248 ~~~~~~~~G~q~  259 (825)
T KOG0267|consen  248 PDGKIVLSGEQI  259 (825)
T ss_pred             CCceeeecCchh
Confidence            999998888654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.3e-21  Score=207.07  Aligned_cols=244  Identities=16%  Similarity=0.233  Sum_probs=197.1

Q ss_pred             EEEEec-CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC-CE
Q 001358          739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY  816 (1092)
Q Consensus       739 ~l~~s~-~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg-~~  816 (1092)
                      .+.|.. +.++|++++.+|.|.+||+.....                   .  .....+  .+|...+.++.|++-. .+
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------n--k~l~~f--~EH~Rs~~~ldfh~tep~i  148 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------N--KLLTVF--NEHERSANKLDFHSTEPNI  148 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCcccc-------------------c--hhhhHh--hhhccceeeeeeccCCccE
Confidence            344442 456688888899999999865210                   0  000011  1499999999999865 66


Q ss_pred             EEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeeEeeccccCCeEEEEE
Q 001358          817 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF  894 (1092)
Q Consensus       817 l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~  894 (1092)
                      |++|+ ||.|++||+...+...++.+....|+.++|+|..+..++++.+.|.+++||++.. ++..++.+|.++|.|+.|
T Consensus       149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW  228 (839)
T ss_pred             EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence            77777 8999999999999999999888999999999988999999999999999999864 577889999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE----EeCCcEEEEEcCCceee
Q 001358          895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCL  970 (1092)
Q Consensus       895 spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~----~~d~~v~lwd~~~~~~~  970 (1092)
                      +|++.+|||||+|++|+|||..+++.....++.+.       .++..+.|-|+..+.++    +.|..|+|||+...-..
T Consensus       229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi-------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI-------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             cCCCceeeecCCCccEEEEeccCCCccceeEEeec-------ceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            99999999999999999999998775554455443       25899999999886544    26788999999988777


Q ss_pred             eeeccCCCcCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce
Q 001358          971 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~-dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
                      ...+..|...++.++|.. |-..+.+++.||+|..-.++++..
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~  344 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT  344 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence            777888999999999965 566888999999988666665533

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.87  E-value=1.6e-20  Score=197.07  Aligned_cols=320  Identities=15%  Similarity=0.232  Sum_probs=236.1

Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCeE
Q 001358          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENRI  646 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i  646 (1092)
                      ..+.||.   +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+   .|.+++|+|.+.  .||++..+ .+
T Consensus       394 lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~-~~  466 (733)
T KOG0650|consen  394 LVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGE-CV  466 (733)
T ss_pred             eeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecC-ce
Confidence            4567777   999999999999999999999999999999999999998765   489999999664  45555444 35


Q ss_pred             EEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceee----ccccccceeceeeccCcc
Q 001358          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV----EAENKSEVEKPLFARPSE  722 (1092)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~----~~d~~i~~w~~~~~~~~~  722 (1092)
                      .|.+..-+..+..-.                                   ....++++    ..+..+-.|.-...+..+
T Consensus       467 ~ivnp~~G~~~e~~~-----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~  511 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGP-----------------------------------TKELLASAPNESEPDAAVVTWSRASLDELE  511 (733)
T ss_pred             EEeCccccchhhhcc-----------------------------------hhhhhhcCCCccCCcccceeechhhhhhhc
Confidence            565544331111100                                   00111111    122345556533221111


Q ss_pred             ---ceecccCCccccccEEEEEEecCCcEEEEeecC---CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC
Q 001358          723 ---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1092)
Q Consensus       723 ---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  796 (1092)
                         |..+     .|...|..+.|...|.+|++...+   ..+.|+++.....                      ...  +
T Consensus       512 ~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~P--F  562 (733)
T KOG0650|consen  512 KGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QSP--F  562 (733)
T ss_pred             cceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cCc--h
Confidence               2232     277899999999999999988764   4566666544321                      111  1


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358          797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       797 ~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                        .-..+.|.++.|+|...++++++...|+|||+..++.+..+......|..++++| .|.-|+.|+.|+.+..||+.-+
T Consensus       563 --~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  563 --RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             --hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC
Confidence              1156778899999999999999999999999999888888888888999999999 8888899999999999999854


Q ss_pred             -eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC--CCc--eeeeeeeecCCCCcCC-CCCceEEEEecCCCE
Q 001358          877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--GWG--IQTCRSLQTPDGVMTL-APSETHIQFHKDQTR  950 (1092)
Q Consensus       877 -~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~--~~~--~~~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~  950 (1092)
                       ++.+++.-|...|++++|++.-.++++|+.||++.|+--.  +.-  .....+++.+.+|... ...|..+.|+|..-+
T Consensus       640 skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW  719 (733)
T KOG0650|consen  640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW  719 (733)
T ss_pred             cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence             6778889999999999999999999999999999988421  100  0112345566666442 135788889999999


Q ss_pred             EEE-EeCCcEEEE
Q 001358          951 FLL-VHETHLAIY  962 (1092)
Q Consensus       951 la~-~~d~~v~lw  962 (1092)
                      |.+ |.|++|++|
T Consensus       720 LfsAGAd~tirlf  732 (733)
T KOG0650|consen  720 LFSAGADGTIRLF  732 (733)
T ss_pred             EEecCCCceEEee
Confidence            998 789999998

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=5.5e-20  Score=184.93  Aligned_cols=308  Identities=15%  Similarity=0.156  Sum_probs=220.0

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      .+..|+ +|..+.|.+++...+|+|+.|..|+||.++.+..-...          ....-...|..|...|+++.|+|+|
T Consensus         9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g   77 (434)
T KOG1009|consen    9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG   77 (434)
T ss_pred             EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence            334565 99999999988657999999999999999876543310          0111223488999999999999999


Q ss_pred             CEEEEEeCCCEEEEEEcc--------C-----CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ..||+|+.+|.|.+|...        +     .+.......+.+|...|..++|+||+.  ++++++.|.++++||+..|
T Consensus        78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence            999999999999999877        3     122233446789999999999999999  8999999999999999999


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------------------CCC----Cce
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC  532 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~----~~i  532 (1092)
                      ..+..+..|...|..++|.|  -++++++-+.|...+.+.+..........                   .|.    .-.
T Consensus       156 ~l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF  233 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF  233 (434)
T ss_pred             eeEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence            99999999999999999965  44788888888866666554332211110                   011    124


Q ss_pred             EEEEEecCCCEEEEEecCCC-----CceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcC------------------
Q 001358          533 TRMAYSANGRRLFSCGTSKE-----GESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------  588 (1092)
Q Consensus       533 ~~~~~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~------------------  588 (1092)
                      ..++|+|||..+++....-+     ..+..|+++-.. .+....+.+..   .+...+.|+|                  
T Consensus       234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp  310 (434)
T KOG1009|consen  234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP  310 (434)
T ss_pred             hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence            56889999999986543111     123345554331 12222333322   3444444443                  


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358          589 AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       589 ~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      -+-.+++++ ...|++||.++..++.....- +...++.++|++||..+++.+.||...+...+..+.
T Consensus       311 yrlvfaiAt-~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  311 YRLVFAIAT-KNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             cceEEEEee-cceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            222334444 467999999998887766432 345799999999999999999999988877765543

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=2e-20  Score=202.74  Aligned_cols=284  Identities=16%  Similarity=0.257  Sum_probs=216.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCcc-ceEEeccc---ccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAH---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      ....+|+..++-..|+.++.. .++||.+....... .....+..   ...+..+.|..-... +|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence            456678888999999888665 47888776533211 11111111   123556778754444 8999999999999999


Q ss_pred             CC---CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC-CCEEEEEe
Q 001358          473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN-GRRLFSCG  548 (1092)
Q Consensus       473 ~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d-g~~l~~~~  548 (1092)
                      ..   .+.+..|..|...+++++|++.. ..+|++|+.||+|++||++......++......|+.+.|+|. +..++++.
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            87   67778899999999999998764 369999999999999999999999888888889999999995 55666665


Q ss_pred             cCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      .    .|.+++||++.. ++...+..|.   ++|.++.|+|++.+|++||.|+.|+|||+.+.+.......+. ..++.+
T Consensus       197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r  268 (839)
T KOG0269|consen  197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR  268 (839)
T ss_pred             C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence            3    678999999854 4556677777   999999999999999999999999999998765433333222 356899


Q ss_pred             EEEccCCC-EEEEEe--CCCeEEEEECCCC-CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358          628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       628 v~~s~~~~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      +.|-|+.. +||+++  .|..|+|||+... -+...+..|...++.++|.                     +.|...+.+
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s  327 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS  327 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence            99999655 566554  3889999999866 4556777888888888886                     345666778


Q ss_pred             eccccccce
Q 001358          704 VEAENKSEV  712 (1092)
Q Consensus       704 ~~~d~~i~~  712 (1092)
                      ++.|+++..
T Consensus       328 ~sKD~tv~q  336 (839)
T KOG0269|consen  328 CSKDGTVLQ  336 (839)
T ss_pred             ecCccHHHH
Confidence            888877644

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.8e-21  Score=208.87  Aligned_cols=239  Identities=11%  Similarity=0.205  Sum_probs=214.0

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +....|+..|.|+..-..++ .+++|+.|..+-+|.+..-..+..                   +.+|..+|.++.|+++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~   81 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS   81 (825)
T ss_pred             hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence            45567888999999866676 799999999999999876555443                   7899999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      ..+|++|+.+|+|++||++.++.++   +|.+|...+.++.|+|-+.  +.++|+.|+.+++||++...|.+.+.+|...
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence            9999999999999999999988777   7889999999999999999  7899999999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      |..+.|  +++|.++++++.|.++++||+..++....+..|...+..+.|+|..-.++.|+.    +..+++||+++.+.
T Consensus       157 v~~l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~  230 (825)
T KOG0267|consen  157 VDVLRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV  230 (825)
T ss_pred             eEEEee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence            999999  558899999999999999999999999999999999999999999988888876    67799999999888


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001358          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg  600 (1092)
                      +.......   ..|.+..|+|++..+++|....
T Consensus       231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeccCCcc---CCceeeeecCCceeeecCchhh
Confidence            87777665   8899999999999888876543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.8e-19  Score=171.05  Aligned_cols=268  Identities=13%  Similarity=0.197  Sum_probs=195.8

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CC
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG  408 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg  408 (1092)
                      .+|.+-|.|+.|.+-|++ +|+|+.|++|+|||.....--...+               ...+.|.+.|..+.|.+  -|
T Consensus        10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~T---------------s~Wrah~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCT---------------SSWRAHDGSIWRVVWAHPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEe---------------eeEEecCCcEEEEEecCcccc
Confidence            589999999999999996 8999999999999976544322111               11556999999999987  59


Q ss_pred             CEEEEEeCCCEEEEEEccC------CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc------
Q 001358          409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------  476 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~------  476 (1092)
                      +.+|+++.|+++.||.-..      +.......++......|+.+.|.|....+.+++++.||.+|||+.-..-      
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            9999999999999998631      1122234456677789999999998887899999999999999865432      


Q ss_pred             eeEEEe-------cCCcceEEEeecccCC-ccEEEEEecC-----CeEEEEEcCCCCc----eEEecCCCCceEEEEEec
Q 001358          477 RTYSFE-------GHGAPVYSLCPHAKEN-IHFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSA  539 (1092)
Q Consensus       477 ~~~~~~-------~~~~~v~~i~~~~~~~-~~~l~s~~~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~  539 (1092)
                      ..+++.       .+..+..|+.|+++.- .++|+.|+.+     +.+.||.......    ..++..+..+|+.++|.|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence            223333       3666777888876543 2467777665     4789998776553    235678888999999999


Q ss_pred             CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001358          540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       540 dg----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~  598 (1092)
                      +-    ..|++++.    +| |+||.+....                 .+..+..+..|++.|..+.|+-.|..|.+.+.
T Consensus       234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence            63    34666654    44 9999876311                 12333333344599999999999999999999


Q ss_pred             CCeEEEEECCC---CceEEEEeCC
Q 001358          599 DHVIKIWDMNK---VQLLTTIDAG  619 (1092)
Q Consensus       599 dg~i~iwd~~~---~~~~~~~~~~  619 (1092)
                      ||.||+|...-   .++...+...
T Consensus       309 DG~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  309 DGCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             CceeeehhhhhhhhheeeeEEecc
Confidence            99999997542   3344445444

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.6e-19  Score=191.34  Aligned_cols=286  Identities=17%  Similarity=0.152  Sum_probs=197.4

Q ss_pred             cEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeE
Q 001358          747 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVI  825 (1092)
Q Consensus       747 ~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i  825 (1092)
                      ..|+.+..+|.|.+++.....+.               ++... +..    ...|.+.|..+.+.|....|++++ |.++
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~----~~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK----PLAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc----cccccceeEeeccCCCceeEEEccCCcee
Confidence            34666777899999986543221               11000 111    114999999999999767777776 7889


Q ss_pred             EEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------e-----
Q 001358          826 SLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------V-----  878 (1092)
Q Consensus       826 ~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~-----  878 (1092)
                      ++||+++.+++..  +.+|.+.+.+++|.|.+...+++|+.||.|.|||+.-..                    .     
T Consensus       125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9999999998877  889999999999999888999999999999999985321                    0     


Q ss_pred             --eEeeccccCCeEE---EEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeee-eee--cCCCCcCCCCCceEEEEecCCC
Q 001358          879 --ISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR-SLQ--TPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       879 --~~~l~~h~~~V~~---l~~spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~-~~~--~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                        +....+|...|.+   +.+.-|...||++|. |+.|+|||+......... ...  ....+..-.-.+.++.....|.
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence              1222345566666   666678899999998 999999999875422111 111  1111111112466777777788


Q ss_pred             EEEE-EeCCcEEEEEcCCceeeee-eccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC
Q 001358          950 RFLL-VHETHLAIYEAEELTCLKQ-WFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus       950 ~la~-~~d~~v~lwd~~~~~~~~~-~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
                      +|.+ +.|+.|++|++.+...-.. .+.++  ...-..-..|||+.+|++|+.|..+++|.+...+.--...    ..  
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~G--  358 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----LG--  358 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----hC--
Confidence            8877 7999999999976432211 12222  1112223468999999999999999999999876642222    11  


Q ss_pred             CccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                       |.-+|.  +++|.|.+-.-++++++|.++++|++.
T Consensus       359 -ht~eVt--~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  359 -HTREVT--TVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             -cceEEE--EEeeccccCCCceeeccCcceEEEecc
Confidence             334455  445554334568888999999999994

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.6e-19  Score=171.16  Aligned_cols=256  Identities=13%  Similarity=0.177  Sum_probs=190.4

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-CccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~  468 (1092)
                      -.+|.+-|+++.|.+.|+++|+|+.|++|+|||.+.+. ........+.|.+.|..+.|.+-  |+  .+++++.|+++.
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~   86 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS   86 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence            56799999999999999999999999999999965432 34445567899999999999764  66  899999999999


Q ss_pred             EEECCC------C---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Eec-------
Q 001358          469 VWDAVT------G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD-------  526 (1092)
Q Consensus       469 vwd~~~------~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~-------  526 (1092)
                      ||.-..      +   ....++......|++++|.|..-|-.+++++.||.+|||+....-...      .+.       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421      1   123556677889999999999999999999999999999765432211      111       


Q ss_pred             CCCCceEEEEEecC---CCEEEEEecC-CCCceeEEEEeCCCC--e--EEEEEeeccccCCceEEEEEcCCC----CEEE
Q 001358          527 APGLGCTRMAYSAN---GRRLFSCGTS-KEGESFLVEWNESEG--A--IKRTYQGLQLQHNSVSVVHFDTAK----DQIL  594 (1092)
Q Consensus       527 ~~~~~i~~~~~s~d---g~~l~~~~~~-~~~~~~i~iwd~~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~  594 (1092)
                      .+..+..|+.|+|.   ..+|++++.+ ....+.++||....+  +  .+..+.+|.   .+|+.++|.|+-    ..++
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence            23446788899874   3467766643 111234666655432  2  344566666   999999999973    5688


Q ss_pred             EEeCCCeEEEEECCCCc-----------------eEEEEe-CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       595 ~~s~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      +++.|| |+||++....                 .+..+. ..+|...|..+.|+-.|..|++.+.||.+++|...-
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            899999 9999987311                 112222 334556799999999999999999999999998653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.5e-19  Score=191.74  Aligned_cols=287  Identities=18%  Similarity=0.221  Sum_probs=206.2

Q ss_pred             CCCceEEEEEcCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEE
Q 001358          344 PVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL  422 (1092)
Q Consensus       344 pdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~i  422 (1092)
                      |+.+.+||.+..||.|.++|...-.-. ....++              ....|...|..++|-|....|++++.|.++++
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk--------------~~~aH~nAifDl~wapge~~lVsasGDsT~r~  126 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLK--------------KPLAHKNAIFDLKWAPGESLLVSASGDSTIRP  126 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchhhhhhc--------------ccccccceeEeeccCCCceeEEEccCCceeee
Confidence            344568999999999999998764322 111111              14569999999999997778999999999999


Q ss_pred             EEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc--------------------------
Q 001358          423 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--------------------------  476 (1092)
Q Consensus       423 wd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--------------------------  476 (1092)
                      ||+++++..... .+.||.+.|.+++|.|+... .+++|+.||.|.|||+.-..                          
T Consensus       127 Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  127 WDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            999998876643 46799999999999999886 89999999999999975221                          


Q ss_pred             -eeEEEecCCcceEE---EeecccCCccEEEEEec-CCeEEEEEcCCCCceEE--------ecCC---CCceEEEEEecC
Q 001358          477 -RTYSFEGHGAPVYS---LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSAN  540 (1092)
Q Consensus       477 -~~~~~~~~~~~v~~---i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~~~s~d  540 (1092)
                       .++....+...|.+   +.+  ..|...|++++. |+.|+|||++.......        +..+   ...+.++.....
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~--fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss  282 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVL--FKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS  282 (720)
T ss_pred             ccccccccccCceeeeeEEEE--EeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence             01111234444433   222  235678888887 99999999987654332        2222   235778888888


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358          541 GRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      |.+|++...    |+.|+.|++.+-  ..+..+.++......+ .-..+|++.++++|+.|...++|.+.+.+.-..+. 
T Consensus       283 Gt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-  356 (720)
T KOG0321|consen  283 GTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-  356 (720)
T ss_pred             CCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCcceeeeeecCccCChhhh-
Confidence            888877765    667999998754  3344555544111122 23578999999999999999999998765433222 


Q ss_pred             CCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCC
Q 001358          619 GGGLPENPRICFNK-NGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .++...|.+++|.| .-.-++++++|..++||++..+
T Consensus       357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            13345689999987 3344667799999999999654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=4.3e-19  Score=173.45  Aligned_cols=298  Identities=15%  Similarity=0.260  Sum_probs=214.3

Q ss_pred             EecccCCCCceEEeecC----CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~sp----dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      +...+|+.+|..++|.+    +...++|+.+. ..+.||......-+..              ++.-.-..|...-..++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs   96 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS   96 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence            55678988999999984    33335666554 6788998875442221              11111334778888899


Q ss_pred             ECCCC----CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       404 ~spdg----~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      |+-|.    -+||+|+.-|.|+|.|+.+++...   .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..++.
T Consensus        97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~  172 (385)
T KOG1034|consen   97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA  172 (385)
T ss_pred             EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence            98753    478999999999999999987766   67899999999999999877 89999999999999999999998


Q ss_pred             EE---ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE------Ee----------------------cCC
Q 001358          480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAP  528 (1092)
Q Consensus       480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~----------------------~~~  528 (1092)
                      .|   .||.+.|.++.|+.  +|.++++++.|.++++|++...+-..      .+                      ..|
T Consensus       173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            87   56999999999955  66799999999999999997432111      11                      011


Q ss_pred             CCceEEEEEecCCCEEEEEecCCCCceeEEEEeC-CCCeEE----------EEEeeccccCCceEEE--EEcCCCCEEEE
Q 001358          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIK----------RTYQGLQLQHNSVSVV--HFDTAKDQILA  595 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~----------~~~~~~~~~~~~v~~~--~~~~~~~~l~~  595 (1092)
                      ...|.++.|-  |.++++-+-    ++.|..|.+ +-++.+          ..+.........+.-+  +|.|-++.|+.
T Consensus       251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence            1122222221  456666543    557999987 222211          1111111112444444  55677899999


Q ss_pred             EeCCCeEEEEECCCCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          596 AGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       596 ~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      |...|.|++||++....  ..++..+.....|...+|+.||..|+..++|++|.-||..
T Consensus       325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99999999999987655  3344444445678999999999999999999999999864

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=6.7e-19  Score=172.09  Aligned_cols=299  Identities=14%  Similarity=0.198  Sum_probs=206.6

Q ss_pred             ccccEEEEEEec----CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358          733 KANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  808 (1092)
Q Consensus       733 ~~~~i~~l~~s~----~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~  808 (1092)
                      |...|..++|.+    +...+++......+.+|+.+...                    +.++...... ..+......+
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D-~d~~Esfytc   95 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYAD-EDHDESFYTC   95 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccC-CCCCcceEEE
Confidence            667788888874    33345555556688888876531                    1122222221 2366677778


Q ss_pred             EEecCC----CEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec
Q 001358          809 ALSKND----AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       809 ~~s~dg----~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      +|+-|-    -++|.++ -|.|+|.|..++++...+.+|...|..+.+.|++.++|++++.|.+|++|++++..++..+-
T Consensus        96 sw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG  175 (385)
T KOG1034|consen   96 SWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG  175 (385)
T ss_pred             EEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence            887653    3566665 59999999999999999999999999999999878899999999999999999999998874


Q ss_pred             ---cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-------------eeeeecCCCCcC-------CCCCce
Q 001358          884 ---GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-------------CRSLQTPDGVMT-------LAPSET  940 (1092)
Q Consensus       884 ---~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~-------------~~~~~~~~~~~~-------~~~~v~  940 (1092)
                         ||.+.|.++.|+++|.+++|+|.|.+|++|+++..+...             ...+.++..+.+       +...|.
T Consensus       176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence               699999999999999999999999999999998533111             001111111111       001222


Q ss_pred             EEEEecCCCEEEE-EeCCcEEEEEc-CCceeeeee------------ccCCCcCEEEEEEe--cCCCEEEEEeCCCcEEE
Q 001358          941 HIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFS--CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       941 ~l~~s~dg~~la~-~~d~~v~lwd~-~~~~~~~~~------------~~~h~~~v~~l~fs--~dg~~l~t~s~Dg~i~v 1004 (1092)
                      ++.|-  |.++++ +.++.|..|.. +-.+.+...            +.-....|+-+.|+  |-+++||.|...|.|.+
T Consensus       256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v  333 (385)
T KOG1034|consen  256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV  333 (385)
T ss_pred             HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence            22222  577777 78889999987 212221111            11125566666665  55789999999999999


Q ss_pred             EECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1005 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ||++.-+.... .   .+.....+..|+  ..+|+. |+..|+..++|++|.-||..
T Consensus       334 wdL~~~ep~~~-t---tl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  334 WDLDNNEPPKC-T---TLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EECCCCCCccC-c---eEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            99998766411 1   111111234455  455665 58999999999999999863

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.1e-20  Score=185.53  Aligned_cols=243  Identities=15%  Similarity=0.181  Sum_probs=188.1

Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEe------------------cccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l------------------~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      |+|+|.|+.|..|.|||+.-...+.+...|                  .+|+..|.+++|+..-+. +|+|||.|.+|++
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l  270 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL  270 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence            689999999999999998643322222222                  279999999999988776 8999999999999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      ||+.+|++..++..|...|.++.|++. ...+|++|+.|+++.+.|.+........-...+.|..++|.|.....+.++.
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence            999999999999999999999999976 4579999999999999999853332222223457888999998877666664


Q ss_pred             CCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          550 SKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                         .+|+|+-+|.+.. +++.+++.|.   ++|.++++++... .+++++.|+.|.+|++..-.........-......|
T Consensus       350 ---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c  423 (463)
T KOG0270|consen  350 ---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHC  423 (463)
T ss_pred             ---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceee
Confidence               3788999999865 8899999988   8999999998754 566799999999999876444222221111222456


Q ss_pred             EEEccCC-CEEEEEeCCCeEEEEECCCCCeee
Q 001358          628 ICFNKNG-TLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       628 v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      .++.|+- -+++.|+..+.++|||+.+...+.
T Consensus       424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             cccCCCcceEEEecCccceEEEeecccChhHH
Confidence            6777754 467788888899999998775443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=2e-16  Score=184.24  Aligned_cols=372  Identities=23%  Similarity=0.395  Sum_probs=285.4

Q ss_pred             ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCc-ceEEEeecccCCcc-EEEEEec-CCeEE
Q 001358          437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKIK  512 (1092)
Q Consensus       437 l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~-~v~~i~~~~~~~~~-~l~s~~~-dg~i~  512 (1092)
                      +..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            557999999999999999  78888899999999998887 6777776443 77777775 55555 5555444 99999


Q ss_pred             EEEcCC-CCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001358          513 AWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       513 vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1092)
                      +|+... ......+..+...+..++|+|+++.+++++.   .++.+++|+...+..+..+.+|.   ..+.+++|+|++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~  211 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG  211 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcc
Confidence            999998 7777788889999999999999998777743   36779999999988888888876   8999999999998


Q ss_pred             -EEEEEeCCCeEEEEECCCCceEE-EEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe-eeecccccccce
Q 001358          592 -QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNLR  668 (1092)
Q Consensus       592 -~l~~~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~  668 (1092)
                       .+++++.|+.+++||...+.... .+..+...  . ...|+|++.++++++.|+.+++|+...... +...        
T Consensus       212 ~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------  280 (466)
T COG2319         212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------  280 (466)
T ss_pred             eEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------
Confidence             44455999999999988777777 46555332  2 228999998999999999999999886532 1100        


Q ss_pred             eeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcE
Q 001358          669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA  748 (1092)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~  748 (1092)
                                                                                    ..|...+.++.+.|++..
T Consensus       281 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~  298 (466)
T COG2319         281 --------------------------------------------------------------SGHSSSVLSVAFSPDGKL  298 (466)
T ss_pred             --------------------------------------------------------------ecCCccEEEEEECCCCCE
Confidence                                                                          114567788888888888


Q ss_pred             EEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE--eCCeEE
Q 001358          749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVIS  826 (1092)
Q Consensus       749 l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~--sdg~i~  826 (1092)
                      +++++.++.+.+|+......                      .....  ...|...+..+.+.+++..++.+  .++.+.
T Consensus       299 ~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  354 (466)
T COG2319         299 LASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR  354 (466)
T ss_pred             EEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence            88888887788886544321                      11111  11255678888884333555555  368899


Q ss_pred             EEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358          827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       827 iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                      +|+............. ..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..+++++
T Consensus       355 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (466)
T COG2319         355 LWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS  431 (466)
T ss_pred             eeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec
Confidence            9999887733333322 2288999998 7 55555 88999999999999887777765547899999999999999999


Q ss_pred             CCCcEEEEEcCC
Q 001358          906 GDAQIFVWDVDG  917 (1092)
Q Consensus       906 ~Dg~i~iwd~~~  917 (1092)
                      .++.+++|+...
T Consensus       432 ~~~~~~~~~~~~  443 (466)
T COG2319         432 SDNTIRLWDLKT  443 (466)
T ss_pred             CCCcEEEEeccC
Confidence            999999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=6.4e-17  Score=188.33  Aligned_cols=371  Identities=23%  Similarity=0.350  Sum_probs=274.8

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC-ceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEE-C
Q 001358          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S  405 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~-s  405 (1092)
                      .+.+|...|.++.|.+++. .++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            5678899999999999998 67888889999999999886 3322                   33322 46777777 8


Q ss_pred             CCCC-EEEEEeC-CCEEEEEEccC-CCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECCCCceeEEE
Q 001358          406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~  481 (1092)
                      +++. +++..+. |+.+.+|+... ..   ....+..|...|..++|+|++.  .+++++. |+.+++|++.++..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGK---LIRTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCe---EEEEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 89999999987 43   2336778999999999999999  6777775 999999999999999999


Q ss_pred             ecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+|...|.++++.  +++. ++++++.|+.|++||........ .+..+.... ...|++++..+++++.    ++.+++
T Consensus       195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~  267 (466)
T COG2319         195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL  267 (466)
T ss_pred             ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence            9999999999997  4555 55566999999999888666655 466666664 3389999988886654    667999


Q ss_pred             EeCCCCeE-EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358          560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      |+...... ...+.+|.   ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++
T Consensus       268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (466)
T COG2319         268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV  344 (466)
T ss_pred             eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence            99987665 44444444   889999999988899888888999999998887776665112222578888843435666


Q ss_pred             EE-eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee-eccccccceecee
Q 001358          639 VI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEKPL  716 (1092)
Q Consensus       639 ~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~~w~~~  716 (1092)
                      .+ ..|+.+.+|+............... +..+.+.                      ++ ..... +..++.+.+|+..
T Consensus       345 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~~  400 (466)
T COG2319         345 SGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWDLS  400 (466)
T ss_pred             EeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEecc
Confidence            65 6788999999988762222222211 4444454                      22 22333 5778899999976


Q ss_pred             eccCccceecccCCcccc-ccEEEEEEecCCcEEEEeecCCeeEEeeecC
Q 001358          717 FARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~  765 (1092)
                      .........       .. ..+....+++++..++.++.++.+++|+...
T Consensus       401 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         401 TGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             cCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            432221111       11 6788899999999999988899999988543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=2.4e-20  Score=211.82  Aligned_cols=296  Identities=16%  Similarity=0.265  Sum_probs=226.6

Q ss_pred             ceEEeecCCCceEEEEEcC----------cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          337 PMSMDFHPVQHTLLLVGTN----------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~----------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      -..++|||++..++|+|..          +.++.||.+.-.....       |+..+.       --.-...-+.++|++
T Consensus         9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~-------dlk~~~-------s~~s~~rF~kL~W~~   74 (1049)
T KOG0307|consen    9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS-------DLKPVG-------SLQSSNRFNKLAWGS   74 (1049)
T ss_pred             cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccc-------cccccc-------cccccccceeeeecc
Confidence            3467999999767887743          2344555443221110       000000       011235677899999


Q ss_pred             CCCE----EEEEeCCCEEEEEEccC---CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          407 DGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       407 dg~~----las~~~d~~i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      .|..    ||.|..||.|.+||...   +.....+.+...|.+.|..+.|++.+.. +|++|+.||.|.|||+..-+.-.
T Consensus        75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~  153 (1049)
T KOG0307|consen   75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF  153 (1049)
T ss_pred             cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence            7766    88889999999999876   4444445567789999999999998876 79999999999999998765554


Q ss_pred             EEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceEEEEEecCCCE-EEEEecCCCCc
Q 001358          480 SFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRR-LFSCGTSKEGE  554 (1092)
Q Consensus       480 ~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~dg~~-l~~~~~~~~~~  554 (1092)
                      ...  .....|.+++|+.. ..++|++++.+|++.|||++..+.+..+..+..  .+..++|+|++.. +++++ +.+..
T Consensus       154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As-~dd~~  231 (1049)
T KOG0307|consen  154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS-GDDSA  231 (1049)
T ss_pred             CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec-CCCCC
Confidence            442  24567999999743 557899999999999999999988887766655  4778999998864 44444 45668


Q ss_pred             eeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          555 SFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       555 ~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      -.|.+||++. ...++.+++|.   ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+  ..+..+.|+|
T Consensus       232 PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~p  306 (1049)
T KOG0307|consen  232 PVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCP  306 (1049)
T ss_pred             ceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecC
Confidence            8999999874 45677788888   899999999987 788899999999999999999999998643  4688999999


Q ss_pred             CCC-EEEEEeCCCeEEEEECCCC
Q 001358          633 NGT-LLAVIANENRIKILETPES  654 (1092)
Q Consensus       633 ~~~-~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ... .+++++-||.|.|+.+...
T Consensus       307 r~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  307 RNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             CCcchhhhheeccceeeeeeecC
Confidence            554 8899999999999998765

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=8.4e-19  Score=179.98  Aligned_cols=294  Identities=16%  Similarity=0.206  Sum_probs=214.7

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE--eCCCeEEEEECCCCCeeeecccccccceee
Q 001358          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKL  670 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~  670 (1092)
                      +..++....+++||.........+..+...+.+.++.|+.... |+++  +.|..+++|.-.....              
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--------------   69 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--------------   69 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC--------------
Confidence            3344444579999998877776666666666789999987654 4443  4577788886442200              


Q ss_pred             eecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEE
Q 001358          671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF  750 (1092)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~  750 (1092)
                                                            +|-+-...                ....-.|++......+++
T Consensus        70 --------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~   95 (673)
T KOG4378|consen   70 --------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEI   95 (673)
T ss_pred             --------------------------------------ccceeecc----------------ccchHHHHhhhhcceeee
Confidence                                                  00000000                011122333344457899


Q ss_pred             EeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC-CeEEEEE
Q 001358          751 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYI  829 (1092)
Q Consensus       751 ~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd  829 (1092)
                      +++..+.++|||++...                        .-..+.  +|...|+++.+.....|||++++ |.|.|..
T Consensus        96 sgG~~~~Vkiwdl~~kl------------------------~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~  149 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRAKL------------------------IHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHG  149 (673)
T ss_pred             ccCcCceeeehhhHHHH------------------------Hhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence            99999999999986421                        111122  48899999999999999999995 8899999


Q ss_pred             cCCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee-ccccCCeEEEEEcCCC-CEEEEEeC
Q 001358          830 VMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGG  906 (1092)
Q Consensus       830 ~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg-~~l~s~s~  906 (1092)
                      +.++.....|....+ .++-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|+|.. .+|++.|.
T Consensus       150 ~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~  229 (673)
T KOG4378|consen  150 TKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY  229 (673)
T ss_pred             cccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence            999888888876544 56689999966677888999999999999987766554 5699999999999954 77899999


Q ss_pred             CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEE
Q 001358          907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT  985 (1092)
Q Consensus       907 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~  985 (1092)
                      |..|.+||+.......  ++..       ..+..+++|+++|.+|++| ..|.|..||++..+..-..+..|...|++++
T Consensus       230 Dkki~~yD~~s~~s~~--~l~y-------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTD--RLTY-------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             cceEEEeecccccccc--eeee-------cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            9999999998643222  1111       1257899999999999996 7799999999876655555778999999999


Q ss_pred             EecCC
Q 001358          986 FSCDC  990 (1092)
Q Consensus       986 fs~dg  990 (1092)
                      |-+..
T Consensus       301 fq~s~  305 (673)
T KOG4378|consen  301 FQPSP  305 (673)
T ss_pred             eeecc
Confidence            98765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.2e-17  Score=177.45  Aligned_cols=606  Identities=12%  Similarity=0.117  Sum_probs=360.1

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC-----
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG-----  408 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg-----  408 (1092)
                      ...-.++.|+|.|  |+|.|+. ..|.|-|..+-+.+..                   +.-|...|+.+.|+|-.     
T Consensus        15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l   72 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL   72 (1062)
T ss_pred             cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence            3357789999999  6888875 6799999999888875                   55699999999998731     


Q ss_pred             -------CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC---CCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          409 -------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       409 -------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                             -+||++...|.|.+||...+..+.   .+..|..++..++|-+   +++. +|+.-....++.+|+..+|+..
T Consensus        73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~  148 (1062)
T KOG1912|consen   73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF  148 (1062)
T ss_pred             cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence                   257788888999999999886555   5677888999999965   3434 5566666789999999999999


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEe-cCCCC-------------------c-
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDY-DAPGL-------------------G-  531 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~-~~~~~-------------------~-  531 (1092)
                      ...........++.+.|-.. ..+..-+..|.+.+.+.-...      ....+ ..+..                   . 
T Consensus       149 Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  149 WKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             eccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence            88776666677777766543 344444455555555432111      11111 11100                   0 


Q ss_pred             -----eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCeEEE
Q 001358          532 -----CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKI  604 (1092)
Q Consensus       532 -----i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~i  604 (1092)
                           ...++|+|.-+.++....    ...+.++|++-..++....-..   +.+.-+.+-|++  ..+++.-.||.+.+
T Consensus       228 ~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lti  300 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTI  300 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEE
Confidence                 123567776555444443    2339999999888888777655   666667776664  67899999999999


Q ss_pred             EECCCC----------------ceEEEEeCCCCCCCCceEEEccC-CCEEEEEeCCCeEEEEECCCCCeeeecc------
Q 001358          605 WDMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG------  661 (1092)
Q Consensus       605 wd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~------  661 (1092)
                      |-.+..                .....+..-... .....+..|. ...+++...+|...+|.+.+++.-....      
T Consensus       301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel  379 (1062)
T KOG1912|consen  301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIEL  379 (1062)
T ss_pred             EEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccc
Confidence            976542                222222111111 1222333343 4556666677888889888653221111      


Q ss_pred             -------------------------cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          662 -------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       662 -------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                                               +|.....+....|.....-+.+..    +......--.+++.|...|+|.++|+.
T Consensus       380 ~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p----~~n~~~~~~pLvAvGT~sGTV~vvdvs  455 (1062)
T KOG1912|consen  380 VLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP----GGNTPAGTVPLVAVGTNSGTVDVVDVS  455 (1062)
T ss_pred             cccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC----CCCccceeeeeEEeecCCceEEEEEec
Confidence                                     111222222222211111000000    000001112457889999999999987


Q ss_pred             eccCccceecccCCccccccEEEEEEecCCcEEEEeecC--CeeEEeeecCCccccCcccccccCCccccCCCCCceeee
Q 001358          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN  794 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (1092)
                      ++.......      .|...|.++.|......+-.+.+.  ..-.+               -.+.+.+-++.+|......
T Consensus       456 t~~v~~~fs------vht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR  514 (1062)
T KOG1912|consen  456 TNAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFR  514 (1062)
T ss_pred             chhhhhhhc------ccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEcccccccccc
Confidence            655444443      388999999998887754433321  00000               0123445566666644444


Q ss_pred             cCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEc-CC---------------CCC
Q 001358          795 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNN  857 (1092)
Q Consensus       795 ~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~  857 (1092)
                      .+++ ..+.+|+.+..|..|+|++..- +.-+.+||+++..+++...-.-.-++.++|+ |.               ..+
T Consensus       515 ~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n  593 (1062)
T KOG1912|consen  515 GLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSEN  593 (1062)
T ss_pred             cCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhc
Confidence            3333 5788999999999999999997 6779999998877766554444458888888 31               112


Q ss_pred             EEEEEeCCCeEEEEEcCC-------cee-eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC
Q 001358          858 VIAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP  929 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~  929 (1092)
                      .++..+  +..+++.+.-       +.. ....+.....+..|+|-  +..|+.|..+|.+.+||+.......  ....+
T Consensus       594 ~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p  667 (1062)
T KOG1912|consen  594 LVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRG--VRDSP  667 (1062)
T ss_pred             eeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccC--ccCCC
Confidence            333333  2333333321       111 11111112233446664  6699999999999999987632111  11111


Q ss_pred             CCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC--CcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          930 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       930 ~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                       .+.   .......+-|....+++-...-+-+||.+....+..+ .+.  +..+..+.+......++  ..|.++|+-.+
T Consensus       668 -~~r---a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m  740 (1062)
T KOG1912|consen  668 -DPR---AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVM  740 (1062)
T ss_pred             -Cch---hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEec
Confidence             111   1223334445433444445556889999888777764 333  34444555544444443  34557887766


Q ss_pred             CCCceE
Q 001358         1008 SNLEVQ 1013 (1092)
Q Consensus      1008 ~~~~~~ 1013 (1092)
                      ......
T Consensus       741 ~mks~~  746 (1062)
T KOG1912|consen  741 PMKSPP  746 (1062)
T ss_pred             cccCCc
Confidence            655443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=9.8e-19  Score=179.51  Aligned_cols=293  Identities=14%  Similarity=0.173  Sum_probs=220.6

Q ss_pred             EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE--EeCCCEEEEEEccC
Q 001358          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV--AYSKHIVQLYAYHG  427 (1092)
Q Consensus       350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las--~~~d~~i~iwd~~~  427 (1092)
                      +|+++  ..++|||+..-+....+.                 -......+.++.|+.... |++  .+.|..|++|.-..
T Consensus         7 ~aS~g--d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g   66 (673)
T KOG4378|consen    7 VASTG--DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDG   66 (673)
T ss_pred             eeccC--CceEEeecccccCccccc-----------------cCCCCCcceeeeccccce-EEEeecCCceeEEEecccC
Confidence            44443  579999998655443211                 001123488999998664 444  35678899997654


Q ss_pred             CCC-ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe
Q 001358          428 GSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS  506 (1092)
Q Consensus       428 ~~~-~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~  506 (1092)
                      ... +.....+.+.  .-.|++......  ++++||..+.|+|||++...+.+.+++|...|+++.++.  ...+|++++
T Consensus        67 ~~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs  140 (673)
T KOG4378|consen   67 KTPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVS  140 (673)
T ss_pred             CCCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEec
Confidence            311 1111122222  233343333334  899999999999999998888889999999999999865  447999999


Q ss_pred             cCCeEEEEEcCCCCceEEecCC-CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358          507 VDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       507 ~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                      ..|.|.+..+.++.....+... +..+.-+.|+|..+.+++...+   ++.|.+||......+..+..  .|..+...++
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gic  215 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGIC  215 (673)
T ss_pred             cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcce
Confidence            9999999999988877777766 4456789999999887766542   77899999988877655443  2358899999


Q ss_pred             EcCCCCE-EEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-Ceeeecccc
Q 001358          586 FDTAKDQ-ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVL  663 (1092)
Q Consensus       586 ~~~~~~~-l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~  663 (1092)
                      |+|.+.. +++.+.|..|.+||....+....+....   +...++|+++|.+|++|...|.|..||++.. .++.....|
T Consensus       216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah  292 (673)
T KOG4378|consen  216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH  292 (673)
T ss_pred             ecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence            9998654 5668999999999999887777776543   4689999999999999999999999999854 678888999


Q ss_pred             cccceeeeecCCc
Q 001358          664 SDNLRKLSVNPIS  676 (1092)
Q Consensus       664 ~~~v~~~~~~~~~  676 (1092)
                      ...|++++|.+..
T Consensus       293 ~~sVt~vafq~s~  305 (673)
T KOG4378|consen  293 DASVTRVAFQPSP  305 (673)
T ss_pred             ccceeEEEeeecc
Confidence            9999999998765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=9.5e-19  Score=178.63  Aligned_cols=308  Identities=13%  Similarity=0.104  Sum_probs=221.6

Q ss_pred             CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccc
Q 001358          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  733 (1092)
                      -......+.+.+.|.+++|.|.                    ...+++++|+.-|+|-+|++...++.....+.+  ..|
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f--~~h  233 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF--TPH  233 (498)
T ss_pred             ceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEe--ccC
Confidence            3344555667788999999874                    345788999999999999996444443333333  348


Q ss_pred             cccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          734 ANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       734 ~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ...|.++.|+|. -..+++.+.||+|++-|+......           .++...             .....+..+.|+.
T Consensus       234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~v~s~~-------------~d~~~fs~~d~~~  289 (498)
T KOG4328|consen  234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------EVLSLD-------------TDNIWFSSLDFSA  289 (498)
T ss_pred             CccccceEecCCChhheeeeccCceeeeeeecchhhH-----------HHhhcC-------------ccceeeeeccccC
Confidence            999999999995 456888999999999887654210           001100             1445667788888


Q ss_pred             CCCEEEEEeC-CeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----eEeecccc
Q 001358          813 NDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----ISKLEGHS  886 (1092)
Q Consensus       813 dg~~l~~~sd-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----~~~l~~h~  886 (1092)
                      +...++.+.+ |.+.+||..+... ...+.-|...|+.++++|....+|||++.|++++|||++.-..    .-....|.
T Consensus       290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr  369 (498)
T KOG4328|consen  290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR  369 (498)
T ss_pred             CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence            8888888875 8999999987654 5666778889999999998888999999999999999986322    23334599


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcC---CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEE
Q 001358          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY  962 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lw  962 (1092)
                      ..|.+..|||++..|+|.+.|..|+|||..   ...... ..+.....+.. --.....+|.||..+++++ .-..|-|+
T Consensus       370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~~I~Hn~~t~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~  447 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-GTIPHNNRTGR-WLTPFKAAWDPDYNLIVVGRYPRPIDVF  447 (498)
T ss_pred             ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-ceeeccCcccc-cccchhheeCCCccEEEEeccCcceeEE
Confidence            999999999999889999999999999985   211111 11211111100 0135567899999999996 56779999


Q ss_pred             EcCCceeeeeeccCCCcCEEE-EEEecCCCEEEE-EeCCCcEEEEECCC
Q 001358          963 EAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFT-SFVDGTLSIHEASN 1009 (1092)
Q Consensus       963 d~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t-~s~Dg~i~vwd~~~ 1009 (1092)
                      |...++.+..+.......|.+ ..|.|-+..+++ ++..|.|+||--+.
T Consensus       448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence            999999887765555555655 468887774554 44567788886543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.82  E-value=2e-18  Score=168.38  Aligned_cols=409  Identities=11%  Similarity=0.119  Sum_probs=261.1

Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      -+.|||+|+|+|+++.- .+.|=|.++-+..+..    .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            36899999999999776 6888888875543321    12346888999999885 566778899999999999988888


Q ss_pred             EecCCcceEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      +.....++.+++|+|  || .+|.+...|-+|.+|.+.+..... +......+..++|+|||++.+.++.. +-...+.+
T Consensus        87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i  162 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI  162 (447)
T ss_pred             eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence            988889999999965  55 677788889999999998766543 33344566889999999999988742 22233333


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ..-....+++.+....   ...+.+.|+|||+.+++         ||.--.-.+.....  + -.+..++|+|.++++++
T Consensus       163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~--~-lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYER--G-LGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeee--c-cceeEEEeccccceEEe
Confidence            3333444555555544   56788999999987765         44221111111111  1 24788999999999999


Q ss_pred             EeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeecc
Q 001358          640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1092)
                      |+.|+.+|+.+--+-+.+..+-. -..                                      -.|.+..+-..+...
T Consensus       228 GsyD~~lrvlnh~tWk~f~eflh-l~s--------------------------------------~~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFLH-LCS--------------------------------------YHDPTLHLLEKETFS  268 (447)
T ss_pred             eccchhhhhhceeeeeehhhhcc-chh--------------------------------------ccCchhhhhhhhhcc
Confidence            99999999977554433322210 000                                      001110000000000


Q ss_pred             CccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCC
Q 001358          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  799 (1092)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  799 (1092)
                      +            -.-...++.|.|..-         ...+|......+.   .......+....+.+       +  .+
T Consensus       269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~YE---~~~~pv~~~~lkp~t-------D--~p  315 (447)
T KOG4497|consen  269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIYE---QQMTPVKVHKLKPPT-------D--FP  315 (447)
T ss_pred             h------------hhhcccccccCCCcc---------ccCccccchhhhh---hhhcceeeecccCCC-------C--CC
Confidence            0            001122344444321         0111111100000   000000000001111       1  11


Q ss_pred             CCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358          800 NSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      +..-.+.-++|++|..++++-.|   +.+.+||+...+....+. ...+|.+..|.| ....|+.+.....+++|.....
T Consensus       316 nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~  393 (447)
T KOG4497|consen  316 NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGP  393 (447)
T ss_pred             CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence            23456778999999999999976   569999998776654443 456899999999 7778888887788999988765


Q ss_pred             eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCc
Q 001358          877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ  909 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~  909 (1092)
                      .++..- +..-.|..+.|.-+|..++-.+.|.-
T Consensus       394 ~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  394 RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence            555433 34467999999999999999998863

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=6.6e-18  Score=164.63  Aligned_cols=289  Identities=14%  Similarity=0.196  Sum_probs=207.5

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC-------CCCCE
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-------PDGSL  410 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-------pdg~~  410 (1092)
                      ..+.|||||. -+.+-+.|..+.+|++...-.-.....++    .  ...+..+--.....|...+|-       |+..+
T Consensus        53 kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~----~--~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l  125 (406)
T KOG2919|consen   53 KGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPL----N--FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL  125 (406)
T ss_pred             ccceeCCCCc-eEEeecccCeeeEEecChhhcccCCCCcc----c--cccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence            3578999998 56777899999999985421111000000    0  000001111134567777764       67889


Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEeccccc---ceeEEEeeCCCCcEEEEEEeCCCcEEEEEC-CCCcee--EEE---
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF---  481 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~---~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~~~~~~--~~~---  481 (1092)
                      +|+.+.+.-|++||.-+|+...... .-.|..   ...+++|+|||.  .|+ ++....|+++|+ +.|+.-  +..   
T Consensus       126 ~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlf-aGykrcirvFdt~RpGr~c~vy~t~~~  201 (406)
T KOG2919|consen  126 FAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLF-AGYKRCIRVFDTSRPGRDCPVYTTVTK  201 (406)
T ss_pred             eeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEe-ecccceEEEeeccCCCCCCcchhhhhc
Confidence            9999999999999999998654322 123444   346899999999  455 455789999998 455432  211   


Q ss_pred             --ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       482 --~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                        .+..+.+.+++|+|. +...++.|+...++-++.....++...+.+|++.|+.+.|.+||+.|++++..   +..|..
T Consensus       202 ~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~  277 (406)
T KOG2919|consen  202 GKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILC  277 (406)
T ss_pred             ccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEEE
Confidence              233667888899876 45689999999999999999999999999999999999999999999999853   556999


Q ss_pred             EeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEE
Q 001358          560 WNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1092)
Q Consensus       560 wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l  637 (1092)
                      ||++. +..+..+..|....+.-.-....|++++|++|+.||.|++||+.+ |..+..+..+..  -++.++++|--.++
T Consensus       278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpil  355 (406)
T KOG2919|consen  278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPIL  355 (406)
T ss_pred             EeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCccccee
Confidence            99974 556666776662122223345678899999999999999999998 676666655433  48899999998888


Q ss_pred             EEEeCC
Q 001358          638 AVIANE  643 (1092)
Q Consensus       638 ~~~~~d  643 (1092)
                      |+++..
T Consensus       356 atssGq  361 (406)
T KOG2919|consen  356 ATSSGQ  361 (406)
T ss_pred             eeccCc
Confidence            887764

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=3.4e-18  Score=170.18  Aligned_cols=263  Identities=16%  Similarity=0.202  Sum_probs=185.2

Q ss_pred             cccCCCCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCC-ceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          330 LIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ..+|.+.+..+.-++-|+ .++|+=+..|.|.|||+..-- .+..-.+.+-+  .-.++  ...+.+|...=..++|||-
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~--s~~~P--l~t~~ghk~EGy~LdWSp~  222 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD--SEFRP--LFTFNGHKGEGYGLDWSPI  222 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc--cccCc--eEEecccCccceeeecccc
Confidence            346777888888777653 356677778999999985421 11110111111  00111  1237789999999999992


Q ss_pred             -CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC---ceeEEEec
Q 001358          408 -GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG  483 (1092)
Q Consensus       408 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~---~~~~~~~~  483 (1092)
                       -..|++|.-.+.|++|...+|.-.--...+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+   .++.+ +.
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kA  300 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KA  300 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ec
Confidence             234777877778999999987644333357789999999999998877 8999999999999999988   33433 88


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      |.+.|+.+.|+..  ..+|++|+.||+++|||++..   +++..++.|..+|+++.|+|...-.+.++.   .+.+|.+|
T Consensus       301 h~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiW  375 (440)
T KOG0302|consen  301 HNSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIW  375 (440)
T ss_pred             cCCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEE
Confidence            9999999999654  349999999999999999864   456789999999999999996654444332   27789999


Q ss_pred             eCCCCeE----------------EEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEE
Q 001358          561 NESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW  605 (1092)
Q Consensus       561 d~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iw  605 (1092)
                      |+..-.-                .+.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            9863211                01122222 23467788898874 4566666776 4444

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.80  E-value=4.2e-18  Score=169.53  Aligned_cols=250  Identities=15%  Similarity=0.172  Sum_probs=185.1

Q ss_pred             CCCCCeeEEEEecCCCEEEEE--eC-CeEEEEEcCC----------------ceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358          800 NSQEAVPCFALSKNDAYLFSA--SG-GVISLYIVMT----------------FKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~--sd-g~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                      +|.+.+..+..++-++-.+++  ++ |.|.||++..                .+.+.++.+|...-.+++|||...-.|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            477777777777765444444  44 9999999742                3456778899999999999995555688


Q ss_pred             EEeCCCeEEEEEcCCcee---eEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358          861 IGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      +|.--+.|++|...+|.-   ...+.+|+..|..|+|||. ...|||||.||+|+|||+..+....+...   ..|.   
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~---  302 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHN---  302 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccC---
Confidence            888889999999988752   3556789999999999995 57899999999999999998765443333   2232   


Q ss_pred             CCceEEEEecCCCEEEEE-eCCcEEEEEcCC---ceeeeeeccCCCcCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc
Q 001358          937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~---~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                      +.|..+.|+.+-.+||+| .||+++|||+++   ++.+.. +.-|..+|+++.|+|. ...|+++|.|..|.+||+....
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            269999999999999984 779999999974   445555 5679999999999984 5678888999999999987543


Q ss_pred             e---EEe--eccccccCCCC---ccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001358         1012 V---QCR--ILSTAYLRPTT---SCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus      1012 ~---~~~--~~~~~~~~~~~---~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
                      -   ...  ......+|++.   |.+.-..-.+.||++-+.++++.+.||.-.
T Consensus       382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV  434 (440)
T KOG0302|consen  382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV  434 (440)
T ss_pred             ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence            2   000  00111233331   222222225779998899999999999633

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.80  E-value=4.9e-18  Score=169.97  Aligned_cols=237  Identities=16%  Similarity=0.261  Sum_probs=187.9

Q ss_pred             eecCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358          391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      +..||+++|..++|+| +...||+||.|.+|.||.+-.+..    ......|.+|...|-.++|+|.... .|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            4789999999999999 778999999999999999875533    2345578999999999999999877 789999999


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC-ceEEEEEecCCCEE
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL  544 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l  544 (1092)
                      +|.+||+.+|+.+.++. |...|.+++|+  .||.++++.+.|+.|||||.++++.+..-..|.+ .-..+.|-.+|. +
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            99999999999999987 99999999995  5788999999999999999999988887766654 456677888998 6


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce-EEEEeCCCCC
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL  622 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~  622 (1092)
                      ++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.|.++.+.++. |-.|+.||.|.+....+ +.-+..-...
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            7777777779999999987654333332222 1356777788999888866 45899999999987653 3333322233


Q ss_pred             CCCceEEEccC
Q 001358          623 PENPRICFNKN  633 (1092)
Q Consensus       623 ~~v~~v~~s~~  633 (1092)
                      .+-..+.|-|.
T Consensus       310 epQRG~g~mPK  320 (472)
T KOG0303|consen  310 EPQRGMGFMPK  320 (472)
T ss_pred             Ccccccccccc
Confidence            34566777764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=2.8e-17  Score=165.67  Aligned_cols=300  Identities=14%  Similarity=0.187  Sum_probs=214.2

Q ss_pred             cccEEEEEEecCCc-EEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~-~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..++..+.|.+++. .+++++.|..|++|.+........+               ........+.  .|...|+++.|+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p   75 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP   75 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence            45688889988877 8999999999999998765321110               0112222333  4999999999999


Q ss_pred             CCCEEEEEeC-CeEEEEEcC--------C--------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001358          813 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       813 dg~~l~~~sd-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                      +|.+||+|+| |.+.+|-..        +        +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence            9999999985 889999765        2        345567888999999999999 999999999999999999999


Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee---eecCCCCcC------------CCCCce
Q 001358          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMT------------LAPSET  940 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~  940 (1092)
                      |+....+.+|...|..++|.|-++++++-+.|...+++.+.........-   +....+...            ...-..
T Consensus       155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            99999999999999999999999999999999877777665432211100   000000000            002356


Q ss_pred             EEEEecCCCEEEEE-----eCC-----cEEEEEcCCceeeeeeccCCCcCEEEEEEec--------CC---------CEE
Q 001358          941 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC---------RMV  993 (1092)
Q Consensus       941 ~l~~s~dg~~la~~-----~d~-----~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg---------~~l  993 (1092)
                      .++|+|||.+|++.     ..+     ..++|+-...+.....+++-..++..+.|+|        +.         +++
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            78999999999982     222     3456655433333333445566677777776        11         233


Q ss_pred             EEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358          994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus       994 ~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      +.......|+|||.++...++.....-|       ..+.  +++|++ |+..++..+.||-..+--+.
T Consensus       315 faiAt~~svyvydtq~~~P~~~v~nihy-------~~iT--Diaws~-dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  315 FAIATKNSVYVYDTQTLEPLAVVDNIHY-------SAIT--DIAWSD-DGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             EEEeecceEEEeccccccceEEEeeeee-------eeec--ceeecC-CCcEEEEeccCCceEEEEEc
Confidence            3333456899999999888877663322       2333  788998 68999999999977665543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=162.55  Aligned_cols=230  Identities=15%  Similarity=0.185  Sum_probs=167.4

Q ss_pred             cCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCC
Q 001358          744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG  823 (1092)
Q Consensus       744 ~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg  823 (1092)
                      |+..++++.+.+.-|++||.-.++..        ...+.+|...             .-....+++|+|||..|..|...
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lr--------aSy~~ydh~d-------------e~taAhsL~Fs~DGeqlfaGykr  179 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLR--------ASYRAYDHQD-------------EYTAAHSLQFSPDGEQLFAGYKR  179 (406)
T ss_pred             CccceeeeccccCceeeeeccccccc--------cchhhhhhHH-------------hhhhheeEEecCCCCeEeecccc
Confidence            55666777777777777765443220        0111111110             11234589999999999999999


Q ss_pred             eEEEEEc-CCceeeE---Ee----cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001358          824 VISLYIV-MTFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1092)
Q Consensus       824 ~i~iwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1092)
                      .|+++|+ ..|+.-.   ++    .+..+-|.+++|+|.+...+|+|+....+-||.-..+.++..+-+|.+.|+.+.|.
T Consensus       180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~  259 (406)
T KOG2919|consen  180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC  259 (406)
T ss_pred             eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec
Confidence            9999999 4443211   11    12356789999999888899999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC-ceeeee
Q 001358          896 DALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTCLKQ  972 (1092)
Q Consensus       896 pdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~-~~~~~~  972 (1092)
                      +||+.|.+|++ |-.|..||+....    ..+-.+..|......-.-....|+|++|++| .||.|++||+.+ |..+..
T Consensus       260 edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv  335 (406)
T KOG2919|consen  260 EDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV  335 (406)
T ss_pred             cCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc
Confidence            99999999985 6779999998633    2333333333211122334558999999996 899999999998 554554


Q ss_pred             eccCCCcCEEEEEEecCCCEEEEEeCC
Q 001358          973 WFPISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       973 ~~~~h~~~v~~l~fs~dg~~l~t~s~D  999 (1092)
                       ...|+..+..+.+.|-=.+++|++..
T Consensus       336 -~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  336 -TGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             -cccccccccceecCcccceeeeccCc
Confidence             55689999999999987778877654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=2.7e-16  Score=163.37  Aligned_cols=496  Identities=14%  Similarity=0.127  Sum_probs=297.1

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEeccccccee-EEEee-------CCCCcEEEEEEeCCC
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFS-------APCKQISVITCGDDK  465 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~-~~~~s-------~d~~~l~l~s~~~d~  465 (1092)
                      .|...|.|+.|+.+...+.+++++..+.-||+.+.+. ... .+  ...-|. .+-.-       ....  .++.++.||
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~-~~--p~df~pt~~h~~~rs~~~g~~~d--~~~i~s~DG   85 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA-KL--PDDFVPTDMHLGGRSSGGGKGSD--TLLICSNDG   85 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhh-hC--CcccCCccccccccccCCCCCcc--eEEEEcCCc
Confidence            4777788999998888777776665555556554332 111 11  111111 11010       0122  578888999


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      .+.+-+ +.++.-+.+..|.+.+.+-.|+  +||.-|++++.||.|++|.- ++-...++.....+|.|++|.|+.+.++
T Consensus        86 kf~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   86 RFVILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             eEEEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceE
Confidence            999998 8888888999999999998885  46778999999999999963 2333334455567899999999999888


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      .|.     .+.+++=.+.....+-..+.|.   +-|.++.|++..+.+++|++|-..+|||... ..+..-..|.  .+|
T Consensus       162 ~c~-----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~e--y~I  230 (737)
T KOG1524|consen  162 FCQ-----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEE--YAI  230 (737)
T ss_pred             Eec-----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeecccC-cccccCChhc--cce
Confidence            775     3347777777666677778887   9999999999999999999999999999754 4444444343  469


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      ++++|+|+ +.+++++.+ ++++   .                                                     
T Consensus       231 TSva~npd-~~~~v~S~n-t~R~---~-----------------------------------------------------  252 (737)
T KOG1524|consen  231 TSVAFNPE-KDYLLWSYN-TARF---S-----------------------------------------------------  252 (737)
T ss_pred             eeeeeccc-cceeeeeee-eeee---c-----------------------------------------------------
Confidence            99999999 667766653 3331   0                                                     


Q ss_pred             cccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEee-ecCCccccCcccccccCCcccc
Q 001358          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR-WPRNDLTLSTEATTKVPPRLYQ  784 (1092)
Q Consensus       706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~-~~~~~~~~~~~~~~~~~~~~~~  784 (1092)
                                               ....+.|..++||+||..++++...|.+.+=- ++..                  
T Consensus       253 -------------------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~------------------  289 (737)
T KOG1524|consen  253 -------------------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ------------------  289 (737)
T ss_pred             -------------------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhh------------------
Confidence                                     01345678889999999998888888765411 0000                  


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001358          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1092)
Q Consensus       785 ~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1092)
                                 +        +       -+.+=++. ....|.+-|+.++-+  ..-.....+...+++-  + +|+++.
T Consensus       290 -----------l--------~-------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~Y--~-hLvvaT  338 (737)
T KOG1524|consen  290 -----------L--------V-------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLGY--G-HLVVAT  338 (737)
T ss_pred             -----------h--------h-------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeece--e-EEEEEe
Confidence                       0        0       00011111 234566666665443  2222445666666654  3 333333


Q ss_pred             CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                       ...|++|.-........+.+....+.-+.-+ ...+++  ....+|.++..+......    ..+++...  .....=.
T Consensus       339 -s~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rt  408 (737)
T KOG1524|consen  339 -SLQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRT  408 (737)
T ss_pred             -ccEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecC----CCCCCccc--cccccee
Confidence             3468888766554444444444333222211 112222  233456666665422111    11111111  0111122


Q ss_pred             EecCCCEEEE--EeC-CcEEEEEc-CCceeeeeec-cCCCcCEEEEEEe----cCCCEEEEEeCCCcEEEEECCCCceEE
Q 001358          944 FHKDQTRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus       944 ~s~dg~~la~--~~d-~~v~lwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~t~s~Dg~i~vwd~~~~~~~~ 1014 (1092)
                      .|-....|+.  ..| ..+.+||. .+|+....-. -.|...|..++..    ++++.++.-...+.+.|=.+.+.....
T Consensus       409 lsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee  488 (737)
T KOG1524|consen  409 LSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEE  488 (737)
T ss_pred             eecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchh
Confidence            3333444555  233 45888998 6666543211 2345556666554    355667766666667766555443322


Q ss_pred             eeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358         1015 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1015 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      ++.-..   .       ....++|+  |...+++|-.|+.+.+|=.+...
T Consensus       489 ~I~KiG---T-------mVhtLawn--dttNiLcglqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  489 EIYKIG---T-------MVHTLAWN--DTTNILCGLQDTCFSVWYYPNEV  526 (737)
T ss_pred             hhhhhh---h-------hhhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence            222111   1       12346676  46789999999999999987544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.78  E-value=6e-19  Score=192.08  Aligned_cols=285  Identities=19%  Similarity=0.290  Sum_probs=220.8

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      +..|.||...|.|+.|...|. ++++|+.|..|+||..+++.++..                   +.||.+.|+.++.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~  242 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS  242 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence            456789999999999999998 699999999999999999999976                   889999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE---Eec
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG  483 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~---~~~  483 (1092)
                      +..++|+++.|..|++|.+..+..+.   .+.+|++.|++++|+|-      .+.+.||++++||..-.-.+..   ++.
T Consensus       243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~  313 (1113)
T KOG0644|consen  243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF  313 (1113)
T ss_pred             hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence            99999999999999999999998776   68899999999999994      3688899999999871111111   011


Q ss_pred             -CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCC-EEEEEecCCCCceeEEEEe
Q 001358          484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       484 -~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd  561 (1092)
                       ...-+.++.|  ..++..++|++.|+.-..|.+.-..      .+...+.-+.++.|-. +.+++-    .+..+.+|+
T Consensus       314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn  381 (1113)
T KOG0644|consen  314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN  381 (1113)
T ss_pred             ccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeee
Confidence             1123344444  4466778999999988888554221      1111222222332332 222222    266789999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      +.+|.+.+.+.+|.   ..+..+.++|-+..+ .+++.||...|||+-.|..++..... + ..+....||+||..++..
T Consensus       382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecC
Confidence            99999999999988   899999999987766 45899999999999999888776633 2 346788999999999999


Q ss_pred             eCCCeEEEEECCCCCee
Q 001358          641 ANENRIKILETPESNSV  657 (1092)
Q Consensus       641 ~~dg~i~iw~~~~~~~~  657 (1092)
                      ..-|.+.|.....+...
T Consensus       457 d~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  457 DDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             CCCCceEEeccCCCccc
Confidence            88899999887765443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=8.5e-18  Score=171.32  Aligned_cols=254  Identities=13%  Similarity=0.179  Sum_probs=185.3

Q ss_pred             CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeeccccc------ceeEEeeecCCCCcEEEEEECCC-CCEEEEEeCCC
Q 001358          346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS------MLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH  418 (1092)
Q Consensus       346 g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~------~~~~~~~l~~h~~~V~~l~~spd-g~~las~~~d~  418 (1092)
                      |+ ++|.|+.|..|.|||+.--..+.    +..-+....      ..-+.....+|+..|-+++|+.+ ...||+||.|.
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~  266 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK  266 (463)
T ss_pred             cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence            55 79999999999999986432221    000000000      00012235589999999999985 56789999999


Q ss_pred             EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCC
Q 001358          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN  498 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~  498 (1092)
                      +|++||+.+|++..   ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+........-...+.|-.++|.+...
T Consensus       267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE  342 (463)
T ss_pred             eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence            99999999998766   67789999999999998776 899999999999999885333222222556788889877643


Q ss_pred             ccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001358          499 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  577 (1092)
Q Consensus       499 ~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  577 (1092)
                       ..++++..||+++-+|++.. ++..++..|..+|.++++++.-..+++.+   ..++.|.+|+...-... ....|...
T Consensus       343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~  417 (463)
T KOG0270|consen  343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFK  417 (463)
T ss_pred             -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-cccccccc
Confidence             57888899999999999987 67889999999999999999776655443   23778999998644331 12222222


Q ss_pred             CCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceE
Q 001358          578 HNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       578 ~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~  613 (1092)
                      -+...|.++.|+-..+ +.|+..+.++|||+.+...+
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            2456777888886655 45777888999999876543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=2.9e-16  Score=163.07  Aligned_cols=496  Identities=12%  Similarity=0.175  Sum_probs=286.0

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEE-ecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE--CCCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW--SPDG  408 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iw-d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~--spdg  408 (1092)
                      .|+.-|.|+.|+.+.. ++.+++ |..+.+| |+.+.. .....++--+       +.   ...|   +....-  -...
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~~d-Dh~~~~~~~~~~~s-~~~~~~p~df-------~p---t~~h---~~~rs~~~g~~~   75 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFVSD-DHQIFKWSDVSRDS-VEVAKLPDDF-------VP---TDMH---LGGRSSGGGKGS   75 (737)
T ss_pred             ccceeEEeecccccce-EEEecc-CceEEEeecccchh-hhhhhCCccc-------CC---cccc---ccccccCCCCCc
Confidence            5666788999999987 555554 4555555 544432 2111111000       00   0001   000000  0123


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      ..++.++.||.+.|-+-... .-+   ...+|.+.|.+-.|+|||.  -|+++|.||.|++|. ++|-...++.....+|
T Consensus        76 d~~~i~s~DGkf~il~k~~r-VE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v  148 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR-VER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESI  148 (737)
T ss_pred             ceEEEEcCCceEEEecccch-hhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCcee
Confidence            56888889998888875442 122   4678999999999999999  799999999999999 7777666666678899


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      .|++|.|+.+ ..+++.  .+.+.+=-+.....+..+..|.+-|.++.|++..+.+++++.    +-...+||.. |..+
T Consensus       149 ~c~~W~p~S~-~vl~c~--g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~L  220 (737)
T KOG1524|consen  149 RCARWAPNSN-SIVFCQ--GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANL  220 (737)
T ss_pred             EEEEECCCCC-ceEEec--CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-Cccc
Confidence            9999987654 344443  355666666777778889999999999999999999999986    6779999965 4444


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ..-..|.   .+|++++|+|+ ..++.+|. +++|            +..+ ....|..++||+||..+++|+..|.+.+
T Consensus       221 f~S~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  221 FTSAAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ccCChhc---cceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEE
Confidence            4555555   89999999999 55565554 3444            2211 2345889999999999999999988765


Q ss_pred             EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1092)
                      =..-+.+...                                       +..-++......|.+-|+..+   .+..+.+
T Consensus       283 A~~ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~~---v~d~LE~  320 (737)
T KOG1524|consen  283 AYAIEQQLVS---------------------------------------GNLKATSKSRKSITVRDVATG---VQDILEF  320 (737)
T ss_pred             eeeehhhhhh---------------------------------------ccceeEeeccceEEeehhhhh---HHHHhhC
Confidence            3322221110                                       111111112222333332211   1122222


Q ss_pred             CCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  808 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~  808 (1092)
                      |     ..+....  -.-..|+++.+. .+++|.-.                 -|++.     ..++.    .+..+.-+
T Consensus       321 p-----~rv~k~s--L~Y~hLvvaTs~-qvyiys~k-----------------nwntp-----iiidg----re~tr~li  366 (737)
T KOG1524|consen  321 P-----QRVVKFS--LGYGHLVVATSL-QVYIYSEK-----------------NWNTP-----IIIDG----REDTRNLI  366 (737)
T ss_pred             c-----cceeeee--eceeEEEEEecc-EEEEEecC-----------------CccCc-----EEEec----cccchhHh
Confidence            2     2333333  222334444333 44444311                 12211     01010    00000000


Q ss_pred             EEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEE--eCCCeEEEEEc-CCceeeE
Q 001358          809 ALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS  880 (1092)
Q Consensus       809 ~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg--~~dg~v~iwd~-~~~~~~~  880 (1092)
                      .  ...+++......++.+|..+ |+.....+.+...     -..+.+.   ...|+.-  .....+.+||. .+|+...
T Consensus       367 e--q~ek~fli~dgsSi~lytye-gR~~~np~~Pg~~~dlL~~rtlsLa---ndtLaird~ad~kvlhlFd~istgk~qg  440 (737)
T KOG1524|consen  367 E--QGEKYFLILDGSSIWLYTYE-GRLHLNPRYPGSQIDLLTWRTLSLA---NDTLAIRDNADPKVLHLFDLISTGKRQG  440 (737)
T ss_pred             h--hhhhheEEecCcEEEEEEec-CceecCCCCCCcccccccceeeecc---cceEEeecCCCCeeEEeccCCCCCcccC
Confidence            0  01123333333556676654 2222222211111     1233333   2244432  33346788998 7776542


Q ss_pred             e--eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358          881 K--LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       881 ~--l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      .  +-.|...|..++..    ++.+.++.....+.+.|=.+++-..        .+.....+..|..++|+..-+.|+--
T Consensus       441 Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgk--------ee~I~KiGTmVhtLawndttNiLcgl  512 (737)
T KOG1524|consen  441 DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGK--------EEEIYKIGTMVHTLAWNDTTNILCGL  512 (737)
T ss_pred             CccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCc--------hhhhhhhhhhhhhhhhccccceeeee
Confidence            2  22366667666664    4557788888888888877765211        11122223468899999998888878


Q ss_pred             eCCcEEEEEcCC
Q 001358          955 HETHLAIYEAEE  966 (1092)
Q Consensus       955 ~d~~v~lwd~~~  966 (1092)
                      .|+.+.||-..+
T Consensus       513 qDt~fsVWy~pn  524 (737)
T KOG1524|consen  513 QDTCFSVWYYPN  524 (737)
T ss_pred             ccceEEEEEcCC
Confidence            999999997754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=9.7e-18  Score=167.88  Aligned_cols=239  Identities=15%  Similarity=0.183  Sum_probs=180.0

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC-
Q 001358          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-  407 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-  407 (1092)
                      ...||+++|..++|.|-....+|+||.|.+|.||++..+.......            -....|.||...|..++|+|. 
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt------------epvv~L~gH~rrVg~V~wHPtA  143 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT------------EPVVELYGHQRRVGLVQWHPTA  143 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc------------cceEEEeecceeEEEEeecccc
Confidence            4579999999999999888899999999999999998776554322            112338999999999999995 


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .+.|++++.|.+|.+||+.+|+.+.   ++. |...|.++.|+.||.  ++++.+.|+.|+|||..+++.+..-.+|.+.
T Consensus       144 ~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  144 PNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             hhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCC
Confidence            5788899999999999999998665   455 999999999999999  8999999999999999999999888888764


Q ss_pred             eEE-EeecccCCccEEEEEe---cCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358          488 VYS-LCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       488 v~~-i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      -.. +.|  -.++.++.+|.   .+..+-+||....+....+.  .....|.---|.+|...++.++   .||+.|+.|.
T Consensus       218 k~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyE  292 (472)
T KOG0303|consen  218 KPARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFE  292 (472)
T ss_pred             CcceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEE
Confidence            322 223  34556555543   46789999987766543222  2334566667889999998887   4688899999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1092)
                      +......-.+-..-....+-..+.|-|..
T Consensus       293 it~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  293 ITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             ecCCCceeEEecccccCCccccccccccc
Confidence            87665322211111112355666777653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.5e-16  Score=169.54  Aligned_cols=561  Identities=15%  Similarity=0.160  Sum_probs=326.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC----------CCcEEEEEEeCCC
Q 001358          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK  465 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d----------~~~l~l~s~~~d~  465 (1092)
                      ...-.++.|+|.| +||.|+.. .|.+-|..+-+.++   .+.-|...|+.+.|.|-          ...++++++...|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            3446778899866 77777665 48888988766555   67789999999999763          2456788999999


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCc--cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCC
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR  542 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~  542 (1092)
                      .|.+||...+..+..+..|..++..++|.+..+.  .+|+......++.+|+.++++....+........++.+.| |.+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            9999999999999999999999999999876554  4778888889999999999999888877776777788887 444


Q ss_pred             EEEEEecCCCCceeEEEEeCC-------CCeEEEEEeeccc----------------cCCc------eEEEEEcCCCCEE
Q 001358          543 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL----------------QHNS------VSVVHFDTAKDQI  593 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~~~------v~~~~~~~~~~~l  593 (1092)
                      .+...+.    .+.+.+-+.-       .|+..+.-..|..                ....      ...++|+|.-+.+
T Consensus       170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            4444332    3334443321       1222222211110                0000      1124667876666


Q ss_pred             EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC--CEEEEEeCCCeEEEEECCCCCeeeec-----cc-ccc
Q 001358          594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----GV-LSD  665 (1092)
Q Consensus       594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~-----~~-~~~  665 (1092)
                      +-......+.++|++-..++..+..+.+.  +.-+.+-|++  ..|.+...||.+.+|-.+.-......     .. ...
T Consensus       246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~  323 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGE  323 (1062)
T ss_pred             EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhcccccc
Confidence            66667788999999998998888776553  4566666654  57899999999999987652111111     00 001


Q ss_pred             cceeeeecCCcccccccccCCceeecCCCCCC-cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEec
Q 001358          666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN  744 (1092)
Q Consensus       666 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~  744 (1092)
                      .+.++.  +....         ..+.+...|. ...++.--.+|...+|++..+.........     ...-+..+.|..
T Consensus       324 Q~~~vr--~m~~~---------rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~  387 (1062)
T KOG1912|consen  324 QVHVVR--PMEEF---------RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNL  387 (1062)
T ss_pred             ceEEEe--echhc---------ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccC
Confidence            111111  11000         0000000122 333444445677778886532211110000     000000111110


Q ss_pred             CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCe
Q 001358          745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV  824 (1092)
Q Consensus       745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~  824 (1092)
                      ...           .+..                 ..         +......+ +|.....+....|-.++-       
T Consensus       388 ~~~-----------~v~k-----------------~~---------l~~LS~dg-~h~sGs~~~~~~p~p~~t-------  422 (1062)
T KOG1912|consen  388 STK-----------LVGK-----------------TS---------LISLSDDG-SHSSGSTCVRMRPMPELT-------  422 (1062)
T ss_pred             cee-----------ehhh-----------------cc---------ccchhhcC-CCCCCceeeecccCcccc-------
Confidence            000           0000                 00         00000000 133333333322211110       


Q ss_pred             EEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE
Q 001358          825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS  904 (1092)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~  904 (1092)
                                  .+...+.+. +....-|    ++|.|...|+|.++|+.++..-..+..|+..|.++.|-.... |++.
T Consensus       423 ------------~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSf  484 (1062)
T KOG1912|consen  423 ------------KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSF  484 (1062)
T ss_pred             ------------eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEe
Confidence                        011111111 1122233    899999999999999999999999999999999999976543 4433


Q ss_pred             e----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeee
Q 001358          905 G----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW  973 (1092)
Q Consensus       905 s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~  973 (1092)
                      +          .-+.+.|-|+.+|..+..+-++.++.     .+|..+..|.-|++|++. .+.-+.+||+.+..+++..
T Consensus       485 sys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m  559 (1062)
T KOG1912|consen  485 SYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM  559 (1062)
T ss_pred             eeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence            2          23457788998876444333333322     479999999999999994 7788999999887776542


Q ss_pred             ccCCCcC-EEEEEEe-cC----------------CCEEEEEeCCCcEEEEECCCCceEEe-ecc-ccccCCCCccCcccc
Q 001358          974 FPISSVP-ISQATFS-CD----------------CRMVFTSFVDGTLSIHEASNLEVQCR-ILS-TAYLRPTTSCLHVYP 1033 (1092)
Q Consensus       974 ~~~h~~~-v~~l~fs-~d----------------g~~l~t~s~Dg~i~vwd~~~~~~~~~-~~~-~~~~~~~~~~~~v~~ 1033 (1092)
                      .  -.-+ |+.+.|+ |.                .+..++.+.|.  +++.+.......+ ... .....+    ....-
T Consensus       560 S--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es--~~~~~~~~a~~~sdgsq~~~a~es----fafal  631 (1062)
T KOG1912|consen  560 S--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVES--RIYHITLSALVVSDGSQVNTAWES----FAFAL  631 (1062)
T ss_pred             h--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccc--hheehhhhhhhhccccchhhHHHH----HHHHH
Confidence            2  2334 8889998 32                12344433232  3333222111100 000 000000    00111


Q ss_pred             eEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358         1034 HAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1034 ~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      +++||-   +..++.|..+|.+.+||+.-
T Consensus       632 ~~mAwk---~d~lv~GD~~GNl~~WDlg~  657 (1062)
T KOG1912|consen  632 CAMAWK---DDILVVGDVEGNLVVWDLGR  657 (1062)
T ss_pred             Hhhhcc---CCeeEeecccCceeEEeccc
Confidence            345665   47999999999999999753

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.77  E-value=8.6e-17  Score=157.15  Aligned_cols=337  Identities=12%  Similarity=0.155  Sum_probs=222.1

Q ss_pred             EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceE
Q 001358          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~~  613 (1092)
                      .+|||+|+++++++.     ..+.+-|..+-+..+.+...    +.|..+.|..|..++++ ...++.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            689999999999973     45888888887776666653    36778889999888877 568889999999988877


Q ss_pred             EEEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecC
Q 001358          614 TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                      ..+...  ..++..++|||||+.+... ..+-.|.+|.+.+........                               
T Consensus        85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------  131 (447)
T KOG4497|consen   85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------  131 (447)
T ss_pred             EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence            777643  3568999999999766554 458899999988763322110                               


Q ss_pred             CCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCc
Q 001358          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~  772 (1092)
                                                              ....+..++|.+||++.+..+.....-.+++.        
T Consensus       132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~--------  163 (447)
T KOG4497|consen  132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS--------  163 (447)
T ss_pred             ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence                                                    11224667788888866655543111111000        


Q ss_pred             ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001358          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL  849 (1092)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1092)
                            ..+-|.+...     +.+    ..-..+.+.|+|||..+|+-.   +-.|..|..            .-.+..+
T Consensus       164 ------~c~~W~ll~~-----f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v  216 (447)
T KOG4497|consen  164 ------SCKAWILLKE-----FKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV  216 (447)
T ss_pred             ------hhHHHHHHHh-----cCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence                  0111211111     111    233345677888877777654   223333322            2346677


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------------------------------------------
Q 001358          850 AFNPHDNNVIAIGMDDSTILIYNARSSEV---------------------------------------------------  878 (1092)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~---------------------------------------------------  878 (1092)
                      +|+| .+++|++|+.|+.+||-+--+.+.                                                   
T Consensus       217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~  295 (447)
T KOG4497|consen  217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI  295 (447)
T ss_pred             Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence            7888 777888888887777754322211                                                   


Q ss_pred             ---------eEeec------cccCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001358          879 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       879 ---------~~~l~------~h~~~V~~l~~spdg~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1092)
                               +..++      ...-.+..++||+|..+++|-..  -..+-+||+...+     .........    +|..
T Consensus       296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----pira  366 (447)
T KOG4497|consen  296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIRA  366 (447)
T ss_pred             hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----ceeE
Confidence                     11111      11234667999999999998643  3569999998744     222222222    5899


Q ss_pred             EEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358          942 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       942 l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
                      ..|.|....|++. ....+++|......++....  .+-.|..+.|.-+|..++-++.|-
T Consensus       367 f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~--~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK--KGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             EEeCCCCceEEEEcCCceEEEEcCCCceEEecCC--CCceeeeEEecCCCcEEEEEcCCc
Confidence            9999999888884 55579999988766666543  347899999999999999998884

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.1e-17  Score=162.55  Aligned_cols=302  Identities=12%  Similarity=0.110  Sum_probs=215.4

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceee-eeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      +...+.+|.+.|.++.||.+|+ +||+|+.|..++||+++.--..++ +.+.             ..-..|...|.|++|
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~-------------~~~~~H~SNIF~L~F  113 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIG-------------VMEHPHRSNIFSLEF  113 (609)
T ss_pred             hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCce-------------eccCccccceEEEEE
Confidence            4466789999999999999998 799999999999999875432221 1111             012346789999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-ee--EEE
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT--YSF  481 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~--~~~  481 (1092)
                      ....++|.+|..+++|...|+++.+.+... .-....+.|..+..+|...  .+++.+.++.|.+||..... ..  ..+
T Consensus       114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~  190 (609)
T KOG4227|consen  114 DLENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLP  190 (609)
T ss_pred             ccCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeee
Confidence            999999999999999999999997655421 1112334899999999988  79999999999999987654 22  222


Q ss_pred             ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-------ecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ........++.|+|.. ..+|++.+..+-+-+||.+.......       +........++.|+|+|+.+.+.-.    .
T Consensus       191 AN~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~  265 (609)
T KOG4227|consen  191 ANSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----G  265 (609)
T ss_pred             cCCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----c
Confidence            3334456677787653 36888999999999999886554321       1111223467889999999987643    2


Q ss_pred             eeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------
Q 001358          555 SFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--------------------  610 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--------------------  610 (1092)
                      ..-.+||.-+..+...-..|..    ....+.+++|..+- .+++|+.+-.|++|.+...                    
T Consensus       266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~  344 (609)
T KOG4227|consen  266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI  344 (609)
T ss_pred             CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence            2345677776544322222221    11346778887764 4999999999999987531                    


Q ss_pred             ---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          611 ---QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       611 ---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                         ..+..+.+|  ...++.+.|+|...+|++.+-...++||.-.
T Consensus       345 ~i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  345 FIEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence               122334444  4457899999999999999999999999754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.2e-18  Score=174.50  Aligned_cols=302  Identities=16%  Similarity=0.232  Sum_probs=234.5

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+...|.+|.+.|..|.|...|. +|++|+.|..|.+||+.++.....+                  ..||...|....|
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF  193 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF  193 (559)
T ss_pred             hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence            34467889999999999999998 7999999999999999998877532                  5689999998889


Q ss_pred             CC--CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001358          405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1092)
Q Consensus       405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  481 (1092)
                      -|  +.+.|++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|+.++.....+ 
T Consensus       194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~  272 (559)
T KOG1334|consen  194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV  272 (559)
T ss_pred             cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence            88  5678999999999998776544444434457789999999999999887 7999999999999999887654333 


Q ss_pred             --ecCCc---ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce------EEe------cCCCCceEEEEEecCCCEE
Q 001358          482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       482 --~~~~~---~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~------~~~~~~i~~~~~s~dg~~l  544 (1092)
                        ..+..   ...+++..|. +...+++++.|..+++||.+.....      ..+      ......|++++|+.++.-|
T Consensus       273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl  351 (559)
T KOG1334|consen  273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL  351 (559)
T ss_pred             eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence              22333   3567777665 3358999999999999997653322      111      1223369999999877766


Q ss_pred             EEEecCCCCceeEEEEeCCCCe------------E-EEEEeeccccCCceEEEE-EcCCCCEEEEEeCCCeEEEEECCCC
Q 001358          545 FSCGTSKEGESFLVEWNESEGA------------I-KRTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~------------~-~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      ++...    +..|+++....+.            . .+.++||.. ...|..+. |.|..+++++|+.-|.|.||+-.++
T Consensus       352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN-~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN-SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             eeeec----ccceEEeccccccCCCCCCCcchhhccchhhccccc-ccccceeeeccCccceEEecCccceEEEEecchh
Confidence            66554    4458888554322            2 234888872 23477764 5788899999999999999999999


Q ss_pred             ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +.+..+.+..+  .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus       427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            99999887766  5899999999999999999999999987544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=4.6e-18  Score=193.54  Aligned_cols=251  Identities=14%  Similarity=0.159  Sum_probs=197.1

Q ss_pred             CceEEeecCCCce---EEEEEcCcCcEEEEecCCC---CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358          336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       336 ~V~~v~~spdg~~---llasg~~d~~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      .-..++|.+.|..   ++|.|..||.|.+||...-   .....                ......|++.|..+.|++.+.
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~----------------la~~~~h~G~V~gLDfN~~q~  129 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEV----------------LATKSKHTGPVLGLDFNPFQG  129 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHH----------------HhhhcccCCceeeeeccccCC
Confidence            6678899888775   6899999999999998762   11110                011556999999999999655


Q ss_pred             -EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc--
Q 001358          410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA--  486 (1092)
Q Consensus       410 -~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--  486 (1092)
                       +||+|+.||.|.|||+..-+.-.... -....+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+..  
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence             99999999999999998744322110 1124567999999987766 799999999999999999988877766554  


Q ss_pred             ceEEEeecccCCccEEEEEecCC--eEEEEEcCCCC-ceEEecCCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeC
Q 001358          487 PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      .+..+.|+|+...+++++...|+  .|.+||++... ...++..|...|.++.|++.+ ++|++++.    |+.|.+|+.
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~  283 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNP  283 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecC
Confidence            46788999876554444444444  49999998655 455778999999999999977 77888875    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      ++++.+..+....   +.+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus       284 ~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  284 NTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            9999999998755   8899999999887 66778999999999987654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=1.8e-17  Score=174.15  Aligned_cols=262  Identities=15%  Similarity=0.198  Sum_probs=196.5

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-----CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      .+..|...|++++|.|-...|++++.||++++|+++     ....+.++.++.+|.++|.|++++++++  .+++|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            477799999999999999999999999999999993     3344667889999999999999999999  799999999


Q ss_pred             cEEEEECC------CC----ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC--ceE
Q 001358          466 TIKVWDAV------TG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT  533 (1092)
Q Consensus       466 ~i~vwd~~------~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~  533 (1092)
                      +|+.|++.      ..    .....+.||.+.|+.++++..++  .|++++.||+++.|+...... .++.....  -..
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            99999543      11    23457789999999999977664  799999999999998766555 33332222  223


Q ss_pred             EEEEecCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358          534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       534 ~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      ++.+.... ...++...    .+.-.+.+...+..+..+.....    ....+..+..+|.+...+++.+|+.|+++|..
T Consensus       444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            34443322 11222111    11223344444444444432221    12457788899999999999999999999999


Q ss_pred             CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccc
Q 001358          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                      ++..+.....+  ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus       520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            99999888766  446899999999999999999999999999877666554433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1e-16  Score=166.96  Aligned_cols=246  Identities=17%  Similarity=0.159  Sum_probs=163.9

Q ss_pred             EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEEeecccCCccEEEEEecCCeEEE
Q 001358          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA  513 (1092)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~v  513 (1092)
                      .++.||++.|+|++|+.||.  +|++|+.|-.+.|||.-..+.++.+ .||...|.++.|.|..+..++++|+.|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            36889999999999999999  8999999999999999988888877 68999999999999999999999999999999


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CE
Q 001358          514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ  592 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  592 (1092)
                      +|++..+....                         +   +        ...+..+.+..|.   ..|..++-.|++ +.
T Consensus       122 fdl~~~~~~~~-------------------------d---~--------~~~~~~~~~~cht---~rVKria~~p~~Pht  162 (758)
T KOG1310|consen  122 FDLDSSKEGGM-------------------------D---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHT  162 (758)
T ss_pred             Eeccccccccc-------------------------c---c--------Cccchhhhhhhhh---hhhhheecCCCCCce
Confidence            99875332110                         0   0        0011122233444   678888888888 77


Q ss_pred             EEEEeCCCeEEEEECCCCceEE--------EEeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEEEECCCC-Ceeeeccc
Q 001358          593 ILAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAGV  662 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~  662 (1092)
                      +.++++||+++-+|++....-.        ........-...++..+| +..+|++|+.|-..++||.... +.+..-..
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            8899999999999998632110        001111122356889998 5678999999999999995321 11111000


Q ss_pred             ----ccccceeee-ecCCcccccccccC------CceeecCCCCCCcccceeeccccccceeceeeccCcccee
Q 001358          663 ----LSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       663 ----~~~~v~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1092)
                          ......|+. |+|......-+...      ..+.|    +|+|..++..-....|.++++...+......
T Consensus       243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence                111111222 22322211111111      12344    6788877777766778888877655443333

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.9e-15  Score=141.63  Aligned_cols=286  Identities=12%  Similarity=0.129  Sum_probs=197.7

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .|.+-+++|.+++++++..+|.|-+..+..-..   +....         .....+..    ..+|..++..++|.  ..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~~---------~gk~~iv~----eqahdgpiy~~~f~--d~   73 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAEP---------PGKLKIVP----EQAHDGPIYYLAFH--DD   73 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccCC---------CCCcceee----ccccCCCeeeeeee--hh
Confidence            355567899999999999999999998764321   11100         11111111    23599999999998  46


Q ss_pred             EEEEEeCCeEEEEEcCCcee------eEEe-------cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358          816 YLFSASGGVISLYIVMTFKT------ILTI-------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~~~~------~~~~-------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      +|++++||.|+-|.......      ....       ...-..|+++-+.|..+ -++.++.|+.++-||+++|+....+
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCEEEEEE
Confidence            78889999999998754321      1111       11235789999999444 4555558999999999999999999


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC----CCCCceEEEEecCCCEEEEEeCCc
Q 001358          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH  958 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~~s~dg~~la~~~d~~  958 (1092)
                      +||++.|.+++--.....+.||++||++||||.++++...  .+...+....    .+.+|  .+..-+..+|++|....
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~  228 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK  228 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence            9999999999985566788999999999999999976444  2222222111    11223  45556778999988889


Q ss_pred             EEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEE
Q 001358          959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAA 1038 (1092)
Q Consensus       959 v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1038 (1092)
                      +.+|.+.+.++...+.  -..++..+.|-.|  .+++++..+.|.-|.+. |.+.....      ..  ....++.+...
T Consensus       229 lslwhLrsse~t~vfp--ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~  295 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFP--IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQT  295 (325)
T ss_pred             eeEEeccCCCceEEEe--cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccC
Confidence            9999999988877643  3567888888654  67788888899999886 43332222      11  12234444555


Q ss_pred             CCCCCCEEEEEeCCCcEEEEe
Q 001358         1039 HPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1039 ~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      +|  -..+-.++..+.+.++.
T Consensus       296 ~p--~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  296 SP--IKFISIAGFSNKLHILK  314 (325)
T ss_pred             Cc--eEEEEecccceeeeeee
Confidence            66  35666777777777753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=8.8e-17  Score=158.52  Aligned_cols=292  Identities=13%  Similarity=0.172  Sum_probs=203.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCC-CceE
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APG-LGCT  533 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~-~~i~  533 (1092)
                      .++++-..|.|++||..+|+.+..|+++...++.+.|........+.+++.||+|++||++.......+.  .+. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            6788888999999999999999999999999999999875556789999999999999999877655433  333 3566


Q ss_pred             EEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE-EEEEe-eccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Q 001358          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      +++..-.++.++++..-...+..|.+||.+..+. ++.+. .|.   +.|+++.|+|.. +.|++||.||-|.+||++..
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            6666667888888776666688899999998776 55543 344   899999999975 67889999999999999754


Q ss_pred             c----eEEEEeCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccC
Q 001358          611 Q----LLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  685 (1092)
Q Consensus       611 ~----~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  685 (1092)
                      .    ++.++.   ....|..+.|..++ +.+.+.+..++..+|+++.+.....+....-..... ..         -..
T Consensus       199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~-r~---------~~~  265 (376)
T KOG1188|consen  199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDL-RK---------EDN  265 (376)
T ss_pred             cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhH-Hh---------hhh
Confidence            2    223332   23458899999876 458888899999999999886444333211100000 00         000


Q ss_pred             CceeecCCCCCCcccceeecc-ccccceeceeeccCc-cceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358          686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       686 ~~~~~~~~~s~d~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                      ....++.....++...+.++. .++..++-+....+. ..........+|..-|.++.|...+..+.+++.||.+.+|..
T Consensus       266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            011112221233444444443 566666665432221 222233344557777888899989999999999999999985


Q ss_pred             c
Q 001358          764 P  764 (1092)
Q Consensus       764 ~  764 (1092)
                      +
T Consensus       346 ~  346 (376)
T KOG1188|consen  346 E  346 (376)
T ss_pred             C
Confidence            3

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.73  E-value=3.5e-16  Score=150.32  Aligned_cols=260  Identities=18%  Similarity=0.220  Sum_probs=186.5

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCc-------CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d-------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      .+|..|.++||.++-+|-.+++|++...+       -.+.||.+........  ..-       ......+-+.+-+.|.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~t-------lE~v~~Ldteavg~i~  127 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SST-------LECVASLDTEAVGKIN  127 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cch-------hhHhhcCCHHHhCcee
Confidence            45677889999999999988899987653       2367888754321100  000       0000111224566999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCCccc-eE--EecccccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCC
Q 001358          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QL--EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~-~~--~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      |+.|.|++..||+-. |..|.+|+++.+..+.. ..  .-.+|....++-+|+|  ||.  .+++. .|+++..||+++.
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~  203 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTM  203 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccch
Confidence            999999999999875 77799999998765211 10  1113566788999999  666  45554 4899999999998


Q ss_pred             ceeEEE-ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCCceEEEEEecCCCEEE-EEecCCC
Q 001358          476 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLF-SCGTSKE  552 (1092)
Q Consensus       476 ~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~-~~~~~~~  552 (1092)
                      ++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ ++..+..|.+.+.++.|+|.-..|+ +++.   
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---  279 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---  279 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence            887776 5688899999998764 3689999999999999998755 5668899999999999999766555 4443   


Q ss_pred             CceeEEEEeCCCCe-----------------------------EEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeE
Q 001358          553 GESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVI  602 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i  602 (1092)
                       +..|.+|...+-.                             .+.++..|.   +.|++++|+....++++ -+.||.+
T Consensus       280 -Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  280 -DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             -CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceE
Confidence             5567777433211                             123445555   89999999988887654 7899998


Q ss_pred             EEEECC
Q 001358          603 KIWDMN  608 (1092)
Q Consensus       603 ~iwd~~  608 (1092)
                      .|=.+.
T Consensus       356 iIs~V~  361 (370)
T KOG1007|consen  356 IISSVP  361 (370)
T ss_pred             EeecCC
Confidence            876553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=6.6e-17  Score=153.42  Aligned_cols=289  Identities=17%  Similarity=0.214  Sum_probs=199.3

Q ss_pred             CcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeec-CCCCcEEE
Q 001358          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR  401 (1092)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~  401 (1092)
                      |......|++|...|+++.|-.+++  |.+|..-|.|++|++.+...+..                   +. .|...|+.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~   61 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN   61 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence            3444577889999999999999996  78899999999999999876543                   33 36788999


Q ss_pred             EEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC-c-----------EEE
Q 001358          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK-T-----------IKV  469 (1092)
Q Consensus       402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~-~-----------i~v  469 (1092)
                      +.--|+ ..|.+-+.|..+.+|++..+..+      ..|.-.++++-|.+-.    ++..+... .           +.+
T Consensus        62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfS----l~~~~k~~eqll~yp~rgsde~h~  130 (323)
T KOG0322|consen   62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFS----LVKKPKNSEQLLEYPSRGSDETHK  130 (323)
T ss_pred             eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccce----eccCCCcchhheecCCcccchhhh
Confidence            998887 56777789999999999875432      2355566666665421    11111111 1           111


Q ss_pred             EECCCCceeEEE----ecCCcceEEEeecccC-CccEEEEEecCCeEEEEEcCCCCceE----------EecCCCCceEE
Q 001358          470 WDAVTGSRTYSF----EGHGAPVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTR  534 (1092)
Q Consensus       470 wd~~~~~~~~~~----~~~~~~v~~i~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~i~~  534 (1092)
                      -|......++..    .+-.+.+.+..+.... ..-++++|..+|.+.+||+.++....          ....|..++.+
T Consensus       131 ~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls  210 (323)
T KOG0322|consen  131 QDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS  210 (323)
T ss_pred             hccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCccee
Confidence            111111111111    1123344444422221 22357788899999999999874333          34557778999


Q ss_pred             EEEecCCCEEEEEecCCCCceeEEEEeCC--CCeEE-EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358          535 MAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      +.+.+.-..=++++.    ...+..|+++  ++.+. +....  ..+..|..+.+-||++.+++++.|+.||||+.++.+
T Consensus       211 ldyas~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~--lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~  284 (323)
T KOG0322|consen  211 LDYASSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEIT--LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN  284 (323)
T ss_pred             eeechhhcCCcCCCc----cccceeeeeccccCcccccceEE--ecCCCccceEEccCCcEEeecccCCcEEEEEeccCC
Confidence            998876555555544    3346666654  33322 11111  123568889999999999999999999999999999


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ++..+..|.  ..|++++|+|+..++|.++.|+.|.+|++
T Consensus       285 pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  285 PLAVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             chhhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999886  46999999999999999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=6.1e-17  Score=170.23  Aligned_cols=270  Identities=14%  Similarity=0.193  Sum_probs=192.3

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ..+|.-|.+.|..++|.|-.. .|++++.||++.+|+++....-....           ..+...+.+|.++|-|+++++
T Consensus       287 k~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~-----------~epi~tfraH~gPVl~v~v~~  354 (577)
T KOG0642|consen  287 KFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKD-----------VEPILTFRAHEGPVLCVVVPS  354 (577)
T ss_pred             eeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccc-----------eeeeEEEecccCceEEEEecC
Confidence            358889999999999999987 79999999999999994321111101           111223789999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCC-------CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      +++.+.+|+.||+|+.|++....       .......+.||++.|+.+++|+...  .|++|+.||+++.|+...... .
T Consensus       355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~  431 (577)
T KOG0642|consen  355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-C  431 (577)
T ss_pred             CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-c
Confidence            99999999999999999664221       1112235779999999999999888  699999999999999766555 3


Q ss_pred             EEecCC--cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEecCCCEEEEEecC
Q 001358          480 SFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       480 ~~~~~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      +|....  +.-.++.+..+.- ...++...-+.-.+.++........+...       ...+..+...|.+...+++.. 
T Consensus       432 ~f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-  509 (577)
T KOG0642|consen  432 TFGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-  509 (577)
T ss_pred             ccCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence            332221  2223343321110 11222222222223333333333332211       124667788888888888875 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                         +..|+++|..++..+.....|.   ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus       510 ---d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  510 ---DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ---CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence               6679999999999999998888   89999999999999999999999999999877766555443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=1.4e-14  Score=160.05  Aligned_cols=198  Identities=12%  Similarity=0.142  Sum_probs=128.0

Q ss_pred             eEEEEecCCCEEEEEe--CCeEEEEEcCC-c---eeeEEecCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCCcee
Q 001358          806 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~  878 (1092)
                      ..++++|+++++++++  ++.|.+|++.+ +   +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence            4566777777776665  46677777753 2   1222222 223466788999 777775 455669999999986332


Q ss_pred             eE-------eeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358          879 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       879 ~~-------~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                      +.       ... .......++|+|||++++++.. +++|.+|+++.  ++......+...............+.|+|||
T Consensus       161 l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            21       111 1234678999999999988876 89999999984  3322222222211111111234568999999


Q ss_pred             CEEEEE--eCCcEEEEEcCCce----eeeeeccCCCcCEEEEEEecCCCEEEEEeC-CCcEEEEECC
Q 001358          949 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1008 (1092)
Q Consensus       949 ~~la~~--~d~~v~lwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~-Dg~i~vwd~~ 1008 (1092)
                      ++++++  .++.|.+|++....    .+.....  ......+.|+|||++|+++.. +++|.+|+++
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999986  45789999986432    2222111  124557899999999998775 8999999875

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=6.3e-16  Score=154.20  Aligned_cols=293  Identities=11%  Similarity=0.072  Sum_probs=208.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC---CccceEEec--ccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKT  466 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~l~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~  466 (1092)
                      +.+|.+.|.++.||.++++||+|+.|..+++|+++..-   ..+.+ .+.  .|...|.|++|....+  .+.+|+.+++
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~  128 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLENR--FLYSGERWGT  128 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCCe--eEecCCCcce
Confidence            67899999999999999999999999999999986321   11111 122  3557899999998887  8999999999


Q ss_pred             EEEEECCCCceeEEEec--CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecCC
Q 001358          467 IKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG  541 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg  541 (1092)
                      |...|+++.+.+..+..  ..+.|+.+..+|.  ...|++.+.+|.|.+||.+....   .............+.|+|-.
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999999999988752  2348999988776  35899999999999999986552   33344445578889999988


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeE-EE---EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          542 RRLFSCGTSKEGESFLVEWNESEGAI-KR---TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      ..|+.......   -+-+||.+.... +.   .+.+.......-.++.|+|+|+++++.-....-.+||+.+..+.....
T Consensus       207 P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~  283 (609)
T KOG4227|consen  207 PALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS  283 (609)
T ss_pred             ceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence            77666554333   378899875432 11   122222112234567899999999987766667788887754432222


Q ss_pred             CCCC-----CCCCceEEEccCCCEEEEEeCCCeEEEEECCCC-----------------------Ceeeeccccccccee
Q 001358          618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRK  669 (1092)
Q Consensus       618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-----------------------~~~~~~~~~~~~v~~  669 (1092)
                      .|..     ...+.+++|-.|- .+++|+++-.|++|.+...                       ..+..+++|..-+..
T Consensus       284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence            2211     2235677776554 4999999999999998732                       123345555555555


Q ss_pred             eeecCCcccccccccCCceeecCCCCCCcccceeeccccccceece
Q 001358          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~  715 (1092)
                      +.|+                      |...++++.+-++.+++|.-
T Consensus       363 VRF~----------------------~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  363 VRFS----------------------QHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             eeec----------------------CCcceEeccchhhheecccc
Confidence            5554                      56677888888899999973

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.6e-16  Score=153.54  Aligned_cols=277  Identities=15%  Similarity=0.181  Sum_probs=194.0

Q ss_pred             EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEEcc
Q 001358          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH  426 (1092)
Q Consensus       349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~  426 (1092)
                      .+|++-..|+|++||..+|+.+..                   +++|...++.++|..  ....+.+|+.||+|++||+.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            578888889999999999988875                   667888888999987  46788999999999999999


Q ss_pred             CCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEe----CCCcEEEEECCCCce-eEEE-ecCCcceEEEeecccCCc
Q 001358          427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI  499 (1092)
Q Consensus       427 ~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~  499 (1092)
                      +......+ ...+|. .+..+++..-.++  ++++|.    .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence            87655443 355666 4667777765666  566664    466799999998766 5444 679999999999987 45


Q ss_pred             cEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358          500 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      .+|++||.||.|.++|+.....   +...-.+...|..+.|..++ +.+.+.+.    .....+|+++.+.....+....
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~  254 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD  254 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence            7999999999999999876533   22233455679999999988 34555543    4458999998887655444321


Q ss_pred             cc---------CCceEEEEEcCCCCEEEE-EeCCCeEEEEECC---CCceE---EEEeCCCCCCCCceEEEccCCCEEEE
Q 001358          576 LQ---------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQLL---TTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       576 ~~---------~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~---~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ..         ...+.......++...+. |+.-+...++-+.   ++...   ..+.+ ++...|+++.|...+.++.+
T Consensus       255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T  333 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT  333 (376)
T ss_pred             chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence            00         011111111123344444 4435666665443   33332   33332 23455788999999999999


Q ss_pred             EeCCCeEEEEECCC
Q 001358          640 IANENRIKILETPE  653 (1092)
Q Consensus       640 ~~~dg~i~iw~~~~  653 (1092)
                      |+.||.+.+|..+.
T Consensus       334 GGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  334 GGEDGLLQAWKVED  347 (376)
T ss_pred             cCCCceEEEEecCC
Confidence            99999999999643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.2e-15  Score=140.19  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=193.3

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCC---CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      .|..-++||.++ +|+.|..+|+|.+..+.+-   +....            ...+.....+|.++|..++|.  ..+|+
T Consensus        12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~------------gk~~iv~eqahdgpiy~~~f~--d~~Ll   76 (325)
T KOG0649|consen   12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPP------------GKLKIVPEQAHDGPIYYLAFH--DDFLL   76 (325)
T ss_pred             HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCC------------CCcceeeccccCCCeeeeeee--hhhee
Confidence            667778999998 6899999999999988642   11110            001111246899999999998  55777


Q ss_pred             EEeCCCEEEEEEccCCCC---ccceEE--ecccc-----cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          413 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +|+ ||.|+=|.+.....   .+...+  ...|.     -.|+++...|...  -++.++.|+.++.||+++|+..++++
T Consensus        77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence            775 59999998864322   111101  11222     2588999998877  46666689999999999999999999


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC----------ceEEEEEecCCCEEEEEecCCC
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----------~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ||++.|.++.-..  ....+++|+.||++|+||.++.+....+..-..          .|  .+..-+..++++++.   
T Consensus       154 GHtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG---  226 (325)
T KOG0649|consen  154 GHTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG---  226 (325)
T ss_pred             CCcceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC---
Confidence            9999999987632  224689999999999999999988776543221          23  445566778988864   


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                        ..+.+|++++.+....+.-.    ..+..+.|..  ..++++++.+.|.-|.+. |.+....+...+  ...+..++.
T Consensus       227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~  295 (325)
T KOG0649|consen  227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQT  295 (325)
T ss_pred             --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccC
Confidence              34899999999998888764    4777888865  468888888889999874 444444443322  234444443


Q ss_pred             C-CCEEEEEeCCCeEEEE
Q 001358          633 N-GTLLAVIANENRIKIL  649 (1092)
Q Consensus       633 ~-~~~l~~~~~dg~i~iw  649 (1092)
                      . -+++-.++....+.|+
T Consensus       296 ~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  296 SPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CceEEEEecccceeeeee
Confidence            2 3345555555666554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=1.8e-15  Score=145.70  Aligned_cols=292  Identities=18%  Similarity=0.251  Sum_probs=206.4

Q ss_pred             eEecccCCCCceEEeec--CCCceEEEEEcC----cCcEEEEec--CCCCceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358          327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~s--pdg~~llasg~~----d~~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      +..+..+- .+.++.||  |+.+..||.|+.    .+.|.|-.+  ++++.+..-+                  ..|.-+
T Consensus        38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP   98 (364)
T KOG0290|consen   38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP   98 (364)
T ss_pred             EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence            45555555 78888998  677777999985    244555444  4455443322                  248899


Q ss_pred             EEEEEECCCCC-----EEEEEeCCCEEEEEEccCCC-CccceEE-----ecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358          399 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGS-DARQQLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       399 V~~l~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~-----l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      ++.+-|.||.+     +||+++ | .+++|.+...+ .+.....     -..+..++++..|+.-... ++.+++-|-+.
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC  175 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC  175 (364)
T ss_pred             ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence            99999999873     566653 3 49999997422 1111111     1246679999999876665 89999999999


Q ss_pred             EEEECCCCce---eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCC--CCceEEEEEecCC
Q 001358          468 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAP--GLGCTRMAYSANG  541 (1092)
Q Consensus       468 ~vwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~dg  541 (1092)
                      .|||+++|..   ...+-.|...|..++|.. +..+.+++.+.||.+|++|++..+.-. .++.+  ..+...++|++..
T Consensus       176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD  254 (364)
T KOG0290|consen  176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD  254 (364)
T ss_pred             EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence            9999999733   556778999999999975 345799999999999999999866433 33333  3477888888855


Q ss_pred             -CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceE---EE
Q 001358          542 -RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLL---TT  615 (1092)
Q Consensus       542 -~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~---~~  615 (1092)
                       +++++...+   ...|.+.|++. ...+..+++|.   ..|+.++|.|.. ..+.+++.|..+.+||+...-..   ..
T Consensus       255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence             566655542   44588999885 45678899988   999999999974 67888999999999999753220   00


Q ss_pred             EeCCCCCCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001358          616 IDAGGGLPENPRICFNK-NGTLLAVIANENRIKI  648 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i  648 (1092)
                      +-.-.....|+.+.|++ .+..++++.. +.+.+
T Consensus       329 ilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  329 ILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             hhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            10111234689999996 6778887765 34444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=2.5e-14  Score=143.06  Aligned_cols=242  Identities=11%  Similarity=0.145  Sum_probs=186.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ...+..+.|+.|...|..|+.|| -++|+.+......   ........|.-+-|+..  .+.+|+...-..+++.+.+.+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence            34677788999999999999999 7888887643211   11122335666667654  213344433345999999988


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---CCceEEEEEecCCCEEEEEecCCC
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ..+..+. ...+|.++.++.    ++|+++-.+. |.|||++..+...++...   ...+..+++++.+.+++.-+..  
T Consensus        79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--  150 (391)
T KOG2110|consen   79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--  150 (391)
T ss_pred             ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC--
Confidence            8887775 566788888743    4666665554 999999998887766543   3356666666777788876542  


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      ..+.|++||..+-+.+..+..|.   +.+.+++|+++|..++++|+.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence            25669999999999999999888   99999999999999999999987 699999999999999866555678899999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCC
Q 001358          632 KNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |++++|++.++.++|.+|.+...
T Consensus       228 ~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCCCeEEEecCCCeEEEEEeccc
Confidence            99999999999999999998854

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=2.1e-14  Score=158.65  Aligned_cols=275  Identities=14%  Similarity=0.194  Sum_probs=178.1

Q ss_pred             eEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEc
Q 001358          348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY  425 (1092)
Q Consensus       348 ~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~  425 (1092)
                      +++++...++.|.+||+.+ |+......                 + .+.+.+..++++||+++|++++ .++.|.+|++
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            3555667789999999975 33221111                 1 1345677899999999997764 4778999999


Q ss_pred             cCCCCccceEEecccccceeEEEeeCCCCcEEEEEE-eCCCcEEEEECCC-Cc---eeEEEecCCcceEEEeecccCCcc
Q 001358          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH  500 (1092)
Q Consensus       426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~-~~d~~i~vwd~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~~  500 (1092)
                      .....+...... ...+....++|+|+++.  ++++ ..++.|.+|++++ +.   .+..+.+ ......++++  ++++
T Consensus        65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~--l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--p~g~  138 (330)
T PRK11028         65 ADDGALTFAAES-PLPGSPTHISTDHQGRF--LFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANID--PDNR  138 (330)
T ss_pred             CCCCceEEeeee-cCCCCceEEEECCCCCE--EEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeC--CCCC
Confidence            732222211122 12335678999999994  4444 4588999999874 32   2333332 2334556664  4666


Q ss_pred             EEE-EEecCCeEEEEEcCCCCceEE-----e-cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC--Ce--EEE
Q 001358          501 FIF-SISVDGKIKAWLYDSLGARVD-----Y-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR  569 (1092)
Q Consensus       501 ~l~-s~~~dg~i~vwd~~~~~~~~~-----~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~  569 (1092)
                      +++ +...++.|.+||+++......     . ...+.....++|+|||++++++..   .++.|.+|++..  ++  .+.
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence            664 555679999999986432211     1 112345678999999999988753   366799999873  33  233


Q ss_pred             EEeeccc---cCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358          570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      .+.....   +......+.++|++++++++. .++.|.+|++....    .+......   .....++++|+|++|+++.
T Consensus       216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence            3332210   111234688999999999975 47899999986433    22222221   2356899999999999887


Q ss_pred             C-CCeEEEEECC
Q 001358          642 N-ENRIKILETP  652 (1092)
Q Consensus       642 ~-dg~i~iw~~~  652 (1092)
                      . +++|.+|++.
T Consensus       293 ~~~~~v~v~~~~  304 (330)
T PRK11028        293 QKSHHISVYEID  304 (330)
T ss_pred             ccCCcEEEEEEc
Confidence            6 8999999875

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.71  E-value=3.1e-17  Score=178.88  Aligned_cols=288  Identities=15%  Similarity=0.234  Sum_probs=225.1

Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                      +.++.+.+|.   +.|+|+.|...|.++++|+.|..++||..+++.++....+|.+  .++.++.+.+..++++++.|..
T Consensus       181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence            3345566777   8999999999999999999999999999999999999887754  6999999999999999999999


Q ss_pred             EEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec-cCccce
Q 001358          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA-RPSECQ  724 (1092)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~-~~~~~~  724 (1092)
                      |++|.+.++.++..+++|.+.|++++|+|..                          +.+.||++++||.... ......
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--------------------------sss~dgt~~~wd~r~~~~~y~pr  309 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--------------------------SSSDDGTCRIWDARLEPRIYVPR  309 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc--------------------------cCCCCCceEeccccccccccCCC
Confidence            9999999999999999999999999999742                          5567899999996611 000000


Q ss_pred             ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001358          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  804 (1092)
                      ..   .......+..+.|...+..+++++.++.-..|.++.-               .|                 +...
T Consensus       310 p~---~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~  354 (1113)
T KOG0644|consen  310 PL---KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNL  354 (1113)
T ss_pred             CC---CcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccc
Confidence            11   1123355677888888999999999988887765431               11                 1122


Q ss_pred             eeEEEEecCC-CEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358          805 VPCFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       805 v~~~~~s~dg-~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      +.-+.++.|- .+.+++ .+-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+-.|.+++..
T Consensus       355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence            2222222222 333444 36779999999999999999999999999999988888889999999999999998776655


Q ss_pred             ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       883 ~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      ..-.+.+..-+||+||..++....-|.+.|.....++
T Consensus       435 ~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  435 FIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            4334556777999999999988888999998765543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=2e-15  Score=145.21  Aligned_cols=184  Identities=17%  Similarity=0.240  Sum_probs=130.9

Q ss_pred             CCeeEEEEec--CCCEEEEEeCCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ee
Q 001358          803 EAVPCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV  878 (1092)
Q Consensus       803 ~~v~~~~~s~--dg~~l~~~sdg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~  878 (1092)
                      ...++-+|+|  ||..+++.+|++++.||+.+.++...+. +|...+..+.|.|+...+|++++.||.|+|||.+.. .+
T Consensus       171 ~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  171 HSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             ceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence            3445556776  8899999999999999999887766654 577889999999977789999999999999999864 57


Q ss_pred             eEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC
Q 001358          879 ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE  956 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d  956 (1092)
                      +..+.+|+.-|+++.|.|. .+++.|+|.|..|.+|...+-....                  .+.|-.|..-.-. ...
T Consensus       251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dse  312 (370)
T KOG1007|consen  251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSE  312 (370)
T ss_pred             ccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhH
Confidence            8999999999999999995 4778899999999999876522111                  1111111100000 000


Q ss_pred             CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEeCCCcEEEEECC
Q 001358          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      .+++  -+..|. +. .+..|...|.+++||.-.- .+|+-+.||++.|=.+.
T Consensus       313 er~k--pL~dg~-l~-tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  313 ERVK--PLQDGQ-LE-TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             Hhcc--cccccc-cc-cccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            1111  111121 11 2557899999999987554 56678899998876554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=2.2e-16  Score=149.91  Aligned_cols=287  Identities=16%  Similarity=0.130  Sum_probs=199.1

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+...+.   .++ .|...|+.+.-.|++.   +.+-+.|+.+.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~l   81 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLIL   81 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEE
Confidence            3778999999999988776 8899999999999999976554   455 4677899999999865   899999999999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccC---C----ccEEEEEecCCe-EEEEEcCCCCceEEec----CCCCceEEEEE
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKE---N----IHFIFSISVDGK-IKAWLYDSLGARVDYD----APGLGCTRMAY  537 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~---~----~~~l~s~~~dg~-i~vwd~~~~~~~~~~~----~~~~~i~~~~~  537 (1092)
                      |++.-+..+.   .|+-.++++.|.+..   +    .+.++.-+.... +++-|......+....    ...+.+++..+
T Consensus        82 w~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~  158 (323)
T KOG0322|consen   82 WTIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK  158 (323)
T ss_pred             EEccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence            9988765443   244445555443211   0    011111111100 1122222111222111    12234544442


Q ss_pred             e-cCCCE-EEEEecCCCCceeEEEEeCCCCeEEE----------EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358          538 S-ANGRR-LFSCGTSKEGESFLVEWNESEGAIKR----------TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       538 s-~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw  605 (1092)
                      . .++.+ ++.++   .+.+.+.+||+.++..+-          ....|.   ++|.++.+.+.-..=++|+.+..+..|
T Consensus       159 ~~~c~s~~lllaG---yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  159 DHACGSTFLLLAG---YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             cccccceEEEEEe---ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceee
Confidence            2 24444 33333   236779999999984432          233444   899999999877777888888899999


Q ss_pred             ECCC--CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccc
Q 001358          606 DMNK--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       606 d~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      +++.  +.+.......-..+.+..+..-||++.+|+++.|+.||+|+.++.+++..++-|...+.+++|+          
T Consensus       233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs----------  302 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS----------  302 (323)
T ss_pred             eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC----------
Confidence            8764  3332222111223568899999999999999999999999999999999999999999999997          


Q ss_pred             cCCceeecCCCCCCcccceeeccccccceece
Q 001358          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~  715 (1092)
                                  ||...++.++.|+.|.+|++
T Consensus       303 ------------pd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  303 ------------PDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ------------CCCchhhhccCCceEEeeec
Confidence                        66778899999999999985

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=1.1e-14  Score=145.55  Aligned_cols=241  Identities=11%  Similarity=0.176  Sum_probs=183.4

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceee
Q 001358          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI  879 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~  879 (1092)
                      ...+..+.|..+...|..|+....++|..+..............|..+-|+.   .++|..+.+.  .+++++++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            3456677788888999999877788888876554333333444677777875   3666665543  5999999988877


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E--eC
Q 001358          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE  956 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~--~d  956 (1092)
                      ..+. ...+|.++.+.  .++|+++=.+. |+|||+++     .+.+.+.....+....+.++++++.+.+||. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~-----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKD-----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccc-----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7766 55678888885  45666665554 99999998     4456655544332235677777777889998 3  55


Q ss_pred             CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEeeccccccCCCCccCcccceE
Q 001358          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus       957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
                      |.|.|||+.+.+.+.. ...|.+.+.+++|++||.+|||+|..|+ |||+.+.+|..+..|+...+        ++...+
T Consensus       153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS  223 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS  223 (391)
T ss_pred             ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence            8899999999988887 5589999999999999999999999998 89999999999999983332        233457


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358         1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      ++|+| |+.+|++.+..++|++|.+....
T Consensus       224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  224 LSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            89999 58999999999999999996543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=3.5e-16  Score=159.43  Aligned_cols=199  Identities=17%  Similarity=0.196  Sum_probs=164.6

Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc
Q 001358          806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      .+++|+.+|..++++. ||++|||+..+...+.....|..+|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999997 89999999988888888889999999999999 99999999999 899999999977776653


Q ss_pred             --ccCCeEEEEEcCCC-----CEEEEEeCCCcEEEEEcCCCceeee-eeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee
Q 001358          885 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH  955 (1092)
Q Consensus       885 --h~~~V~~l~~spdg-----~~l~s~s~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~  955 (1092)
                        -......+.|+.|+     ..++....-+.|+.|++........ +..+....+.    .|++++.|+||+++|. +.
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence              23346678898887     4444555667788888776443211 1112222222    5999999999999999 58


Q ss_pred             CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       956 d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      ||.|.|++..+.+++......|...|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            9999999999999999888899999999999999999999999999999887763

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=7.5e-15  Score=164.75  Aligned_cols=303  Identities=17%  Similarity=0.205  Sum_probs=208.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-CCCCCceEEEcc--CCCEEEEEeCCCeEEEEECCCCC
Q 001358          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNK--NGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      .+...+.|+|-...++++.+.-.|+|||.+.++.+..+..+. ....|..+.+-.  |..++.+++.||.|+||+--...
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            345677889988999999988999999999999988876442 223467777654  56678888888888888643210


Q ss_pred             eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccc
Q 001358          656 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  735 (1092)
Q Consensus       656 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  735 (1092)
                      .                                        +...++++                               
T Consensus      1145 ~----------------------------------------~~~eLVTa------------------------------- 1153 (1387)
T KOG1517|consen 1145 W----------------------------------------KKPELVTA------------------------------- 1153 (1387)
T ss_pred             c----------------------------------------CCceeEEe-------------------------------
Confidence            0                                        00001111                               


Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                            |++-...+.+....|                                                 .-+.|-....
T Consensus      1154 ------w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1154 ------WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSG 1178 (1387)
T ss_pred             ------eccccccCccCCCCC-------------------------------------------------eeeehhhhCC
Confidence                  110000000011111                                                 1123333333


Q ss_pred             EEEEEe-CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeeEeeccccCC--
Q 001358          816 YLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR--  888 (1092)
Q Consensus       816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~--  888 (1092)
                      +|++++ -..|+|||.........+.. ....++++.-+...|+++++|..||.|++||.+..   ..+...+.|+..  
T Consensus      1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred             eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence            444444 47899999988777776653 34567888776656799999999999999998764   356777889987  


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001358          889 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1092)
Q Consensus       889 V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~  967 (1092)
                      |..+.+-+.|- .|++|+.||.|++||+..........+   ..+...++..+++..+++...+|+|+.+.|+||++.. 
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G- 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG- 1334 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecCh-
Confidence            99999988764 499999999999999987432221111   1222222358999999999999998779999999863 


Q ss_pred             eeeeee------ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358          968 TCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       968 ~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                      +.+..+      .....+.+.|++|.|---+||+|+.|.+|.||....+.
T Consensus      1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            333221      11236778999999999999999999999999887654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=2.6e-14  Score=137.89  Aligned_cols=242  Identities=13%  Similarity=0.141  Sum_probs=174.5

Q ss_pred             CCCCCeeEEEEecCCC----EEEEEeCCeEEEEEcCCce--e--eEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358          800 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMTFK--T--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~----~l~~~sdg~i~iwd~~~~~--~--~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                      .|..+++.+.|.|+.+    -++..++..+|+|.+...+  .  ...+     ..+..++++..|..-+.+++.+.+-|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            4899999999999874    2333456789999987422  1  1111     235568999999987889999999999


Q ss_pred             eEEEEEcCCce---eeEeeccccCCeEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001358          867 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  942 (1092)
Q Consensus       867 ~v~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  942 (1092)
                      +..|||++++.   +..++-+|..+|..++|+.++ +.+||+|.||.||++|+..-+-.  ..+......   ..+...+
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~---~~pLlRL  248 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSP---STPLLRL  248 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCC---CCcceee
Confidence            99999999863   467888999999999999865 67999999999999999874422  233322221   1357888


Q ss_pred             EEecCC-CEEEE-EeC-CcEEEEEcCCceeeeeeccCCCcCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          943 QFHKDQ-TRFLL-VHE-THLAIYEAEELTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       943 ~~s~dg-~~la~-~~d-~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      +|++.. +++|+ +.| ..|.|.|++.....-.-+.+|.+.|..++|.|. +..|.|++.|..+.+||+..--......+
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence            998754 66777 444 579999998665444447789999999999995 46899999999999999987533111111


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeC
Q 001358         1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051 (1092)
Q Consensus      1019 ~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~ 1051 (1092)
                      .....   .++.|.  .+.|+|..++.++.+..
T Consensus       329 ilay~---a~~EVN--qi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  329 ILAYT---AGGEVN--QIQWSSSQPDWIAICFG  356 (364)
T ss_pred             hhhhh---ccceee--eeeecccCCCEEEEEec
Confidence            11111   234566  45666655677776653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=8.3e-15  Score=166.61  Aligned_cols=235  Identities=12%  Similarity=0.112  Sum_probs=162.6

Q ss_pred             cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCcc
Q 001358          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR  432 (1092)
Q Consensus       356 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~  432 (1092)
                      +..|.|||........                    +..|...+.+.+|||||++||.++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            4689999987654321                    56688899999999999999988643   479999998875322


Q ss_pred             ceEEecccccceeEEEeeCCCCcEEEEE-EeCCCcEEEE--ECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cC
Q 001358          433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD  508 (1092)
Q Consensus       433 ~~~~l~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~d  508 (1092)
                       ...+.+|   ...++|+|||+  .|+. .+.+|.+.||  |+.+++ +..+..+...+....|+  +||+.|+..+ .+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence             2223333   44789999999  4554 4567766555  666665 45566677777778885  4667666544 67


Q ss_pred             CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      |...+|+++..........+..  ....|+|||++++..+.     ..+.+||+.+++........     ....+.|+|
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP  381 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISP  381 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence            8889998765433222222222  45789999999988764     23777999988765433222     234578999


Q ss_pred             CCCEEEEEeCCCeEEEEEC--CCCceEEEEeCCCCCCCCceEEEccC
Q 001358          589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       589 ~~~~l~~~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ++++++.++.++...+|.+  .+|.....+..+.  ..+...+|+|-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence            9999999999998888875  3577777776543  34778889874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=5.1e-14  Score=160.99  Aligned_cols=256  Identities=13%  Similarity=0.109  Sum_probs=182.0

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC----CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  466 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  466 (1092)
                      +..|...|..++.+++ +.++++||.||+|++||...-    ...+...++..-..++.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            6678999999998875 499999999999999998632    22233333433466899999999999  6888899999


Q ss_pred             EEEEECCC--Cce-----eEEEec-CCcceEEEe-ecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEE
Q 001358          467 IKVWDAVT--GSR-----TYSFEG-HGAPVYSLC-PHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRM  535 (1092)
Q Consensus       467 i~vwd~~~--~~~-----~~~~~~-~~~~v~~i~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~  535 (1092)
                      |++.+++.  .+.     .+.... ..+.+.+|. +........++.+..-+.|..||.+........  ....+-|+++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            99999876  221     111111 223444443 332222237888999999999999887665543  4455689999


Q ss_pred             EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC---CCEEEEEe--CCCeEEEEECCCC
Q 001358          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV  610 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s--~dg~i~iwd~~~~  610 (1092)
                      +.+|-+.+++.|..    .|.+.+||++=+..+.......  ..++..+..+|-   +...++++  ..+.|.+|++.+|
T Consensus      1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            99999999999976    6679999999988887776544  366777766654   34555543  5788999999999


Q ss_pred             ceEEEEeCCCCC-----------------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358          611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ....++......                 ......++...+..+.+|+.|..|+.||.....
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            877776543110                 011223444456788999999999999988653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=2.6e-13  Score=148.43  Aligned_cols=318  Identities=11%  Similarity=0.134  Sum_probs=201.5

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ++.|.+.|..+.+.+..+....   ..-..+.|+||++++++++.||.|.++|+.+++.+.++.....   ...+++++|
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~s~D   88 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAVSPD   88 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE--T
T ss_pred             CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEEcCC
Confidence            6679999999999999998644   3345578999999999999999999999999999999976533   578999999


Q ss_pred             CCEEEEEe-CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          634 GTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       634 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                      |++++++. ..+.+.++|..+.+.+..+.......                                             
T Consensus        89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~---------------------------------------------  123 (369)
T PF02239_consen   89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV---------------------------------------------  123 (369)
T ss_dssp             TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T---------------------------------------------
T ss_pred             CCEEEEEecCCCceeEeccccccceeecccccccc---------------------------------------------
Confidence            99998775 58999999999887776554211100                                             


Q ss_pred             eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeEEeeecCCccccCcccccccCCccccCCCCCce
Q 001358          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1092)
                                        .....++.++..++....++..-.+ +.+.+-|+....                      .+
T Consensus       124 ------------------~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~----------------------~~  163 (369)
T PF02239_consen  124 ------------------DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK----------------------NL  163 (369)
T ss_dssp             ------------------TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS----------------------CE
T ss_pred             ------------------cccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc----------------------cc
Confidence                              0023456777778888766655554 666555543211                      01


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCC---------CC
Q 001358          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPH---------DN  856 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~---------d~  856 (1092)
                      ....+   ..........|+|++++++++.  .+.|.++|.++++.+..+.    .|..+...+ .+|.         .+
T Consensus       164 ~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~  239 (369)
T PF02239_consen  164 KVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG  239 (369)
T ss_dssp             EEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred             ceeee---cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence            11111   1234556789999999988875  5789999999998876653    233333332 1221         22


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE----eCCCcEEEEEcCCCceeeeeeeecCCCC
Q 001358          857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS----GGDAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~----s~Dg~i~iwd~~~~~~~~~~~~~~~~~~  932 (1092)
                      ...++.-....+.+||..+.+.+.++....++ .-+.-+||++++...    ...++|.++|.++.+...  .+....+ 
T Consensus       240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-  315 (369)
T PF02239_consen  240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-  315 (369)
T ss_dssp             SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-
T ss_pred             ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-
Confidence            23322233345667898999999999977666 778889999999987    455889999999853211  1111111 


Q ss_pred             cCCCCCceEEEEecCCCEEEEE---eCCcEEEEEcCCceeeeeec
Q 001358          933 MTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       933 ~~~~~~v~~l~~s~dg~~la~~---~d~~v~lwd~~~~~~~~~~~  974 (1092)
                          ..+..+.|++||+.+-++   .++.|.+||..+.+.+..+.
T Consensus       316 ----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  316 ----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             ------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             ----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence                137899999999987763   34489999999999888743

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=1.1e-12  Score=143.66  Aligned_cols=332  Identities=15%  Similarity=0.164  Sum_probs=207.8

Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001358          455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  534 (1092)
                      .+++++-..++.|.|.|..+.+.+.++......-..+.+  ++|++++++++.||.|.++|+.+.+....+.... ...+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            346677788999999999999999999865544344555  6688899999999999999999999877776544 5678


Q ss_pred             EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc----cCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 001358          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK  609 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~  609 (1092)
                      +++|+||++++++...   .+.+.++|..+.+.++.+.....    ....+.++..+|....++..- +.+.|.+-|...
T Consensus        83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            9999999999987642   56799999999999988765431    124577888888888565554 558888889877


Q ss_pred             CceEE--EEeCCCCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCC
Q 001358          610 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       610 ~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      .+.+.  .+...   .......|+|++++++++ ..+..|.++|..+++....+....                      
T Consensus       160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~----------------------  214 (369)
T PF02239_consen  160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK----------------------  214 (369)
T ss_dssp             SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS----------------------
T ss_pred             ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc----------------------
Confidence            65443  33322   235689999999988775 446788899988764443222100                      


Q ss_pred             ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCC
Q 001358          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                                                                  ..|......+ ..|..-           .+|.    
T Consensus       215 --------------------------------------------~p~~~~~~~~-php~~g-----------~vw~----  234 (369)
T PF02239_consen  215 --------------------------------------------KPHPGPGANF-PHPGFG-----------PVWA----  234 (369)
T ss_dssp             --------------------------------------------SBEETTEEEE-EETTTE-----------EEEE----
T ss_pred             --------------------------------------------cccccccccc-cCCCcc-----------eEEe----
Confidence                                                        0011112111 111110           0111    


Q ss_pred             ccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEeCCeEEEEEcCCceeeEEecCCCCC
Q 001358          767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SASGGVISLYIVMTFKTILTIMPPSPT  845 (1092)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~sdg~i~iwd~~~~~~~~~~~~~~~~  845 (1092)
                                                                 .+..+...+ ..+.+.+.+||..+++.++++......
T Consensus       235 -------------------------------------------~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g  271 (369)
T PF02239_consen  235 -------------------------------------------TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG  271 (369)
T ss_dssp             -------------------------------------------EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS
T ss_pred             -------------------------------------------eccccceecccccCCccccchhhcCeEEEEEECCCCc
Confidence                                                       111122221 122345567888889999988876666


Q ss_pred             eEEEEEcCCCCCEEEEE----eCCCeEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEEEEEeCC--CcEEEEEcCCC
Q 001358          846 ATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD--AQIFVWDVDGW  918 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~D--g~i~iwd~~~~  918 (1092)
                       .-+..+| +++++.+.    ...++|.++|.++.+.+..+.... ..+..+.|++||+.+..+..+  +.|.|||..+.
T Consensus       272 -lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  272 -LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             ---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred             -ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence             7788899 88899887    455799999999998888876332 358999999999977655443  36999999997


Q ss_pred             ceee
Q 001358          919 GIQT  922 (1092)
Q Consensus       919 ~~~~  922 (1092)
                      +...
T Consensus       350 ~~~~  353 (369)
T PF02239_consen  350 KEKK  353 (369)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6544

...

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=3.2e-15  Score=152.50  Aligned_cols=197  Identities=21%  Similarity=0.202  Sum_probs=151.0

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeee
Q 001358          847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL  926 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  926 (1092)
                      .+++|+. ++..|++|+.||++|||+..+...+.....|.+.|.++.|||||+.|++.+.| ..+||++.++-...   .
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~  222 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---R  222 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---h
Confidence            7899999 89999999999999999999888888888899999999999999999999999 79999999973221   1


Q ss_pred             ecCCCCcCCCCCceEEEEecCC---CE-EEEE--eCCcEEEEEcCCcee-----eeeeccCCCcCEEEEEEecCCCEEEE
Q 001358          927 QTPDGVMTLAPSETHIQFHKDQ---TR-FLLV--HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT  995 (1092)
Q Consensus       927 ~~~~~~~~~~~~v~~l~~s~dg---~~-la~~--~d~~v~lwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t  995 (1092)
                      .++.+..   -....+.|+.|+   .+ +++.  .-+.|..|++.....     .++ .......|++++.|+||++++.
T Consensus       223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCCcEEEE
Confidence            1111111   247789999988   33 3332  345677766643222     111 1112458999999999999999


Q ss_pred             EeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358          996 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus       996 ~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      |+.||.|.|++..+.+...-+.       ..|..-|  ..+.|+| |.+.+++.+.|.+..+..+.-
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~V--T~ltF~P-dsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFV--TGLTFSP-DSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeeh-------hhheeee--eeEEEcC-CcCcccccccCCceeEEEEee
Confidence            9999999999999887763332       2345544  4789999 578999999999999998865

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.64  E-value=4e-14  Score=158.30  Aligned_cols=250  Identities=17%  Similarity=0.168  Sum_probs=181.8

Q ss_pred             CCCcEEEEEECC-CCCEEEEEeCCCEEEEEEccCCCCc--cc-eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       395 h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      -...|.|++|+| +..++|.|..+|.|.+||+..+...  .. ......|..+++.+.|..+-...-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            467999999999 6778888899999999999977651  11 1123468899999999775442249999999999999


Q ss_pred             ECCCCce------eEEEe------cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--------eEEecCCCC
Q 001358          471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL  530 (1092)
Q Consensus       471 d~~~~~~------~~~~~------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------~~~~~~~~~  530 (1092)
                      +++.-..      .....      .-...++++.|.+. +-..++.|+.+|.|.--.....+.        ...+..|.+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            8764322      11111      12345778888765 446799999999988733322221        225566788


Q ss_pred             ceEEEEEecCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECC
Q 001358          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN  608 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~  608 (1092)
                      +|+++.++|-+..++..+.    +-++++|... ....+..+..+.   ..+.+++|+|....+ +++..||.+.+||+.
T Consensus       400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            9999999998876665543    6679999987 555555665555   669999999987554 557789999999997


Q ss_pred             CCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          609 KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       609 ~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ....  +......  ....+.+.|+++|+.+++|...|.+.+|++...
T Consensus       473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            5443  3333322  345678888999999999999999999999743

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=4.2e-14  Score=158.85  Aligned_cols=297  Identities=14%  Similarity=0.183  Sum_probs=207.7

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGS  409 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~  409 (1092)
                      +....-..+.|+|-.. .++++...-.|+|||.+.++.+..+.-                -......|+.+.+-.  |..
T Consensus      1062 ~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~a 1124 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDDA 1124 (1387)
T ss_pred             cCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccchh
Confidence            4444567888999887 577777667899999999988754221                112345788888876  677


Q ss_pred             EEEEEeCCCEEEEEEcc-CC-CCccc---eEEeccc----ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          410 LLGVAYSKHIVQLYAYH-GG-SDARQ---QLEIDAH----VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~-~~-~~~~~---~~~l~~h----~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      ++++|+.||.|+||+-- .+ +..+.   ...+.++    .+.=.-+.|-....  .|+++|.-..|+|||.....+++.
T Consensus      1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred             heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEee
Confidence            99999999999999743 22 11111   1112221    11113356776666  566666688999999999888877


Q ss_pred             Eec-CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCc--eEEEEEecCCCE-EEEEecCCCC
Q 001358          481 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKEG  553 (1092)
Q Consensus       481 ~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~dg~~-l~~~~~~~~~  553 (1092)
                      +.. ....|+++.-... .|..+++|..||.|++||.+....   +..+..|...  |..+.+-+.|-. |++++.    
T Consensus      1203 iP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---- 1277 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---- 1277 (1387)
T ss_pred             cccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----
Confidence            643 4456777765433 368999999999999999876443   4455666665  999999987765 888876    


Q ss_pred             ceeEEEEeCCCCeEEEEEe--eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCCc
Q 001358          554 ESFLVEWNESEGAIKRTYQ--GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENP  626 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~  626 (1092)
                      +|.|++||++.......+.  .|..-.+..+++..++....+++|+. +.|.||++.. +.+..+..+     .....+.
T Consensus      1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~s 1355 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVS 1355 (1387)
T ss_pred             CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcc
Confidence            5559999998753222221  11111134899999999999999998 9999999864 333333221     1234578


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          627 RICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +++|+|..-++|+|+.|..|.||.....
T Consensus      1356 cL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1356 CLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeeecchhHhhhhccCCceEEEeecCCc
Confidence            9999999999999999999999987654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=2.5e-15  Score=155.06  Aligned_cols=312  Identities=16%  Similarity=0.236  Sum_probs=222.9

Q ss_pred             EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEEeecccCCccEEEEEecCCeEEEE
Q 001358          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW  514 (1092)
Q Consensus       436 ~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vw  514 (1092)
                      .|..|.+.|..+.|+..|.  .+++|+.|..|.+||+.+++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus       137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            5789999999999999999  8999999999999999999887776 578888888889998888999999999999988


Q ss_pred             EcCCCCce---EEecCCCCceEEEEEecCCCE-EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEEEEc
Q 001358          515 LYDSLGAR---VDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFD  587 (1092)
Q Consensus       515 d~~~~~~~---~~~~~~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~  587 (1092)
                      .+...+..   ..+..|.++|..++.-|+..+ +.+++.    ++.+.-+|++.+.....+........   ....++..
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge----D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE----DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCccccccc----ccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            76554432   355668889999999998765 556654    67788899988876655554332233   56788888


Q ss_pred             CCCC-EEEEEeCCCeEEEEECCCCceE------EEEeCC----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358          588 TAKD-QILAAGDDHVIKIWDMNKVQLL------TTIDAG----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       588 ~~~~-~l~~~s~dg~i~iwd~~~~~~~------~~~~~~----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      |... .+++++.|..+++||.+.-...      ..+..+    .....|++++|+.++.-+.+...|-.|+++.-.-+. 
T Consensus       291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~-  369 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD-  369 (559)
T ss_pred             CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc-
Confidence            8775 7788999999999997642211      111110    222357777777666666666666667776322110 


Q ss_pred             eeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccccc
Q 001358          657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  736 (1092)
Q Consensus       657 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  736 (1092)
                                                               |....+.                                
T Consensus       370 -----------------------------------------G~~p~~~--------------------------------  376 (559)
T KOG1334|consen  370 -----------------------------------------GSEPDPS--------------------------------  376 (559)
T ss_pred             -----------------------------------------CCCCCCC--------------------------------
Confidence                                                     0000000                                


Q ss_pred             EEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE-EecCCC
Q 001358          737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-LSKNDA  815 (1092)
Q Consensus       737 i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~s~dg~  815 (1092)
                            +|...                                           .....+.++.....|..+- |-|...
T Consensus       377 ------s~~~~-------------------------------------------~~k~vYKGHrN~~TVKgVNFfGPrsE  407 (559)
T KOG1334|consen  377 ------SPREQ-------------------------------------------YVKRVYKGHRNSRTVKGVNFFGPRSE  407 (559)
T ss_pred             ------cchhh-------------------------------------------ccchhhcccccccccceeeeccCccc
Confidence                  00000                                           0000011111122344444 457889


Q ss_pred             EEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358          816 YLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       816 ~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      |+++|+| |.|.||+-.+++.++-+.+...-|.|+.-+| --.+||+.+-|..|+||...+.+
T Consensus       408 yVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  408 YVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             eEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCccc
Confidence            9999999 9999999999999999888777899999999 67799999999999999875443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=2.3e-14  Score=162.97  Aligned_cols=232  Identities=18%  Similarity=0.195  Sum_probs=152.5

Q ss_pred             ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCc---CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC
Q 001358          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP  395 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h  395 (1092)
                      +.+......+.+..|...+..++|||||++ ||..+.+   ..|.+||+.+++......                 +.+|
T Consensus       188 i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~  249 (429)
T PRK01742        188 VADYDGFNQFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH  249 (429)
T ss_pred             EECCCCCCceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc
Confidence            344444456778888889999999999996 5554432   469999999886432111                 2233


Q ss_pred             CCcEEEEEECCCCCEEEEEe-CCCEEEEE--EccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358          396 GVSVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                         ..+++|||||++|++++ .+|.+.||  |+.++.. .   .+..+...+...+|+|||+. +++++..++...||++
T Consensus       250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRM  321 (429)
T ss_pred             ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEE
Confidence               34689999999998875 57765555  6666542 2   45567777889999999995 3334456788888876


Q ss_pred             CCC-ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          473 VTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       473 ~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ... .....+ .+..  ....|  ++||+.|+..+.++ +.+||+.++........  .....+.|+|||++++.++.++
T Consensus       322 ~~~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g  393 (429)
T PRK01742        322 SASGGGASLV-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQG  393 (429)
T ss_pred             ECCCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCC
Confidence            532 222333 3433  33455  56778888887765 45589887765433222  2335678999999999987632


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1092)
                      . ...+++++ .+|..++.+..+.   +.+...+|+|-
T Consensus       394 ~-~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~  426 (429)
T PRK01742        394 L-GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY  426 (429)
T ss_pred             C-ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence            2 22233444 3577777887766   67788889874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.9e-13  Score=133.16  Aligned_cols=288  Identities=16%  Similarity=0.167  Sum_probs=190.7

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEEEEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~  414 (1092)
                      .+..++|++.-. -+|++..|-.|+|||-.....-.-                   -......|+|++|-| .++-|++|
T Consensus       100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~L-------------------ks~sQrnvtclawRPlsaselavg  159 (445)
T KOG2139|consen  100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTKL-------------------KSVSQRNVTCLAWRPLSASELAVG  159 (445)
T ss_pred             ceeeEeechhhh-hhhhhccCcEEEEeccCCCCCcee-------------------cchhhcceeEEEeccCCcceeeee
Confidence            677888988544 478888999999999776322110                   122456899999999 46788888


Q ss_pred             eCCCEEEEEEccCCCCc-----------cceEEecccccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECCCCceeEEEe
Q 001358          415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~-----------~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +..| |.||....-...           .+...-.+| .+|+++.|.+||.  .+++++. |..|.|||.++|..+....
T Consensus       160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence            8887 999987532111           112223455 5899999999999  6787774 5689999999998776554


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe-
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN-  561 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd-  561 (1092)
                      ...+.+.-+.|+  +|+.+|+++.-|+..++|+....-.........+.|...+|+|+|++|+.....   ...++-.. 
T Consensus       236 ~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f  310 (445)
T KOG2139|consen  236 KGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF  310 (445)
T ss_pred             cCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence            455677788885  577899999999999999654433333334444589999999999987765531   22232211 


Q ss_pred             -CCCCeE-----------E------EEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCceEEE
Q 001358          562 -ESEGAI-----------K------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------VIKIWDMNKVQLLTT  615 (1092)
Q Consensus       562 -~~~~~~-----------~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------~i~iwd~~~~~~~~~  615 (1092)
                       -+.+..           +      ....+...-.+.+.+++|.|.|.++++.-..+        .|.+||...--.+..
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence             111110           0      11112112246789999999999999865433        366788765444433


Q ss_pred             EeC-CCCCCCCceEEEcc---CCCEEEEEeCCCeEEEEECC
Q 001358          616 IDA-GGGLPENPRICFNK---NGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       616 ~~~-~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ... .........++|+|   ++.+|.++-..|.+.-|.+.
T Consensus       391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            311 11112245677776   67888888888888777654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.61  E-value=6.7e-14  Score=146.27  Aligned_cols=169  Identities=11%  Similarity=0.150  Sum_probs=126.2

Q ss_pred             ecCCCEEEEEe-CCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001358          811 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------  875 (1092)
Q Consensus       811 s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------  875 (1092)
                      .+.+--+.++- -|.+.+.|....+..+.+.    -....++|+.|-|.+...++++-.+|.+++||..-          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            45565666665 4888888865522211111    12368999999997777888889999999997531          


Q ss_pred             ----c--------------eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001358          876 ----S--------------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1092)
Q Consensus       876 ----~--------------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1092)
                          +              .++..+.--.+.|...+|||||++||+.|.||.+||+|+.+.+     ++.......   +
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G  333 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G  333 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence                1              1122222234578889999999999999999999999999843     333333333   3


Q ss_pred             CceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec
Q 001358          938 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1092)
Q Consensus       938 ~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1092)
                      ...+++|||||++|++ |.|.-|.||.....+.+.. -.+|...|+.++|.|
T Consensus       334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence            7899999999999999 6888999999999988876 678999999999987

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=1.5e-11  Score=139.66  Aligned_cols=199  Identities=16%  Similarity=0.161  Sum_probs=156.8

Q ss_pred             ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce--EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001358          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG  520 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  520 (1092)
                      .|....+.-+.+  .++.+..++.+.+||...+..+..+.......  .++.+-.+.+.-++++|+.-+.|.+|++....
T Consensus        89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            344455666666  57777778899999998887776665332221  12222234555789999999999999998555


Q ss_pred             ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001358          521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD  599 (1092)
Q Consensus       521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d  599 (1092)
                      ....+.+|.+.|..+.++.||+++++++.    |..+++|++.+++... ..-+|.   ..+..++|.|+  .++++++|
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged  237 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED  237 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence            55578999999999999999999999987    6679999999998877 556666   89999999998  89999999


Q ss_pred             CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      -+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|++...
T Consensus       238 ctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  238 CTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            999999765 444456666544 46899999999999999999999999998754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.61  E-value=1.4e-10  Score=119.86  Aligned_cols=104  Identities=11%  Similarity=0.070  Sum_probs=82.2

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCC
Q 001358          801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARS  875 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~  875 (1092)
                      .-+.|.++..++||++++++.+ ..+.+.|+.++.....-+...+-|+.++|+| +++++|.+--+|    .|+++|+.+
T Consensus       400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence            3456778889999998888876 7799999999887666666778899999999 999999988777    789999999


Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeC
Q 001358          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGG  906 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~  906 (1092)
                      ++....-. ..+.=.+-+|.||+++|..-+.
T Consensus       479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             CeEEEecC-CcccccCcccCCCCcEEEEEec
Confidence            88655443 2333346789999999876553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.61  E-value=1.6e-09  Score=131.72  Aligned_cols=510  Identities=12%  Similarity=0.131  Sum_probs=288.1

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEE----EccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ...+.|.++.|-+|...|+.+..+|.|.+.    +..+.. +.   ....-...|.+++||||+.  +|+....++++.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~  146 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL  146 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence            355789999999999999999999999999    444422 11   2334566899999999999  5666666788877


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEc----------CCCCc----eEEecCCCCceEEE
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY----------DSLGA----RVDYDAPGLGCTRM  535 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~----------~~~~~----~~~~~~~~~~i~~~  535 (1092)
                      -+ .+-..+....-+.....         ....++.+..+.=.-+.=          +....    ...+. ....-..+
T Consensus       147 mt-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I  215 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI  215 (928)
T ss_pred             Ee-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence            65 55555554433321110         011222221111000000          00000    01111 22345678


Q ss_pred             EEecCCCEEEEEecCCC-C-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCC
Q 001358          536 AYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKV  610 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~  610 (1092)
                      +|-.||.++++.+.+.. + ...+++|+.+ |.+..+.....   +--.+++|-|.|+.+++...   ...|.+|.. +|
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NG  290 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NG  290 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CC
Confidence            99999999998876332 2 5889999965 76655554333   45567899999999988653   455777764 44


Q ss_pred             ceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCce
Q 001358          611 QLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1092)
Q Consensus       611 ~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  688 (1092)
                      -....+...  .....|..+.|++|+..||+...|. |.+|...+-...-...-        .+.               
T Consensus       291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~---------------  346 (928)
T PF04762_consen  291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS---------------  346 (928)
T ss_pred             cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc---------------
Confidence            444444433  2334689999999999999988765 99998876543322110        000               


Q ss_pred             eecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCC-cEEEEeecCCeeEEeeecCCc
Q 001358          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRND  767 (1092)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~lw~~~~~~  767 (1092)
                                                                  ....+..+.|+|.. ..|...+.+|.+..+++..  
T Consensus       347 --------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~--  380 (928)
T PF04762_consen  347 --------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW--  380 (928)
T ss_pred             --------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE--
Confidence                                                        01112225555532 3355555556666555421  


Q ss_pred             cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceee-----EEecC
Q 001358          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTI-----LTIMP  841 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~-----~~~~~  841 (1092)
                                      ++..+.                   ..+| |...+++..+.++.+-.+...-..     ..+. 
T Consensus       381 ----------------~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-  424 (928)
T PF04762_consen  381 ----------------DVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-  424 (928)
T ss_pred             ----------------EEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-
Confidence                            111110                   0111 222344444556777666543221     2222 


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--------eEeec----------cccCCeEEEEEcCCCCEEEE
Q 001358          842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVS  903 (1092)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~s  903 (1092)
                      ....|.+++|++ ++..+|+-..||.+.+|.......        ...+.          .-...+..++|..+...++.
T Consensus       425 ~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (928)
T PF04762_consen  425 LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL  503 (928)
T ss_pred             CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence            346899999999 777799999999999998544321        11111          12345788899888877776


Q ss_pred             EeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCc
Q 001358          904 SGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSV  979 (1092)
Q Consensus       904 ~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~  979 (1092)
                      ...+   ..+.++++...+...  .........   +.+..+...++...++. ..+|.+..++..........++. .-
T Consensus       504 ~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c  577 (928)
T PF04762_consen  504 SDSDSNQSKIVLVDIDDSENSA--SVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PC  577 (928)
T ss_pred             EecCcccceEEEEEeccCCCce--eEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CC
Confidence            6654   578888885432111  111111111   13455555566553444 67888887766543322211211 22


Q ss_pred             CEEEEEEecCCC---EEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEE
Q 001358          980 PISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus       980 ~v~~l~fs~dg~---~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
                      .-..++...+..   .++.-+..|.+++    ++..++              ..+.  +++.+   +.+|+.......++
T Consensus       578 ~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~t--SF~v~---~~~Ll~TT~~h~l~  634 (928)
T PF04762_consen  578 PWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCT--SFAVT---DSFLLFTTTQHTLK  634 (928)
T ss_pred             cEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCc--eEEEE---cCEEEEEecCceEE
Confidence            223333333333   3443344454443    444442              1233  44555   36788888888999


Q ss_pred             EEecC
Q 001358         1057 VIEPN 1061 (1092)
Q Consensus      1057 ~w~~~ 1061 (1092)
                      +.++.
T Consensus       635 fv~L~  639 (928)
T PF04762_consen  635 FVHLN  639 (928)
T ss_pred             EEECc
Confidence            99997

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.60  E-value=1.7e-11  Score=139.39  Aligned_cols=200  Identities=15%  Similarity=0.151  Sum_probs=151.7

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|....+.-+.+ .++.+..++.+.|||...+.......       .+.+..        -....-+.++++.-++++|+
T Consensus        89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~-------~~er~~--------l~~~~~~g~s~~~~~i~~gs  152 (967)
T KOG0974|consen   89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQ-------SDERCT--------LYSSLIIGDSAEELYIASGS  152 (967)
T ss_pred             cccccchhhhcc-eEEEEEcCceEEEEecccCceehhcC-------CCceEE--------EEeEEEEeccCcEEEEEecc
Confidence            444455555665 57888888999999998877664211       000000        01223355778888999999


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcceEEEeec
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPH  494 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~  494 (1092)
                      .-+.|.+|+..... .  ...+.+|.+.|.++.|+.||+  ++++.|.|.++++|++++++.+. ..-+|+..|..++|.
T Consensus       153 v~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~  227 (967)
T KOG0974|consen  153 VFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL  227 (967)
T ss_pred             ccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEec
Confidence            99999999998332 1  114789999999999999999  89999999999999999998876 667899999999996


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      +.    .+++++.|-+.++|+.+..... .+..|. ..+..++..++...+++++.    |+.+++|+....
T Consensus       228 ~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  228 PN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR  290 (967)
T ss_pred             cc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence            54    8999999999999976544333 555554 47899999988888888876    666999987643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=2.9e-12  Score=125.94  Aligned_cols=241  Identities=13%  Similarity=0.173  Sum_probs=169.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-----CCcEEEEEC
Q 001358          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA  472 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i~vwd~  472 (1092)
                      ...+++|+.|..-+++|..+| .+||+.+--+...   .-..+.+.+.-+...--.+.+.||-|+.     -..|.|||=
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            445599999999999998888 9999987522211   1111222222222222334434444443     247999997


Q ss_pred             CCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCC--CceEEEEEecCCCEEEEEec
Q 001358          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      ...+++.++. ...+|.++.+...    .|++ -..+.|.||.+. ..+....+....  ....+++-+.+...|+.-+ 
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg-  155 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG-  155 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence            7788888886 7788999998542    3444 356789999887 444444444332  2333333333333444433 


Q ss_pred             CCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCCc
Q 001358          550 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                        ...|.|++-|+...+.  ...+..|.   ..|.+++++-+|..++++|..|+ |||||..+|..+..+........+.
T Consensus       156 --~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  156 --FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             --CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence              2357799999876555  46677777   99999999999999999999987 7999999999999998766667799


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          627 RICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +++|||+..+||++++.|++.|+.+...
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999999999999999999998864

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.60  E-value=1.2e-13  Score=158.13  Aligned_cols=362  Identities=12%  Similarity=0.078  Sum_probs=223.7

Q ss_pred             CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCc---cceecccCC
Q 001358          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS---ECQSLLLPS  730 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~  730 (1092)
                      |..+..+..|...+..++.+                     ++++.++++|+.||+|++|+...-...   ....+.+  
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-- 1094 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-- 1094 (1431)
T ss_pred             ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE--
Confidence            34555666677777666666                     577899999999999999996532222   1111111  


Q ss_pred             ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      ....+++.++...+.+..++.++.||.+++.++.....    ...           .+.+.....+.  ....-+..-+|
T Consensus      1095 s~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~-----------~~~~~ri~n~~--~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1095 SPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKR-----------VATQVRIPNLK--KDGVVVSMHAF 1157 (1431)
T ss_pred             eccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccc-----------eeeeeeccccc--CCCceEEeecc
Confidence            12467889999999999999999999999998765311    000           00111111111  11222333333


Q ss_pred             ecC-CC-EEEEEeC-CeEEEEEcCCceeeEEec--CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec-c
Q 001358          811 SKN-DA-YLFSASG-GVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G  884 (1092)
Q Consensus       811 s~d-g~-~l~~~sd-g~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~  884 (1092)
                      ... +. .++.+.+ +.|..||+.+.....+++  ...+.|++++.+| .+.++++|+..|.+.+||++-+.++..+. +
T Consensus      1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred             cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence            332 23 5555654 889999998776665544  3457899999999 89999999999999999999988887775 3


Q ss_pred             ccCCeEEEEEcCCC---CEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCC----c-------CCCCCceEEEEecCC
Q 001358          885 HSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGV----M-------TLAPSETHIQFHKDQ  948 (1092)
Q Consensus       885 h~~~V~~l~~spdg---~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~-------~~~~~v~~l~~s~dg  948 (1092)
                      +..+|..+...|-.   ...++++  ..+.|.+|++.+|..............    .       +.........+...+
T Consensus      1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred             ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence            55788888777633   4555554  467899999999865443222200000    0       000122333444445


Q ss_pred             CEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcE-EEEECC-----CCceEEeeccccc
Q 001358          949 TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEAS-----NLEVQCRILSTAY 1021 (1092)
Q Consensus       949 ~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i-~vwd~~-----~~~~~~~~~~~~~ 1021 (1092)
                      .++.+ ++|..|+.||....+...-...+.+.......++.+ .-++.++.--.. ......     .+...........
T Consensus      1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred             ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence            55666 689999999998665442222332333333333332 223333221000 011111     1222344455666


Q ss_pred             cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358         1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      .++..|.++|..++....+  ..++++++.||.|.+|.
T Consensus      1396 ~ps~~H~d~Itdma~~~~~--q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSE--QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCcccccchhhhhhhhccC--ccEEEEecCCCeeeecC
Confidence            7777789999988888776  47999999999999994

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.59  E-value=1.6e-13  Score=153.43  Aligned_cols=252  Identities=17%  Similarity=0.203  Sum_probs=185.3

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCce--eeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC--C
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL--FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG--S  409 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~--~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg--~  409 (1092)
                      ..+|+|++|+|....++|.|..+|.|.+||+..+...  ....               .....|..+|+.+.|-.+-  .
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls---------------~~~~sh~~~v~~vvW~~~~~~~  306 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS---------------ALEVSHSEPVTAVVWLQNEHNT  306 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc---------------cccccCCcCeEEEEEeccCCCC
Confidence            3499999999998889999999999999999987652  2111               1255699999999998754  4


Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEec---------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE---CCCCc-
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS-  476 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd---~~~~~-  476 (1092)
                      -+++++.||.|..|++..-........+.         .-...+++++|.+.... .++.|+.+|.|..=+   ...+. 
T Consensus       307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~  385 (555)
T KOG1587|consen  307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPE  385 (555)
T ss_pred             ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCccccc
Confidence            49999999999999887533211110111         12236899999988776 788899999988733   22222 


Q ss_pred             ----eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-CCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          477 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       477 ----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                          .+..+..|.++|+++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++++|||-.-.++++.   
T Consensus       386 ~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---  460 (555)
T KOG1587|consen  386 VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---  460 (555)
T ss_pred             ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---
Confidence                2335567889999999877543 3444444 9999999887 5666667777777799999999887776665   


Q ss_pred             CCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358          552 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      +++|.+.+||+.....  +.+.....   .....+.|+++|+.+++|...|++.+|++..
T Consensus       461 d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            4578899999975432  33332222   5677788999999999999999999999864

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=2.9e-15  Score=164.31  Aligned_cols=339  Identities=18%  Similarity=0.204  Sum_probs=221.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCcCccccccCCCCCCCCcCCCCCCCCCCCCCCCCCCccccCCC----CCcCcccc
Q 001358          171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSS----MLTDSAVS  246 (1092)
Q Consensus       171 rL~~Ll~qa~~~q~~~~~~~~~~~~~~sL~~dh~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  246 (1092)
                      -|..|+-|.+++|+.+|+.|.++.+++|||..|.|++               |-+..+++-++..+..    ..++.+  
T Consensus      1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPE---------------pk~~~~ap~N~t~Rl~~rel~~~y~g-- 1076 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPE---------------PKRLLEAPLNMTGRLGTRELQSFYSG-- 1076 (1516)
T ss_pred             cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCC---------------hHHHhhcchhhhhcccchhhcCcccc--
Confidence            4999999999999999999999999999999999998               3333332222222110    000111  


Q ss_pred             cccccCCCCCcccccccCCCCCCcccCCCccccccccCCcceecCcccCCcCCCCCCCchhhhcccccCCccccCCCcce
Q 001358          247 FVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV  326 (1092)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~  326 (1092)
                                                                    .|+.       ....+.+|.++          ..
T Consensus      1077 ----------------------------------------------V~g~-------~~dr~~IFSRF----------r~ 1093 (1516)
T KOG1832|consen 1077 ----------------------------------------------VHGN-------RRDRQFIFSRF----------RS 1093 (1516)
T ss_pred             ----------------------------------------------cccC-------cccchhhHhhc----------cc
Confidence                                                          0110       00011112221          22


Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .++++.|+..-+|++||-+.+ .|++|+..|.|+++++.+|.....                   ...|+.+|+.+.=|.
T Consensus      1094 w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSV 1153 (1516)
T ss_pred             chhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccC
Confidence            367788999999999999988 699999999999999999988865                   667999999999999


Q ss_pred             CCCEEEEEeCC--CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec
Q 001358          407 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG  483 (1092)
Q Consensus       407 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~  483 (1092)
                      ||..+++.+.-  ....+|++.+-  ....+++.    .-.++.|+..... .++ |..-..+.+||++|+..+.++ .+
T Consensus      1154 dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred             CcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCc
Confidence            99988776443  35789998752  22222332    3457888876553 333 333346899999999887663 22


Q ss_pred             ---CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358          484 ---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ---~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                         ....-+...|+|.  ..+++   .||  .+||.+..+.+..+.... ....-.|+|.|..++..+         .||
T Consensus      1226 ~~~~~y~~n~a~FsP~--D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIw 1288 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPC--DTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIW 1288 (1516)
T ss_pred             chhhhhhccccccCCC--cceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhh
Confidence               1222244556543  33443   344  469998877666554333 112336999999998864         479


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--C---------------CCeEEEEECCCCceEEEEeCCCCCC
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--D---------------DHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~---------------dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      |+++.+.++......     -..+.|+..|+.++..-  .               -...+-++..+.+.+.++....   
T Consensus      1289 D~RTF~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R--- 1360 (1516)
T KOG1832|consen 1289 DMRTFKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR--- 1360 (1516)
T ss_pred             hhHHHHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---
Confidence            999998887776544     45677888887665432  0               0234556666666677776543   


Q ss_pred             CCceEEEccCCCEEEEEeC
Q 001358          624 ENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .+..+|-+|...++++...
T Consensus      1361 ~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1361 CLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred             chhhhhcCCccceEEEEec
Confidence            3566777777777766543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.4e-14  Score=149.56  Aligned_cols=245  Identities=13%  Similarity=0.178  Sum_probs=170.3

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ..+.|.||++-|.|++|+.||. +|++||.|-.+.|||.-..+.++.                  +-+||...|.++.|-
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv  102 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV  102 (758)
T ss_pred             hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence            3478999999999999999998 899999999999999987766653                  367899999999999


Q ss_pred             C--CCCEEEEEeCCCEEEEEEccCCC-------CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       406 p--dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      |  +.+.+++|..|..|+++|+...+       ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|+....
T Consensus       103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence            9  57788999999999999998521       12223345679999999999999965 79999999999999987532


Q ss_pred             -eeEE---------EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEE-EecC
Q 001358          477 -RTYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN  540 (1092)
Q Consensus       477 -~~~~---------~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d  540 (1092)
                       +...         +...--...++.++|. +..+|+.|+.|-..++||.+...+...     ...+..+..++. |+|.
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~  260 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG  260 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence             1111         1111123456677766 347999999999999999543211110     011111222222 2222


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001358          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      +-    ..              ..|.....       ...++.++|+|+|.-+++.-....|+++|+..++.....
T Consensus       261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            21    00              00111000       023667899999988888766678999999887765544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3.2e-12  Score=137.70  Aligned_cols=510  Identities=12%  Similarity=0.140  Sum_probs=302.1

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC------------ccceEEecccccceeEEEeeCCCCcEEEEEEe
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG  462 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~  462 (1092)
                      ......|++|+....|+|+|+.||.+++-.+.+...            +....++.||.+.|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            456789999999999999999999999998875432            112236789999999999998887  699999


Q ss_pred             CCCcEEEEECCCCceeEEEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC
Q 001358          463 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN  540 (1092)
Q Consensus       463 ~d~~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d  540 (1092)
                      .+|.|.||-+-.|.-...+.  .....|.+++|  +.||..+.....||.|.+=.++..+ +.--...+.....+.|++|
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence            99999999988776544332  24456788888  4577888888888888776554322 1111122223456889999


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCC-------eEEEEEeec-cccCCceEEEEEc--------CCCCEEEEEeCCCeEEE
Q 001358          541 GRRLFSCGTSKEGESFLVEWNESEG-------AIKRTYQGL-QLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~l~~~s~dg~i~i  604 (1092)
                      .+.++.+-.    ++.+.++|.+..       .+.....+. ......+..+.|.        |+...++++-.+|.+.|
T Consensus       168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence            988877654    445888886532       111111111 0001234445553        57889999999999988


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe---------EEEEECCCCCeeeecccccccceeeeecCC
Q 001358          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR---------IKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~---------i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      -.-.+......+...   ..+....|+++|..|++++.+..         |.+|. .-+..+..++.+.           
T Consensus       244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg-----------  308 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPG-----------  308 (1189)
T ss_pred             hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCC-----------
Confidence            765544433333322   34778899999999999987532         11111 1122222233233           


Q ss_pred             cccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC
Q 001358          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  755 (1092)
                                                                                 ..|+++.|-..|-+++. .-|
T Consensus       309 -----------------------------------------------------------~~It~lsWEg~gLriA~-Avd  328 (1189)
T KOG2041|consen  309 -----------------------------------------------------------SCITGLSWEGTGLRIAI-AVD  328 (1189)
T ss_pred             -----------------------------------------------------------ceeeeeEEcCCceEEEE-Eec
Confidence                                                                       33444444444332222 222


Q ss_pred             CeeEEeeecCCcc----------ccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCe
Q 001358          756 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  824 (1092)
Q Consensus       756 g~i~lw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~  824 (1092)
                      +.|++=++...-.          ...+.......+..||..+.+....       .-....+++++.+--.|+.-. ++.
T Consensus       329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~  401 (1189)
T KOG2041|consen  329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV  401 (1189)
T ss_pred             ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence            2333322211100          0011111223455677666553322       223455677766655555444 355


Q ss_pred             EEEEEc-CCceeeEEec----------CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------
Q 001358          825 ISLYIV-MTFKTILTIM----------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---------------  878 (1092)
Q Consensus       825 i~iwd~-~~~~~~~~~~----------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~---------------  878 (1092)
                      +.-++. ++...+..+.          ..-..|.-.-..- ++..++.++.+ .+.+|.....+.               
T Consensus       402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~  479 (1189)
T KOG2041|consen  402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRF  479 (1189)
T ss_pred             CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccc
Confidence            544421 1111111110          0001122111222 56677777766 477786533211               


Q ss_pred             -----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceE
Q 001358          879 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       879 -----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1092)
                                       ..++.|..++|-+++.|  .++|..+-..|.|.-+.+...-.     .....-.    ..+.+
T Consensus       480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l-----~n~y~~n----~~~y~  548 (1189)
T KOG2041|consen  480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVL-----TNSYPVN----PSIYS  548 (1189)
T ss_pred             cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceee-----eeccccC----chhee
Confidence                             13445667788888876  57888899999999999987432     2222221    35889


Q ss_pred             EEEecCCCEEEE-EeCCcEEEEEcC---CceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          942 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       942 l~~s~dg~~la~-~~d~~v~lwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      ++.+-+...+|+ -.-|.+.+.|+.   +|..+.-+.......|+.+.|..|...|++--....++|++-.
T Consensus       549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgn  619 (1189)
T KOG2041|consen  549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGN  619 (1189)
T ss_pred             EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCc
Confidence            999999998888 355677777665   4555554555567789999998888766655555556666543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.57  E-value=1e-12  Score=129.10  Aligned_cols=239  Identities=12%  Similarity=0.182  Sum_probs=169.2

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCC--CeEEEEEcCCCCCEEE-EEeCC------CeEEEEEc
Q 001358          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA-IGMDD------STILIYNA  873 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-sg~~d------g~v~iwd~  873 (1092)
                      ....+++|.-|...++++.+...+||+++..+.....+.+.+  .+..+-|-   .++|| +|+.+      ..|.|||=
T Consensus         6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence            345569999999999999999999999986554333222222  33334443   23444 44443      38999996


Q ss_pred             CCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec--CCCEE
Q 001358          874 RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRF  951 (1092)
Q Consensus       874 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l  951 (1092)
                      ...+++..+. ...+|.++.+++|  .++.. -.+.|+||.+...-.. ...+.+.....    .  -++..|  .-.+|
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~-l~~~et~~NPk----G--lC~~~~~~~k~~L  151 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKL-LHVIETRSNPK----G--LCSLCPTSNKSLL  151 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhh-eeeeecccCCC----c--eEeecCCCCceEE
Confidence            6677788777 7788999999877  55554 3566999999853211 12222222111    1  233333  33444


Q ss_pred             EE-E-eCCcEEEEEcCCcee-eeeeccCCCcCEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEeeccccccCCCCc
Q 001358          952 LL-V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTS 1027 (1092)
Q Consensus       952 a~-~-~d~~v~lwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~ 1027 (1092)
                      |. | .-|+|+|-|+...+. ......+|...|.+++.+-+|.+|||+|..|+ |||||..+|+.++.++...      .
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------d  225 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------D  225 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------c
Confidence            54 4 458999999986665 34457789999999999999999999999998 8999999999999987322      1


Q ss_pred             cCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358         1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1028 ~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      ...|+  +++|+| +..+|+++++-|+|++|.+.+..
T Consensus       226 ~A~iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  226 RADIY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             hheEE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            22355  889999 58999999999999999998755

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.5e-12  Score=129.67  Aligned_cols=260  Identities=12%  Similarity=0.114  Sum_probs=165.6

Q ss_pred             cccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC
Q 001358          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  813 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d  813 (1092)
                      ...|++++|-|.+..-++.+-.+.|.+|........       ...++   ..+..+...  +..++| ..|+++.+.+|
T Consensus       140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~---~~s~~~~qv--l~~pgh-~pVtsmqwn~d  206 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIR---MMSTHHLQV--LQDPGH-NPVTSMQWNED  206 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccc---cccccchhh--eeCCCC-ceeeEEEEcCC
Confidence            345788888887776777777778899986543210       00001   011111111  222345 78999999999


Q ss_pred             CCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEE
Q 001358          814 DAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       814 g~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      |..+++++  +..|.|||..++..+.-.....+.++-+.||| |+.+|+.++-|+..++|+.....-..+..--.+.|+.
T Consensus       207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt  285 (445)
T KOG2139|consen  207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT  285 (445)
T ss_pred             CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence            99999998  57899999999887766555667899999999 8999999999999999965543323333334558999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCce----------eeeeee------ecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001358          892 LVFSDALNILVSSGGDAQIFVWDVDGWGI----------QTCRSL------QTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       892 l~~spdg~~l~s~s~Dg~i~iwd~~~~~~----------~~~~~~------~~~~~~~~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                      .+|+|+|.+|..+.. |.=++|.+.-...          .....+      ....+..-..+.+.+++|.|.|.+||+..
T Consensus       286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            999999988765543 2334555432110          000111      11112111225789999999999999953


Q ss_pred             C---------CcEEEEEcCCceeeeeeccCC--CcCEEEEEEec---CCCEEEEEeCCCcEEEEECC
Q 001358          956 E---------THLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       956 d---------~~v~lwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      .         ..|.+||....-.+...+.+-  ......++|.|   +|.+|..+=+-|.+.-|++.
T Consensus       365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            2         236677776544333322121  22355667776   66777777777777777654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.5e-12  Score=147.60  Aligned_cols=238  Identities=10%  Similarity=0.114  Sum_probs=157.7

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEEccCCCCccc
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---SKHIVQLYAYHGGSDARQ  433 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---~d~~i~iwd~~~~~~~~~  433 (1092)
                      ..|.+||.+.+....                    +..+...+.+.+|||||+.||..+   .+..|.+|++.+|+... 
T Consensus       179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-  237 (429)
T PRK03629        179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-  237 (429)
T ss_pred             eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence            368888887665432                    445677899999999999999764   24579999998875322 


Q ss_pred             eEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC-Ce
Q 001358          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK  510 (1092)
Q Consensus       434 ~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~  510 (1092)
                         +....+.+...+|+|||+.+ +++.+.++  .|.+||+++++..+ +..+...+....|  ++||+.|+..+.+ +.
T Consensus       238 ---l~~~~~~~~~~~~SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~w--SPDG~~I~f~s~~~g~  310 (429)
T PRK03629        238 ---VASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTW--FPDSQNLAYTSDQAGR  310 (429)
T ss_pred             ---ccCCCCCcCCeEECCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEE--CCCCCEEEEEeCCCCC
Confidence               22233345578999999952 33334444  58999998887654 3334445666777  4577777766654 55


Q ss_pred             EEEE--EcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       511 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      ..+|  |+..+.. ..+...........|+|||++++..+... +...|++||+.+++... +...    .......|+|
T Consensus       311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp  383 (429)
T PRK03629        311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP  383 (429)
T ss_pred             ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence            5555  5554433 33333444556789999999998876432 35679999998887543 3321    1234578999


Q ss_pred             CCCEEEEEeCCCe---EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       589 ~~~~l~~~s~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ||+.++.++.++.   +.++++ +|.....+..+.  ..+...+|+|
T Consensus       384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence            9999999887664   677777 455555555432  2467788876

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.56  E-value=6.8e-13  Score=130.28  Aligned_cols=232  Identities=15%  Similarity=0.177  Sum_probs=175.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC-C
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V  473 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~-~  473 (1092)
                      -..+|+|.||++|+..+|++-....|.||...........+++..|...|+.++|+|.+.  .|++|+.|...+||.. .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence            346899999999999999999999999999998887777889999999999999999998  6999999999999997 4


Q ss_pred             CC--ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEecCCCEEEEE
Q 001358          474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       474 ~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      .+  ++.-.+..+....+++.|+|.+  ..+++|+....|.||=++....-.    .-......|.++.|+|++-+|+++
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            44  3344556688899999997654  689999999999999776654332    233445678999999999999998


Q ss_pred             ecCCCCceeEEEEeC-----CC-------------CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358          548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      +.    |+..+++..     +.             |+++..+..   ..+.+..+.|+|+|+.|+-.+.|.++.+-|...
T Consensus       165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            86    444565532     11             222333332   247899999999999999999999999999877


Q ss_pred             Cc-eEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358          610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       610 ~~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      .. .+.......  -+..++.|-.+...+++
T Consensus       238 p~~~v~~~~~~~--lP~ls~~~ise~~vv~a  266 (361)
T KOG1523|consen  238 PSERVQSVATAQ--LPLLSVSWISENSVVAA  266 (361)
T ss_pred             Cchhccchhhcc--CCceeeEeecCCceeec
Confidence            65 233332221  23456666554443333

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.3e-12  Score=147.25  Aligned_cols=237  Identities=13%  Similarity=0.072  Sum_probs=161.3

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCCccc
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  433 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  433 (1092)
                      ..|.+||...+....                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            478888886554332                    5568889999999999999998763   468999999987532  


Q ss_pred             eEEecccccceeEEEeeCCCCcEEEEEEeCCCc--EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CC-
Q 001358          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG-  509 (1092)
Q Consensus       434 ~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg-  509 (1092)
                        .+..+.+.+.+.+|+|||+. ++++.+.++.  |.+||+.+++. ..+..+........|  ++||+.|+..+. +| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~--spDG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSY--SPDGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeE--cCCCCEEEEEECCCCC
Confidence              34556677889999999995 3445665655  77789888765 445556655666677  457777776653 34 


Q ss_pred             -eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       510 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                       .|.++|+....... +......+....|+|||+.|+...... +...|.+||..++.. +.+.. .   ..+....|+|
T Consensus       314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp  386 (435)
T PRK05137        314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP  386 (435)
T ss_pred             CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence             57777876554433 333344566788999999998876432 356799999866543 33322 1   2456788999


Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       589 ~~~~l~~~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ||+.++..+.+      ..++++|+..+.. ..+...+   .+...+|+|
T Consensus       387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp  432 (435)
T PRK05137        387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP  432 (435)
T ss_pred             CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence            99998775532      3578888876554 3443222   356667776

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.55  E-value=2.1e-14  Score=147.37  Aligned_cols=270  Identities=16%  Similarity=0.171  Sum_probs=213.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      .......+.++.+|++|+.|+..|.|..+|+.++....   ++. -...|.++.|..+.+  +++ ......++||| ..
T Consensus       128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~  199 (545)
T KOG1272|consen  128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NN  199 (545)
T ss_pred             cccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHH-hhhhceEEEec-CC
Confidence            34567789999999999999999999999999986554   332 345789999998887  444 45577899999 88


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      |..++.++.|. .|..+.|.|..  -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|..    +
T Consensus       200 GtElHClk~~~-~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----n  272 (545)
T KOG1272|consen  200 GTELHCLKRHI-RVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----N  272 (545)
T ss_pred             CcEEeehhhcC-chhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----C
Confidence            88898887554 67788886654  57888999999999999999998888888888999999998887777765    7


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++|.+|.+.+.+.+..+..|.   ++|.++++.++|.++++++.|..++|||++....+.+.....   ....+++|..|
T Consensus       273 GtVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg  346 (545)
T KOG1272|consen  273 GTVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG  346 (545)
T ss_pred             ceEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc
Confidence            789999999999999999988   999999999999999999999999999999888776665422   35778888766


Q ss_pred             CEEEEEeCCCeEEEEECCCC-----CeeeecccccccceeeeecCCcccccccccCCc
Q 001358          635 TLLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  687 (1092)
                      . ||. +....+.||.-...     .....-......|..+.|+|....+++|-..|-
T Consensus       347 l-LA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  347 L-LAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             c-eee-ecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence            3 333 34457889953211     111111222348899999999998888766653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=3.1e-14  Score=146.09  Aligned_cols=273  Identities=18%  Similarity=0.189  Sum_probs=212.6

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ....+.|+.+|+. ++.|+..|.|..+|+.++.......                    -...|..+.|-.+.+++|++ 
T Consensus       131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVA-  188 (545)
T KOG1272|consen  131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVA-  188 (545)
T ss_pred             CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhh-
Confidence            6778999999995 6667777999999999998876533                    23578899999999999998 


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      ....++|||-.. ..+.   .++.| ..|..+.|.|---  +|++++..|.++.-|+.+|+.+..+....+.+..++-+|
T Consensus       189 QK~y~yvYD~~G-tElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  189 QKKYVYVYDNNG-TELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             hhceEEEecCCC-cEEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            455699999765 3333   34444 4699999999765  899999999999999999999999988888888888765


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      .+  ..+-+|...|+|.+|.....++...+..|.++|.++++.++|+++++.+.    |..+.|||+++-..+.++.. .
T Consensus       262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t-p  334 (545)
T KOG1272|consen  262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT-P  334 (545)
T ss_pred             cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec-C
Confidence            43  57888999999999999999999999999999999999999999999987    66699999998877666665 2


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCc--eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001358          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1092)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  649 (1092)
                         .+...+++|..|  +++.+....|.||. .-.+.  .-...-.|.....|..+.|.|-...|.+|...|.-.|.
T Consensus       335 ---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  335 ---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             ---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence               467778888765  55666667899994 33322  11111112222368899999988888887766654443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=6e-11  Score=128.13  Aligned_cols=533  Identities=10%  Similarity=0.090  Sum_probs=321.3

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ...|++|+.... ++|+|+.||.++|-.+.+...-....    .+.+.........+.||++.|.-+.|+.+.+.|-+..
T Consensus        16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            678999999988 69999999999999987754322100    0112222233345899999999999999999999999


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcceEEEeec
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~i~~~  494 (1092)
                      .+|.|.+|-+-.|.-..... -......|.+++|+.||.  .++....||.|.|=.++..+.- +.+++.  ....+.| 
T Consensus        91 t~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w-  164 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW-  164 (1189)
T ss_pred             CCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence            99999999998876544321 123556799999999999  6777788888877665443221 122221  1223445 


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCC-------ceE----EecCCCCceEEEEEe--------cCCCEEEEEecCCCCce
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~dg~~l~~~~~~~~~~~  555 (1092)
                       ++|.+.++.+-..|.++++|.+..-       +..    .+......+..+.|.        ||...++.|..    ++
T Consensus       165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG  239 (1189)
T KOG2041|consen  165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG  239 (1189)
T ss_pred             -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence             4466677777788999999865321       111    111122234445442        47778888875    34


Q ss_pred             eEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          556 FLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       556 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      .+.+....+ ..++-.-.+     -.+....|+++|..+++++.+         +.|.+|.. -|..+.++..++.  .|
T Consensus       240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~--~I  311 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS--CI  311 (1189)
T ss_pred             eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc--ee
Confidence            455543322 222222222     357788999999999998743         24555553 4677788877654  58


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCCee--------eecccccccceeeeecCCcccccccccCCceeecCCCCCC
Q 001358          626 PRICFNKNGTLLAVIANENRIKILETPESNSV--------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  697 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  697 (1092)
                      ++++|-..|-.++.+- |+.|++=+++..-..        ........+.                              
T Consensus       312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~------------------------------  360 (1189)
T KOG2041|consen  312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQ------------------------------  360 (1189)
T ss_pred             eeeEEcCCceEEEEEe-cceEEEEeecccceEEEeeeEEEEEEccCCCcc------------------------------
Confidence            9999988777776654 567777665543111        1111111111                              


Q ss_pred             cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccc
Q 001358          698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  777 (1092)
Q Consensus       698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~  777 (1092)
                                -.|.+||..+++..-.         ......++++..+.-.|+.-..+|.+.-++--.+.       ...
T Consensus       361 ----------y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~-------~~~  414 (1189)
T KOG2041|consen  361 ----------YGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR-------SRV  414 (1189)
T ss_pred             ----------eEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc-------cce
Confidence                      2345566543322111         11223455666555555555555554433100000       000


Q ss_pred             cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee----------------------
Q 001358          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT----------------------  835 (1092)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~----------------------  835 (1092)
                      ....+.+.- |.     .+.  ..-..|.-.-..-++.+++.++...+.+|.....+.                      
T Consensus       415 ~~l~LCNSI-GT-----~lD--~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~  486 (1189)
T KOG2041|consen  415 YFLQLCNSI-GT-----SLD--YKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE  486 (1189)
T ss_pred             EEEeeeccc-CC-----cCC--CCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence            000000000 00     000  011122222333477888888888888887532110                      


Q ss_pred             ----------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358          836 ----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       836 ----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                                ..++.+..++|.+++.+   .++|.++-..|.|.-|.+.+........ -+..|.++++.-+...+|...
T Consensus       487 ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId  562 (1189)
T KOG2041|consen  487 GAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIID  562 (1189)
T ss_pred             chhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhh
Confidence                      12345566788888886   4699999999999999999877666655 456789999988889999988


Q ss_pred             CCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC
Q 001358          906 GDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE  966 (1092)
Q Consensus       906 ~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~  966 (1092)
                      .-|.+.+.|+.- ........+...+.     ..|..+.|..|+..+++- ....++|++-.+
T Consensus       563 ~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgnd  620 (1189)
T KOG2041|consen  563 LVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGND  620 (1189)
T ss_pred             hhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence            899999998872 22222222222222     258899999998877774 444577777543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.2e-12  Score=148.55  Aligned_cols=234  Identities=14%  Similarity=0.106  Sum_probs=153.3

Q ss_pred             ccCCCcceeEecccCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC
Q 001358          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      +.+......+.+..+.+.+...+|||||+.++.+..  .+..|.+||+.+|+...                    +....
T Consensus       183 ~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~  242 (429)
T PRK03629        183 VSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFP  242 (429)
T ss_pred             EEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCC
Confidence            344444444556667778999999999996544332  23579999999886543                    12223


Q ss_pred             CcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CCc--EEEE
Q 001358          397 VSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVW  470 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~--i~vw  470 (1092)
                      +.+..++|||||+.|+.. +.++  .|.+||+.+++..    .+..+...+....|+|||+  .|+..+. ++.  |.++
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEE
Confidence            345568999999999876 3344  5999999887533    2444555688999999999  4554443 344  5555


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      |+.+++. ..+..+........|  ++||++|+..+.+   ..|.+||+.++.... +.. ........|+|||+.|+..
T Consensus       317 d~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~  391 (429)
T PRK03629        317 NINGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYS  391 (429)
T ss_pred             ECCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEE
Confidence            7766654 344334444455666  4577788776543   358888988765443 222 1233467899999999998


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      +.++. ...+++++. +|...+.+.++.   +.+...+|+|
T Consensus       392 s~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp  427 (429)
T PRK03629        392 SSQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP  427 (429)
T ss_pred             EcCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence            86443 556888887 455556666655   6677788877

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.6e-12  Score=137.20  Aligned_cols=283  Identities=13%  Similarity=0.184  Sum_probs=204.3

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      +|...-+.+..||||+|++|+|..--.|++||+..-.......+                   ....|.-.-.|-|-..+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS  109 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence            45668889999999999999999999999999987654432111                   23456666667676777


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      +.-..|.+|.+..-.+ ...    .++ -...-..++++.-...  |+.++....|+-.+++.|+.+..+....+.++++
T Consensus       110 v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v  181 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV  181 (703)
T ss_pred             eEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence            7777888776644322 111    011 1112234555544443  4444445578899999999999998888999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------C-----CceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------G-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~-----~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      ..++.  ..+|++|+.+|.|.+||.+.......+...      .     ..|+++.|+.+|-.+++|..    .|.+++|
T Consensus       182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy  255 (703)
T KOG2321|consen  182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY  255 (703)
T ss_pred             eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence            88654  368999999999999999887665544322      1     24899999999999999876    6679999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      |+++.+.+..-. |. ..-+|..+.|.+.+  +.+++ .....++|||-.+|+....+...   ..++.+|+-|++.+++
T Consensus       256 DLRa~~pl~~kd-h~-~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  256 DLRASKPLLVKD-HG-YELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF  329 (703)
T ss_pred             EcccCCceeecc-cC-CccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence            999888764433 22 23678889997763  33444 34577999999999999888654   4589999999999999


Q ss_pred             EEeCCCeEEEEECCC
Q 001358          639 VIANENRIKILETPE  653 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~  653 (1092)
                      ++-.++.+..|-++.
T Consensus       330 ~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  330 TANESSKMHTYYIPS  344 (703)
T ss_pred             EecCCCcceeEEccc
Confidence            999988887776654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.54  E-value=5.3e-09  Score=127.27  Aligned_cols=569  Identities=11%  Similarity=0.122  Sum_probs=308.1

Q ss_pred             CCCCceEEeecCCCceEEEEEcCcCcEEEE----ecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ..+.|.++.|-+|.. -+..+..+|.|.+.    +..+.....                    ...-...|.+++||||+
T Consensus        74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence            346899999999997 46777788999999    555544332                    22245789999999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce-----------
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-----------  477 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-----------  477 (1092)
                      ..||..+.++++.+-+-.- +.+.   +..-+..     .|-. +   ..++.|.-+.=.-+.-..|+.           
T Consensus       133 Ella~vT~~~~l~~mt~~f-d~i~---E~~l~~~-----~~~~-~---~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~  199 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRDF-DPIS---EVPLDSD-----DFGE-S---KHVSVGWGKKETQFHGSAGKAAARQLRDPTVP  199 (928)
T ss_pred             CEEEEEeCCCEEEEEeccc-eEEE---EeecCcc-----ccCC-C---ceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence            9999999999887764321 1111   1111110     1100 1   133332211111111011111           


Q ss_pred             ---eEEEecCCcceEEEeecccCCccEEEEEec---C---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          478 ---TYSFEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       478 ---~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                         ...+. +...-..++|  .+||.++++.+.   .   ..+|||+-+ +......+...+--.+++|.|.|+++++..
T Consensus       200 ~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q  275 (928)
T PF04762_consen  200 KVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQ  275 (928)
T ss_pred             ccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEE
Confidence               01112 2333344555  779999998875   3   469999754 332223332333345789999999999887


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeecc-ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEeCCCCCCCC
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPEN  625 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~v  625 (1092)
                      . ......|..|. ++|-.-..|.-.. .....|..+.|++++..|+..-.|. |.+|...+...  .+.+..... ..+
T Consensus       276 ~-~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~  351 (928)
T PF04762_consen  276 R-LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESV  351 (928)
T ss_pred             E-cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCC
Confidence            5 23345676776 4555555554431 1246799999999999999977655 99999887653  334443322 234


Q ss_pred             ceEEEcc-CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceee
Q 001358          626 PRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  704 (1092)
Q Consensus       626 ~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  704 (1092)
                      ..+.|+| +...|.+.+.+|.+..++..-..               ..++..                  +|+..-.+..
T Consensus       352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~vaV  398 (928)
T PF04762_consen  352 NFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTVAV  398 (928)
T ss_pred             CceEECCCCCCEEEEEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEEEE
Confidence            5699999 45567788777887766543110               000000                  0111111111


Q ss_pred             ccccccceecee---eccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358          705 EAENKSEVEKPL---FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       705 ~~d~~i~~w~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      -...++++-.+.   .+.|.....+.     -...|..++|++++..+++...||.+.+|.++.............    
T Consensus       399 IDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~----  469 (928)
T PF04762_consen  399 IDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLL----  469 (928)
T ss_pred             EeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchh----
Confidence            011123332221   11222223333     345799999999999899999999999999766432210000000    


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC----CeEEEEEcCCce---eeEEecCCCCCeEEEEEcCC
Q 001358          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPH  854 (1092)
Q Consensus       782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~  854 (1092)
                       ....... ......  ......+..++|..+..+++....    ..+.+++....+   .......-.+.+..+...+ 
T Consensus       470 -~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  544 (928)
T PF04762_consen  470 -SSISLDS-MDISDS--ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-  544 (928)
T ss_pred             -hhccccc-cccccc--ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-
Confidence             0000000 000000  013456778888888877776653    458888874332   2333333445555555665 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcee-eEeeccccCCeEEEEEcCCC--CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC
Q 001358          855 DNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG  931 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~  931 (1092)
                      +...++.-..+|.+...+...... +..|..-...+..+.+....  ..++.-+..|.+++   .+ .     .+.    
T Consensus       545 ~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la----  611 (928)
T PF04762_consen  545 DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA----  611 (928)
T ss_pred             CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe----
Confidence            444466677899998776654322 22333222222223332222  14444455554443   21 1     111    


Q ss_pred             CcCCCCCceEEEEecCCCEEE-EEeCCcEEEEEcC-CceeeeeeccC----CCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001358          932 VMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPI----SSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       932 ~~~~~~~v~~l~~s~dg~~la-~~~d~~v~lwd~~-~~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
                           ..++++++  .+.+|+ +.....+++.++. ....+......    +...+..+   .-|..|+++-....=.|-
T Consensus       612 -----~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~V---ERGsriVt~vp~~~~vVL  681 (928)
T PF04762_consen  612 -----SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRV---ERGSRIVTAVPSDTSVVL  681 (928)
T ss_pred             -----cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccC---ccCCEEEEEeCCCceEEE
Confidence                 13566666  344444 4666778888887 11111111111    11122322   367788887766566778


Q ss_pred             ECCCCceE
Q 001358         1006 EASNLEVQ 1013 (1092)
Q Consensus      1006 d~~~~~~~ 1013 (1092)
                      .++.|.+.
T Consensus       682 QmPRGNLE  689 (928)
T PF04762_consen  682 QMPRGNLE  689 (928)
T ss_pred             EcCCCchh
Confidence            89988775

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=1.4e-12  Score=128.09  Aligned_cols=205  Identities=14%  Similarity=0.137  Sum_probs=163.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCC---ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-C
Q 001358          801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMT---FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-S  875 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~  875 (1092)
                      ...+|+|.+|++|+..+|++.. ..+.||....   .+..+++..|...|+.+.|+| ..+.|++++.|..-++|... .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence            3568999999999999999975 6899998764   457889999999999999999 88899999999999999984 3


Q ss_pred             c--eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358          876 S--EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       876 ~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      +  ++.-.+..|...++++.|+|.++.+|+||..+.|.||=++...  ...+-+.....  ....|.+++|.|++-+|++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN--dWWVsKhikkP--irStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN--DWWVSKHIKKP--IRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc--ceehhhhhCCc--cccceeeeeccCCcceecc
Confidence            3  4455566699999999999999999999999999999887632  11111111111  1136999999999999999


Q ss_pred             -EeCCcEEEEEcC-----C-------------ceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358          954 -VHETHLAIYEAE-----E-------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       954 -~~d~~v~lwd~~-----~-------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                       +.|+..+|+..-     .             |+.+.++ ....+.|..+.|||+|..|+-.+.|+++.+=|.....
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence             579988888641     1             1222221 1347889999999999999999999999999988775

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.8e-11  Score=129.77  Aligned_cols=286  Identities=11%  Similarity=0.115  Sum_probs=188.5

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-  414 (1092)
                      .....++|++|+ ++|.+. +..++|++..++..+.+                     -....+.++.|||-|.+|.+- 
T Consensus        36 ~~~v~~~S~~G~-lfA~~~-~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T~e   92 (566)
T KOG2315|consen   36 PCNVFAYSNNGR-LFAYSD-NQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLTWE   92 (566)
T ss_pred             cceeEEEcCCCc-EEEEEc-CCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccccc
Confidence            477889999998 677754 47899999998864432                     122378899999999999873 


Q ss_pred             ----eCC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358          415 ----YSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       415 ----~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                          ..+     ..+.+|+++++....   .+......-++..|+.|..   ++.=-..+.+.+|+...-+... -.-|.
T Consensus        93 ~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~~  165 (566)
T KOG2315|consen   93 PWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLSV  165 (566)
T ss_pred             ccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeeec
Confidence                122     347899999954322   1222222226899999987   4433345679999987643322 12367


Q ss_pred             cceEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEe---cCCCCceEEEEEecCCCEEEEEe-cCC-----
Q 001358          486 APVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSANGRRLFSCG-TSK-----  551 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~dg~~l~~~~-~~~-----  551 (1092)
                      ..|+.+.+++.+.-..+++     .+.-+.+++|...........   ......-..+.|++-|.-|++.. .+-     
T Consensus       166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~  245 (566)
T KOG2315|consen  166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA  245 (566)
T ss_pred             cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence            7888888888765556654     355567999977632221111   11112234577888777544332 211     


Q ss_pred             --CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          552 --EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       552 --~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                        -++..+++.+.........+..    .++|.++.|+|++..+++  |-.-..+.|+|++ +..+..+..    ..-++
T Consensus       246 SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~  316 (566)
T KOG2315|consen  246 SYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNT  316 (566)
T ss_pred             cccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccc
Confidence              2456788888874444333332    489999999999987765  5577889999985 455555532    23478


Q ss_pred             EEEccCCCEEEEEeCC---CeEEEEECCCCCeeeec
Q 001358          628 ICFNKNGTLLAVIANE---NRIKILETPESNSVDAA  660 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~  660 (1092)
                      +-|+|.|++++.++.+   |.|.+||+.+.+.+..+
T Consensus       317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             eEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            9999999999998874   88999999886655444

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.53  E-value=6.6e-12  Score=131.11  Aligned_cols=282  Identities=13%  Similarity=0.101  Sum_probs=190.7

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .-++..+.|||.|+ +|++... ..|.+|.-..+..+..+                     ....|..+.|||.++||.+
T Consensus        32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~t   88 (561)
T COG5354          32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLVT   88 (561)
T ss_pred             CcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceeee
Confidence            34788999999998 5666544 56999998887655431                     2357999999999999999


Q ss_pred             EeCCC---------------EEEEEEccCCCCccceEEecccccc--ee-EEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          414 AYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       414 ~~~d~---------------~i~iwd~~~~~~~~~~~~l~~h~~~--v~-~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      -+..+               .+.+||..+|..+.   .+.+...+  .+ -+.|+-|.+  +++-. ....+.|+++ ++
T Consensus        89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~  161 (561)
T COG5354          89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD  161 (561)
T ss_pred             eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence            75443               38999999987655   44444444  55 678999988  33333 2346999997 44


Q ss_pred             cee-EEEecC-CcceEEEeecccCCccEEEE-----EecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          476 SRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       476 ~~~-~~~~~~-~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      ... ..+..- ...|....++|..++..|+.     ...++++++|.+.....+.........-..+.|.+.|++|++-.
T Consensus       162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~  241 (561)
T COG5354         162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV  241 (561)
T ss_pred             ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence            322 112111 24566777777766666554     45678899999886665554444333445678899999876543


Q ss_pred             cC-------CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceEEEEeCC
Q 001358          549 TS-------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       549 ~~-------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      ..       .-++..++++++....+.... ...   ++|...+|.|.++.+++.  -.+..+.++|++.. ....+...
T Consensus       242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~  316 (561)
T COG5354         242 MTHTKSNKSYFGESNLYLLRITERSIPVEK-DLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ  316 (561)
T ss_pred             EEeeecccceeccceEEEEeecccccceec-ccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc
Confidence            21       123466888888744332222 333   799999999999887664  47888999999765 44443322


Q ss_pred             CCCCCCceEEEccCCCEEEEEeCC---CeEEEEECCCC
Q 001358          620 GGLPENPRICFNKNGTLLAVIANE---NRIKILETPES  654 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~  654 (1092)
                      .    -+.+.|+|.++++++++-|   |.+.+|+....
T Consensus       317 ~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         317 K----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             c----cccccccCcccEEEEecCCccccceEEeccCCc
Confidence            2    3678999999999998765   67888876643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.5e-12  Score=146.73  Aligned_cols=238  Identities=16%  Similarity=0.125  Sum_probs=157.7

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC---CCEEEEEEccCCCCccc
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  433 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  433 (1092)
                      ..|.+||...+....                    +..+...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--  241 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--  241 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence            468899986554332                    4557788999999999999998864   347999999887532  


Q ss_pred             eEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cCCe
Q 001358          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK  510 (1092)
Q Consensus       434 ~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~  510 (1092)
                        .+..+.+...+.+|+|||+. ++++.+.++  .|++||+.+++.. .+..+.......+|  ++||+.|+..+ .+|.
T Consensus       242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~  315 (433)
T PRK04922        242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTW--APDGKSIYFTSDRGGR  315 (433)
T ss_pred             --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence              23344455668899999995 334555555  5999999888754 45555555556677  45777777665 4455


Q ss_pred             --EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       511 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                        |.++++.+++.. .+..........+|+|||++++..... .+...|++||+.+++......+     .......|+|
T Consensus       316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~-----~~~~~p~~sp  388 (433)
T PRK04922        316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPG-----SLDESPSFAP  388 (433)
T ss_pred             ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCC-----CCCCCceECC
Confidence              555566554432 222333344568999999999887642 2345799999988876532222     2334568999


Q ss_pred             CCCEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          589 AKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       589 ~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ||++++..+.   .+.+.+++... .....+..+.  ..+...+|+|
T Consensus       389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence            9999887664   34688888854 4444444332  2356667776

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.6e-12  Score=148.27  Aligned_cols=233  Identities=15%  Similarity=0.132  Sum_probs=153.0

Q ss_pred             ccCCCcceeEecccCCCCceEEeecCCCceEEEEEcC---cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC
Q 001358          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP  395 (1092)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h  395 (1092)
                      +.+......+.+..|...+.+.+|||||++ |+..+.   +..|.+||+.+++...                    +..+
T Consensus       188 i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~  246 (433)
T PRK04922        188 VADSDGYNPQTILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASF  246 (433)
T ss_pred             EECCCCCCceEeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccC
Confidence            344444555667777778999999999995 454443   3469999998886543                    2233


Q ss_pred             CCcEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-CCCc--EEE
Q 001358          396 GVSVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKV  469 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~--i~v  469 (1092)
                      .+...+++|||||+.|+.. +.++  .|++||+.+++..    .+..+.......+|+|||++  ++.++ .++.  |.+
T Consensus       247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~  320 (433)
T PRK04922        247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYR  320 (433)
T ss_pred             CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEE
Confidence            4455678999999988754 4444  6999999987632    34456556678899999994  55444 4444  677


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                      +|+.+++... +..+.......+|  ++||+.|+..+.++   .|.+||+.++... .+. +........|+|||++++.
T Consensus       321 ~dl~~g~~~~-lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~  395 (433)
T PRK04922        321 VAASGGSAER-LTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLY  395 (433)
T ss_pred             EECCCCCeEE-eecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEE
Confidence            7777776433 3223333445666  45777887665443   5899998776654 332 2223456789999999988


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      .+.. .+...|++++...+ ..+.+..+.   +.+...+|+|
T Consensus       396 ~s~~-~g~~~L~~~~~~g~-~~~~l~~~~---g~~~~p~wsp  432 (433)
T PRK04922        396 ATRE-GGRGVLAAVSTDGR-VRQRLVSAD---GEVREPAWSP  432 (433)
T ss_pred             EEec-CCceEEEEEECCCC-ceEEcccCC---CCCCCCccCC
Confidence            7754 34667999998544 444454433   4556666765

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.7e-12  Score=145.83  Aligned_cols=223  Identities=14%  Similarity=0.112  Sum_probs=146.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      +..+...+.+.+|||||+.||..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            44577889999999999999987643   469999999886432    3334455678999999995 334667787766


Q ss_pred             EEE--CCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CCeEEEEEcC--CCCceEEecCCCCceEEEEEecCCCE
Q 001358          469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       469 vwd--~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      ||.  ..++. ...+..+........|  ++||+.|+..+. +|...+|.++  .+.. ..+...........|+|||++
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKL  341 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCE
Confidence            665  44444 4555555555566677  457777765554 5667777654  3322 222222333446789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceEEEEeCCC
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ++..+..+ +...|++||..+++......+     .......|+||++.|+.++.++   .+.+.+. ++.....+..+.
T Consensus       342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~  414 (427)
T PRK02889        342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG  414 (427)
T ss_pred             EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence            99776432 245799999998876543322     2235678999999998876444   3555566 455555554332


Q ss_pred             CCCCCceEEEcc
Q 001358          621 GLPENPRICFNK  632 (1092)
Q Consensus       621 ~~~~v~~v~~s~  632 (1092)
                      +  .+...+|+|
T Consensus       415 g--~~~~p~wsp  424 (427)
T PRK02889        415 G--DVREPSWGP  424 (427)
T ss_pred             C--CCCCCccCC
Confidence            2  356677776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.4e-12  Score=146.29  Aligned_cols=234  Identities=20%  Similarity=0.197  Sum_probs=150.1

Q ss_pred             cCCCcceeEecccCCCCceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .+......+.+..+.+.+.+.+|||||+.++.+...+  ..|.+||+.+|+...                    +....+
T Consensus       181 ~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g  240 (427)
T PRK02889        181 SDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKG  240 (427)
T ss_pred             ECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCC
Confidence            3334444556667778999999999998644433222  459999999887543                    222345


Q ss_pred             cEEEEEECCCCCEEEE-EeCCCEEEEEE--ccCCCCccceEEecccccceeEEEeeCCCCcEEEE-EEeCCCcEEEEE--
Q 001358          398 SVNRVVWSPDGSLLGV-AYSKHIVQLYA--YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVI-TCGDDKTIKVWD--  471 (1092)
Q Consensus       398 ~V~~l~~spdg~~las-~~~d~~i~iwd--~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~-s~~~d~~i~vwd--  471 (1092)
                      .+.+.+|||||+.|+. .+.++...||.  +.++. .+   .+..+.+.+....|+|||+.  ++ ++..++...||.  
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~  314 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMP  314 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEE
Confidence            5678999999999875 56677666665  44443 22   34556666678899999995  44 333456666665  


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +.+++.. .+..+........|  ++||++|+..+.++   .|.+||+.++.......  ........|+|||+.|+..+
T Consensus       315 ~~~g~~~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        315 ASGGAAQ-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             CCCCceE-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEE
Confidence            4455432 22222222334556  55778888776654   59999998776543322  22346789999999999887


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1092)
                      ..+ +...+++.+. +|...+.+..+.   +.+...+|+|-
T Consensus       390 ~~~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~  425 (427)
T PRK02889        390 QQG-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGPF  425 (427)
T ss_pred             ecC-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence            643 3566777777 455555555444   55666777763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.50  E-value=3.2e-10  Score=125.01  Aligned_cols=210  Identities=14%  Similarity=0.208  Sum_probs=137.4

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE---e----------cCCCCCeEEEEEcCCCCCEEEEEeC-CC
Q 001358          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGMD-DS  866 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~~-dg  866 (1092)
                      ....++++|++++|+++.  +|.+.++++.. +.....   +          +.......++.++| +++++++... ..
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D  166 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD  166 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence            345678888888888886  58888888875 333222   1          11234678999999 8887776543 34


Q ss_pred             eEEEEEcCCce--e--eEeec-cccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcC--CCceeeeeeeecCCCCcCCCCC
Q 001358          867 TILIYNARSSE--V--ISKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS  938 (1092)
Q Consensus       867 ~v~iwd~~~~~--~--~~~l~-~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  938 (1092)
                      .|++|++....  .  ...+. ......+.++|+||++++.... .+++|.++++.  .+.......+............
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            89999997654  2  12222 2445688999999999886655 57889999998  5544444444443222211125


Q ss_pred             ceEEEEecCCCEEEEE--eCCcEEEEEcC--Ccee--eeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEC--CC
Q 001358          939 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1009 (1092)
Q Consensus       939 v~~l~~s~dg~~la~~--~d~~v~lwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~vwd~--~~ 1009 (1092)
                      ...++++|||++|.++  ..+.|.+|++.  ++..  +.. ..........++|+|||++|+++. .++.|.+|++  .+
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~-~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT-VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE-EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE-EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            7899999999999986  45689999993  3332  222 222244589999999999999887 4568999976  56


Q ss_pred             CceEEe
Q 001358         1010 LEVQCR 1015 (1092)
Q Consensus      1010 ~~~~~~ 1015 (1092)
                      |.+...
T Consensus       326 G~l~~~  331 (345)
T PF10282_consen  326 GKLTPV  331 (345)
T ss_dssp             TEEEEE
T ss_pred             CcEEEe
Confidence            666533

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.49  E-value=8.6e-11  Score=122.94  Aligned_cols=358  Identities=12%  Similarity=0.151  Sum_probs=227.1

Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001358          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1092)
                      .+|...+......+....-++..+++||.|++|++....     .|.+|+...+..+..+..     ..|..+.|+|.++
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k   84 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK   84 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence            345444444444455456688899999999999987643     399999887776555554     4699999999999


Q ss_pred             EEEEEeCCC---------------eEEEEECCCCceEEEEeCCCCCCCCc-eEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358          592 QILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       592 ~l~~~s~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      +|.+-+..+               .+.+||..+|..+..+.......... -+.|+.+.+++|-. ....+.|+++ ++.
T Consensus        85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n  162 (561)
T COG5354          85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDN  162 (561)
T ss_pred             eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCc
Confidence            999865333               49999999999999887664432233 68889888877655 3357888886 221


Q ss_pred             eee-eccc-ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccc
Q 001358          656 SVD-AAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1092)
Q Consensus       656 ~~~-~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  733 (1092)
                      ... .+.. ....                                                                   
T Consensus       163 ~~~~p~~~lr~~g-------------------------------------------------------------------  175 (561)
T COG5354         163 IEEHPFKNLRPVG-------------------------------------------------------------------  175 (561)
T ss_pred             cccCchhhccccc-------------------------------------------------------------------
Confidence            110 0000 0122                                                                   


Q ss_pred             cccEEEEEEecCCc--EEEE-----eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358          734 ANKISRLTYNNGGQ--AIFA-----LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~--~l~~-----~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~  806 (1092)
                         |....++|.|.  .|+.     .+..+++++|.++.++.                      +.+..+    ....-.
T Consensus       176 ---i~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~  226 (561)
T COG5354         176 ---ILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGV  226 (561)
T ss_pred             ---eeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe----------------------eeeeee----Eeeccc
Confidence               22333333221  1111     12345566666553321                      111111    011112


Q ss_pred             EEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEE--EeCCCeEEEEE
Q 001358          807 CFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYN  872 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd  872 (1092)
                      .+-|.+.|+++++--            +..++|+++..... .....-.++|...+|.| .++.+++  |..+-.+-++|
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~  304 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFD  304 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecc
Confidence            345556666554321            24588888874333 33335678999999999 5554444  35778999999


Q ss_pred             cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC---CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358          873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      ++.. ++..+  ...+=..+.|||.+++++.++-|   |.|-+||..+.-    .++....+.     ..+-+.|||||.
T Consensus       305 lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~q  372 (561)
T COG5354         305 LRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQ  372 (561)
T ss_pred             cccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCce
Confidence            9864 44333  33444568999999999998876   569999998743    233233332     346778999999


Q ss_pred             EEEEE-------eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358          950 RFLLV-------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       950 ~la~~-------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
                      ++.+.       .|+.+.|||+......         ..+.+.|.|.|++..+.+.+.
T Consensus       373 F~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         373 FYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             EEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence            98873       3678999998644332         356678999999888887765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=2e-12  Score=135.41  Aligned_cols=277  Identities=10%  Similarity=0.140  Sum_probs=184.3

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE-----CCCCCE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL  410 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-----spdg~~  410 (1092)
                      .+....++-.|++|..--+  ..+.+|+...+..+..             ++.+..+.+  ....|-+|     .|+|--
T Consensus       125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~d  187 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGLD  187 (636)
T ss_pred             ceeeccccCCCCEEEEecC--CeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCcc
Confidence            4455566666776544322  5688898886544321             112222222  23344444     456778


Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEec--ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      |..|-.-|.|++.|....+..+ .....  -....|+|+.|-|.+.. .++.+-.+|.++++|.+          +....
T Consensus       188 llIGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~  255 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA  255 (636)
T ss_pred             eEEeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence            8888888999999877632211 11111  12368999999998877 56667779999999851          11112


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      +.-++..-+++..+.....-+.      .+..++..+......|...+|+|||++|++.+.    |+.++|+|..+.+++
T Consensus       256 t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELL  325 (636)
T ss_pred             CCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHH
Confidence            2222222233333332211110      111334444445558899999999999999986    788999999999988


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc----------------
Q 001358          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK----------------  632 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----------------  632 (1092)
                      ..++..-   +...|++|+|||++|++|++|.-|.||.+..++.+..=.  +|.+.|..|+|.|                
T Consensus       326 g~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFDpytt~~ee~~~~~~~~~  400 (636)
T KOG2394|consen  326 GVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFDPYTTSTEEWNNFSGMDS  400 (636)
T ss_pred             HHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeecccccccccccccccccc
Confidence            8877776   789999999999999999999999999999988887755  4466889999883                


Q ss_pred             -------------------CC-------------CEEEEEeCCCeEEEEECCCCCe
Q 001358          633 -------------------NG-------------TLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       633 -------------------~~-------------~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                                         ++             -.+.+.+.|..+.+||+.....
T Consensus       401 ~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L  456 (636)
T KOG2394|consen  401 TFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL  456 (636)
T ss_pred             cccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence                               01             2466778899999999986643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=4.7e-12  Score=128.01  Aligned_cols=272  Identities=14%  Similarity=0.131  Sum_probs=194.6

Q ss_pred             CCCceEEeecCCCceEEEEE-cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVG-TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg-~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      .+.|+.++|--|++.=+..+ +.|..+.............    +||+..         ......+|..++.. | ..|+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~-d-g~Li  119 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA-D-GTLI  119 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc-C-CEEE
Confidence            45788888877765433333 3566677777666554432    233222         23345667666665 3 3566


Q ss_pred             EEeCCCEEEEEEccCCCCc-cceEEecccccceeEEEeeCCCCcEEEEEEeCC--CcEEEEECCCCceeEEEecC-----
Q 001358          413 VAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH-----  484 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~~-----  484 (1092)
                      +|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++||..  ..+.|||+++.+.+.+-+.-     
T Consensus       120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL  197 (412)
T ss_pred             EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence            7778899999999854311 111123333 45677777777665 67779988  88999999988665443221     


Q ss_pred             ----CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       485 ----~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                          .-+++++.|.+..+...|++++.-+.+++||.+.++. +..+.....+++++...|+|++++++..    .+.+..
T Consensus       198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~  273 (412)
T KOG3881|consen  198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK  273 (412)
T ss_pred             cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence                1245566776654478999999999999999987654 5577888889999999999999999865    556999


Q ss_pred             EeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +|.+++..... +.+..   +.+.++..+|..+++++++-|..+||+|+.+.+++...-...   ..+++.+.+
T Consensus       274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~  341 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRD  341 (412)
T ss_pred             ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecC
Confidence            99999998877 77777   899999999999999999999999999999977766554332   245555544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=7.2e-12  Score=143.26  Aligned_cols=233  Identities=15%  Similarity=0.101  Sum_probs=153.8

Q ss_pred             cCCCcceeEecccCCCCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .+......+.+..|...+.+.+|||||++++.+..  .+..|.+||+.+|+...                    +..+.+
T Consensus       187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g  246 (435)
T PRK05137        187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG  246 (435)
T ss_pred             ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence            34444555677788889999999999996444432  24689999999886543                    344566


Q ss_pred             cEEEEEECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-CC--CcEEEEE
Q 001358          398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWD  471 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~d--~~i~vwd  471 (1092)
                      .+.+.+|||||+.|+.. +.++  .|.+||+.+++..    .+..+.......+|+|||+.  ++..+ .+  ..|.+||
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN  320 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence            77889999999988754 4444  4788898887532    35556666788999999995  44444 33  3688889


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +.+++. +.+..+...+....|  ++||+.|+..+.+   ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus       321 ~~g~~~-~~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        321 ADGSNP-RRISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             CCCCCe-EEeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence            776654 344334445556667  4577788776543   35778887554432 2222 23467789999999998776


Q ss_pred             cCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      ......  ..++++|+..+.. +.+.. .   +.+...+|+|
T Consensus       396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp  432 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP  432 (435)
T ss_pred             ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence            533221  4688889876654 33332 2   3455566665

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=8e-10  Score=111.99  Aligned_cols=281  Identities=11%  Similarity=0.099  Sum_probs=186.0

Q ss_pred             ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC---CeeEEeeecCCccccCcccccccCCccc
Q 001358          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1092)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~  783 (1092)
                      +..|.+|+++.........   .........+-++++|+++.|.++..+   |.+.-|.++.                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------   73 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------   73 (346)
T ss_pred             CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence            4668888887433221111   112356677889999999999888765   5666666543                  


Q ss_pred             cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceeeEE--ecCCCCC----------eEE
Q 001358          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS  848 (1092)
Q Consensus       784 ~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~  848 (1092)
                        .+|.-........  ...+...++++++|++|+++.  .|.|.++-+.. |.....  ...|.+.          +..
T Consensus        74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence              3333222221111  233447899999999999997  48999999865 433221  2223333          788


Q ss_pred             EEEcCCCCCEEEEEeCC-CeEEEEEcCCceeeEeec---cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCC--Ccee
Q 001358          849 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ  921 (1092)
Q Consensus       849 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~--~~~~  921 (1092)
                      ..+.| ++++|++.+-. -.|.+|++..|+....-.   .-...-+.|+|+|++++.....+ +++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            89999 89888876532 379999999876432211   23456788999999999877664 89999999987  4544


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC--CcEEEEEcCC--ceee-eeeccCCCcCEEEEEEecCCCEEEEE
Q 001358          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTCL-KQWFPISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--~~v~lwd~~~--~~~~-~~~~~~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      ..+.+.++.....-..+...+.+++||++|.++..  +.|.+|.+..  ++.. ......+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            44455444443333356788999999999999744  4688887753  3321 12223345557889999999999998


Q ss_pred             eCCC-cEEEEECC--CCceE
Q 001358          997 FVDG-TLSIHEAS--NLEVQ 1013 (1092)
Q Consensus       997 s~Dg-~i~vwd~~--~~~~~ 1013 (1092)
                      ..++ .|.+|..+  +|++-
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         309 NQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEE
Confidence            8764 58888665  55544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.3e-10  Score=122.58  Aligned_cols=327  Identities=13%  Similarity=0.176  Sum_probs=200.6

Q ss_pred             ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----------CC
Q 001358          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD  599 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----------~d  599 (1092)
                      .-+-+.|||.|.||++-...|     |.+|--.+-..++.|..     ..|.-+.|||+.++|++-+           +.
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence            345689999999999987533     89998777666666653     4688999999999999955           22


Q ss_pred             CeEEEEECCCCceEEEEeCCCC-CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358          600 HVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                      ..++|||+.+|.....+..... ...-.-+.||.|++++|.... .+|.||+...-.++....                 
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-----------------  343 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-----------------  343 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----------------
Confidence            5799999999999988876322 223346789999999998877 478888766422111100                 


Q ss_pred             ccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCee
Q 001358          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  758 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i  758 (1092)
                                            +                               .-..|..+.|+|.+..|+.-...   
T Consensus       344 ----------------------l-------------------------------ki~gIr~FswsP~~~llAYwtpe---  367 (698)
T KOG2314|consen  344 ----------------------L-------------------------------KISGIRDFSWSPTSNLLAYWTPE---  367 (698)
T ss_pred             ----------------------c-------------------------------CCccccCcccCCCcceEEEEccc---
Confidence                                  0                               12234555666665433222111   


Q ss_pred             EEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE
Q 001358          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT  838 (1092)
Q Consensus       759 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~  838 (1092)
                                                  +..           ..                    .++.+..+.+++.+++
T Consensus       368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT  388 (698)
T ss_pred             ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence                                        100           00                    1122333333333333


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEE----------eCCCeEEEEEcCCcee-eEeeccccCCeEEEEEcCCCCEEEEEeC-
Q 001358          839 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG-  906 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg----------~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s~-  906 (1092)
                      -.-+.-.=..+-|-. .|.+|+.-          +.=..+.|+.+..... +..+. -...|...+|-|.|+.+++.+. 
T Consensus       389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence            222221112233433 44444431          1122466666665432 22322 5577889999999998887654 


Q ss_pred             --CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCCcEEEEEcCCceeeeeeccCCCcC
Q 001358          907 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVP  980 (1092)
Q Consensus       907 --Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~v~lwd~~~~~~~~~~~~~h~~~  980 (1092)
                        -.++.+|.+++.. .....+..+...     ....+.|||.|++++++    ..|.+..+|..-..+...-...| ..
T Consensus       467 ~~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~  539 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA  539 (698)
T ss_pred             ccccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence              3568999988522 222344444432     36789999999999873    46789999988544433323333 34


Q ss_pred             EEEEEEecCCCEEEEEeCC------CcEEEEECCC
Q 001358          981 ISQATFSCDCRMVFTSFVD------GTLSIHEASN 1009 (1092)
Q Consensus       981 v~~l~fs~dg~~l~t~s~D------g~i~vwd~~~ 1009 (1092)
                      .+.+.|.|.|+|++|+++-      ..-++|+...
T Consensus       540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             cccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            5678999999999999864      3456666653

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=3.2e-11  Score=127.59  Aligned_cols=284  Identities=16%  Similarity=0.184  Sum_probs=190.9

Q ss_pred             ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-cceEEEeecccCCccEEEEEecCCeEEEEEcC
Q 001358          439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD  517 (1092)
Q Consensus       439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~  517 (1092)
                      +|...-+.|..+|||++ ++++|...-.|++||+..-...  |..|. ..+..+.+. +.|-..++.-..|.+|.+... 
T Consensus        49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak-  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAK-  123 (703)
T ss_pred             CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhh-
Confidence            46777889999999997 7889999999999998765543  32332 223222221 223233444455666554311 


Q ss_pred             CCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe
Q 001358          518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  597 (1092)
Q Consensus       518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s  597 (1092)
                       ......... ...-..++++.-..-|++++..    ..|+-+++..|..+..+....   +.++++..++....|++|+
T Consensus       124 -~G~hy~~RI-P~~GRDm~y~~~scDly~~gsg----~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  124 -YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGSG----SEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT  194 (703)
T ss_pred             -cCeeeeeec-CcCCccccccCCCccEEEeecC----cceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence             111111111 1122345555444444444432    239999999999999988876   8999999999999999999


Q ss_pred             CCCeEEEEECCCCceEEEEeCCCC---------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeec-ccccccc
Q 001358          598 DDHVIKIWDMNKVQLLTTIDAGGG---------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNL  667 (1092)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v  667 (1092)
                      .+|.|..||.++...+.++....+         .+.|+++.|+.+|-.+++|+.+|.+.|||+...+++... .+..-++
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            999999999999887777654322         345899999999999999999999999999988666543 3344556


Q ss_pred             eeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCc
Q 001358          668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ  747 (1092)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~  747 (1092)
                      ..+.|.+.                     ++.-.+.......++|||-..+.+.....       ....+..+++-|++-
T Consensus       275 ~~l~~~~~---------------------~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  275 KKLDWQDT---------------------DQQNKVVSMDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG  326 (703)
T ss_pred             eeeccccc---------------------CCCceEEecchHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence            66666532                     22223333344779999977655443221       345588899999999


Q ss_pred             EEEEeecCCeeEEeeec
Q 001358          748 AIFALASNGVHLMWRWP  764 (1092)
Q Consensus       748 ~l~~~~~dg~i~lw~~~  764 (1092)
                      .++++-.++.+..|=++
T Consensus       327 m~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIP  343 (703)
T ss_pred             eEEEecCCCcceeEEcc
Confidence            88888888776665554

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.42  E-value=1.2e-09  Score=112.96  Aligned_cols=171  Identities=15%  Similarity=0.173  Sum_probs=133.0

Q ss_pred             CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeeEeeccccCCeEE
Q 001358          813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      +|.+++..+.|...|.+...+-.++.  ++.+.|.-..+.. +++-++.|..|| .+-|||..+++ +.++...-+.|.+
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence            78999999999988888766554443  4667788888888 777889999999 99999999876 4556667788999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC----CcEEEEEcCC
Q 001358          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE----THLAIYEAEE  966 (1092)
Q Consensus       892 l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d----~~v~lwd~~~  966 (1092)
                      +..++||+.++.+-....|.+.|++++..+.   +...+  .   +-|+.++|+|+++++|-+ .+    ..|++||+.+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~--~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSE--Y---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccc--c---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            9999999999999888899999999976322   22211  1   369999999999999986 33    4699999998


Q ss_pred             ceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      ++......  ..+.-.+-+|.|||++|..-+
T Consensus       479 ~Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTT--PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecC--CcccccCcccCCCCcEEEEEe
Confidence            88766532  233445568999999887655

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=2.7e-10  Score=121.03  Aligned_cols=333  Identities=14%  Similarity=0.165  Sum_probs=209.5

Q ss_pred             CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-----eC-----
Q 001358          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD-----  598 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----s~-----  598 (1092)
                      ..++...++|++|++++.+.     +..+.|++..++..+.+...     ..+..+.|+|.++++.+-     ..     
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~  103 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS  103 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence            34577889999999999886     44588999888864333332     358899999999988762     12     


Q ss_pred             CCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccc
Q 001358          599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1092)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  678 (1092)
                      .-.+.+|+++++.....+......  -.+..|++|..+.+- -..+.+.+|+..+-+.. ...-+...+..+.++|.+..
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~  179 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP  179 (566)
T ss_pred             CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence            235779999996655555443322  257888887764433 23478999998874222 23345666777777765322


Q ss_pred             ccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcc---ceecccCCccccccEEEEEEecCCcEEEEeecC
Q 001358          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---CQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1092)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  755 (1092)
                      .       .+++        ...-..+.-..+|+|.........   +..+      -...=..+.|++-|.-|+.....
T Consensus       180 ~-------~vAv--------yvPe~kGaPa~vri~~~~~~~~~~~~a~ksF------Fkadkvqm~WN~~gt~LLvLast  238 (566)
T KOG2315|consen  180 P-------FVAV--------YVPEKKGAPASVRIYKYPEEGQHQPVANKSF------FKADKVQMKWNKLGTALLVLAST  238 (566)
T ss_pred             c-------eEEE--------EccCCCCCCcEEEEeccccccccchhhhccc------cccceeEEEeccCCceEEEEEEE
Confidence            1       1111        001123444678888765221111   1111      11122345677766654433221


Q ss_pred             CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeC---CeEEEEEcCC
Q 001358          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMT  832 (1092)
Q Consensus       756 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sd---g~i~iwd~~~  832 (1092)
                            +++....+    --...++.+.+.. |. -....+.   ..++|.++.|+|+|+-++++.+   ..+.|||++ 
T Consensus       239 ------dVDktn~S----YYGEq~Lyll~t~-g~-s~~V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-  302 (566)
T KOG2315|consen  239 ------DVDKTNAS----YYGEQTLYLLATQ-GE-SVSVPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-  302 (566)
T ss_pred             ------eecCCCcc----ccccceEEEEEec-Cc-eEEEecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-
Confidence                  01110000    0111223333333 22 1222232   5789999999999998888763   779999986 


Q ss_pred             ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC---CeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC---
Q 001358          833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG---  906 (1092)
Q Consensus       833 ~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~---  906 (1092)
                      +..+..+  ..++=.++-|+| .|++|+.++-+   |.+.|||+.+.+++..+..-..  +-+.|+|||.+++|++.   
T Consensus       303 ~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPR  377 (566)
T KOG2315|consen  303 GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPR  377 (566)
T ss_pred             CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEecccc
Confidence            5555544  456678899999 88888887765   7999999999999998886443  45899999999999875   


Q ss_pred             ---CCcEEEEEcCC
Q 001358          907 ---DAQIFVWDVDG  917 (1092)
Q Consensus       907 ---Dg~i~iwd~~~  917 (1092)
                         |..++||++.+
T Consensus       378 lrvdNg~KiwhytG  391 (566)
T KOG2315|consen  378 LRVDNGIKIWHYTG  391 (566)
T ss_pred             EEecCCeEEEEecC
Confidence               67799999987

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.40  E-value=3e-09  Score=113.29  Aligned_cols=205  Identities=11%  Similarity=0.094  Sum_probs=131.2

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceee-E
Q 001358          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S  880 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~-~  880 (1092)
                      ..++++|||+++.+..   +..|.+.|+.+++.+..+.-.. ...-...+. +. ++ +.+.||......+.+ |+.. .
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence            3578889999888775   5789999999999988877533 222233332 22 22 233455444443332 2211 1


Q ss_pred             ---eeccccCCe-EEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc---C-CCCCceEEEEecCCCEE
Q 001358          881 ---KLEGHSKRV-TGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       881 ---~l~~h~~~V-~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~l~~s~dg~~l  951 (1092)
                         .+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+......+.......   . ..+...-+++++||+.+
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence               111100000 0014456 8888776666 99999998765444333333221110   0 01345569999999988


Q ss_pred             EEEe---C--------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEeec
Q 001358          952 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       952 a~~~---d--------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      .+..   .        +.|.++|..+++.+..+..+  ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8731   1        57999999999999987665  4899999999999 777665 57889999999999998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.39  E-value=4.3e-11  Score=118.67  Aligned_cols=155  Identities=12%  Similarity=0.185  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC-ceeeEeecc-ccCCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 001358          847 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV  912 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~s~--s~Dg~i~i  912 (1092)
                      ..+.|+| .|.+|++-..          -|...||.++. +..+..+.- ..++|.+++|+|+|+.+|..  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4577888 6666665433          13455555532 233444432 45679999999999987655  35679999


Q ss_pred             EEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcCCceeeeeeccCCCcCEEEEEEec
Q 001358          913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1092)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1092)
                      ||++..      .+.....     ..+..+.|||+|++|+++.    .|.+.+||+.+.+.+....  | ..++.++|||
T Consensus        88 yd~~~~------~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsP  153 (194)
T PF08662_consen   88 YDVKGK------KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSP  153 (194)
T ss_pred             EcCccc------EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcC
Confidence            999731      2222222     1467899999999999842    4679999999888887632  3 3578999999


Q ss_pred             CCCEEEEEeC------CCcEEEEECCCCceEEeec
Q 001358          989 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       989 dg~~l~t~s~------Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ||+++++++.      |+.++||+.. |+++.+..
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9999999875      7889999995 66665543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=1.1e-09  Score=116.65  Aligned_cols=269  Identities=14%  Similarity=0.140  Sum_probs=170.7

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC----------CCEEEEEEcc
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH  426 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~----------d~~i~iwd~~  426 (1092)
                      ++|.+.|..+++.+.....                  |.  ....+ +||||+.|+++..          +..|.+||..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            8899999999887764221                  11  11224 9999999988755          6789999999


Q ss_pred             CCCCccceEEecc--c---ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccE
Q 001358          427 GGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF  501 (1092)
Q Consensus       427 ~~~~~~~~~~l~~--h---~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~  501 (1092)
                      +.+.+..+. +..  +   ...-..++++|||+++++.--+.+..|-+.|+.+++.+.++....... -.   +.++.. 
T Consensus        86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy---~t~e~~-  159 (352)
T TIGR02658        86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IF---PTANDT-  159 (352)
T ss_pred             cCcEEeEEc-cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EE---EecCCc-
Confidence            987765332 111  1   122347899999995333333458999999999999999887532111 11   111211 


Q ss_pred             EEEEecCCeEEEEEcCCCCceE-----EecCCCCce-EEEEEec-CCCEEEEEecCCCCceeEEEEeCCCC-----eEEE
Q 001358          502 IFSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKR  569 (1092)
Q Consensus       502 l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~  569 (1092)
                      ...-+.||......++......     .+.....++ ..-.|++ +|+++....     ++.|++.|+...     ..+.
T Consensus       160 ~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~  234 (352)
T TIGR02658       160 FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIE  234 (352)
T ss_pred             cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceee
Confidence            2233455555544443322211     111100000 0114456 888887765     367999995433     3333


Q ss_pred             EEeecc----ccCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001358          570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  635 (1092)
Q Consensus       570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  635 (1092)
                      .+....    ...+...-++++++++++++..          ..+.|.++|..+++.+..+....   .+..++++||++
T Consensus       235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgk  311 (352)
T TIGR02658       235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAK  311 (352)
T ss_pred             eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCC
Confidence            322111    1123344599999999998843          22579999999999999988643   478999999999


Q ss_pred             -EEEEEe-CCCeEEEEECCCCCeeeec
Q 001358          636 -LLAVIA-NENRIKILETPESNSVDAA  660 (1092)
Q Consensus       636 -~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1092)
                       +|++.. .++.|.++|..+++.+..+
T Consensus       312 p~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       312 PLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eEEEEeCCCCCcEEEEECcCCeEEeee
Confidence             777666 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.2e-10  Score=131.41  Aligned_cols=237  Identities=11%  Similarity=0.037  Sum_probs=147.1

Q ss_pred             cceeEecccCCCCceEEeecCCCce--EEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~--llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      ....+.|..+...+..-+|||||+.  ++.+...+  ..|.+.++.+|+...                    +....+..
T Consensus       174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~  233 (428)
T PRK01029        174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQ  233 (428)
T ss_pred             CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCc
Confidence            3334556555567788899999975  22344444  358888988886554                    22234455


Q ss_pred             EEEEECCCCCEEEEEeC-----CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEE-EeCCCcEEEE--E
Q 001358          400 NRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--D  471 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~-----d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s-~~~d~~i~vw--d  471 (1092)
                      ...+|||||+.||..+.     +-.+.+|++.++..-.......++.+.....+|+|||+.  |+. ...++...+|  +
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~  311 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQ  311 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEE
Confidence            67899999999997653     223455777653211111112223334567899999995  443 3346655555  4


Q ss_pred             CCC-CceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +.. +.....+..+...+....|  ++||+.|+..+.+   ..|.+||+.+++...... ....+....|+|||+.|+..
T Consensus       312 ~~~~g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        312 IDPEGQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             CcccccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEE
Confidence            432 3334555555555666677  4577777766543   368999998876544332 23456778999999998876


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1092)
                      ... .+...|+++|+.+++......+ .   +.+...+|+|-.
T Consensus       389 ~~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~  426 (428)
T PRK01029        389 AGN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP  426 (428)
T ss_pred             ECC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence            543 3467799999988876554432 2   445667777753

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.38  E-value=6.3e-11  Score=117.71  Aligned_cols=340  Identities=14%  Similarity=0.182  Sum_probs=203.3

Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ..++.++|+.   +.++....-|..+-+++.+.|.+++||-- +.++.-..+.... ...+.++.+.++...|++|-.+|
T Consensus        15 ~ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ng   90 (404)
T KOG1409|consen   15 ELLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecc
Confidence            3456677777   77888888888899999999999999954 4454444443322 24588999999999999999999


Q ss_pred             eEEEEECCCC----CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccC
Q 001358          645 RIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  720 (1092)
Q Consensus       645 ~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  720 (1092)
                      ++.-+.+...    ...+....|...+..+-++-                      ....+++.+.|..+ .|.      
T Consensus        91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----------------------~~e~V~s~~~dk~~-~~h------  141 (404)
T KOG1409|consen   91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----------------------THEWVLSTGKDKQF-AWH------  141 (404)
T ss_pred             eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----------------------CceeEEEeccccce-EEE------
Confidence            9998876533    23333445555555554431                      12233333332211 010      


Q ss_pred             ccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCC
Q 001358          721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  800 (1092)
Q Consensus       721 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  800 (1092)
                                          .+ ..|.         .+--|.+..                                   
T Consensus       142 --------------------c~-e~~~---------~lg~Y~~~~-----------------------------------  156 (404)
T KOG1409|consen  142 --------------------CT-ESGN---------RLGGYNFET-----------------------------------  156 (404)
T ss_pred             --------------------ee-ccCC---------cccceEeec-----------------------------------
Confidence                                00 0000         000000000                                   


Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEE--EcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358          801 SQEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                         ...++.+.-.  +...|. .|.+.+-  .......+.++.+|.+.+++++|.+ ...+|.+|..|..+.+||+...+
T Consensus       157 ---~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~  230 (404)
T KOG1409|consen  157 ---PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRK  230 (404)
T ss_pred             ---cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCc
Confidence               0000000000  222222 2333322  2234567888999999999999999 88999999999999999998654


Q ss_pred             -eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec-----C--------------------CC
Q 001358          878 -VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT-----P--------------------DG  931 (1092)
Q Consensus       878 -~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-----~--------------------~~  931 (1092)
                       ....+.+|.+.|..+...+--+.|++++.||.|.+|+.+........-+..     .                    ..
T Consensus       231 g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h  310 (404)
T KOG1409|consen  231 GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH  310 (404)
T ss_pred             ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence             346778999999999998888999999999999999987643222111000     0                    00


Q ss_pred             Cc-CCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc-------eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001358          932 VM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1092)
Q Consensus       932 ~~-~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~-------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~ 1003 (1092)
                      +. ..+..+-..+-+....+...+.+-.+++-|.-..       ..+...-.. ...|+.+.+..+-.+|+|+|.|+.|+
T Consensus       311 ~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~  389 (404)
T KOG1409|consen  311 HCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIK  389 (404)
T ss_pred             hhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEE
Confidence            00 0000111111111222222244444555443211       112221111 45799999999889999999999999


Q ss_pred             EEECCCC
Q 001358         1004 IHEASNL 1010 (1092)
Q Consensus      1004 vwd~~~~ 1010 (1092)
                      |||+..-
T Consensus       390 iwd~~~v  396 (404)
T KOG1409|consen  390 IWDVRSV  396 (404)
T ss_pred             EEechhh
Confidence            9998753

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2.8e-10  Score=128.39  Aligned_cols=243  Identities=12%  Similarity=0.077  Sum_probs=151.6

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE---EEeCC--CEEEEEEccCCCCc
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDA  431 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~  431 (1092)
                      ..|.+.|.+.+....                    ++.....+.+-+|||||+.++   +...+  ..|.+.++.+|+..
T Consensus       165 ~~l~~~d~dG~~~~~--------------------lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~  224 (428)
T PRK01029        165 GELWSVDYDGQNLRP--------------------LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK  224 (428)
T ss_pred             ceEEEEcCCCCCceE--------------------cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce
Confidence            367777877665442                    444556677889999998633   33333  36888899887643


Q ss_pred             cceEEecccccceeEEEeeCCCCcEEEEEEeC----CCcEEEEECCCC---ceeEEEecCCcceEEEeecccCCccEEEE
Q 001358          432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFS  504 (1092)
Q Consensus       432 ~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s  504 (1092)
                      +    +....+.....+|||||+++ +++...    |..+.+|++.++   +..+...++.......+|  ++||+.|+.
T Consensus       225 ~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf  297 (428)
T PRK01029        225 K----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVF  297 (428)
T ss_pred             E----eecCCCCccceEECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEE
Confidence            2    33344455678999999953 333322    333455777653   333333233233455566  557777766


Q ss_pred             Ee-cCCeEEEEEc--CC-CCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001358          505 IS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  580 (1092)
Q Consensus       505 ~~-~dg~i~vwd~--~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  580 (1092)
                      .+ .+|...+|.+  +. ......+......+....|+|||+.|+..+.. .+...|++||+.+++......+ .   ..
T Consensus       298 ~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~  372 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---EN  372 (428)
T ss_pred             EECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CC
Confidence            55 5676566644  32 22233344444566788999999999887643 2356799999998876544332 2   35


Q ss_pred             eEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          581 VSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       581 v~~~~~~~~~~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      +....|+|||+.|+..+.   ...|+++|+.+++........   ..+...+|+|-.
T Consensus       373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~~  426 (428)
T PRK01029        373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAFP  426 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCCC
Confidence            677899999998876442   357889999887765544322   235667888743

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.36  E-value=4.8e-10  Score=118.34  Aligned_cols=334  Identities=13%  Similarity=0.180  Sum_probs=202.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----------C
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------K  465 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----------~  465 (1092)
                      -.-+.+.|||-|.||++--..| |.+|--++-..++   .+ .|.+ |..+.|||..+  +|||-+..           .
T Consensus       211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp~-Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHPG-VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCCC-ceeeecCCccc--eEEEecCCccccCcccCCCc
Confidence            3456799999999999998887 9999765544333   23 4665 89999999999  78887632           4


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      .++|||+.+|...+.|....                       +..-.|                  .-+.||.|+++++
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~-----------------------~~~~~W------------------P~frWS~DdKy~A  321 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIK-----------------------SPYLKW------------------PIFRWSHDDKYFA  321 (698)
T ss_pred             eEEEEEccccchhcceeccC-----------------------CCcccc------------------ceEEeccCCceeE
Confidence            57788888887776664211                       111112                  1257889999988


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCC
Q 001358          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ....     ..|.+++..+..++.   .....-..|....|+|.++.|+.-+..     ..+.+-.+.+++.+.+.....
T Consensus       322 rm~~-----~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn  393 (698)
T KOG2314|consen  322 RMTG-----NSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN  393 (698)
T ss_pred             Eecc-----ceEEEEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence            7753     348888876644332   222223678888999998777764321     245666666776666655432


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc
Q 001358          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1092)
                      -  .-..+-|-.+|.+|++--.-       ....+       ..+..                                 
T Consensus       394 V--sDckLhWQk~gdyLcvkvdR-------~tK~~-------~~g~f---------------------------------  424 (698)
T KOG2314|consen  394 V--SDCKLHWQKSGDYLCVKVDR-------HTKSK-------VKGQF---------------------------------  424 (698)
T ss_pred             e--eccEEEeccCCcEEEEEEEe-------ecccc-------ccceE---------------------------------
Confidence            1  12346677788888754221       00000       00000                                 


Q ss_pred             ceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC---CeeEEeeecCCccccCcccccc
Q 001358          701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTK  777 (1092)
Q Consensus       701 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~  777 (1092)
                             ..+.|+.+...+.      ......-...|-.++|-|.|..+++.+.+   .++.+|.+....          
T Consensus       425 -------~n~eIfrireKdI------pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~----------  481 (698)
T KOG2314|consen  425 -------SNLEIFRIREKDI------PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI----------  481 (698)
T ss_pred             -------eeEEEEEeeccCC------CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC----------
Confidence                   1122222221100      00001134567889999999988777654   456666554311          


Q ss_pred             cCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001358          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  853 (1092)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  853 (1092)
                                +...+...+    .......+.|+|.|++++.+.    .|.+.++|+.-..+..+-.......+.+.|.|
T Consensus       482 ----------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP  547 (698)
T KOG2314|consen  482 ----------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP  547 (698)
T ss_pred             ----------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC
Confidence                      000111111    234566889999999999885    47899999875344333333345678899999


Q ss_pred             CCCCEEEEEeCCC------eEEEEEcC
Q 001358          854 HDNNVIAIGMDDS------TILIYNAR  874 (1092)
Q Consensus       854 ~d~~~lasg~~dg------~v~iwd~~  874 (1092)
                       .|+|+++++...      --+||++.
T Consensus       548 -tGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  548 -TGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             -CCCEEEEeeehhhhccccceEEEEee
Confidence             899999988644      34555555

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=7.8e-09  Score=114.05  Aligned_cols=249  Identities=15%  Similarity=0.212  Sum_probs=160.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeC----CCEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          396 GVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~----d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ......++++|++++|.+...    ++.|..|++... ..+............-..++++|++++ ++++...+|.|.++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~-l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF-LYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE-EEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE-EEEEEccCCeEEEE
Confidence            356777999999999999866    568999998874 233333333323345668999999994 34444568999999


Q ss_pred             ECCC-CceeEE--EecC-----------CcceEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc-e---EEe-cCCCC
Q 001358          471 DAVT-GSRTYS--FEGH-----------GAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA-R---VDY-DAPGL  530 (1092)
Q Consensus       471 d~~~-~~~~~~--~~~~-----------~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-~---~~~-~~~~~  530 (1092)
                      ++.. |.....  ...|           .....++.+  +++++++++.. ....|.+|+++.... .   ..+ ...+.
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~  192 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS  192 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence            9987 443322  1111           223456666  55767776654 345799999987652 1   122 23455


Q ss_pred             ceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeE--EEEEeecc---ccCCceEEEEEcCCCCEEEEEe-CCCeE
Q 001358          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG-DDHVI  602 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s-~dg~i  602 (1092)
                      ..+.++|+|+++++++..+   ..+.|.+++..  ++..  +..+....   ........+.++||+++|+++. ..+.|
T Consensus       193 GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  193 GPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             SEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             CCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence            7889999999999988764   35567777776  5533  22222211   0112578899999999998865 67789


Q ss_pred             EEEECC--CCce--EEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001358          603 KIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETP  652 (1092)
Q Consensus       603 ~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~  652 (1092)
                      .+|++.  ++.+  +..+...+  .....++++|+|++|+++.. ++.|.+|++.
T Consensus       270 ~vf~~d~~~g~l~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  270 SVFDLDPATGTLTLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEECTTTTTEEEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEecCCCceEEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            999983  3443  33333322  23588999999999998875 6789999764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.8e-10  Score=132.19  Aligned_cols=229  Identities=13%  Similarity=0.093  Sum_probs=144.5

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ...+.+..+.+.+...+|||||++++.+...+  ..|.+||+.+|+...                    +....+.+...
T Consensus       189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~  248 (430)
T PRK00178        189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP  248 (430)
T ss_pred             CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence            34455666777899999999999655554333  368999999886543                    22233445578


Q ss_pred             EECCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCce
Q 001358          403 VWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSR  477 (1092)
Q Consensus       403 ~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~  477 (1092)
                      +|||||++|+.. +.++  .|.+||+.+++..    .+..+........|+|||+. ++++...++  .|.++|+.+++.
T Consensus       249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence            999999999854 3444  6888899887532    34455666777899999995 233333333  577888888775


Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEecC-C--eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      .+ +...........|  ++|++.++..+.+ +  .|.+||+.++........  .......|+|||+.++..+.. .+.
T Consensus       324 ~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g~  397 (430)
T PRK00178        324 ER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QGR  397 (430)
T ss_pred             EE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CCc
Confidence            43 2211222233455  4566777766543 3  477888887654332221  222356899999999887653 335


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      ..+++++...+ ..+.+....   +.+...+|+|
T Consensus       398 ~~l~~~~~~g~-~~~~l~~~~---g~~~~p~ws~  427 (430)
T PRK00178        398 GVLMLVSINGR-VRLPLPTAQ---GEVREPSWSP  427 (430)
T ss_pred             eEEEEEECCCC-ceEECcCCC---CCcCCCccCC
Confidence            67888887543 334444333   4555666665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.5e-10  Score=131.84  Aligned_cols=227  Identities=15%  Similarity=0.109  Sum_probs=141.1

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcC--cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+.+..+...+.+.+|||||++++.+...++  .|.+||+.+++....                    ....+.....+|
T Consensus       210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~w  269 (448)
T PRK04792        210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRF  269 (448)
T ss_pred             ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeE
Confidence            4556666778999999999996554443333  588899988865431                    112223446899


Q ss_pred             CCCCCEEEEE-eCCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeE
Q 001358          405 SPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTY  479 (1092)
Q Consensus       405 spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~  479 (1092)
                      ||||+.|+.. +.++  .|.+||+.+++..    .+..+.......+|+|||+. ++++...++  .|.++|+.+++...
T Consensus       270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~  344 (448)
T PRK04792        270 SPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR  344 (448)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE
Confidence            9999988764 4555  4888888876532    34455556778899999995 233333344  46677887776543


Q ss_pred             EEecCCcceEEEeecccCCccEEEEEec-CCe--EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358          480 SFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                       +..........+|  ++||++|+..+. ++.  |.++|+.++.... +... .......|+|||+.|+..... .+...
T Consensus       345 -Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~  418 (448)
T PRK04792        345 -LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQV  418 (448)
T ss_pred             -EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceE
Confidence             2222222334456  456667766554 444  4556766655433 2221 122345799999999877653 34567


Q ss_pred             EEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      +++++. +|...+.+....   +.+...+|+|
T Consensus       419 l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp  446 (448)
T PRK04792        419 LAAVSI-DGRFKARLPAGQ---GEVKSPAWSP  446 (448)
T ss_pred             EEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence            888887 455555565443   4566667776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=5.1e-10  Score=127.51  Aligned_cols=223  Identities=15%  Similarity=0.115  Sum_probs=141.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  466 (1092)
                      +..+...+.+.+|||||++|+..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            44567789999999999999987543   368999998875322    2222334457899999995 3344566664  


Q ss_pred             EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cCCe--EEEEEcCCCCceEEecCCCCceEEEEEecCCCE
Q 001358          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      |.+||+.+++.. .+..+.......+|+  +|++.|+..+ .++.  |.++|+.+++... +..........+|+|||++
T Consensus       288 Iy~~dl~tg~~~-~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        288 IYVVDIATKALT-RITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             EEEEECCCCCeE-ECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence            778898877643 444455555666775  4666666554 3444  5555666554332 2222233345789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCceEEEEeCCC
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--VIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg--~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ++..+.. .+...|.++|+.+++... +....    ......|+|+++.++..+. ++  .+++++. +|.....+..+.
T Consensus       364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~  436 (448)
T PRK04792        364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ  436 (448)
T ss_pred             EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence            9887653 234568889998887543 22211    1123479999999877553 33  3677786 455555555432


Q ss_pred             CCCCCceEEEcc
Q 001358          621 GLPENPRICFNK  632 (1092)
Q Consensus       621 ~~~~v~~v~~s~  632 (1092)
                        ..+...+|+|
T Consensus       437 --g~~~~p~Wsp  446 (448)
T PRK04792        437 --GEVKSPAWSP  446 (448)
T ss_pred             --CCcCCCccCC
Confidence              2356677776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=7.9e-10  Score=126.97  Aligned_cols=237  Identities=14%  Similarity=0.104  Sum_probs=150.4

Q ss_pred             cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccce
Q 001358          358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~  434 (1092)
                      .|.++|.+.+....                    +..+...+...+|||||+.|+..+.+   ..|.+||+.+++...  
T Consensus       180 ~l~~~d~~g~~~~~--------------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--  237 (430)
T PRK00178        180 TLQRSDYDGARAVT--------------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--  237 (430)
T ss_pred             EEEEECCCCCCceE--------------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--
Confidence            47788877654332                    44577789999999999999887643   469999999875322  


Q ss_pred             EEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe-cCC--
Q 001358          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDG--  509 (1092)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg--  509 (1092)
                        +....+.+...+|+|||+. ++++.+.++  .|.+||+.+++.. .+..+........|+  +|++.++..+ .+|  
T Consensus       238 --l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~  311 (430)
T PRK00178        238 --ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKP  311 (430)
T ss_pred             --ccCCCCCcCCeEECCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCc
Confidence              3333445567899999995 333454454  6888899887654 454455555556664  5666665554 344  


Q ss_pred             eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358          510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1092)
                      .|.++++.+++... +...........|+|||+.++...... +...|+++|+.+++....... .    ......|+|+
T Consensus       312 ~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spd  384 (430)
T PRK00178        312 QIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPN  384 (430)
T ss_pred             eEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCC
Confidence            46666776655432 222223334578999999998876432 345699999998875433222 1    1224589999


Q ss_pred             CCEEEEEeCC---CeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          590 KDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       590 ~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      |+.++..+.+   ..+++++... .....+..+.  ..+...+|+|
T Consensus       385 g~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~  427 (430)
T PRK00178        385 GTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP  427 (430)
T ss_pred             CCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence            9999876643   3467777753 3334444322  2355666765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=1.7e-10  Score=116.88  Aligned_cols=116  Identities=13%  Similarity=0.176  Sum_probs=102.9

Q ss_pred             CCeeEEEEecC--CCEEEEEe-CCeEEEEEcCCce-eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358          803 EAVPCFALSKN--DAYLFSAS-GGVISLYIVMTFK-TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       803 ~~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      -.++++.|-+.  ...+|++. -+.+++||...++ ++..+.-...+++++...| +++++++|..-|.+..||+++++.
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence            34567778777  77888887 5999999998764 5677777788999999999 999999999999999999999998


Q ss_pred             eEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358          879 ISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       879 ~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      ... +.+-.+.|+++..+|.+++||++|-|+.|||+|+++..
T Consensus       282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            877 88999999999999999999999999999999999844

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.32  E-value=1.6e-10  Score=114.58  Aligned_cols=164  Identities=18%  Similarity=0.321  Sum_probs=114.8

Q ss_pred             EEEEEECCCCCEEEEEeC----------CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358          399 VNRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      =..+.|+|+|++|++-..          -+...+|.++..........+. ..++|.+++|+|+|+.+.++.|..++.|.
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            345889999999887533          1245666664332222221222 34579999999999976666677788999


Q ss_pred             EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +||++ ++.+..+.  ...++.+.|+  |+|++|++++.+   |.|.+||.++.+.+....  ...+..++|+|||++++
T Consensus        87 lyd~~-~~~i~~~~--~~~~n~i~ws--P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG--TQPRNTISWS--PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLA  159 (194)
T ss_pred             EEcCc-ccEeEeec--CCCceEEEEC--CCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEE
Confidence            99986 66676664  5678888885  477899988754   679999999666655543  33578999999999999


Q ss_pred             EEecC--CCCceeEEEEeCCCCeEEEEE
Q 001358          546 SCGTS--KEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       546 ~~~~~--~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      ++...  ...++.+.||+.. |+.+...
T Consensus       160 ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEEeccceeccccEEEEEec-CeEeEec
Confidence            88753  2245668899874 5554443

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=8.9e-09  Score=104.57  Aligned_cols=252  Identities=13%  Similarity=0.179  Sum_probs=172.2

Q ss_pred             CCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCC--ceee--EEecCCCCCeEEEEEcCCCCCEEEEEeCC-CeEEEE
Q 001358          801 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDD-STILIY  871 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~d-g~v~iw  871 (1092)
                      ....++-++++|+++.|.++.    +|.|..|.+..  |+..  ........+-+.+++++ ++++|+++... |.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            566778899999999888874    36788887764  4432  22222233448899999 89898888754 699999


Q ss_pred             EcCC-ceee--EeeccccCC----------eEEEEEcCCCCEEEEEe--CCCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358          872 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       872 d~~~-~~~~--~~l~~h~~~----------V~~l~~spdg~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      .+.. |.+.  .....|.+.          +....|.|++++|++.+  .|+ |.+|+++.+............|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9965 4322  122236555          88899999999999875  455 9999999877555444444333     


Q ss_pred             CCceEEEEecCCCEEEEE--eCCcEEEEEcCCc--ee--eeee---ccC--CCcCEEEEEEecCCCEEEEEeC-CCcEEE
Q 001358          937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL--TC--LKQW---FPI--SSVPISQATFSCDCRMVFTSFV-DGTLSI 1004 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~--~~--~~~~---~~~--h~~~v~~l~fs~dg~~l~t~s~-Dg~i~v 1004 (1092)
                      ...+.++|+|++++..+.  -+++|.+|.....  +.  ++..   ...  -......+..++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            357899999999998774  5689999998763  21  1111   111  1556778999999999997753 246888


Q ss_pred             EECCCCce-EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-cEEEEecCCCCCcc
Q 001358         1005 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTW 1067 (1092)
Q Consensus      1005 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-~v~~w~~~~~~~~~ 1067 (1092)
                      +.+....- +....   +.+    .....|..+.++|. +++|+++..++ .|.+|.+....++.
T Consensus       271 f~V~~~~g~L~~~~---~~~----teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L  327 (346)
T COG2706         271 FSVDPDGGKLELVG---ITP----TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRL  327 (346)
T ss_pred             EEEcCCCCEEEEEE---Eec----cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceE
Confidence            88765422 22221   112    22355677899984 67777777664 79999998777654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=2.5e-10  Score=131.15  Aligned_cols=215  Identities=19%  Similarity=0.168  Sum_probs=140.4

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ...+.+..+...+...+|||||++++.+...+  ..|.+||+.+++...                    +..+...+.++
T Consensus       180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~  239 (417)
T TIGR02800       180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAP  239 (417)
T ss_pred             CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence            34455666776899999999999644443322  479999999886543                    22355567789


Q ss_pred             EECCCCCEEEEE-eCC--CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-CCC--cEEEEECCCCc
Q 001358          403 VWSPDGSLLGVA-YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTGS  476 (1092)
Q Consensus       403 ~~spdg~~las~-~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~d~--~i~vwd~~~~~  476 (1092)
                      +|+|||+.|+.. +.+  ..|++||+.++...    .+..+........|+|||++  |+..+ .++  .|.++|+.+++
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence            999999988754 333  35889999876432    34445555667899999994  44443 333  58888887776


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .. .+..+...+....|  ++++.+++.++.++   .|.+||+.+..... +... .......|+|||++|+.....+ +
T Consensus       314 ~~-~l~~~~~~~~~~~~--spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-~  387 (417)
T TIGR02800       314 VR-RLTFRGGYNASPSW--SPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-G  387 (417)
T ss_pred             EE-EeecCCCCccCeEE--CCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-C
Confidence            43 44445555666667  45677888887765   78888887744332 2222 2234568999999998877543 3


Q ss_pred             ceeEEEEeCCCCeEEEEEe
Q 001358          554 ESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~  572 (1092)
                      ...+++.+.. +.....+.
T Consensus       388 ~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       388 RGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             cEEEEEEECC-CceeeECC
Confidence            4566666643 44444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=5.5e-10  Score=128.37  Aligned_cols=210  Identities=15%  Similarity=0.075  Sum_probs=138.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--c
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T  466 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~  466 (1092)
                      +..+...+...+|||||++||.++.+   ..|++||+.+++..    .+..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            44567789999999999999988643   47999999987532    23345566778999999985 334444444  5


Q ss_pred             EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CC--eEEEEEcCCCCceEEecCCCCceEEEEEecCCCE
Q 001358          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      |++||+.++... .+..+........|+  +|++.|+..+. ++  .|.++++.+.+. ..+...........|+|+|++
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence            889998887643 344444444455664  47777766554 33  477777765543 333334456677899999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceEEEEe
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~  617 (1092)
                      ++...... +...|++||+.++.... +...    .......|+|++++|+..+.++   .+++.+. ++.....+.
T Consensus       336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~----~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~  405 (417)
T TIGR02800       336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDT----GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP  405 (417)
T ss_pred             EEEEEccC-CceEEEEEeCCCCCeEE-ccCC----CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence            99887533 35579999998865432 2221    1234558999999998876543   3555554 344444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.30  E-value=6.8e-10  Score=110.35  Aligned_cols=357  Identities=14%  Similarity=0.211  Sum_probs=211.9

Q ss_pred             ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-----eeEEEecCC------------cceEEEeecccCCccEEE
Q 001358          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF  503 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~~~~~l~  503 (1092)
                      ..-|.++.|..+|.  +|++|..+|.|.++.-+...     ....++.|.            ..|+.+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            45688999999999  89999999999999643322     223344443            357788888888888899


Q ss_pred             EEecCCeEEEEEcCCCCceEE-----ecCCCCceEEEEE---ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358          504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       504 s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      ..+.|.+|++|.+........     .......++++..   .+-...+.                   ..+.+.+..  
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN--  161 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN--  161 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence            999999999998876544331     1111112222211   11111111                   112222221  


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-eEEEEeCCCC-----CCCCceEEEcc-CCCEEEEEeCCCeEEE
Q 001358          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGG-----LPENPRICFNK-NGTLLAVIANENRIKI  648 (1092)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~-~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~~dg~i~i  648 (1092)
                      .|...|+++.++.|...++++. |=.|.+|+++--. ..........     ...|++..|+| ..++++-.+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            1247799999999998887764 6779999987432 2222221111     12377888999 4567788888899999


Q ss_pred             EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1092)
                      -|++....-...                                                 -+++..             
T Consensus       241 cDmR~~aLCd~h-------------------------------------------------sKlfEe-------------  258 (433)
T KOG1354|consen  241 CDMRQSALCDAH-------------------------------------------------SKLFEE-------------  258 (433)
T ss_pred             eechhhhhhcch-------------------------------------------------hhhhcc-------------
Confidence            998743211100                                                 001100             


Q ss_pred             CCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEE
Q 001358          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  808 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~  808 (1092)
                      |.            .|..+.                                          ...      +--..|..+
T Consensus       259 pe------------dp~~rs------------------------------------------ffs------eiIsSISDv  278 (433)
T KOG1354|consen  259 PE------------DPSSRS------------------------------------------FFS------EIISSISDV  278 (433)
T ss_pred             cc------------CCcchh------------------------------------------hHH------HHhhhhhce
Confidence            00            000000                                          000      123456778


Q ss_pred             EEecCCCEEEEEeCCeEEEEEcC-CceeeEEecCCC------------CCe---EEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358          809 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN  872 (1092)
Q Consensus       809 ~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1092)
                      .|+++|+|+++-+--+|++||+. ..+++.+++-|.            ..|   ..++|+- ++.+++||+....+++|+
T Consensus       279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence            89999999988877889999983 455555555443            122   4678888 788999999999999999


Q ss_pred             cCCceee-EeeccccCC--eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358          873 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       873 ~~~~~~~-~~l~~h~~~--V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      +..|... .++......  ...+   ..-+.+.+++......+|-..            ..    ....+...+|+|...
T Consensus       358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ld----f~kkilh~aWhp~en  418 (433)
T KOG1354|consen  358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LD----FRKKILHTAWHPKEN  418 (433)
T ss_pred             CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hh----hhhHHHhhccCCccc
Confidence            7766432 333322221  1111   112334444443332222110            00    001367789999999


Q ss_pred             EEEEEeCCcEEEEE
Q 001358          950 RFLLVHETHLAIYE  963 (1092)
Q Consensus       950 ~la~~~d~~v~lwd  963 (1092)
                      .+|++.-+.+++|.
T Consensus       419 ~ia~aatnnlyif~  432 (433)
T KOG1354|consen  419 SIAVAATNNLYIFQ  432 (433)
T ss_pred             eeeeeecCceEEec
Confidence            99998777787763

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.28  E-value=2.4e-10  Score=113.50  Aligned_cols=265  Identities=12%  Similarity=0.181  Sum_probs=174.7

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecc-cccceeEEeeecCCCCcEEEEEECCCCC--E
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG-ACSMLFKTALVRDPGVSVNRVVWSPDGS--L  410 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~-~~~~~~~~~~l~~h~~~V~~l~~spdg~--~  410 (1092)
                      .+-|.+|.|..+|. +||+|..+|.|.++.-+.... .  ++..+-.. .....|....--.-...|..+.|.+++.  .
T Consensus        25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~-~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~  100 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYK-G--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAE  100 (433)
T ss_pred             hcceeeEEeecccc-eEeecCCCCeEEEeecccccc-c--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccE
Confidence            56899999999999 699999999999997544321 0  11111000 0001111100111246789999999764  4


Q ss_pred             EEEEeCCCEEEEEEccCCCCcc------------------c--------------eEE-ecccccceeEEEeeCCCCcEE
Q 001358          411 LGVAYSKHIVQLYAYHGGSDAR------------------Q--------------QLE-IDAHVGNVNDLAFSAPCKQIS  457 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~------------------~--------------~~~-l~~h~~~v~~~~~s~d~~~l~  457 (1092)
                      ++..+.|.+|++|.+.......                  .              ... -.+|+.-|.++.++.|+.  .
T Consensus       101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E--t  178 (433)
T KOG1354|consen  101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE--T  178 (433)
T ss_pred             EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc--e
Confidence            5666789999999986432111                  0              001 135788899999999998  5


Q ss_pred             EEEEeCCCcEEEEECCCCcee---EEEec-----CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc------eE
Q 001358          458 VITCGDDKTIKVWDAVTGSRT---YSFEG-----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA------RV  523 (1092)
Q Consensus       458 l~s~~~d~~i~vwd~~~~~~~---~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~------~~  523 (1092)
                      ++++. |=.|.+|+++--..-   ..++.     -...|++..|+|... ..++-.+..|+|++.|++....      ..
T Consensus       179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            66654 788999998743221   22222     234677888888644 5788888999999999984321      11


Q ss_pred             EecC----------CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC-CCCeEEEEEeeccc---------cCCce--
Q 001358          524 DYDA----------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAIKRTYQGLQL---------QHNSV--  581 (1092)
Q Consensus       524 ~~~~----------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~~~~~~~~~~---------~~~~v--  581 (1092)
                      ....          .-..|..+.|+++|+++++-.     -.+|.+||+ ...+.+.+++.|..         ..+.|  
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd  331 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD  331 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence            1111          112578899999999999853     456999999 45667777776652         12222  


Q ss_pred             -EEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358          582 -SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       582 -~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                       ..++|+.++.++++|+....+++++...|.
T Consensus       332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence             357899999999999999999999966543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=5.5e-11  Score=118.14  Aligned_cols=357  Identities=14%  Similarity=0.139  Sum_probs=226.6

Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      .++.++||.+.++.....+..+  -+++.+.|.++|+|--+...+..  .......+++++.+.++.+.|+++-.    .
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n   89 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N   89 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence            4567789999998887766554  59999999999999654433322  22334567899999999999998875    4


Q ss_pred             eeEEEEeC----CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          555 SFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       555 ~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      +.+.-+..    +.....+.+..|.   ..+..+-|+-...++++.+.|..+.---.+.+..+........   ..++.+
T Consensus        90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~  163 (404)
T KOG1409|consen   90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF  163 (404)
T ss_pred             ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence            45666544    3445556666666   8899999999899999999988775444455554433222111   111222


Q ss_pred             ccCCCEEEEEeCCCeEEEEECC--CCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358          631 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                      .-.  +..+|...|.+.+..+.  .-..+..+.+|.+.+.++++.                      +....+.++..|.
T Consensus       164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~  219 (404)
T KOG1409|consen  164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH  219 (404)
T ss_pred             eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence            211  55666667777766544  346788899999999999997                      5677889999999


Q ss_pred             ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccc-----cCCccc
Q 001358          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK-----VPPRLY  783 (1092)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~-----~~~~~~  783 (1092)
                      .+.+||+........     ...+|...|..+...+--+.+++++.||.|.+|++........+.....     ..+..|
T Consensus       220 ~vi~wdigg~~g~~~-----el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw  294 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTAY-----ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW  294 (404)
T ss_pred             ceEEEeccCCcceee-----eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence            999999875443333     2345888999999888899999999999999999986654333322211     223333


Q ss_pred             cCCCCCceeeecCCCC--CC-CCCeeEEEEecCCCEEEEEeCCeEEEEEcC-------CceeeEEecCCCCCeEEEEEcC
Q 001358          784 QPRHGPQFMVNDTTDS--NS-QEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP  853 (1092)
Q Consensus       784 ~~~~~~~~~~~~l~~~--~~-~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s~  853 (1092)
                      +...--.....-+..+  .+ ...+...+-+....+...+.+-.+|+-|.-       +...+..+......|+++.+..
T Consensus       295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe  374 (404)
T KOG1409|consen  295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE  374 (404)
T ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence            3211000000000000  01 112222222222222233333334444421       1122333433445789999988


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCC
Q 001358          854 HDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       854 ~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                       .-.+|+|++.|..|+|||+..
T Consensus       375 -tlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  375 -TLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             -hccceeecCCceEEEEEechh
Confidence             677999999999999999874

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.21  E-value=2.3e-09  Score=115.13  Aligned_cols=194  Identities=12%  Similarity=0.179  Sum_probs=155.1

Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEee------C------------CCCcEEEEEEeCCCc
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT  466 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s------~------------d~~~l~l~s~~~d~~  466 (1092)
                      .|.+.|+|....||.++|||...++..........-++..++..|.      |            .+.+..++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            4567899999999999999999987554332222234444555552      1            123337888999999


Q ss_pred             EEEEECCCCceeEEEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358          467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1092)
                      |.+++...|+....+.  .|.+.|+++.++.  +-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999999999988885  6899999987643  44689999999999999999988888888888899999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-----CCEEEEE-eCCCeEEEEECCC
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILAA-GDDHVIKIWDMNK  609 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-s~dg~i~iwd~~~  609 (1092)
                      ++++.      .|.+||+++++.+..|.||.   ++|.++.|..+     |.+++++ ..+..+.+|-...
T Consensus       160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            98854      59999999999999999999   99999999877     7777774 4556677886554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.18  E-value=3e-09  Score=114.27  Aligned_cols=188  Identities=14%  Similarity=0.229  Sum_probs=147.9

Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCceeeEEecCC---CCCeEEEEE------cC-------------CCCCEEEEEeCCCeE
Q 001358          812 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI  868 (1092)
Q Consensus       812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~d~~~lasg~~dg~v  868 (1092)
                      |.+.++|... ||.+++|+...++....+.+.   .+..++.+|      +|             .|...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456777775 799999999999887776542   223333333      11             155688889999999


Q ss_pred             EEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358          869 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  946 (1092)
                      .+|+...|+....+.  .|.+.|.++.++.+-..|-|++.|+.+..|+.....     .+........   .+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence            999999999888886  499999999999999999999999999999999843     3333333333   588999999


Q ss_pred             CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecC-----CCEEEE-EeCCCcEEEEECCC
Q 001358          947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASN 1009 (1092)
Q Consensus       947 dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~t-~s~Dg~i~vwd~~~ 1009 (1092)
                      ||+.|+++ .++|++||+++++.+.. +.||.++|.++.|-.+     |.++++ ...+..+.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99988875 46899999999999987 7899999999999887     666664 44456688887765

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.17  E-value=3.1e-08  Score=111.74  Aligned_cols=183  Identities=13%  Similarity=0.070  Sum_probs=111.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      .++.++.++.|..+|..+|+.+...............    ++..++.++.+|.+..+|..+++.......... +.+..
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p  141 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP  141 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence            5778888999999999999998776544332222222    446788889999999999998888776554332 22111


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce-----EEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      .. .+..++.+..    ++.++.||..+|+.+-.+....   ...     ......  +..++.+..+|.+..+|..+|+
T Consensus       142 ~v-~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~  211 (377)
T TIGR03300       142 LV-ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ  211 (377)
T ss_pred             EE-ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence            11 2345555443    5679999999999877665432   111     111111  2467888889999999999998


Q ss_pred             eEEEEeCCCCC--CCC---ceEEEcc--CCCEEEEEeCCCeEEEEECCCC
Q 001358          612 LLTTIDAGGGL--PEN---PRICFNK--NGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       612 ~~~~~~~~~~~--~~v---~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      .+.........  ..+   ..+.-+|  .+..+++++.+|.+..||..++
T Consensus       212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence            87654322110  000   0000011  2345555666666666666544

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.17  E-value=1.7e-10  Score=110.61  Aligned_cols=167  Identities=22%  Similarity=0.309  Sum_probs=123.1

Q ss_pred             chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCCC--cCCccccch
Q 001358            3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTK   71 (1092)
Q Consensus         3 ~~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~---------~~~~~~~i~~G~w~~~~~~l~~~~~--~~~~~~~~~   71 (1092)
                      ..++|+-|||+.||-..||.++|+.+.+|+|+..+         -...|.+|..|+-++|+..+.++-.  ++.+.   .
T Consensus        24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~  100 (228)
T KOG2659|consen   24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---E  100 (228)
T ss_pred             cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---h
Confidence            46789999999999999999999999999999761         4778999999999999999988732  33332   3


Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcc---cCcccccccccccCCChHHHHHHHHHH
Q 001358           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL---DDIRDHELLSKYYGDALSARKNMMLEL  148 (1092)
Q Consensus        72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~---~~~~~~~~~~~~~~~~~~~R~~l~~~l  148 (1092)
                      +.|.+.+|+++|++..+...+|++++|++|.|+...+++.++.|...|..   ...++.+...-|   ....|.++...+
T Consensus       101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~---~~s~R~kvA~~v  177 (228)
T KOG2659|consen  101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL---SQSLRQKVASEV  177 (228)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH---HHHHHHHHHHHH
Confidence            88999999999999999999999999999999988777776666665543   222221111101   134476777777


Q ss_pred             HhhcccCcccccccCCCCCccHHHHHHHHHHHHHH
Q 001358          149 KQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ  183 (1092)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q  183 (1092)
                      +..|-...-   ..     -..+|..||+.-...|
T Consensus       178 N~aiL~~~~---~~-----~~~~l~~llk~~~~~~  204 (228)
T KOG2659|consen  178 NSAILASQE---HE-----SEPKLPFLLKLISWAQ  204 (228)
T ss_pred             HHHHHHHhc---cc-----ccchHHHHHHHHHHHH
Confidence            766543221   01     2457888886655555

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.15  E-value=1.1e-07  Score=107.31  Aligned_cols=210  Identities=9%  Similarity=0.060  Sum_probs=125.8

Q ss_pred             eCCeEEEEEcCCceeeEEecCCCCCe-----EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC----C---
Q 001358          821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R---  888 (1092)
Q Consensus       821 sdg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----~---  888 (1092)
                      .++.+..||.++|+.+..+.......     .+..+.  + ..++.+..+|.+..+|..+|+.+.+......    .   
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            35677777777777666554322211     112222  3 3677788899999999999987755431100    0   


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcC
Q 001358          889 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE  965 (1092)
Q Consensus       889 V~~l~~sp--dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~  965 (1092)
                      +..+.-+|  .+..+..++.+|.+..||..+++..-...   ...       ....+  .++..+.+ ..++.+..+|..
T Consensus       230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~  297 (377)
T TIGR03300       230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR  297 (377)
T ss_pred             hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence            00010011  35577778889999999999886432111   111       11122  23445554 678999999999


Q ss_pred             CceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCE
Q 001358          966 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1045 (1092)
Q Consensus       966 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~ 1045 (1092)
                      +|+.+............+...  .+..|++++.+|.|+++|..+|+.+.++....        ..+... -++.   ++.
T Consensus       298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~~~  363 (377)
T TIGR03300       298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---GDG  363 (377)
T ss_pred             CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---CCE
Confidence            998765431111112222222  46688899999999999999999998876222        111110 1112   356


Q ss_pred             EEEEeCCCcEEEEe
Q 001358         1046 FAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1046 l~~~~~dg~v~~w~ 1059 (1092)
                      |++++.||.|+.|.
T Consensus       364 l~v~~~dG~l~~~~  377 (377)
T TIGR03300       364 LLVQTRDGDLYAFR  377 (377)
T ss_pred             EEEEeCCceEEEeC
Confidence            99999999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.05  E-value=4.5e-08  Score=109.65  Aligned_cols=205  Identities=14%  Similarity=0.023  Sum_probs=129.6

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcC---cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .+.+.... .+....|||||+++++..+.   +..|.++|+.+|+...                    +....+.+...+
T Consensus       181 ~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~  239 (419)
T PRK04043        181 QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSD  239 (419)
T ss_pred             eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeE
Confidence            34343333 77889999999864554333   3569999999887654                    223445667788


Q ss_pred             ECCCCCEEEEEeC---CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCcee
Q 001358          404 WSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRT  478 (1092)
Q Consensus       404 ~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~  478 (1092)
                      |||||+.|+....   +..|.++|+.+++. +   .+..+........|+|||+.+++++. ..+  .|.+.|+.+|+..
T Consensus       240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        240 VSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             ECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeE
Confidence            9999998876532   34688889887752 2   23334433445689999996444432 233  6888898888764


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecC---------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      +.... ...  ...|  ++||+.|+..+..         ..|.+.|++++.... +... .......|+|||+.++....
T Consensus       315 rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        315 QVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             eCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEc
Confidence            43321 111  1245  5677777766543         257777877765433 3322 23335889999999988765


Q ss_pred             CCCCceeEEEEeCCCC
Q 001358          550 SKEGESFLVEWNESEG  565 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~  565 (1092)
                      . .+...+.+.++...
T Consensus       388 ~-~~~~~L~~~~l~g~  402 (419)
T PRK04043        388 L-GNQSALGIIRLNYN  402 (419)
T ss_pred             c-CCcEEEEEEecCCC
Confidence            4 33556778887544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.04  E-value=1.7e-08  Score=98.67  Aligned_cols=251  Identities=15%  Similarity=0.098  Sum_probs=161.2

Q ss_pred             CceEEeec---CCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC---cEEEEEECCCCC
Q 001358          336 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS  409 (1092)
Q Consensus       336 ~V~~v~~s---pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~  409 (1092)
                      .+..+.|.   .+|...++-+-.+|.|.++.....+....+.           +     +..-.-   .--++.|++-|.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~-----------~-----ls~~ki~~~~~lslD~~~~~~  134 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR-----------G-----LSSKKISVVEALSLDISTSGT  134 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec-----------c-----cchhhhhheeeeEEEeeccCc
Confidence            56666665   3454456667777888888765433222100           0     111111   234678999999


Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC-CCceeEE-EecCCcc
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP  487 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~-~~~~~~~  487 (1092)
                      .++++-.+|.+.+-+..... +....++++|....+-+.|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            99999999988855444322 3333468899999999999877665 79999999999999998 4455543 5678888


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCC--EEEEEecCCCCceeEEEEeCCC-
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESE-  564 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~--~l~~~~~~~~~~~~i~iwd~~~-  564 (1092)
                      |.++.-++. .+.++++|+.|-.|++||.+.......-..-.+.|..+..+|.-.  .|++|-.++     ..+.+.+. 
T Consensus       213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~  286 (339)
T KOG0280|consen  213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK  286 (339)
T ss_pred             eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence            998876653 668999999999999999997666555555567899999998543  444443322     33444332 


Q ss_pred             -CeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEE-EEECCCC
Q 001358          565 -GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV  610 (1092)
Q Consensus       565 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~-iwd~~~~  610 (1092)
                       .+....+..+..|..-.+.-.|......+++++ .|+.++ +|-..++
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence             221122333332225555555544445677755 555544 6654443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=1.9e-07  Score=116.37  Aligned_cols=260  Identities=12%  Similarity=0.090  Sum_probs=162.0

Q ss_pred             EEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCE
Q 001358          738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  816 (1092)
Q Consensus       738 ~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~  816 (1092)
                      ..++++++ +..+++-..++.|.+|+.........+....      .....|.      +. ...-.....+++++++..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence            45778764 5566666667888888754321100000000      0000010      00 012234578999999887


Q ss_pred             EEEEe--CCeEEEEEcCCceeeEEecCC-----------------CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358          817 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       817 l~~~s--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      |.++.  ++.|+++|..++. +.++.+.                 -.....++++|+++.++++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            77665  4779999987764 3333210                 11336799999556677777788999999998775


Q ss_pred             eeEeecc---------c------cCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeee--------eeecC---C
Q 001358          878 VISKLEG---------H------SKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCR--------SLQTP---D  930 (1092)
Q Consensus       878 ~~~~l~~---------h------~~~V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~--------~~~~~---~  930 (1092)
                      .. .+.+         +      -.....|+++||++ ++++-+.++.|++||+.++......        .+...   .
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            42 1111         1      12356799999998 4555566789999999876532100        00000   0


Q ss_pred             CC--cCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccC------------CCcCEEEEEEecCCCEEEE
Q 001358          931 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT  995 (1092)
Q Consensus       931 ~~--~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t  995 (1092)
                      +.  .........++++++|.++++ ..+++|++||..++......-.+            .-.....+++++||+.+++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            00  000113568999999997777 57889999999887655322111            1235778999999999999


Q ss_pred             EeCCCcEEEEECCCCce
Q 001358          996 SFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       996 ~s~Dg~i~vwd~~~~~~ 1012 (1092)
                      -+.+++|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            98999999999999875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=3.7e-09  Score=111.12  Aligned_cols=244  Identities=14%  Similarity=0.218  Sum_probs=170.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC-CCcc---ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~~---~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      +.||+..|..++--.+.+-+++++.|++|++|.+... ..+.   ...++..|+.+|.++.|..+-+  .++++  ||.|
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence            7899999999988888899999999999999998742 2222   4557889999999999999988  56665  8899


Q ss_pred             EEEECCCCceeEEEec--CCcceEEEeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEec
Q 001358          468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA  539 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~  539 (1092)
                      .+||.--|+.+..+..  ..+.+..+...++-+..+++.| +...+|+++|.+..+-...+     .++..-+.+++..+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            9999988887754321  1122233332234355566665 78899999999887655443     33445688999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE-EECCCCceEEEEeC
Q 001358          540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA  618 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i-wd~~~~~~~~~~~~  618 (1092)
                      .|+.++++-.    +++|.+.|.++|+.+.......   -....++ .|..+.++....|.++.+ |..-+|....+...
T Consensus       887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence            9999998765    6779999999999877665443   2222222 345566777778888888 98877766555442


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          619 GGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      +..    ..--...-|.-++++.....+.+|.-
T Consensus       959 ppe----pahflqsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  959 PPE----PAHFLQSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             CCc----chhhhhccCceeEEeccCcEEEEEec
Confidence            211    00011123556777777777777753

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.97  E-value=3.1e-07  Score=114.58  Aligned_cols=255  Identities=11%  Similarity=0.093  Sum_probs=159.0

Q ss_pred             eEEEEecCCC-EEEEEe-CCeEEEEEcCCceeeEEecC--C------------CCCeEEEEEcCCCCCEEEEEe-CCCeE
Q 001358          806 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI  868 (1092)
Q Consensus       806 ~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v  868 (1092)
                      ..+++++++. ++++-+ ++.|+++|.. +..+..+.+  .            -.....+++++ ++..|+++. ..+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            4678887644 444433 5889999986 444443332  1            12357899998 666555554 45789


Q ss_pred             EEEEcCCceeeEeeccc-----------------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeee---ee
Q 001358          869 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ  927 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~  927 (1092)
                      +++|..++.. .++.+-                 -.....++|+| ++.++++.+.++.|++||..++......-   ..
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999887653 333210                 12346799999 56677777888999999998765321100   00


Q ss_pred             cCCCCc---CCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCceeeeee------------ccC--------CCcCEE
Q 001358          928 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQW------------FPI--------SSVPIS  982 (1092)
Q Consensus       928 ~~~~~~---~~~~~v~~l~~s~dg~~la~--~~d~~v~lwd~~~~~~~~~~------------~~~--------h~~~v~  982 (1092)
                      ...+..   ........++++|||+.|.+  ..+++|++||+.++......            +..        .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            000100   00124678999999986655  46689999999876532110            000        011346


Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccc-cCCCC--ccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358          983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus       983 ~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      .++|++||..+++-+.+++|++||..++........... ...+.  ...--.|..++++| ++..+++-+.++.|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            889999999999888999999999998876543321100 00000  00011356788888 578888888999999999


Q ss_pred             cCCCC
Q 001358         1060 PNEPG 1064 (1092)
Q Consensus      1060 ~~~~~ 1064 (1092)
                      +....
T Consensus       887 ~~~~~  891 (1057)
T PLN02919        887 LNKGE  891 (1057)
T ss_pred             CCCCc
Confidence            96543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.97  E-value=0.00023  Score=82.08  Aligned_cols=619  Identities=11%  Similarity=0.072  Sum_probs=301.2

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-C---
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D---  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-d---  407 (1092)
                      |..+-..|+.+-++|  +|.+||.-|.=.+-.+.+......+.          ..++.  + ..-++|..++.-. |   
T Consensus       304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gsy~----------~ilet--~-~NLgPI~Dm~Vvd~d~q~  368 (1096)
T KOG1897|consen  304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGSYV----------VILET--F-VNLGPIVDMCVVDLDRQG  368 (1096)
T ss_pred             CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCchh----------hhhhh--c-ccccceeeEEEEeccccC
Confidence            444456677777888  57888876665666665433221100          00000  0 1224677666543 2   


Q ss_pred             CCEEEEEe---CCCEEEEEEccCCCCccceEEecccccceeEEE--eeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +..+++|+   .||+++|..-.-+-.......+.| -..++.+.  +.+.-...++++-. + .-++..+...-......
T Consensus       369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~~~  445 (1096)
T KOG1897|consen  369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETEDP  445 (1096)
T ss_pred             CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEeccc
Confidence            34566654   578899887654422222224555 33466666  43332221333322 2 23344433221111122


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +.......+..+.- +++.|+-.. ...||+++-.  .....+..+. .++....+.+...++.++.    ...+...++
T Consensus       446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i  516 (1096)
T KOG1897|consen  446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI  516 (1096)
T ss_pred             cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence            22222333322211 112222211 2235555432  2223333333 3333344444445555543    233555565


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCC------CEEEEEeCCCeEEEE-ECCCCceEEEEeCCCC--CCCCceEEEccC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGG--LPENPRICFNKN  633 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~s~dg~i~iw-d~~~~~~~~~~~~~~~--~~~v~~v~~s~~  633 (1092)
                      ..+.+....+..  -...|.|+.++|-+      ++++.|..+..+.+. -..+...+........  ...|...++-.|
T Consensus       517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d  594 (1096)
T KOG1897|consen  517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD  594 (1096)
T ss_pred             eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence            555432222211  24679999998752      266777765554443 3344444433322211  122444555567


Q ss_pred             CCEEEEEeCCCeEEEEECC--CCCeeeecc--cccccceeeeec----------CCcccccccccCCceeecCCC-----
Q 001358          634 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLRKLSVN----------PISTVTGAGIANGSVSVNEDP-----  694 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-----  694 (1092)
                      ..+|.++..||.+.-|.+.  ++..-...+  -...++.--.|.          .+.+.+. =..++...|.+-.     
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~vi-Y~~n~kLv~spls~kev~  673 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVI-YSSNGKLVYSPLSLKEVN  673 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEE-EecCCcEEEeccchHHhh
Confidence            8899999999998876554  332111110  011111111111          1111111 1111112221100     


Q ss_pred             ------CCC-cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCc
Q 001358          695 ------KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1092)
Q Consensus       695 ------s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~  767 (1092)
                            ++. +..++++. .+.+++..++.-.....+.+  |   -......+++.+....+.+.+.......=      
T Consensus       674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------  741 (1096)
T KOG1897|consen  674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------  741 (1096)
T ss_pred             hhcccccccCCceEEEec-CCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh------
Confidence                  111 12222222 24455555443222222221  1   12234455665534333333322111100      


Q ss_pred             cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecC-CCEEEEEe-----------CCeEEEEEcCCcee
Q 001358          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT  835 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~  835 (1092)
                        ..+.......++++|..+-..+...++...+....+.++.|..| +.++++|.           .|.|.++....+..
T Consensus       742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence              00111122345667766665555544443333444555568877 77887774           26788888877444


Q ss_pred             eEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001358          836 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  913 (1092)
Q Consensus       836 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iw  913 (1092)
                      ++....+  .+.+.++..-  +|++||  +-...|++|+..+.+.+..-..|..++..+...-.|..++.|.--+.+.+-
T Consensus       820 L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  820 LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            4443322  2344444332  576766  445789999999987777777899999999999999999999988888777


Q ss_pred             EcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc-------------------eeeeeec
Q 001358          914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL-------------------TCLKQWF  974 (1092)
Q Consensus       914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~-------------------~~~~~~~  974 (1092)
                      .....+.......+...+     .+++++.+-.+..++.+-.++.+++....+.                   +.+..+ 
T Consensus       896 ~y~~~eg~f~evArD~~p-----~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f-  969 (1096)
T KOG1897|consen  896 QYKGDEGNFEEVARDYNP-----NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKF-  969 (1096)
T ss_pred             EEeccCCceEEeehhhCc-----cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeee-
Confidence            666544222112222211     3788999999988888877777666544321                   111111 


Q ss_pred             cCCCcCEEE--EEEecCCCEEEEEeCCCcEEEE
Q 001358          975 PISSVPISQ--ATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       975 ~~h~~~v~~--l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
                       .|..-|..  -..+|-+..+..|+.+|+|-+-
T Consensus       970 -~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  970 -RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             -eecceEeeccccccCCCCcEEEEEccceEEEE
Confidence             13333333  1223444457778889988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=2.7e-08  Score=110.15  Aligned_cols=506  Identities=12%  Similarity=0.109  Sum_probs=261.0

Q ss_pred             ceEEeecCCCceEEEEEcC----cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~----d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      -+-..|+|... ++|+++.    .|+|.|+- ++|++-+..+++                    -.+++++|+|..-.||
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vLa   75 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVLA   75 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHHh
Confidence            34557888887 7887764    47888885 667655432221                    2356699999999999


Q ss_pred             EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE--EecC--Ccce
Q 001358          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV  488 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~--~~~~--~~~v  488 (1092)
                      +|..-|.+.+|...+.+.-.   ....|..+|.-+.||++|.  .++|+..-|.|.+|....-..++.  +-.|  ...+
T Consensus        76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l  150 (1416)
T KOG3617|consen   76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL  150 (1416)
T ss_pred             hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence            99999999999988754222   3446999999999999999  899999999999998763222221  1122  2344


Q ss_pred             EEEeecccCCcc------EEEEEecCCeEE-EEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358          489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       489 ~~i~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      +-++|.-+.++.      ..+..+.+..+- .+++..........        -.-.|+|..++.++.    +|+|+-.|
T Consensus       151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd  218 (1416)
T KOG3617|consen  151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD  218 (1416)
T ss_pred             eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence            555554443321      122233333222 33332111100000        112367777777765    55677666


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCc---------------e-------------
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQ---------------L-------------  612 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~-~~~---------------~-------------  612 (1092)
                      - .|......+...    . ..+-|.+...-+++.-.+-.+.++-.. +|.               .             
T Consensus       219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL  292 (1416)
T KOG3617|consen  219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL  292 (1416)
T ss_pred             C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence            3 344333332211    1 112222222222222222222222110 100               0             


Q ss_pred             --EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe----------eeecccccccceeeeecCCccccc
Q 001358          613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS----------VDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       613 --~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                        ...+.. .....+.+++++..+..++.|...|.+.+|.-.....          +...+...+.|..+.|+|..+.++
T Consensus       293 r~~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a  371 (1416)
T KOG3617|consen  293 RKSEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA  371 (1416)
T ss_pred             cCCcchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence              000000 1123588999999999999999999999996543311          112223334455555555444333


Q ss_pred             ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  760 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l  760 (1092)
                      +.+....+.+....     .+                             ..|.....++.-+.++-.|..+.       
T Consensus       372 vn~~~~v~ll~E~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~-------  410 (1416)
T KOG3617|consen  372 VNTEEDVVLLGENS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT-------  410 (1416)
T ss_pred             hhhhhheeeeccCc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence            32222111110000     00                             00111111111111111111110       


Q ss_pred             eeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE--E
Q 001358          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL--T  838 (1092)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~--~  838 (1092)
                                                +|... .  +   ...-++..++.+.  ..+++..+.+|..|++.+.....  .
T Consensus       411 --------------------------sGv~~-~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~  456 (1416)
T KOG3617|consen  411 --------------------------SGVSQ-D--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQ  456 (1416)
T ss_pred             --------------------------cchhh-h--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHh
Confidence                                      11000 0  0   0122334444433  34666667888899986332111  1


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe--eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001358          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~  916 (1092)
                      ........+++++..  .++...++.+  |.++.+. |...+.  +..-.+.|.-+.++  |.+++.....+.++-+|+.
T Consensus       457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs  529 (1416)
T KOG3617|consen  457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS  529 (1416)
T ss_pred             hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence            111223344555553  4455555544  5554443 333222  22234455555554  7899988888888888888


Q ss_pred             CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE---EeC----CcEEEEEcCCceee
Q 001358          917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL  970 (1092)
Q Consensus       917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~---~~d----~~v~lwd~~~~~~~  970 (1092)
                      ..+...........+.....+.+..+..+..|.-+.+   ..+    .++..||.++++..
T Consensus       530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~  590 (1416)
T KOG3617|consen  530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ  590 (1416)
T ss_pred             hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence            7665544444444444444456788888877766544   222    47999999877643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.96  E-value=3.3e-07  Score=90.59  Aligned_cols=209  Identities=18%  Similarity=0.138  Sum_probs=139.9

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCc--eeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee
Q 001358          808 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1092)
Q Consensus       808 ~~~s~dg~~l~~~sdg~i~iwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1092)
                      ++.++||++||+.-|..|.|-..++.  ..+.+   .+.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            67889999999999999888876542  12222   222334558899999 999999999999999999986443 233


Q ss_pred             cc-------ccCCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358          883 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       883 ~~-------h~~~V~~l~~spdg------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      ..       -...|..|.|.+-.      ..|.....+|.++=|-+..+..........+.-.......|.++.+.|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            22       23567777776432      246667788888877764432111111111111111124799999999999


Q ss_pred             EEEEEe-----C-------CcEEEEEcCCceeeee--------------------ec--------cCCCcCEEEEEEecC
Q 001358          950 RFLLVH-----E-------THLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATFSCD  989 (1092)
Q Consensus       950 ~la~~~-----d-------~~v~lwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~fs~d  989 (1092)
                      +|+++.     +       --+.-|.+-++.+-..                    +.        ......|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            988841     1       1366676533211100                    00        113678999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          990 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       990 g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      |+.||+...+|.|.+|++++.++...+..
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            99999999999999999999999888763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.95  E-value=1.5e-07  Score=92.21  Aligned_cols=198  Identities=15%  Similarity=0.113  Sum_probs=135.3

Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeeE
Q 001358          805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~  880 (1092)
                      ..++.|++.+..+++.. +|.+.+-+......  ++..++|.-++....|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45778888888887775 58888666554443  447889999999999998788899999999999999998 344444


Q ss_pred             e-eccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC--EEEEEeC
Q 001358          881 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHE  956 (1092)
Q Consensus       881 ~-l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~--~la~~~d  956 (1092)
                      . .+-|...|.++.-+| ++.+++||+.|..|++||...-.    +++    ......+.|..+..+|.-.  .|+++.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl----~~~~v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPL----FKAKVGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----Ccc----ccCccccceEEEEecchhhhHHHHHHHh
Confidence            4 456999999998886 57899999999999999998511    111    1112225799999998643  4445544


Q ss_pred             CcEEEEEcCCcee----eeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEE-EEECCCC
Q 001358          957 THLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNL 1010 (1092)
Q Consensus       957 ~~v~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~-vwd~~~~ 1010 (1092)
                      +..+|.+...+..    .......|.+-...-.|..-..+|+||+ .|+.++ +|-..++
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            5556665543322    2222344555555555543345788865 466644 6755544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.93  E-value=5.5e-09  Score=124.85  Aligned_cols=200  Identities=16%  Similarity=0.252  Sum_probs=159.9

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      ..|-..|.++.=+|...+.++|+.||.|++|.+..+..+....+. |. ..|+.+.|+.+|.  .+..+..||.+.+|.+
T Consensus      2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence            345678888988999999999999999999999998877655443 33 8899999999999  6888888999999996


Q ss_pred             CCCceeEEEecCCcceEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      . .+.....+.|........|..    ..+++++   .++.+.+||...... -.....|.+.++++++.|..+.+++|+
T Consensus      2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred             C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence            6 666677788888888887754    3455553   567899998654332 223377889999999999999999998


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      .    +|.|++||++..++++.++.            +. ...++++|+..|.++||++.....+.++..
T Consensus      2356 r----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             C----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence            7    55599999998887666553            33 467899999999999999998888777654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=7.2e-09  Score=109.00  Aligned_cols=294  Identities=10%  Similarity=0.106  Sum_probs=186.4

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC-CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      -+..+.||+..|..++--.+.+ -+++++.|++|++|.+... ..+.+        +.|..+     +..|+.+|..+.|
T Consensus       727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~t--------saCQfT-----Y~aHkk~i~~igf  792 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGT--------SACQFT-----YQAHKKPIHDIGF  792 (1034)
T ss_pred             eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCcccc--------ceeeeE-----hhhccCcccceee
Confidence            3467789999999998777766 4789999999999999753 32321        122222     6679999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      -.|-++++++  ||-|++||.--|+.+.+...-..| +.+..+..-++ .+.++++.|+...+|+++|.+.++....++.
T Consensus       793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             eeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence            9999999876  677999999887766543222222 22333333333 3443555568899999999999887766643


Q ss_pred             -----CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          484 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       484 -----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                           ...-+.++++.+  .|..++.+-..|.|.+.|.+++..+..+.........++ .|..+.++....    +..+.
T Consensus       870 cna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsla  942 (1034)
T KOG4190|consen  870 CNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSLA  942 (1034)
T ss_pred             ccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----cceeE
Confidence                 345577887754  556899999999999999998877665554443333332 244455554433    44566


Q ss_pred             E-EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC----CceEEEEeCCCCCCCCceEEEccC
Q 001358          559 E-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       559 i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      + |....|......+...   .+..  ....-|..++++.....+.+|--..    ...+..+....-....++++.-|-
T Consensus       943 VnWhaldgimh~q~kppp---epah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL 1017 (1034)
T KOG4190|consen  943 VNWHALDGIMHLQDKPPP---EPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL 1017 (1034)
T ss_pred             eeehhcCCeeeeccCCCC---cchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc
Confidence            6 8766665544433222   1111  1112355677777767777774221    122222322222223567777776


Q ss_pred             CCEEEEEeCCCeEEE
Q 001358          634 GTLLAVIANENRIKI  648 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~i  648 (1092)
                      ..-+..|...|.|.+
T Consensus      1018 N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cchhhccCCCCceee
Confidence            666677777787765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.91  E-value=7.4e-09  Score=123.75  Aligned_cols=224  Identities=13%  Similarity=0.184  Sum_probs=166.4

Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA  486 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~  486 (1092)
                      ++..+....++...-|..+.+..     .++.+-..|.++.=+|...  +.+||+.||.|++|....+..+..++. ...
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred             cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence            34444444455555565554332     2334556788888888877  799999999999999999988877743 336


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-  565 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-  565 (1092)
                      .|+.+.|+  ..|..+..+..||.+.+|... .........|......+.|-.  ..+++.+.+.+ ++.+.+||..-. 
T Consensus      2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred             hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence            78888774  456688889999999999877 455556677777777777765  66777766555 778999997532 


Q ss_pred             --eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358          566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                        .++.  ..|.   +.++++++.|..+.+++|+.+|.|++||++..++.++++.           +. ...++++++..
T Consensus      2327 ~~s~v~--~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2327 MNSLVH--TCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred             ccceee--eecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcc
Confidence              2222  5555   8999999999999999999999999999998887766643           33 46789999999


Q ss_pred             CeEEEEECCCCCeeeecc
Q 001358          644 NRIKILETPESNSVDAAG  661 (1092)
Q Consensus       644 g~i~iw~~~~~~~~~~~~  661 (1092)
                      |.++||++.....+..+.
T Consensus      2390 g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cceEEEEccccchhhcCc
Confidence            999999999776555544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=3.1e-06  Score=95.76  Aligned_cols=220  Identities=10%  Similarity=0.058  Sum_probs=127.6

Q ss_pred             CCEEEEEeCCeEEEEEcCCceeeEEecCCCCC-----eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC-
Q 001358          814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-  887 (1092)
Q Consensus       814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-  887 (1092)
                      +..++...++.+..+|.++|+.+.........     ..+.+..  ++ .++.++.+|.+..+|..+|+.+........ 
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence            33333334677777888888777665432111     0111222  23 566688899999999999987665431100 


Q ss_pred             ------CeEEEEEcC--CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcE
Q 001358          888 ------RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL  959 (1092)
Q Consensus       888 ------~V~~l~~sp--dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v  959 (1092)
                            ....+.-+|  .+..+..++.+|.+..+|..+++..-...    .+.      ...+.. .++...+...++.+
T Consensus       238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~~------~~~~~~-~~~~vy~~~~~g~l  306 (394)
T PRK11138        238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YGS------VNDFAV-DGGRIYLVDQNDRV  306 (394)
T ss_pred             CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CCC------ccCcEE-ECCEEEEEcCCCeE
Confidence                  011111122  24566677789999999999886432111    111      111221 23444444678999


Q ss_pred             EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEEC
Q 001358          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
                      ..+|..+|+.+-...........+...  .+.+|+.++.||.+...|..+|+.+.+.....        ..+.+.-+ ..
T Consensus       307 ~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--------~~~~s~P~-~~  375 (394)
T PRK11138        307 YALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--------SGFLSEPV-VA  375 (394)
T ss_pred             EEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CcceeCCE-EE
Confidence            999999987654321111111222222  24567788999999999999999988775311        11111001 11


Q ss_pred             CCCCCEEEEEeCCCcEEEEecC
Q 001358         1040 PLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1040 p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                         +..|++++.||.|+.++.+
T Consensus       376 ---~~~l~v~t~~G~l~~~~~~  394 (394)
T PRK11138        376 ---DDKLLIQARDGTVYAITRP  394 (394)
T ss_pred             ---CCEEEEEeCCceEEEEeCC
Confidence               3589999999999998763

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=1.2e-06  Score=98.35  Aligned_cols=212  Identities=9%  Similarity=0.005  Sum_probs=131.3

Q ss_pred             eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCC---CeEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001358          824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      .|.+-|..... .+.+... +.+....|+| |++ .++..+.+   ..|+++|+.+++...... ..+......|||||+
T Consensus       170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            45555554333 3333333 3678899999 776 36654443   479999998887544333 455566788999998


Q ss_pred             EEEEE-eCC--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC----cEEEEEcCCceeeee
Q 001358          900 ILVSS-GGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ  972 (1092)
Q Consensus       900 ~l~s~-s~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~----~v~lwd~~~~~~~~~  972 (1092)
                      .|+.. +.+  ..|.++|+.+++..   .+....+      ......|+|||+.|+..++.    .|+++|+.+++..+.
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~---~LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLT---QITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEE---EcccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            77644 333  46888888776522   2322222      12345799999998875433    689999988877554


Q ss_pred             eccCCCcCEEEEEEecCCCEEEEEeCC---------CcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCC
Q 001358          973 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1043 (1092)
Q Consensus       973 ~~~~h~~~v~~l~fs~dg~~l~t~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~ 1043 (1092)
                      ...+.    ....|||||++|+..+..         ..|.+.|+.++... .+...     .   .   ....+|+| ||
T Consensus       317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG  379 (419)
T PRK04043        317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG  379 (419)
T ss_pred             ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence            33222    124899999999877654         26888898888653 23211     0   0   11367899 47


Q ss_pred             CEEEEEeCC-CcEEEEecCCCCC
Q 001358         1044 TQFAVGLTN-GEVYVIEPNEPGD 1065 (1092)
Q Consensus      1044 ~~l~~~~~d-g~v~~w~~~~~~~ 1065 (1092)
                      ..++..+.+ +.-.+|-+.-.+.
T Consensus       380 ~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        380 GSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CEEEEEEccCCcEEEEEEecCCC
Confidence            777666654 4444555554443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=2.1e-08  Score=109.51  Aligned_cols=212  Identities=16%  Similarity=0.252  Sum_probs=147.0

Q ss_pred             EEeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc
Q 001358          388 KTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  466 (1092)
Q Consensus       388 ~~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~  466 (1092)
                      ...++.||+..|+.+.|.|. -..||+++.|..+..||+.+...  .......-...-..++|+-...  .+...+..+.
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~  181 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGND  181 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCc
Confidence            34458899999999999995 56889999999999999987642  2223334445567889987666  3555666778


Q ss_pred             EEEEECCCC-ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEecCCCEE
Q 001358          467 IKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       467 i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l  544 (1092)
                      |++||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....++..-.+.|-|.-.
T Consensus       182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~  260 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY  260 (1081)
T ss_pred             eEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence            999999876 56788999999999998864433 36889999999999999865543322 2234466666677755543


Q ss_pred             EEEecCCCCceeEEE---------EeCCC-CeEEEEEeeccccCCceEEEEEcCC----------CCEEEEEeCCCeEEE
Q 001358          545 FSCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKI  604 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~i  604 (1092)
                      +.--..+  .+.+.+         |+..+ .+.+..|.||.   +.|....|-..          .-+|++-+.|.++++
T Consensus       261 ~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl  335 (1081)
T KOG0309|consen  261 CIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL  335 (1081)
T ss_pred             EeccccC--CeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence            3322211  223333         33332 35688899988   66655444322          236899999999999


Q ss_pred             EECCC
Q 001358          605 WDMNK  609 (1092)
Q Consensus       605 wd~~~  609 (1092)
                      |-+.+
T Consensus       336 WpI~~  340 (1081)
T KOG0309|consen  336 WPIDS  340 (1081)
T ss_pred             eeccH
Confidence            98754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.83  E-value=6e-06  Score=84.80  Aligned_cols=205  Identities=15%  Similarity=0.112  Sum_probs=141.2

Q ss_pred             eEEEEec-CCCEEEEEe-C-CeEEEEEcCCceeeEEecCCCCCe--EEEEEcCCCCCEEEEEeC-----CCeEEEEEcC-
Q 001358          806 PCFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR-  874 (1092)
Q Consensus       806 ~~~~~s~-dg~~l~~~s-d-g~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~-----dg~v~iwd~~-  874 (1092)
                      -.++.+| ++..++.+. - ....+||..+++....+....+.-  -.-+||+ ||++|++.-.     .|.|-|||.. 
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence            3577888 555666665 3 458899999999988877655433  3578999 8999988643     4799999999 


Q ss_pred             CceeeEeeccccCCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEcCCCceeeeeeeecCCCCcCCC
Q 001358          875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       875 ~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------------------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1092)
                      +.+.+..+..|.-.-..+.+.|||+.|+.+-.                  +-.+..-|..+|+......+......    
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~----  162 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ----  162 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc----
Confidence            67888889888777778999999988887521                  22355566666664443222111122    


Q ss_pred             CCceEEEEecCCCEEEEE-eCC-------cEEEEEcCCceeeeeecc------CCCcCEEEEEEecCCCEEE-EEeCCCc
Q 001358          937 PSETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVF-TSFVDGT 1001 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~-~d~-------~v~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~-t~s~Dg~ 1001 (1092)
                      .++..+++.++|..++.. ..+       -|.+++-..  .+..+..      .-...+-+|+++++|.+++ |+-.-++
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            259999999999987763 111       144444332  2221111      1267899999999998775 5556788


Q ss_pred             EEEEECCCCceEEeec
Q 001358         1002 LSIHEASNLEVQCRIL 1017 (1092)
Q Consensus      1002 i~vwd~~~~~~~~~~~ 1017 (1092)
                      +.+||..+|+++....
T Consensus       241 ~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVP  256 (305)
T ss_pred             EEEEECCCCCEeeccc
Confidence            9999999999986655

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.82  E-value=0.00077  Score=78.01  Aligned_cols=581  Identities=11%  Similarity=0.109  Sum_probs=289.3

Q ss_pred             EECCCCCEEEEEeCCCEEEEEEcc-CCCCccc---eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      ...++|...+.+..+|.+...-+. +++....   ....-+...-..|+...++|   .+..|+.-|.=++-.+.+..-.
T Consensus       264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~  340 (1096)
T KOG1897|consen  264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV  340 (1096)
T ss_pred             cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence            345678888888888877666555 4443322   12233555567788888887   4778887665555554432211


Q ss_pred             -------EEEecCCcceEEEeecccC--CccEEEEEe---cCCeEEEEEcCCCCceE---EecCCCCceEEEE-------
Q 001358          479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA-------  536 (1092)
Q Consensus       479 -------~~~~~~~~~v~~i~~~~~~--~~~~l~s~~---~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~-------  536 (1092)
                             .++. .-+||..++.....  .+..+++++   .||++|+..-.-+-...   .+.+ -..+..+.       
T Consensus       341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~  418 (1096)
T KOG1897|consen  341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY  418 (1096)
T ss_pred             Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence                   2332 34578887765432  233455543   57888887432111111   1111 01112221       


Q ss_pred             ----------------------------EecCCCEEEEEecCCCC-----ceeEEEEeCCCCeEEEEEeeccccCCceEE
Q 001358          537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV  583 (1092)
Q Consensus       537 ----------------------------~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  583 (1092)
                                                  |+.+.+.+++....++.     ...|++++..  ........    .+.++.
T Consensus       419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~----p~~~ti  492 (1096)
T KOG1897|consen  419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP----PGKITI  492 (1096)
T ss_pred             CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccC----CCceEE
Confidence                                        11122222222211110     0112333221  01111111    123333


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC--C----CEEEEEeCCCeEEEEE-CCCCCe
Q 001358          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILE-TPESNS  656 (1092)
Q Consensus       584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iw~-~~~~~~  656 (1092)
                      ...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-  +    +++++|..+..+.+.- .++...
T Consensus       493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~  571 (1096)
T KOG1897|consen  493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL  571 (1096)
T ss_pred             EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence            4444455577777777777777777665 333322233346888888873  2    3788887765555443 333322


Q ss_pred             eeecccccccc-eeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccC--ccceecccCCccc
Q 001358          657 VDAAGVLSDNL-RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP--SECQSLLLPSKVK  733 (1092)
Q Consensus       657 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~--~~~~~~~~~~~~~  733 (1092)
                      +.........+ .++-+.               .+    -.|..+|.++..||.+.-|-++....  .......    -.
T Consensus       572 ~~~~~l~~~~iPRSIl~~---------------~~----e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~----lG  628 (1096)
T KOG1897|consen  572 ITHEQLSGEIIPRSILLT---------------TF----EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT----LG  628 (1096)
T ss_pred             eeeeccCCCccchheeeE---------------Ee----eccceEEEEEcCCceEEEEEEEcccceEccccccc----cC
Confidence            22111111100 001110               11    23578888999999887666553321  1111111    12


Q ss_pred             cccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-
Q 001358          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-  812 (1092)
Q Consensus       734 ~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~-  812 (1092)
                      ..++.--.|+..++.-+.+.+|.-..+|.....                      .+.....++...|   +  +.|+. 
T Consensus       629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k----------------------Lv~spls~kev~~---~--c~f~s~  681 (1096)
T KOG1897|consen  629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK----------------------LVYSPLSLKEVNH---M--CPFNSD  681 (1096)
T ss_pred             CCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc----------------------EEEeccchHHhhh---h--cccccc
Confidence            344555566666555555555544444432111                      0011111110001   1  11222 


Q ss_pred             -CCCEEEEEeCCeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------------CeEEEEEcCC
Q 001358          813 -NDAYLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------------STILIYNARS  875 (1092)
Q Consensus       813 -dg~~l~~~sdg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------------g~v~iwd~~~  875 (1092)
                       -...++++..+.+++.-+..-+.  ++++. -......+++.+ ....+++.+.-              ..++++|-++
T Consensus       682 a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT  759 (1096)
T KOG1897|consen  682 AYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT  759 (1096)
T ss_pred             cCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence             23467777777777776654332  23322 223455666665 34444443321              1466777766


Q ss_pred             ceeeEeecc-c---cCCeEEEEEcCC-CCEEEEEeC----------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358          876 SEVISKLEG-H---SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       876 ~~~~~~l~~-h---~~~V~~l~~spd-g~~l~s~s~----------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      -+.+...+- .   .-.|.++.|..| +.+++.|..          .|.|.|+.+..+..  .+.+....-.    +.+ 
T Consensus       760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~--L~~v~e~~v~----Gav-  832 (1096)
T KOG1897|consen  760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS--LELVAETVVK----GAV-  832 (1096)
T ss_pred             eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc--eeeeeeeeec----cce-
Confidence            554433221 1   123455568877 677777643          36677777776221  1111111100    112 


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                       .+.---...++++-...|++|++.+.+.++. ...|..++..+...-.|..+++|.-=+++.+-.....+-........
T Consensus       833 -~aL~~fngkllA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD  910 (1096)
T KOG1897|consen  833 -YALVEFNGKLLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARD  910 (1096)
T ss_pred             -eehhhhCCeEEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehh
Confidence             2222223345556667899999998866665 55678899999999999999999887887766555444211111222


Q ss_pred             ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358         1021 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1021 ~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      +.|.       +..++..-  +...++-+..+|.+.+-.......
T Consensus       911 ~~p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~  946 (1096)
T KOG1897|consen  911 YNPN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDAT  946 (1096)
T ss_pred             hCcc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCC
Confidence            2222       22233332  356788888889888877764443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=5.5e-08  Score=99.80  Aligned_cols=165  Identities=21%  Similarity=0.171  Sum_probs=115.5

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-  414 (1092)
                      .++.+..+|.++ ++|++..++...++++......    .+.+|..         ..   ...-+++.|-.+......+ 
T Consensus        64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v---~~~~~ai~~~~~~~sv~v~d  126 (390)
T KOG3914|consen   64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CV---PKRPTAISFIREDTSVLVAD  126 (390)
T ss_pred             cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ec---ccCcceeeeeeccceEEEEe
Confidence            556667788887 7888888888777777654431    1122210         01   1223344454555555444 


Q ss_pred             --eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEE
Q 001358          415 --YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  491 (1092)
Q Consensus       415 --~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i  491 (1092)
                        +....+.+|....+.+.    .+-||-..++.++|+||++  .++++..|..|+|-....-..+..| -||...|..+
T Consensus       127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI  200 (390)
T ss_pred             ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence              44556677776654433    3558999999999999999  8999999999999877666555554 5799999999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  526 (1092)
                      +..   +++.|++++.|+++++||+.+++...++.
T Consensus       201 sl~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  201 SLT---DNYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eec---cCceeeecCCCCcEEEEecccCCcccccc
Confidence            974   33579999999999999999988775443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=6.9e-07  Score=99.39  Aligned_cols=339  Identities=14%  Similarity=0.112  Sum_probs=189.2

Q ss_pred             EEEEEECCCCCEEEEEe----CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          399 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       399 V~~l~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      -+-..|+|...++|+++    ..|.|.||- ++|+.-+.. +.   .-.+++++|+|..-  .|+.|-.-|.+.+|...+
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~---P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TY---PVHATSLCWHPEEF--VLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cc---ceehhhhccChHHH--HHhhccccceeEEEecCC
Confidence            34467999999999886    357788874 445533211 22   22366799999866  788888899999999877


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CC--Cc--eEEEEEecCCCEEE---
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PG--LG--CTRMAYSANGRRLF---  545 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~--~~--i~~~~~s~dg~~l~---  545 (1092)
                      .+.-.....|..+|..+.|+  ++|..++++..-|.+.+|.++..+.......  |.  ..  ..+...++++.-++   
T Consensus        91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la  168 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA  168 (1416)
T ss_pred             ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence            77666667899999999995  5778999999999999998875444332221  11  12  23444566643221   


Q ss_pred             EEecCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358          546 SCGTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       546 ~~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      -++-.++..  ....-|..++..  +...           -.-.|+|..++.++.+|+|+--|- +|+..........  
T Consensus       169 KaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--  232 (1416)
T KOG3617|consen  169 KAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--  232 (1416)
T ss_pred             hhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence            111111111  112222211111  0110           012468888999999999988774 4555555544322  


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECC-CCCeeeecccccccceeeeecCCcccccccccCCceeecCCC-CCCcccc
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-KEDVKPE  701 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l  701 (1092)
                        ..+-|.+...-+++...+-++.++-.. +|..        ..+..+..+                  +.. ...|. +
T Consensus       233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~--------ee~~~vk~s------------------gk~GgrqGg-i  283 (1416)
T KOG3617|consen  233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS--------EERCAVKVS------------------GKLGGRQGG-I  283 (1416)
T ss_pred             --HHHHHhcccceEEEEeeeceeeEEEecCCCch--------HHhhhhhhc------------------cccCCccCc-c
Confidence              335555545555555554444444332 2211        111111111                  000 00111 3


Q ss_pred             eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      +++...|.++-        .....     ......+.+++++..+..+.++...|.+.+|.-....+      ....++.
T Consensus       284 A~sEssGvLr~--------~eKyg-----~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f------~g~p~~d  344 (1416)
T KOG3617|consen  284 ACSESSGVLRK--------SEKYG-----LELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGF------QGDPTID  344 (1416)
T ss_pred             ccccccccccC--------Ccchh-----hhcCCceEEEEEeccceEEEecccCCcEEEeeecCccc------cCCCCcc
Confidence            33333231111        00111     11456789999999999999999999999997433222      1112344


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001358          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  820 (1092)
Q Consensus       782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~  820 (1092)
                      +|.+.+..          ...+.|+.+.|.|--..+++-
T Consensus       345 ~w~l~~~~----------e~~g~I~~i~Wg~~k~~~avn  373 (1416)
T KOG3617|consen  345 VWTLNGKR----------ESLGKISLIRWGPIKSTAAVN  373 (1416)
T ss_pred             eEEecCch----------hhccceEEEEeccccchhhhh
Confidence            55544332          245677788887755444443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.77  E-value=9.3e-06  Score=91.93  Aligned_cols=153  Identities=19%  Similarity=0.115  Sum_probs=93.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCc--ceE-----EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~-----~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  529 (1092)
                      .++.++.++.+.-+|.++|+.+.+......  ...     .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            467777788999999999998876643220  000     0000011123467788899999999999998887766543


Q ss_pred             CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      ....+... .++ .++.+..    ++.++.+|..+|+.+-.+.......  ....+-..  .+..++.++.+|.+..+|.
T Consensus       151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence            22211122 234 4444432    5679999999999887765432000  00001111  1346777888999999999


Q ss_pred             CCCceEEEEe
Q 001358          608 NKVQLLTTID  617 (1092)
Q Consensus       608 ~~~~~~~~~~  617 (1092)
                      .+|+.+....
T Consensus       223 ~~G~~~W~~~  232 (394)
T PRK11138        223 EQGQLIWQQR  232 (394)
T ss_pred             cCChhhheec
Confidence            9988766543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.77  E-value=7.6e-08  Score=98.82  Aligned_cols=160  Identities=9%  Similarity=0.083  Sum_probs=114.6

Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eeEeeccccCCeEEEEEcCCCCEEE---EEeCCCcEEEEEcCCCc
Q 001358          847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~---s~s~Dg~i~iwd~~~~~  919 (1092)
                      ..+..++ ++++||++..+....+++.....    ++..... ...-+++.|..+.....   .+++...+.+|+...+.
T Consensus        66 ~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~  143 (390)
T KOG3914|consen   66 ALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR  143 (390)
T ss_pred             cccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence            3445666 88899988888887777765433    2222221 12233344444443333   34555666777766422


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeC
Q 001358          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~  998 (1092)
                            ....-||..   .+..+++|||+++|+++ .|..|++-.+...-.+..+.-||..-|..++.-+ +..|+++|.
T Consensus       144 ------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sG  213 (390)
T KOG3914|consen  144 ------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSG  213 (390)
T ss_pred             ------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCC
Confidence                  233445655   79999999999999996 7889999999888888888899999999999865 456999999


Q ss_pred             CCcEEEEECCCCceEEeecc
Q 001358          999 DGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       999 Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      |++|++||+.+|+.+..+..
T Consensus       214 D~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             CCcEEEEecccCCcccccch
Confidence            99999999999999877653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.76  E-value=1.5e-05  Score=81.88  Aligned_cols=234  Identities=16%  Similarity=0.156  Sum_probs=153.1

Q ss_pred             ceEEeecCCCceEEEEEcCcCc-EEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358          337 PMSMDFHPVQHTLLLVGTNVGD-TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~-i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-  414 (1092)
                      ...++.+|+....++.+-.-|+ ..+||..+|+.+....-           -....+.||      -+||+||++|++. 
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a-----------~~gRHFyGH------g~fs~dG~~LytTE   69 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA-----------PPGRHFYGH------GVFSPDGRLLYTTE   69 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC-----------CCCCEEecC------EEEcCCCCEEEEec
Confidence            3458889966657888877665 78999999988764211           011114445      5899999999987 


Q ss_pred             ----eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe----------------CCCcEEEEECCC
Q 001358          415 ----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------------DDKTIKVWDAVT  474 (1092)
Q Consensus       415 ----~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~----------------~d~~i~vwd~~~  474 (1092)
                          ...|.|-|||...+  ++...++..|.-.-..+.+.|||+.|.++-|+                .+.++..-|..+
T Consensus        70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s  147 (305)
T PF07433_consen   70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS  147 (305)
T ss_pred             cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence                34578999999832  45555777776667788999999854444443                234566778888


Q ss_pred             CceeEE--E--ecCCcceEEEeecccCCccEEEEEecCCe-------EEEEEcCCCCceEEec-------CCCCceEEEE
Q 001358          475 GSRTYS--F--EGHGAPVYSLCPHAKENIHFIFSISVDGK-------IKAWLYDSLGARVDYD-------APGLGCTRMA  536 (1092)
Q Consensus       475 ~~~~~~--~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~~~~~-------~~~~~i~~~~  536 (1092)
                      |+.+..  +  .-|...|..+++..  +|..++..-..|.       +-+++  ..+....+.       .-.+-+-+|+
T Consensus       148 G~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa  223 (305)
T PF07433_consen  148 GALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIA  223 (305)
T ss_pred             CceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEE
Confidence            988766  4  33777888888844  4444443332222       23332  222222222       2234688999


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~  603 (1092)
                      +++++..+++.+.   ..+.+.+||..+++.+....-.     .+..++..+++  ++..+..|.+.
T Consensus       224 ~~~~g~~ia~tsP---rGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~--f~~ssG~G~~~  280 (305)
T PF07433_consen  224 ADRDGRLIAVTSP---RGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG--FLVSSGQGQLI  280 (305)
T ss_pred             EeCCCCEEEEECC---CCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc--eEEeCCCccEE
Confidence            9999998877764   2567999999999998777653     36677776666  44444445533

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.75  E-value=6.7e-06  Score=81.51  Aligned_cols=248  Identities=10%  Similarity=0.109  Sum_probs=135.0

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  417 (1092)
                      |.++.++||+ +||.- .|..|.|=.....-.....++              .+.+...-.=..++||||+.+||.+...
T Consensus         1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~   64 (282)
T PF15492_consen    1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST   64 (282)
T ss_pred             CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence            4578899998 66654 456777766554321111111              1123334455679999999999999999


Q ss_pred             CEEEEEEccCCCCcc--ceEEec-ccccceeEEEeeCCC-----CcEEEEEEeCCCcEEEEECCC-----CceeEEEec-
Q 001358          418 HIVQLYAYHGGSDAR--QQLEID-AHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAVT-----GSRTYSFEG-  483 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~--~~~~l~-~h~~~v~~~~~s~d~-----~~l~l~s~~~d~~i~vwd~~~-----~~~~~~~~~-  483 (1092)
                      |+|+++|+.+.....  ...... .-...|..+.|.+-.     .. .|+.-..+|.++=+-+..     .+..+++.. 
T Consensus        65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~  143 (282)
T PF15492_consen   65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS  143 (282)
T ss_pred             CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence            999999998744321  000011 123467777776542     11 345556677776665422     233444432 


Q ss_pred             --CCcceEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEe---cCCCEEEEEecCCC--Cce
Q 001358          484 --HGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYS---ANGRRLFSCGTSKE--GES  555 (1092)
Q Consensus       484 --~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s---~dg~~l~~~~~~~~--~~~  555 (1092)
                        +...|.++++++..  ++|+.|+. ...-..+           ......+++-.+-   |..+.+. ...+..  ...
T Consensus       144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~  209 (282)
T PF15492_consen  144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVT-SSEDDITASSK  209 (282)
T ss_pred             ccCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEcc-ccCcccccccc
Confidence              46689999997654  45555543 2210000           0011111111111   1111111 110000  000


Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      +..+|.+-+...   +.........|..|..+|||+.|++...+|.|.+|++.+-++......+
T Consensus       210 ~~~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  210 RRGLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ccceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            112233222211   1111222478999999999999999999999999999987776665443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.75  E-value=1.2e-06  Score=84.86  Aligned_cols=148  Identities=11%  Similarity=-0.035  Sum_probs=107.8

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      +.++++|+|++++++.+....|..|.+...............++.=.+..|+....  .++++..||++.|||++.....
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence            88999999999999999999999999886544332223444555566889998887  7999999999999999865443


Q ss_pred             E-----EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--------CceEEEEEecCCCEEE
Q 001358          479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF  545 (1092)
Q Consensus       479 ~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--------~~i~~~~~s~dg~~l~  545 (1092)
                      .     +-..|.+.+..+.|++.+--.+|+..-.-+.+++.|+++......+....        ..|..-.|+.++.-+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence            2     22458899999999875555677777777889999999877654333222        2355566666665555


Q ss_pred             EEe
Q 001358          546 SCG  548 (1092)
Q Consensus       546 ~~~  548 (1092)
                      +..
T Consensus       319 v~~  321 (344)
T KOG4532|consen  319 VKN  321 (344)
T ss_pred             ccc
Confidence            443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.73  E-value=1.6e-07  Score=92.32  Aligned_cols=261  Identities=14%  Similarity=0.198  Sum_probs=164.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCce-----eeEEecCCCC------------CeEEEEEcCC-CCCEEEE
Q 001358          801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPSP------------TATSLAFNPH-DNNVIAI  861 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~-----~~~~~~~~~~------------~i~~l~~s~~-d~~~las  861 (1092)
                      ....|+++.|...|.|+++|. +|+|.+|.-+...     ....+++|..            .|..+.|..+ +...+..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            567789999999999999998 6889998765332     2234555542            3566666542 2335556


Q ss_pred             EeCCCeEEEEEcCCcee-------------------------------------e----E-ee-ccccCCeEEEEEcCCC
Q 001358          862 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL  898 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~~-------------------------------------~----~-~l-~~h~~~V~~l~~spdg  898 (1092)
                      .+.|++|++|.+.....                                     +    . .. ..|.-.|.++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            77899999998753210                                     0    1 11 3577788899999999


Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCcEEEEEcCCcee------e
Q 001358          899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC------L  970 (1092)
Q Consensus       899 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~v~lwd~~~~~~------~  970 (1092)
                      ..++++ .|-.|.+|+++-......-+--.+.........|++..|+|....+..  ++.|.|++-|++....      +
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            888876 566799999875332111111111111111135788999998765554  6789999999873211      1


Q ss_pred             -ee--------eccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceEEeeccccc----cCCCCccCcccc-eE
Q 001358          971 -KQ--------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAY----LRPTTSCLHVYP-HA 1035 (1092)
Q Consensus       971 -~~--------~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~----~~~~~~~~~v~~-~~ 1035 (1092)
                       ..        ++.+-...|..+.||++|+++++-.. -+|++||+... ..+.++..+..    +..-+-.+.|+. ..
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFe  342 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFE  342 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEE
Confidence             00        11122667889999999999998654 58999999865 34444432111    111122344544 56


Q ss_pred             EEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358         1036 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      +.|+.+ ...+++|+..+...++-...++
T Consensus       343 isfSgd-~~~v~sgsy~NNfgiyp~~ssg  370 (460)
T COG5170         343 ISFSGD-DKHVLSGSYSNNFGIYPTDSSG  370 (460)
T ss_pred             EEecCC-cccccccccccceeeeccccCC
Confidence            778874 5778888887777777644433

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.72  E-value=1.3e-07  Score=103.61  Aligned_cols=294  Identities=13%  Similarity=0.160  Sum_probs=188.2

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-CccceEEecccc--cceeEEEeeCCCCcE-EEEEEeCCCcEEEEE
Q 001358          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWD  471 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~--~~v~~~~~s~d~~~l-~l~s~~~d~~i~vwd  471 (1092)
                      .+.+.++..+|.|+-+|.++.-| +.+-|+...- ..+    +-.|.  -.|-...|+|....- .+|+.+ .....+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecC-cchhhhhh
Confidence            46788899999999999999888 6677776432 222    11232  246778888865433 455444 45567898


Q ss_pred             CCCC---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEE
Q 001358          472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +...   ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... ....-......+.|+.....+.+.
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            7643   3345668999999999998753 3689999999999999999866544 333334455678887754444433


Q ss_pred             ecCCCCceeEEEEeCCCC-eEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          548 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      +.    ...|.+||.+.| ..+..+++|.   ..|+.+.|..- ...+.+.+.||+|+.||............... ..+
T Consensus       177 sh----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~pi  248 (1081)
T KOG0309|consen  177 SH----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPI  248 (1081)
T ss_pred             cc----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Ccc
Confidence            32    334999999865 5667777766   77888888653 35678899999999999875433222111111 235


Q ss_pred             ceEEEccCCCEEEE--EeCCCeEEE---------EECCC-CCeeeecccccccceeeeecCCcccccccccCCceeecCC
Q 001358          626 PRICFNKNGTLLAV--IANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~--~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1092)
                      ..-.+-|-|.-.++  .-.+..+.+         |+..+ .+++..+.||.+.|....|-......            ++
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d  316 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD  316 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence            55555553332222  111223333         33333 36788888999888766664332211            11


Q ss_pred             CCCCcccceeeccccccceecee
Q 001358          694 PKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      .....-.|++-+.|.++|+|.+.
T Consensus       317 ~d~rdfQLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  317 YDSRDFQLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             CCccceeEEEeecCCceEeeecc
Confidence            12233468899999999999875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.69  E-value=2.3e-05  Score=82.30  Aligned_cols=221  Identities=19%  Similarity=0.181  Sum_probs=141.3

Q ss_pred             EEEECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEee-CCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          401 RVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       401 ~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s-~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      +++|.+ +|.++++-...+.|..|+..++....    +... . ...+++. +++.   ++.+... .+.++|..+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence            467888 67777776678999999998874221    2211 2 6677777 6655   5555544 4566699998655


Q ss_pred             EEEec-----CCcceEEEeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358          479 YSFEG-----HGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       479 ~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      .....     .....+.+++  .++|.+.++....        |.|..++..  .........-.....++|+||++.|+
T Consensus        74 ~~~~~~~~~~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred             EEeeccCCCcccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC--CeEEEEecCcccccceEECCcchhee
Confidence            44432     3345677777  4567777766544        456666655  22332222334567899999999887


Q ss_pred             EEecCCCCceeEEEEeCCCCe--E--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358          546 SCGTSKEGESFLVEWNESEGA--I--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      .+..   ..+.|+.++.....  .  .+.+.......+....+++..+|+..++....+.|.+++.+ |+.+..+.... 
T Consensus       150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-  224 (246)
T PF08450_consen  150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV-  224 (246)
T ss_dssp             EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred             eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence            6543   25568888875322  2  22332222111347889999999888888889999999987 89988888763 


Q ss_pred             CCCCceEEEc-cCCCEEEEEe
Q 001358          622 LPENPRICFN-KNGTLLAVIA  641 (1092)
Q Consensus       622 ~~~v~~v~~s-~~~~~l~~~~  641 (1092)
                       ..+++++|. ++.+.|.+.+
T Consensus       225 -~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 -PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -SSEEEEEEESTTSSEEEEEE
T ss_pred             -CCEEEEEEECCCCCEEEEEe
Confidence             357899994 6766666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=1.6e-08  Score=112.52  Aligned_cols=217  Identities=15%  Similarity=0.236  Sum_probs=157.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|...-+|++||-+.+.|++|+..|.|+++++.+|....   ....|..+|+.+.=+.||..++..+....--..+|+
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            66789999999999999999999999999999999997665   567899999999999999953222223333578999


Q ss_pred             CCC-CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC----CCceEEEEEecCCCEEEE
Q 001358          472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       472 ~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~~  546 (1092)
                      +.+ +...++|.+-    .++.|+.+  .+.-+.|+......+||+++.....++-..    ...-....|+|+.+.++-
T Consensus      1174 ~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred             cccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence            764 5556666532    34455433  233445555567889999998876653221    123356789999988875


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCc
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                      -|         .+||.+..+.++.|....   .. ..-.|+|.|..++.-++     |||+++.+.++..+.-.    -.
T Consensus      1248 dG---------vLWDvR~~~aIh~FD~ft---~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld----qc 1305 (1516)
T KOG1832|consen 1248 DG---------VLWDVRIPEAIHRFDQFT---DY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD----QC 1305 (1516)
T ss_pred             Cc---------eeeeeccHHHHhhhhhhe---ec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc----ce
Confidence            32         579999888887776544   11 23359999999998775     99999999887765432    25


Q ss_pred             eEEEccCCCEEEE
Q 001358          627 RICFNKNGTLLAV  639 (1092)
Q Consensus       627 ~v~~s~~~~~l~~  639 (1092)
                      .+.|+..|..+..
T Consensus      1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred             EEEeccCccchhh
Confidence            6788887776543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.65  E-value=7.2e-06  Score=86.01  Aligned_cols=223  Identities=13%  Similarity=0.122  Sum_probs=139.0

Q ss_pred             CCeEEEEEcCCceeeEEecCC--CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCC
Q 001358          822 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      +|.|..||..+|+.+....-.  .....+.++.  ++..+++++.++.++.||..+|+.+.+... .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999998877531  1222222332  345777778999999999999999877764 22211111 22455


Q ss_pred             EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCC
Q 001358          900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS  978 (1092)
Q Consensus       900 ~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~  978 (1092)
                      .++.++.|+.|..+|..+++..-.......+...    .........++..++++ .++.|..+|..+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            6677778889999999998754431111111110    12233344447777775 589999999999998776543221


Q ss_pred             c---------CEEEEEEecCCCEEEEEeCCCc-EEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEE
Q 001358          979 V---------PISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1048 (1092)
Q Consensus       979 ~---------~v~~l~fs~dg~~l~t~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~ 1048 (1092)
                      .         .+..-....++ .++.++.++. +.+ |+.+|+.+.+..     ...     ....   ..+ ++..+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~~---~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYSL---PSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECEC---EEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccCC---cee-eCCEEEE
Confidence            1         12222233345 7777777886 555 999998663221     111     1110   222 3577888


Q ss_pred             EeCCCcEEEEecCCCCCccc
Q 001358         1049 GLTNGEVYVIEPNEPGDTWA 1068 (1092)
Q Consensus      1049 ~~~dg~v~~w~~~~~~~~~~ 1068 (1092)
                      ++.++.|..||+...+..|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            88999999999998887774

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.63  E-value=6.6e-05  Score=78.85  Aligned_cols=219  Identities=16%  Similarity=0.135  Sum_probs=143.2

Q ss_pred             EEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC-CCCCEEEEEeC
Q 001358          339 SMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS-PDGSLLGVAYS  416 (1092)
Q Consensus       339 ~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~las~~~  416 (1092)
                      +++|.+ +|. |+.+-...+.|..|+..++.....                    . . .....+++. ++|+++ ++..
T Consensus         4 gp~~d~~~g~-l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g~l~-v~~~   59 (246)
T PF08450_consen    4 GPVWDPRDGR-LYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDGRLY-VADS   59 (246)
T ss_dssp             EEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTSEEE-EEET
T ss_pred             ceEEECCCCE-EEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCCEEE-EEEc
Confidence            578888 555 788887889999999988765421                    1 1 126677777 665554 4445


Q ss_pred             CCEEEEEEccCCCCccceEEec--c-cccceeEEEeeCCCCcEEEEEEeCC--------CcEEEEECCCCceeEEEecCC
Q 001358          417 KHIVQLYAYHGGSDARQQLEID--A-HVGNVNDLAFSAPCKQISVITCGDD--------KTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~--~-h~~~v~~~~~s~d~~~l~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      .+ +.++|..+++.. ......  . .....+.+++.++|+  +.++....        |.|..++.. ++...... .-
T Consensus        60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            55 566699887533 222331  2 345788999999999  56665533        457777766 55443333 34


Q ss_pred             cceEEEeecccCCccEE-EEEecCCeEEEEEcCCCCc----eE---EecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          486 APVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGA----RV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ...+.++|++  +++.| ++-+..+.|..++++....    ..   .+....+....+++..+|+..++...    .+.|
T Consensus       134 ~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I  207 (246)
T PF08450_consen  134 GFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRI  207 (246)
T ss_dssp             SSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEE
T ss_pred             ccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEE
Confidence            5567888865  55555 5667788899999865433    11   12222234788999999987777553    5569


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEe
Q 001358          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAG  597 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s  597 (1092)
                      .++|.. |+.+..+....   ..+++++| .++.+.|++.+
T Consensus       208 ~~~~p~-G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELPV---PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETT-SCEEEEEE-SS---SSEEEEEEESTTSSEEEEEE
T ss_pred             EEECCC-ccEEEEEcCCC---CCEEEEEEECCCCCEEEEEe
Confidence            999988 88888887764   57899999 46767776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.62  E-value=2.9e-05  Score=80.78  Aligned_cols=232  Identities=14%  Similarity=0.145  Sum_probs=143.5

Q ss_pred             CccccCCCCCceeeecCCCC---CCCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001358          780 PRLYQPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  853 (1092)
Q Consensus       780 ~~~~~~~~~~~~~~~~l~~~---~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  853 (1092)
                      +.+||..+-.......++..   ........+++|.||+++.+..   .-.|.|.|+...+.+..+..+. ..   -.-|
T Consensus        69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~---~iyP  144 (342)
T PF06433_consen   69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CW---LIYP  144 (342)
T ss_dssp             EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EE---EEEE
T ss_pred             EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EE---EEEe
Confidence            34455555444444444431   0112334578999999999886   4779999999999988876432 11   1122


Q ss_pred             CCCCEEEEEeCCCeEEEEEcC-CceeeEe----eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001358          854 HDNNVIAIGMDDSTILIYNAR-SSEVISK----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ  927 (1092)
Q Consensus       854 ~d~~~lasg~~dg~v~iwd~~-~~~~~~~----l~~h~~~V-~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  927 (1092)
                      ..++-+.+-|.||++.-..+. .|+...+    |..-.+++ ..-+++.++..++..+..|.|+--|+............
T Consensus       145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~  224 (342)
T PF06433_consen  145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS  224 (342)
T ss_dssp             EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred             cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence            234567788999999999887 4554322    11122222 23445556666776889999999999887655544443


Q ss_pred             cCCCCc---CC-CCCceEEEEecCCCEEEE----EeCC-------cEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-
Q 001358          928 TPDGVM---TL-APSETHIQFHKDQTRFLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-  991 (1092)
Q Consensus       928 ~~~~~~---~~-~~~v~~l~~s~dg~~la~----~~d~-------~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-  991 (1092)
                      ......   .. .+.-.-+++++....|.+    +.++       .|.+||+.+++.+..+...  .++.++..|.|.+ 
T Consensus       225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P  302 (342)
T PF06433_consen  225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKP  302 (342)
T ss_dssp             SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-
T ss_pred             ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCc
Confidence            321100   00 034566899887766655    2222       4888999999999886543  3577999999887 


Q ss_pred             EEEEE-eCCCcEEEEECCCCceEEeec
Q 001358          992 MVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       992 ~l~t~-s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      +|++. ..++.+.+||..+|+.+.++.
T Consensus       303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  303 LLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            45444 457899999999999998887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=9.7e-07  Score=91.61  Aligned_cols=298  Identities=13%  Similarity=0.139  Sum_probs=190.9

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      |...|+.+..+ -.+++++++-||.++.|.-..-                    .|..+..   ....|...+.+++.+.
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY   63 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence            66667666544 4567999999999999862110                    1111111   1113777888999999


Q ss_pred             CCCEEEEEe--CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCC--CEEEEEeCCCeEEEEEcCCce-eeEee-ccc
Q 001358          813 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN--NVIAIGMDDSTILIYNARSSE-VISKL-EGH  885 (1092)
Q Consensus       813 dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~--~~lasg~~dg~v~iwd~~~~~-~~~~l-~~h  885 (1092)
                      +|.++.+.+  |..++++|+++...+..++-.. ....+...++.|.  .+-++.-.+|.+.++|-.... ....+ .-|
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            999999976  6889999998776654333211 1122333344111  233334467899999976543 33333 349


Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee--eee------eecCCCCcCCCCCceEEEEecCCCEEEE-EeC
Q 001358          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT--CRS------LQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE  956 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~--~~~------~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d  956 (1092)
                      ..+|.++.+++-+..++|....|.|.-|..+. ..+.  ...      -..+-+.........++.|+|+|..+++ +.|
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            99999999999999999999999999999884 1000  000      0001111122245789999999999999 788


Q ss_pred             CcEEEEEcCCceeeeeeccC-------------------------------C-CcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001358          957 THLAIYEAEELTCLKQWFPI-------------------------------S-SVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       957 ~~v~lwd~~~~~~~~~~~~~-------------------------------h-~~~v~~l~fs~dg~~l~t~s~Dg~i~v 1004 (1092)
                      ..|++++..+|+.++.+-..                               | ...-+.++|...|.+|+-++-=| |+|
T Consensus       223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv  301 (558)
T KOG0882|consen  223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV  301 (558)
T ss_pred             cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence            99999999998766542111                               2 34456788999999999887654 899


Q ss_pred             EECCCCceEEeecccc---------ccCCCC-ccC------cccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001358         1005 HEASNLEVQCRILSTA---------YLRPTT-SCL------HVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~---------~~~~~~-~~~------~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      .++.++.+.+.+.-..         +..... +..      ...++ +.+.+ |+..+.++-.-..+++|
T Consensus       302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~-dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK-DPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC-CCeEEEeeeecceEEEE
Confidence            9999998876553111         111000 000      01111 22444 57888888888899998

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.61  E-value=1e-05  Score=78.47  Aligned_cols=202  Identities=13%  Similarity=0.092  Sum_probs=135.1

Q ss_pred             CEEEEEe-CCeEEEEEcCCceee-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEE
Q 001358          815 AYLFSAS-GGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL  892 (1092)
Q Consensus       815 ~~l~~~s-dg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  892 (1092)
                      -+||.++ .|...+|...+.+.. .....+...|+-+.-.-+...-+..++.|.++++.+++.+.....+.-..-.+.++
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~  164 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL  164 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence            4566664 689999999866543 33333444332221111122345567888888888887654333222111237889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceee-
Q 001358          893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCL-  970 (1092)
Q Consensus       893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~-  970 (1092)
                      ++|+|++++++.++...|..|.++.......+.......     ..-.+..||.....+|+ ..||++.|||++..... 
T Consensus       165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~-----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS-----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC-----CCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            999999999999999999999998754333221111111     23568899999999998 58999999999865432 


Q ss_pred             ---eeeccCCCcCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCceEEeeccccc
Q 001358          971 ---KQWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus       971 ---~~~~~~h~~~v~~l~fs~dg~--~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
                         ....+.|.+.+..+.||+-|.  +|+..-.-+.+.|-|++++.-...+.....
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d  295 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD  295 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence               223456899999999998663  455555667899999999988877764443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.59  E-value=9.7e-07  Score=86.97  Aligned_cols=160  Identities=21%  Similarity=0.279  Sum_probs=109.8

Q ss_pred             CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---eeEEecCCC-----CCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358          800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      .|...+.++.|..|...++++.|=.|-+|+++--.   .+..+++|.     .-|++..|+|.....+...+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            48888999999999999999999999999986322   234455554     3578999999777888889999999999


Q ss_pred             EcCCcee----------------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358          872 NARSSEV----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       872 d~~~~~~----------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      |++...+                ..-+.+-...|..+.|+++|+++++-+. -+|+|||+...+.    ++.+..-|...
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~----pikTi~~h~~l  324 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN----PIKTIPMHCDL  324 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC----CceeechHHHH
Confidence            9973211                1112223457888999999999997654 5699999986431    22222111100


Q ss_pred             ---------CCC---ceEEEEecCCCEEEEE-eCCcEEEEEc
Q 001358          936 ---------APS---ETHIQFHKDQTRFLLV-HETHLAIYEA  964 (1092)
Q Consensus       936 ---------~~~---v~~l~~s~dg~~la~~-~d~~v~lwd~  964 (1092)
                               ...   -..+.||.|.+.+.+| ..+...+|-+
T Consensus       325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence                     011   2457889888888874 4555556553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.56  E-value=1.6e-05  Score=83.35  Aligned_cols=195  Identities=13%  Similarity=0.092  Sum_probs=121.1

Q ss_pred             CCCEEEEE-eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee-cccc---C
Q 001358          813 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K  887 (1092)
Q Consensus       813 dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~---~  887 (1092)
                      ++..++++ .++.+..||..+|+.+..+............   .+..+++++.++.++.+|..+|+.+.+. ....   .
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            45555555 5799999999999998887653221122222   3346666778899999999999998874 3221   1


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC--CCCCceEEEEecCCCEEEEEeCCc-EEEEEc
Q 001358          888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA  964 (1092)
Q Consensus       888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~s~dg~~la~~~d~~-v~lwd~  964 (1092)
                      .........++..++.+..++.|..+|.++|+..-............  ....+..-....++..+++..++. +.+ |+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~  190 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL  190 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence            12223333347888888889999999999987654333322221110  000122333333554444456665 555 99


Q ss_pred             CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEe
Q 001358          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~ 1015 (1092)
                      .+++.+-...   ...+.. ....++..|+.++.++.|..||+.+|+....
T Consensus       191 ~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  191 ATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            9998663211   122222 2457788888888999999999999988743

...

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.56  E-value=7.8e-05  Score=77.61  Aligned_cols=282  Identities=13%  Similarity=0.146  Sum_probs=154.7

Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCceEEEEeCCCC---
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG---  621 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~i~iwd~~~~~~~~~~~~~~~---  621 (1092)
                      ..++++|..+++.+..+..-     -...+..+|+++.+++++          ..-.|.+||..+-.....+..+..   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            46999999999988888763     355577899999998754          344699999999988887765543   


Q ss_pred             --CCCCceEEEccCCCEEEEEeC--CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCC
Q 001358          622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  697 (1092)
Q Consensus       622 --~~~v~~v~~s~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  697 (1092)
                        .......+++.||+++.+...  ..+|.|.|+..++.+..+....    |.-+-|.+                     
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~---------------------  146 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG---------------------  146 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE---------------------
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC---------------------
Confidence              123456788889988877643  4678888888776655443211    10111100                     


Q ss_pred             cccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc--
Q 001358          698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT--  775 (1092)
Q Consensus       698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~--  775 (1092)
                      .+.+.+-+.||.+....++............-......-+..-++...+..++-.+-+|.++--++............  
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccccc
Confidence            011333344444444433311111100000000111112223344555555666677777776666544321100000  


Q ss_pred             -cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CC-------eEEEEEcCCceeeEEecCCC
Q 001358          776 -TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GG-------VISLYIVMTFKTILTIMPPS  843 (1092)
Q Consensus       776 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg-------~i~iwd~~~~~~~~~~~~~~  843 (1092)
                       ....-.-|.+.                 .-.-+++++..+.|.+.-    ++       .|.++|+.+++.+.++.. .
T Consensus       227 t~~e~~~~WrPG-----------------G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~  288 (342)
T PF06433_consen  227 TDAEKADGWRPG-----------------GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-E  288 (342)
T ss_dssp             -HHHHHTTEEE------------------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-E
T ss_pred             CccccccCcCCc-----------------ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-C
Confidence             00000113222                 223456666554444331    11       388999999999998873 2


Q ss_pred             CCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCceeeEeecc
Q 001358          844 PTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      ..+.+++++.++..+|++.+ .++.+.+||..+|+.+.++.+
T Consensus       289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            45779999996666776554 578999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.55  E-value=8.4e-05  Score=87.55  Aligned_cols=251  Identities=14%  Similarity=0.157  Sum_probs=147.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee
Q 001358          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      ..|.++.|..+.+.++.+...|.|.+-|.++......-...   ..|.+++|+||+..++..+..+++.+-... -.++.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence            57999999999999999999999999988876554333333   348999999999999999998888765432 11110


Q ss_pred             ecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEE
Q 001358          659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS  738 (1092)
Q Consensus       659 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~  738 (1092)
                      ...-+.      ...+.+....+|++.....|.|.                                          ...
T Consensus       145 E~~L~~------d~~~~sk~v~VGwGrkeTqfrgs------------------------------------------~gr  176 (1265)
T KOG1920|consen  145 EKPLDA------DDERKSKFVNVGWGRKETQFRGS------------------------------------------EGR  176 (1265)
T ss_pred             cccccc------ccccccccceecccccceeeecc------------------------------------------hhh
Confidence            000000      00001111111111111111000                                          000


Q ss_pred             EEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001358          739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  818 (1092)
Q Consensus       739 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~  818 (1092)
                      ..+.-+...                          ..          ..+.         ......-..++|.-||+++|
T Consensus       177 ~~~~~~~~~--------------------------ek----------~~~~---------~~~~~~~~~IsWRgDg~~fA  211 (1265)
T KOG1920|consen  177 QAARQKIEK--------------------------EK----------ALEQ---------IEQDDHKTSISWRGDGEYFA  211 (1265)
T ss_pred             hcccccccc--------------------------cc----------cccc---------hhhccCCceEEEccCCcEEE
Confidence            000000000                          00          0000         00122235689999999999


Q ss_pred             EEe-----C-CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---ceeeEeecccc
Q 001358          819 SAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGHS  886 (1092)
Q Consensus       819 ~~s-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h~  886 (1092)
                      +..     + ..|++||-+ |..-..-....+.-.+++|-| .|.++|+-.   .|+.|.+|.-+.   |+....+....
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de  289 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE  289 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence            853     4 679999987 544433333445557899999 888888753   455799998553   22233334344


Q ss_pred             CCeEEEEEcCCCCEEEE---EeCCCcEEEEEcCCCceeeeeeeec
Q 001358          887 KRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQT  928 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s---~s~Dg~i~iwd~~~~~~~~~~~~~~  928 (1092)
                      .+|..++|+.++..||+   ......|++|-+.+........+..
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~  334 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQF  334 (1265)
T ss_pred             cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEec
Confidence            55999999999999998   4555569999999865444334433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.54  E-value=1.5e-06  Score=83.78  Aligned_cols=209  Identities=14%  Similarity=0.204  Sum_probs=126.1

Q ss_pred             ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      |+.+.|+-+-  .|+++..++.+.....-++.+..     .|.=.....+++.  +..|+++-.+-+.+--++.+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence            6667777664  57888777777777665554432     2221111122222  2235544444455556889999999


Q ss_pred             CCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCCcceEE
Q 001358          417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      ||.+.+.+.+.-..+.  ..+. .|.+. .+.+....+.  .+.+++     .-+..++|+++..+.+..-......|.+
T Consensus       110 dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhh--hhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            9999999987622211  1111 12221 1222333344  233222     2234566666544333222222334888


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEeCCC
Q 001358          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ++-+|... +.+++|+.||.+-+||++...... .+..|+.++..+.|+| ++..|++++.    ++.+..||..+
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST  255 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence            88877644 688999999999999999875443 5677888999999999 5678888876    55699999654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.51  E-value=1.9e-05  Score=88.85  Aligned_cols=136  Identities=13%  Similarity=0.061  Sum_probs=90.4

Q ss_pred             EecCCCEEEEEeCCeEEEEEcCC----c-eeeEEecCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCCcee-----
Q 001358          810 LSKNDAYLFSASGGVISLYIVMT----F-KTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV-----  878 (1092)
Q Consensus       810 ~s~dg~~l~~~sdg~i~iwd~~~----~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~-----  878 (1092)
                      +.++|++... .++.|.+.|..+    + +.+..+. -......++++| |+++++++ ..+.+|.|+|+.+.+.     
T Consensus       284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            4557887665 467899999988    3 4444443 455677899999 77766654 5588999999988552     


Q ss_pred             -------eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC------CceeeeeeeecCCCCcCCCCCceEEEE-
Q 001358          879 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG------WGIQTCRSLQTPDGVMTLAPSETHIQF-  944 (1092)
Q Consensus       879 -------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~l~~-  944 (1092)
                             +.+.+-- ..-...+|.++|+...|..-|..|..|++..      ++. ....+....-+..    +-.+.- 
T Consensus       361 ~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~-~~~v~~k~dV~y~----pgh~~~~  434 (635)
T PRK02888        361 IKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEK-VDPIVQKLDVHYQ----PGHNHAS  434 (635)
T ss_pred             CCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhcccc-CCcceecccCCCc----cceeeec
Confidence                   3333322 2334578999999999999999999999986      111 1123333332222    223333 


Q ss_pred             -----ecCCCEEEEE
Q 001358          945 -----HKDQTRFLLV  954 (1092)
Q Consensus       945 -----s~dg~~la~~  954 (1092)
                           .|||++|++.
T Consensus       435 ~g~t~~~dgk~l~~~  449 (635)
T PRK02888        435 MGETKEADGKWLVSL  449 (635)
T ss_pred             CCCcCCCCCCEEEEc
Confidence                 7899999883

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.50  E-value=4.1e-05  Score=86.15  Aligned_cols=182  Identities=12%  Similarity=0.072  Sum_probs=117.4

Q ss_pred             EecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeeEeec
Q 001358          810 LSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLE  883 (1092)
Q Consensus       810 ~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~  883 (1092)
                      ++|||+.+...+  .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+.    ++..-+..+...+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            567887765554  4778899999888777765332 456789999 888888776322    22222222211111111


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC----CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCC
Q 001358          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HET  957 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~  957 (1092)
                      --  .+  -++.++|++...  .++.|.+.|..+    +. .....+....       ....+++||||++++++  .+.
T Consensus       278 i~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS~  343 (635)
T PRK02888        278 IA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLSP  343 (635)
T ss_pred             hH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCCC
Confidence            00  00  133457877665  367799999887    22 1122333332       35689999999999984  578


Q ss_pred             cEEEEEcCCcee------------eeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358          958 HLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       958 ~v~lwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
                      ++.|+|+.+.+.            ..+...  .......+|.++|....|-.-|..|..|++..
T Consensus       344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            999999987553            222221  34455678999999888899999999999987

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.48  E-value=0.00098  Score=64.98  Aligned_cols=136  Identities=13%  Similarity=-0.019  Sum_probs=88.9

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC
Q 001358          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN  579 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~  579 (1092)
                      .+++.|+..+.+.--|..++........ +.++.+-+.- -|++++.+..    .+-+++.+.++|.....+....   .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~   94 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T   94 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence            4667777777777777777665554332 2233333322 4667777776    4459999999998888777654   2


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001358          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1092)
Q Consensus       580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  646 (1092)
                      --......+++..+.+|+.|++.+..|..+...+...+..+..  ..+-+..|-...|.++...|.+
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence            2233456788999999999999999999999999887766553  2334455522333334444443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.47  E-value=4.5e-07  Score=63.34  Aligned_cols=39  Identities=31%  Similarity=0.595  Sum_probs=37.2

Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      |+++.++.+|.+.|++|+|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.47  E-value=4.2e-07  Score=86.11  Aligned_cols=135  Identities=22%  Similarity=0.273  Sum_probs=98.4

Q ss_pred             hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001358           37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA  116 (1092)
Q Consensus        37 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~  116 (1092)
                      +...++++|++||++.|++.+......-... ...+.|.|++|+|+|+|..++..+|+.+.|+++.|......+.++++.
T Consensus         4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~-~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~   82 (145)
T PF10607_consen    4 ERKKIRQAILNGDIDPAIEWLNENFPELLKR-NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM   82 (145)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhc-CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3678999999999999999998752111111 123889999999999999999999999999999766543567788888


Q ss_pred             HhhcccCccc--ccccccccCCChHHHHHHHHHHHhhcccCcccccccCCCCCc-cHHHHHHHHHHHHHH
Q 001358          117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ  183 (1092)
Q Consensus       117 ~ll~~~~~~~--~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q  183 (1092)
                      .+|...+..+  ...+..+.+  .+.|+++.+.+.+.+-...-         +| .+.|..++++....+
T Consensus        83 ~lL~~~~~~~~~~s~~~~l~~--~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   83 SLLAYPDPEEPLPSPYKELLS--PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHHcCCcccccchHHHHHhC--hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            8888877654  223232212  36788888888887655332         34 567888888776554

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.46  E-value=0.00017  Score=80.06  Aligned_cols=255  Identities=16%  Similarity=0.222  Sum_probs=131.7

Q ss_pred             cCCCceEEEEE--------cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       343 spdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      |||++++|..-        +..+.+.|+|+++++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            78998665522        123678889998876543                    22225678889999999999998


Q ss_pred             eCCCEEEEEEccCCCCccceEEecc-------c---------ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+.|||||+++.++.. .+..|..+.+.     
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~-d~~~v~~~~~~-----  131 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF-DEREVPEYPLP-----  131 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE-E-TTS-EEEEE-----
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE-CCcCCceEEee-----
Confidence            5 56799999887743321  2222       0         112356889999995333322 23444444321     


Q ss_pred             EEEecCCc---ceEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceE-Ee----cCCCCceEEEEEecCCCEEEEEe
Q 001358          479 YSFEGHGA---PVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARV-DY----DAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       479 ~~~~~~~~---~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~-~~----~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                       .......   .+..+.+ |.+       |..+-  .+.++|+.+++... ..    .....-+..+.|+++++.++..-
T Consensus       132 -~~~~~~~~yp~~~~~~Y-Pk~-------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~  202 (353)
T PF00930_consen  132 -DYSPPDSQYPEVESIRY-PKA-------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW  202 (353)
T ss_dssp             -EESSSTESS-EEEEEE---BT-------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred             -ccCCccccCCccccccc-CCC-------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence             0111110   1222222 111       11111  35667777666532 21    23345688999999999444433


Q ss_pred             cC-CCCceeEEEEeCCCCeEEEEEeeccccCCce---EEEEEc-CCCCEEEE-EeCCCe--EEEEECCCCceEEEEeCCC
Q 001358          549 TS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSV---SVVHFD-TAKDQILA-AGDDHV--IKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       549 ~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~-~s~dg~--i~iwd~~~~~~~~~~~~~~  620 (1092)
                      .+ ......+.+.|..++..........  ...|   ....+. +++..++. ...+|.  |++++..++... .+..  
T Consensus       203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~--~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~--  277 (353)
T PF00930_consen  203 LNRDQNRLDLVLCDASTGETRVVLEETS--DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTS--  277 (353)
T ss_dssp             EETTSTEEEEEEEEECTTTCEEEEEEES--SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS---
T ss_pred             cccCCCEEEEEEEECCCCceeEEEEecC--CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-cccc--
Confidence            33 3345667788988876654443332  2222   244444 66655544 446665  444565555533 3322  


Q ss_pred             CCCCCc-eEEEccCCCEEEEE
Q 001358          621 GLPENP-RICFNKNGTLLAVI  640 (1092)
Q Consensus       621 ~~~~v~-~v~~s~~~~~l~~~  640 (1092)
                      +.-.|. -+.++++++.+...
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~  298 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFT  298 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEE
T ss_pred             CceeecccceEcCCCCEEEEE
Confidence            122343 36667766655433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=2.2e-05  Score=80.82  Aligned_cols=251  Identities=13%  Similarity=0.154  Sum_probs=147.3

Q ss_pred             eecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ++.+|...|..++|||..+ +|..++.+..|+|.|+++...+.   .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            5788999999999999877 78888999999999999976554   44456 78999999999876 8889999999999


Q ss_pred             EECCCCce-eEEEec--CCcceEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc--eEEec-CCCCceEEEEEec
Q 001358          470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYD-APGLGCTRMAYSA  539 (1092)
Q Consensus       470 wd~~~~~~-~~~~~~--~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~i~~~~~s~  539 (1092)
                      ||++..+- +..+.+  ...+|..++..+.    +.+.+++..+.+  +..|.+.-...  ..... ...+.+.++.+.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986542 223322  2234444432211    122344444433  34454432221  22222 2244566666666


Q ss_pred             CCCEEEEEecCCCCceeEE----EEeCCCCeEEEEEe----ecccc-CCceEEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001358          540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQ----GLQLQ-HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK  609 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~----~~~~~-~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~  609 (1092)
                      -.+.++.....+....+++    --|-.+|..+..-+    |.... ...-..+.-.+++++++. ++..+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            6666666554321111111    11222333221111    11000 001112222345566655 55778899999999


Q ss_pred             CceEEEEeCCCCCCCCceEEEcc-C-CCEEEEEeCCCeEEEEECC
Q 001358          610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP  652 (1092)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ++.++++....   .|..++... + +.+|++-++ ..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence            99999998763   355555443 2 446666554 578887654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=5e-06  Score=86.49  Aligned_cols=259  Identities=15%  Similarity=0.106  Sum_probs=175.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECC
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV  473 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~  473 (1092)
                      |.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|-+.|.+++.+-|+.  ++.|.+. |..++++|++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence            77778777655 567999999999999998765233333335668999999999999998  7888777 9999999988


Q ss_pred             CCceeEEEecCCcceEEEeecccCCc--cEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEecCCCEEEEEec
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      +-..+.-++-..-|=.+-.+...+|-  .+-++.-.+|.+.++|-....+.  ..-..|..+|..+.+.+-+..+++.- 
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-  163 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-  163 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc-
Confidence            65544322211111111111111111  23344456788999987655433  34455778999999999999888764 


Q ss_pred             CCCCceeEEEEeCCC------CeEEEEE------eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          550 SKEGESFLVEWNESE------GAIKRTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~------~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                         ..+.|..|....      .+..-.+      -+.........++.|+|++..+.+-+.|..|++++..+|+.++.+.
T Consensus       164 ---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  164 ---ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ---ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence               367899998763      1111111      1111123567889999999999999999999999999988765443


Q ss_pred             CCC-------------------------------CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358          618 AGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       618 ~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ...                               ....-..++|...|++|+-++-- .|++.++.+++..+.+.
T Consensus       241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG  314 (558)
T ss_pred             ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence            210                               11123457888889999888775 48899999887766554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=7e-07  Score=89.54  Aligned_cols=169  Identities=16%  Similarity=0.117  Sum_probs=126.9

Q ss_pred             ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      -+.++||-+-.-+-++.+.+..|-+-|+++|-...                    + ...+.|.++.|...+.++..|+.
T Consensus       214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcR  272 (425)
T KOG2695|consen  214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCR  272 (425)
T ss_pred             chhhhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEeccc
Confidence            34457775432233445566789999999985432                    1 25678999999999999999999


Q ss_pred             CCEEEEEEccCCCC--ccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCce---eEEEecCCcceEE
Q 001358          417 KHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYS  490 (1092)
Q Consensus       417 d~~i~iwd~~~~~~--~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~  490 (1092)
                      +|.|...|+..+..  ......+ .|...|+++.... +++  .|.+.+.+|+|++||.+--++   ++++.||-..-.-
T Consensus       273 ngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~  349 (425)
T KOG2695|consen  273 NGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY  349 (425)
T ss_pred             CCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccc
Confidence            99999999986521  1111122 5889999998877 455  788899999999999886666   8889999776666


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC
Q 001358          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~  529 (1092)
                      +-++..+....+++++.|...|+|.++.+....++....
T Consensus       350 l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             cccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            666666777799999999999999999887776665443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.43  E-value=2.8e-06  Score=82.05  Aligned_cols=207  Identities=15%  Similarity=0.175  Sum_probs=124.2

Q ss_pred             EecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeC-----CCcE
Q 001358          838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGG-----DAQI  910 (1092)
Q Consensus       838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~-----Dg~i  910 (1092)
                      .+..|..+-.+-+.+- -+.-++++..||.+.+++.+.-. ...++.. |.+. -+......++.+.+++.     -+..
T Consensus        84 ~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~  161 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNF  161 (319)
T ss_pred             eeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccce
Confidence            3333443333333444 46688999999999999877521 1111111 2221 11222234444443321     1235


Q ss_pred             EEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec
Q 001358          911 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1092)
Q Consensus       911 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1092)
                      ++|+++..+        ++.........|.+++-.|..+.+++ | .||.+.+||.+.......++..|..+|+.+.|.|
T Consensus       162 ~a~~~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  162 YANTLDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP  233 (319)
T ss_pred             eeecccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence            666666421        11111111124888999998777666 4 6789999999999888888889999999999998


Q ss_pred             -CCCEEEEEeCCCcEEEEECCCCceEEeec---cccccCCCCccCcccc------------eEE-EECCCCCCEEEEEeC
Q 001358          989 -DCRMVFTSFVDGTLSIHEASNLEVQCRIL---STAYLRPTTSCLHVYP------------HAI-AAHPLKPTQFAVGLT 1051 (1092)
Q Consensus       989 -dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~------------~~~-~~~p~~~~~l~~~~~ 1051 (1092)
                       ++..|+++++||.+--||..+--+-....   ...|+..    +++++            .++ +|+- -+..|++|++
T Consensus       234 k~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsg----D~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd  308 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSG----DPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTD  308 (319)
T ss_pred             CCchheeEecCCCcEEEEcCCCceEEecCccccccccccC----CcccceEeeeccccccceeeeeeec-cCceEEeccc
Confidence             67899999999999999988633221111   1112222    22222            111 1222 2568999999


Q ss_pred             CCcEEEEe
Q 001358         1052 NGEVYVIE 1059 (1092)
Q Consensus      1052 dg~v~~w~ 1059 (1092)
                      -+.|++.+
T Consensus       309 ~eaIyl~~  316 (319)
T KOG4714|consen  309 AEAIYLTR  316 (319)
T ss_pred             cceEEEec
Confidence            99999876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.41  E-value=5.2e-06  Score=93.92  Aligned_cols=180  Identities=16%  Similarity=0.180  Sum_probs=131.4

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEE
Q 001358          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1092)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.++-+..   +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            334455554 677888999988887776655555655555   6789999999999999999999999999999999977


Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC--CCEEEEEeCCcEE
Q 001358          892 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA  960 (1092)
Q Consensus       892 l~~spdg~~l~s~s~---------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d--g~~la~~~d~~v~  960 (1092)
                      +..  .|+.|+++|.         |.-|+|||+..-+...  +++.+.+       ..-+.|.|.  .+..+++..|+..
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence            655  6889999986         4568999998733222  3333333       234677775  3344447888999


Q ss_pred             EEEcCC---ceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001358          961 IYEAEE---LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       961 lwd~~~---~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd 1006 (1092)
                      +-|..+   ...-.......+..+..+++|++|..++.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            888432   2111111223356699999999999999999999999997

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.39  E-value=8.7e-05  Score=87.45  Aligned_cols=282  Identities=11%  Similarity=0.152  Sum_probs=159.5

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .+.|.++.|.-++.. +..+..+|.|.+-|.++.....                    ...-...|.+++||||++.++.
T Consensus        68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l  126 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL  126 (1265)
T ss_pred             CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence            469999999999975 6667778999999988876553                    2234578999999999999999


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecc---cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcceE
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVY  489 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~  489 (1092)
                      .+..+++.+-+-. -..+... .+..   ..+....+-|-....+   +-|+ .|....-+.... +.+.... ....=+
T Consensus       127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs-~gr~~~~~~~~~ek~~~~~~-~~~~~~  199 (1265)
T KOG1920|consen  127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGS-EGRQAARQKIEKEKALEQIE-QDDHKT  199 (1265)
T ss_pred             EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecc-hhhhcccccccccccccchh-hccCCc
Confidence            9988877654432 1111110 0100   0111222333222211   0111 111111110000 0000001 111223


Q ss_pred             EEeecccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          490 SLCPHAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       490 ~i~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      +++|  .+||+++++.     ...+.|+|||-+ +.....-....+.-.+++|-|.|..+++.....+ +..|.++..+ 
T Consensus       200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErN-  274 (1265)
T KOG1920|consen  200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERN-  274 (1265)
T ss_pred             eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecC-
Confidence            4566  6688888873     233789999876 3322232333334567999999999988775544 5568888743 


Q ss_pred             CeEEEEEeeccc-cCCceEEEEEcCCCCEEEE---EeCCCeEEEEECCCCceE--EEEeCCCCCCCCceEEEccC-CCEE
Q 001358          565 GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILA---AGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLL  637 (1092)
Q Consensus       565 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~---~s~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l  637 (1092)
                      |-.-..|.-... ....+..++|+.++..|++   ......|++|-..+....  +.+.....    .-+.|+|. ...+
T Consensus       275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L  350 (1265)
T KOG1920|consen  275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTL  350 (1265)
T ss_pred             CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeE
Confidence            333232222111 1134899999999998887   455566999998775543  33333222    22778883 2334


Q ss_pred             EEEeCCCeEEEEECC
Q 001358          638 AVIANENRIKILETP  652 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~  652 (1092)
                      .+-..+|...+++..
T Consensus       351 ~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  351 HVLRESGQRLVRDFA  365 (1265)
T ss_pred             EEEecCCcEEEEEEE
Confidence            444466666665543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.39  E-value=0.00066  Score=66.11  Aligned_cols=115  Identities=15%  Similarity=0.120  Sum_probs=80.9

Q ss_pred             ecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEE
Q 001358          342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ  421 (1092)
Q Consensus       342 ~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~  421 (1092)
                      .-+|.++++..|+..+.+.--|..+|+..-...                    -...|.+-+.- -|++++.|...|.++
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i--------------------lg~RiE~sa~v-vgdfVV~GCy~g~lY   76 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI--------------------LGVRIECSAIV-VGDFVVLGCYSGGLY   76 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh--------------------hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence            345556789999999999999999998765311                    11222222222 477899999999999


Q ss_pred             EEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          422 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       422 iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +-+.++|+.......+..-  .+ .....+++.  ++..|+.|++.+.-|..+..++...+
T Consensus        77 fl~~~tGs~~w~f~~~~~v--k~-~a~~d~~~g--lIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   77 FLCVKTGSQIWNFVILETV--KV-RAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             EEEecchhheeeeeehhhh--cc-ceEEcCCCc--eEEEecCCCcEEEecccccceEEecc
Confidence            9999999766543322211  11 234456777  89999999999999999988887654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.38  E-value=7.9e-07  Score=62.10  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=35.3

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEe
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  363 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd  363 (1092)
                      ++++++.+|++.|++++|+|++. ++++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46789999999999999999998 799999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.37  E-value=0.00029  Score=78.19  Aligned_cols=303  Identities=12%  Similarity=0.103  Sum_probs=156.0

Q ss_pred             ecCCCEEEEEecCC-----CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001358          538 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       538 s~dg~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                      |||+++++......     +..+.++++|+.+++....... .   ..+....|+|+|+.++... ++.|++++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            57888877643211     1245689999999877665554 2   5788899999999988876 47899999888744


Q ss_pred             EEEEeCCCC----------------CCCCceEEEccCCCEEEEEeCC-CeEEEEECC---CCCeeeecccccccceeeee
Q 001358          613 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV  672 (1092)
Q Consensus       613 ~~~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~v~~~~~  672 (1092)
                      .+ +...+.                ...-..+.|||||++|+....| ..+..+.+.   ....      ....+..+.+
T Consensus        76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y  148 (353)
T PF00930_consen   76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY  148 (353)
T ss_dssp             EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred             EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence            33 322220                1223578999999999887553 333333222   1110      0001111111


Q ss_pred             cCCcccccccccCCceeecCCCCCCcccceeeccccc--cceeceeeccCccceecccC--CccccccEEEEEEecCCcE
Q 001358          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA  748 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~  748 (1092)
                      .                            ..|.....  +.++++..++..   .+..+  .......+..+.|.++++.
T Consensus       149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence            1                            11111122  223343322221   11111  1224567889999999984


Q ss_pred             EEEeecC---CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe-cCCCEEEEEe--C
Q 001358          749 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G  822 (1092)
Q Consensus       749 l~~~~~d---g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s-~dg~~l~~~s--d  822 (1092)
                      ++..-.+   ..+.+..                    +|+.++.+.........+--.......+. +++..++..+  +
T Consensus       198 l~~~~~nR~q~~~~l~~--------------------~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLVL--------------------CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             EEEEEEETTSTEEEEEE--------------------EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             EEEEEcccCCCEEEEEE--------------------EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence            4444332   2233322                    23333332222211111111222355655 7776666665  4


Q ss_pred             C--eEEEEEcCCceeeEEecCCCCCeEE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCceeeEeeccccCCeEEEEEc
Q 001358          823 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1092)
Q Consensus       823 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1092)
                      |  .|.+++...+.. ..+....-.|+. +.++++++.+.+++..++    .++.-++.++..+..+....+.-..+.||
T Consensus       258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            4  477777776663 455545556744 678884455555666533    56666677233445555433333689999


Q ss_pred             CCCCEEEEE
Q 001358          896 DALNILVSS  904 (1092)
Q Consensus       896 pdg~~l~s~  904 (1092)
                      |+|++++-.
T Consensus       337 pdg~y~v~~  345 (353)
T PF00930_consen  337 PDGKYYVDT  345 (353)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCCEEEEE
Confidence            999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.36  E-value=8.8e-05  Score=82.42  Aligned_cols=138  Identities=10%  Similarity=0.071  Sum_probs=101.1

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.--+++..++ +++.|+.-|.+.+++-.+|+.+...                  ..+-.+.+..+..|++..++|.|
T Consensus        34 ~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAag   94 (726)
T KOG3621|consen   34 ARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAAG   94 (726)
T ss_pred             ceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhhh
Confidence            3666667777888 6899999999999999888776521                  22345667778899999999999


Q ss_pred             eCCCEEEEEEccCCCCccceEE---ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCCcc
Q 001358          415 YSKHIVQLYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAP  487 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~---l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~  487 (1092)
                      +..|.|.++-++.+........   -..|...|++++|++|+.  .+++|...|+|..-.+.+.    ...+.+......
T Consensus        95 t~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~  172 (726)
T KOG3621|consen   95 TASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSE  172 (726)
T ss_pred             cCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcc
Confidence            9999999998887433222111   123778999999999999  7999999999999887772    112333334556


Q ss_pred             eEEEee
Q 001358          488 VYSLCP  493 (1092)
Q Consensus       488 v~~i~~  493 (1092)
                      |..+..
T Consensus       173 IVQlD~  178 (726)
T KOG3621|consen  173 IVQLDY  178 (726)
T ss_pred             eEEeec
Confidence            655554

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=2.3e-06  Score=87.14  Aligned_cols=167  Identities=17%  Similarity=0.246  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhHh
Q 001358            6 KDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI   76 (1092)
Q Consensus         6 ~~~~~li~q~L~~~G~~~s~~~L~~Esg~~--------~~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~~~~i   76 (1092)
                      +-+-|+|..||..+||.++|..|-++|.+.        .++...+++|++|+...|+..++.- ..+.  +..-.+-|.+
T Consensus       116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l  193 (389)
T KOG0396|consen  116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL  193 (389)
T ss_pred             HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence            446789999999999999999999999974        2378889999999999999887542 1111  1122367999


Q ss_pred             HHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccccccccCCChHHHHHHHHHHHhhcccCc
Q 001358           77 RKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP  156 (1092)
Q Consensus        77 ~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~  156 (1092)
                      +.|.|+||+..+++.+|+.+.|+.|.|........++....++.++...+...   +.+-....|   ++.|+.++..+.
T Consensus       194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~r---w~~l~~lF~s~a  267 (389)
T KOG0396|consen  194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADR---WSVLADLFLSEA  267 (389)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHH---HHHHHHHhhHHH
Confidence            99999999999999999999999999998777888898888998865432211   111112223   233333333222


Q ss_pred             ccccccCCCCCccHHHHHHHHHHHHHHH
Q 001358          157 ILQGKLKFPSIKRQRLRRLINQSLNWQH  184 (1092)
Q Consensus       157 ~~~~~~~~~~~p~~rL~~Ll~qa~~~q~  184 (1092)
                      .  .-..+|+-|  +|.++|+--+..|.
T Consensus       268 ~--~l~~i~~~~--~L~~~l~~GLsalK  291 (389)
T KOG0396|consen  268 L--KLFGIPINP--ALTIYLQAGLSALK  291 (389)
T ss_pred             H--HHhCCCCCc--HHHHHHHhhhhhcc
Confidence            1  112223222  48888887777774

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.32  E-value=1.7e-06  Score=86.88  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=112.2

Q ss_pred             EEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-----eeeEeeccccCCeEE
Q 001358          817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHSKRVTG  891 (1092)
Q Consensus       817 l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l~~h~~~V~~  891 (1092)
                      +++|.+-.+-+-++++|-. +.|. ..+.|.++.|.. .+.++..|+.+|.|..+|++.+     .+...+. |.+.|++
T Consensus       228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts  303 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS  303 (425)
T ss_pred             ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence            4455567788888887643 3333 567888899987 7889999999999999999874     3555665 9999999


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCcee
Q 001358          892 LVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC  969 (1092)
Q Consensus       892 l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~  969 (1092)
                      +..-. ++++|.+.+.+|.|++||+..-+...  -+...+||......+ -+...+....+++ |.|-..+||.+..|..
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeeccccccccc-ccccccccceEEEccCeeEEEEEecccCce
Confidence            88776 78899999999999999998743221  367777776522222 2234555555655 7888999999999998


Q ss_pred             eeeec
Q 001358          970 LKQWF  974 (1092)
Q Consensus       970 ~~~~~  974 (1092)
                      +.+..
T Consensus       381 l~tip  385 (425)
T KOG2695|consen  381 LCTIP  385 (425)
T ss_pred             eeccC
Confidence            88754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.31  E-value=0.0023  Score=68.28  Aligned_cols=278  Identities=13%  Similarity=0.126  Sum_probs=139.5

Q ss_pred             eecCCCceEEEEEcCcCc--EEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEECCCCCEEEEEeCC
Q 001358          341 DFHPVQHTLLLVGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d  417 (1092)
                      +|.+||++||.++..||.  +.+-|+.+++..+                    |+... .......++|+++.++.....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~  101 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG  101 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence            689999888888877765  6666888887664                    33332 222246778999998777666


Q ss_pred             CEEEEEEccCCCCccceEEecccccceeEEEee--CCCCcEEEEEEe----------------------CCCcEEEEECC
Q 001358          418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDAV  473 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s--~d~~~l~l~s~~----------------------~d~~i~vwd~~  473 (1092)
                      ..|+--|+++.+.. .  .+......+-...|.  .|+.  .++..-                      ..+.|.--|+.
T Consensus       102 ~~l~~vdL~T~e~~-~--vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen  102 RSLRRVDLDTLEER-V--VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             TEEEEEETTT--EE-E--EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             CeEEEEECCcCcEE-E--EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            78888899987532 2  233344444445553  4555  333221                      12346666888


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEEEEEec---CCe-EEEEEcCCCCce-EEecC--CCCceEEEEEecCCCEEEE
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGAR-VDYDA--PGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~-~~~~~--~~~~i~~~~~s~dg~~l~~  546 (1092)
                      +|+....+. -...+..+.|+|.. ..+|+-|-.   +.. -|+|-+++.... ..+..  ....+..=-|.|||..+..
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y  254 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY  254 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred             CCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence            887654443 55667778887653 234444322   221 366765543322 22221  2224555568999998876


Q ss_pred             Eec-CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----------------CeEEEEECCC
Q 001358          547 CGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNK  609 (1092)
Q Consensus       547 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~  609 (1092)
                      .+. .+..+..|.-+|+.+++.......     .......-++|+++++-=+.|                .-|++++++.
T Consensus       255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~  329 (386)
T PF14583_consen  255 DSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA  329 (386)
T ss_dssp             EEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred             EeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence            544 344466788899998876543332     234455667888777652222                2567788887


Q ss_pred             CceEEEEeCC--------CCCCCCceEEEccCCCEEEEEeC-CCeEEEEE
Q 001358          610 VQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE  650 (1092)
Q Consensus       610 ~~~~~~~~~~--------~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~  650 (1092)
                      +.........        .....-....|+|||++++..++ .|...||-
T Consensus       330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            6654322211        00011256899999999887765 56665554

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=5.1e-05  Score=78.27  Aligned_cols=250  Identities=12%  Similarity=0.099  Sum_probs=141.5

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .+.|.+|...|..++|||..+=|+..++.+..|+|.|+++...+..                   +..| ..+.+++|.-
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL  245 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence            4577889999999999998876789999999999999999877754                   3334 7899999998


Q ss_pred             CC-CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe------eCCCCcEEEEEEeCCCcEEEEECCC--Cce
Q 001358          407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR  477 (1092)
Q Consensus       407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~------s~d~~~l~l~s~~~d~~i~vwd~~~--~~~  477 (1092)
                      |. .+|..|...|.|.|||+...+.......-.-...+|..++.      .+-|.  +++....+  +..|++.-  +..
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL  321 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence            65 56667778999999999865432211111112234444433      23344  34444433  55666432  111


Q ss_pred             eEEEe-cCCcceEEEeecccCCccEEEEEecCCe---EE---E-EEcCCCCceEE-ecCC-CC------ceEEEEEecCC
Q 001358          478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK---IK---A-WLYDSLGARVD-YDAP-GL------GCTRMAYSANG  541 (1092)
Q Consensus       478 ~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~---i~---v-wd~~~~~~~~~-~~~~-~~------~i~~~~~s~dg  541 (1092)
                      ...++ +..+...++...+..+ ..|++.-.+.+   ++   . -|...+..+.. ...+ +.      .-..+.-.++.
T Consensus       322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            22111 2244455555544322 34444433211   00   0 01111111110 0000 00      01122234566


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 001358          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~  608 (1092)
                      ++++..+.   ..+.+.+||+.+++.++++....    +|..++... ++.-++..-.|..++||..+
T Consensus       401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence            66665543   46779999999999999887643    666665443 33334444455678887654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=0.00011  Score=83.27  Aligned_cols=207  Identities=15%  Similarity=0.175  Sum_probs=133.0

Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceee-
Q 001358          850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT-  922 (1092)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~-  922 (1092)
                      ++++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|+.     |+||+++..+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4566 67799999999999888643 3445777777766 555554445579999988765     9999998653333 


Q ss_pred             eeee---ecCC-CCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcC--Cceeeee-eccCCCcCEEEEEEecCCCEEE
Q 001358          923 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE--ELTCLKQ-WFPISSVPISQATFSCDCRMVF  994 (1092)
Q Consensus       923 ~~~~---~~~~-~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~--~~~~~~~-~~~~h~~~v~~l~fs~dg~~l~  994 (1092)
                      ..++   .... .......++.+++.|.+-+.+|+| .+|.|..+.-.  ...-.+. ....-..+|+.++|..|++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            3333   2111 111112468999999999999997 77888888532  1111111 1112378999999999998744


Q ss_pred             EEeCCCcEEEEECCCCce-EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001358          995 TSFVDGTLSIHEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus       995 t~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
                      .+..-..|.+|.+.+... .+...      .  ++  +..-|.++++.. ..|++++ +..|.+|+.++.++.|+..
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld------~--~G--~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD------N--NG--ISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec------c--CC--ccceeeecCCCC-ccEEEec-CceEEEEcCCCcceeeeec
Confidence            444456799999984331 21122      1  12  333477788632 2355553 5578999999988888654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=4.1e-05  Score=86.05  Aligned_cols=188  Identities=12%  Similarity=0.123  Sum_probs=129.6

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeee
Q 001358          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  923 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~  923 (1092)
                      ..++|++++   +++++-|+.+|.|++++... .. .+...|+..      ..+|.+++|||.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            456778885   47999999999999999874 33 344446554      56899999999999999999888653332


Q ss_pred             eeeecCCCCcCCCCCceEEEEecC-----CCEEEEEeCCcEEEEEcCCc-eeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358          924 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       924 ~~~~~~~~~~~~~~~v~~l~~s~d-----g~~la~~~d~~v~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      .-++         .++.+++++||     .+.+++|+...+.++.-.=. .........-.++|.++.|  .|.++|=++
T Consensus       109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence            2221         25889999998     45566654433777754311 1111123334789999998  477888887


Q ss_pred             CCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358          998 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus       998 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .+| |+|||+.++..+..+.+....+.    ....+..+.|.+  ...|+.| ...+|++..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence            665 89999999999888775442222    235556678886  3556555 67788888887

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.00042  Score=78.85  Aligned_cols=202  Identities=11%  Similarity=0.114  Sum_probs=136.3

Q ss_pred             EEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc----
Q 001358          808 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS----  876 (1092)
Q Consensus       808 ~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~----  876 (1092)
                      -++++.+..++.|+ +|.|.+.+- ..+.++.++.+... +..+-... +..+|++.+.|+     .++||+++.-    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            35678888888887 688877774 34555777777766 44444443 557888877775     5899998643    


Q ss_pred             --eee--Eeecc-----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358          877 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       877 --~~~--~~l~~-----h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                        .++  .++.+     ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+.    .+|+.+++..|
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence              223  12222     346788999999999999999999998885432221112222222332    36999999999


Q ss_pred             CCE-EEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee
Q 001358          948 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       948 g~~-la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      ++. +.++.-..|.+|.+....+.......|+....|..|++....+++++ +..+.+|+.+.......|
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            988 45567788999999844433444666788999999887655355454 457999999855444333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.11  E-value=0.0038  Score=72.52  Aligned_cols=138  Identities=12%  Similarity=0.109  Sum_probs=80.0

Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCC------ceE--EEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------~i~--~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      ..++.++.++.+.-.|..+++....+.....      .+.  .+++ .++..++.+..    ++.|+-+|..+|+.+-.+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~----~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTF----DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence            3566777788888889888877766544322      000  1111 12245555543    667999999999998776


Q ss_pred             eecccc--CCceE-EEEEcCCCCEEEEEe---------CCCeEEEEECCCCceEEEEeCCCCCC----------------
Q 001358          572 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLP----------------  623 (1092)
Q Consensus       572 ~~~~~~--~~~v~-~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~----------------  623 (1092)
                      ......  ...+. ...+.  +..++.++         .+|.++.+|..+|+.+..........                
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            643300  00011 11122  24555554         36889999999999988776531100                


Q ss_pred             --CC-ceEEEccCCCEEEEEeCCC
Q 001358          624 --EN-PRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       624 --~v-~~v~~s~~~~~l~~~~~dg  644 (1092)
                        .+ ...++.+.+..+++++.++
T Consensus       215 g~~vw~~pa~d~~~g~V~vg~~~g  238 (488)
T cd00216         215 GGTSWASPTYDPKTNLVYVGTGNG  238 (488)
T ss_pred             CCCccCCeeEeCCCCEEEEECCCC
Confidence              01 1345555567777777665

The alignment model contains an 8-bladed beta-propeller.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.09  E-value=6.5e-05  Score=85.40  Aligned_cols=187  Identities=14%  Similarity=0.116  Sum_probs=142.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                      .++.|+....+..+|+.+.+..+...-....|.-|+.    +++++.+|...|+|.+-|..+.+.+.++..|.+.+.  .
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D  222 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D  222 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence            5777888888999999999888777655555766654    668999999999999999999999999999998885  4


Q ss_pred             EecCCCEEEEEecCCC-----CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCC-
Q 001358          537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK-  609 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~-  609 (1092)
                      |+-.|+.|++||.+..     .|..|.+||+++.+.+..+.-+.   ++ .-+.|.|. ...+++++..|...+-|..+ 
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence            5667999999987553     35678999999888776665544   22 45667776 35678888899999988432 


Q ss_pred             Cce-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       610 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      +.+ ......+...+.+..++++++|..++.+..+|.|.+|.-..
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            111 12222222234588999999999999999999999998443

>smart00668 CTLH C-terminal to LisH motif

Probab=98.08  E-value=2e-06  Score=66.34  Aligned_cols=53  Identities=34%  Similarity=0.595  Sum_probs=42.6

Q ss_pred             hHHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHhHHhhhhhhccCCCH
Q 001358           37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI   90 (1092)
Q Consensus        37 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~   90 (1092)
                      ++..++++|++|+|++|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence            478899999999999999999876433222222 48999999999999998764

Alpha-helical motif of unknown function.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.08  E-value=0.00082  Score=78.38  Aligned_cols=222  Identities=14%  Similarity=0.100  Sum_probs=121.6

Q ss_pred             CCeEEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-CcEEEEE
Q 001358          844 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD  914 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~i~iwd  914 (1092)
                      ..+.+.++|| +++.+|...      .|+  .+.+++.. +.......+.  ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678999999 777776654      244  45555542 3332223332  37889999999988887643 2233332


Q ss_pred             cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEE---EEcCCcee-e---eeeccCCCcCEEEEEEe
Q 001358          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS  987 (1092)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~l---wd~~~~~~-~---~~~~~~h~~~v~~l~fs  987 (1092)
                      -..........+..........+.|..+.|||||+.+|...+++|++   -....|+. +   ..+..+-...+.++.|.
T Consensus       426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            21111000000110000001123699999999999999966788887   44445541 1   11122223446889999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001358          988 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus       988 ~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
                      .++.++ ++..++...+|.+.-............+.     ..  ..+++..|   ..+.++..+|.+.+=.-......|
T Consensus       506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~-----~~--v~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W  574 (591)
T PRK13616        506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLS-----AP--VVAVAASP---STVYVTDARAVLQLPNSDSGDQYW  574 (591)
T ss_pred             cCCEEE-EEecCCCCceEEEecCCccccccCCCCcc-----Cc--eEEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence            999855 55555555566554332221111111111     11  24566665   356677777765555444556679


Q ss_pred             ccCCCCCcccCCC
Q 001358         1068 AVLPPDEIVGDQP 1080 (1092)
Q Consensus      1068 ~~~~~~~~~~~~~ 1080 (1092)
                      ...|+..-.+..|
T Consensus       575 ~ev~~l~g~~~~p  587 (591)
T PRK13616        575 REVPGLMGPRAAP  587 (591)
T ss_pred             eECccccCCCccc
Confidence            8888776555444

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00043  Score=78.24  Aligned_cols=186  Identities=13%  Similarity=0.142  Sum_probs=124.2

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .+.+.+++  ++.++.|+.+|.+++++.+....                        +. +   .|...      ..+|.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Ge   84 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGE   84 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCc
Confidence            34444443  56688888999999987654310                        00 0   02211      55899


Q ss_pred             EEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCc--eeeEeeccccCC
Q 001358          816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKR  888 (1092)
Q Consensus       816 ~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~--~~~~~l~~h~~~  888 (1092)
                      ++++++ ||+|.|-.+.+.+...++. ...++.+++++|+    ..+.+++|+.-| +.++.-.--  +.-..+..-.++
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~  162 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP  162 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence            999999 6999999998888777665 4568999999993    256888899888 777753321  111134456789


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcC
Q 001358          889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  965 (1092)
Q Consensus       889 V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~  965 (1092)
                      |.++.|.  |+++|-++.+| |+|||+..+....  .++.+............+.|.++.+ |+.|...+|+|..+.
T Consensus       163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             eEEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            9999995  88999999888 9999999865333  2222222222122345677766655 566777788888877

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.01  E-value=0.032  Score=64.99  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccc
Q 001358          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      |.+.-+|+.+++..-+..............  .+.+++.++.+|.++.+|.++|+.+.+.+-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            568888999998887665333222222222  3447777888999999999999999887643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.98  E-value=0.00064  Score=75.89  Aligned_cols=198  Identities=19%  Similarity=0.156  Sum_probs=118.6

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCc---CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      ....+.+..-...+..-+|+|+++.+....-..   ..+.++|+++++.....+                    -.+.-.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~  241 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNG  241 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccC
Confidence            344455665566888899999998644442222   359999999998765433                    223334


Q ss_pred             EEEECCCCCEEEEEe-CCC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--EEEEECCCC
Q 001358          401 RVVWSPDGSLLGVAY-SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG  475 (1092)
Q Consensus       401 ~l~~spdg~~las~~-~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~  475 (1092)
                      ..+|||||++||.+. .||  .|.+.|+.++...+    +..-.+.-+.=.|+|||++ ++.+.+..|.  |.+.|++.+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence            568999999998774 444  47777887765222    3333333446789999996 3344444554  556676665


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEecC-Ce--EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .. ..+......-.  ....++||.+++..+.. |.  |.+.|+.+... ..............+.++|+.++..+..
T Consensus       317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence            54 33322221111  23346788888777643 44  55555555543 2222223334456788899888876643

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.96  E-value=0.013  Score=67.03  Aligned_cols=252  Identities=14%  Similarity=0.084  Sum_probs=138.4

Q ss_pred             CceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+...++||||++++.+-+..|    ++++.|+++|+.+.. .+                 ..  ..-..++|.+|++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEE
Confidence            3446789999997655545544    499999999976643 11                 11  112239999999988


Q ss_pred             EEEeCC-----------CEEEEEEccCCCCccceEEecccccc--eeEEEeeCCCCcEEEEEEeCC--CcEEEEECCCC-
Q 001358          412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG-  475 (1092)
Q Consensus       412 as~~~d-----------~~i~iwd~~~~~~~~~~~~l~~h~~~--v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~-  475 (1092)
                      +....+           ..|+.|++.++..-. ...+.+....  ...+..++|++++++.+.+..  ..+.+-|...+ 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence            776432           247777877654321 1234443333  567889999996333333322  35777788775 


Q ss_pred             ---ceeEEEecCCcceE-EEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecCCCEEE
Q 001358          476 ---SRTYSFEGHGAPVY-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       476 ---~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                         .....+......+. .+...   ++.+++...   ..+.|...++.....   ...+..+...+.-..+...+.+|+
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence               23344433333333 33321   333444332   235676677777653   224444444333334445566666


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE--Ee--CCCeEEEEECCCCceEE
Q 001358          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~s--~dg~i~iwd~~~~~~~~  614 (1092)
                      .... .++...|++++...+.....+....  .+.|..+...++++.+..  .|  .-++++.||+.+++...
T Consensus       341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  341 LSYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             EEEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             EEEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            5543 3457789999998455555554443  355666666666665543  22  34678888988877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.94  E-value=0.013  Score=62.87  Aligned_cols=228  Identities=12%  Similarity=0.049  Sum_probs=112.7

Q ss_pred             EEECCCCCEEEEEeC---CCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358          402 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       402 l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      =+|.+||+.|+.++.   ...+.+-|+++++..+    |.... ........+|+++  .++-......|+--|+++.+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE  114 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence            367899988887765   4468888999976443    33332 2233466788888  454444556888899999887


Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEec----------------------CCeEEEEEcCCCCceEEecCCCCceEEE
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~----------------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                      ...+......+-...+..+.|+..++..-.                      ...|.-.|+.+++....+. ....+..+
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~  193 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV  193 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence            666666666666666665667666554321                      1234445666655444433 44567788


Q ss_pred             EEecCCCE-EEEEecCCCCce---eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-----CCCeEEEEE
Q 001358          536 AYSANGRR-LFSCGTSKEGES---FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWD  606 (1092)
Q Consensus       536 ~~s~dg~~-l~~~~~~~~~~~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-----~dg~i~iwd  606 (1092)
                      .|+|.... |..|.. +..+.   .|.+.+.. |...+.+..+. ....+..=.|.|||..+.--+     .+..|.-+|
T Consensus       194 ~fsP~dp~li~fCHE-Gpw~~Vd~RiW~i~~d-g~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d  270 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHE-GPWDLVDQRIWTINTD-GSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYD  270 (386)
T ss_dssp             EEETTEEEEEEEEE--S-TTTSS-SEEEEETT-S---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-
T ss_pred             ccCCCCCCEEEEecc-CCcceeceEEEEEEcC-CCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeC
Confidence            99996554 445543 32222   34444433 33333333322 123455557999998876522     345677788


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      +.+++.......+    .....-.++||++++-=+.|
T Consensus       271 ~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  271 PDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence            8887665433322    23345556788877654444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.0054  Score=67.87  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=79.8

Q ss_pred             ceEEEEecC-CCEEEEE-----eCCc----EEEEEcCCce--eeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001358          939 ETHIQFHKD-QTRFLLV-----HETH----LAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       939 v~~l~~s~d-g~~la~~-----~d~~----v~lwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd 1006 (1092)
                      ..++.||-. ...+.+.     .+|.    -.+|+....+  ++..........|.+++++|+...|+.|+.||+|.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            467777763 3334331     2332    5577776553  23333345688999999999999999999999999999


Q ss_pred             CCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1007 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1007 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ...+.....-            ..+.|..++||| ++..+++|+..|.+.+||+.
T Consensus       288 ~~~~~t~~~k------------a~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  288 TTRGVTLLAK------------AEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCCeeeeee------------ecccceEEEEcC-CCcEEEEEcCCceEEEEEee
Confidence            9888444221            124566799999 58999999999999999974

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.91  E-value=0.0033  Score=69.54  Aligned_cols=245  Identities=13%  Similarity=0.157  Sum_probs=132.2

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      .|..+.|+++...++++...|.+.+|.+..++.........                            -..+.+.+-  
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~----------------------------~~~~~~~~~--   52 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP----------------------------DLDYNFRRF--   52 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------------S---
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc----------------------------ccCcccccc--
Confidence            47889999998899999999999999988764321000000                            000000000  


Q ss_pred             EEEEEeCCeEEEEEcCC---------ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe--ecc
Q 001358          816 YLFSASGGVISLYIVMT---------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG  884 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~---------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l~~  884 (1092)
                         ...++.-.+-|+..         ......+....++|++++.|.  =-++|+|..+|.+.|.|++....+..  +..
T Consensus        53 ---~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~  127 (395)
T PF08596_consen   53 ---SLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRE  127 (395)
T ss_dssp             ----GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred             ---cccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence               00000111112111         122333444578999999985  44999999999999999987776544  222


Q ss_pred             ------ccCCeEEEEEcC-----CC---CEEEEEeCCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEE-EecC
Q 001358          885 ------HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQ-FHKD  947 (1092)
Q Consensus       885 ------h~~~V~~l~~sp-----dg---~~l~s~s~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~-~s~d  947 (1092)
                            ....|+++.|+.     |+   -.|+.|...|.+.+|.+--  +..-..........+.   +.|..+. |+.+
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~  204 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINAD  204 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETT
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECC
Confidence                  334688888872     33   5688889999999998752  1111111111111111   2344443 4322


Q ss_pred             ---------------------CCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEE-----ecCCCEEEEEeCCCc
Q 001358          948 ---------------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-----SCDCRMVFTSFVDGT 1001 (1092)
Q Consensus       948 ---------------------g~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~f-----s~dg~~l~t~s~Dg~ 1001 (1092)
                                           ..+++++++..++++...+.+...... ........+++     ...+..|++-..+|.
T Consensus       205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~  283 (395)
T PF08596_consen  205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGS  283 (395)
T ss_dssp             T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSE
T ss_pred             CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCc
Confidence                                 125666889999999998887766644 22233344555     236778888999999


Q ss_pred             EEEEECCCCceEEeeccc
Q 001358         1002 LSIHEASNLEVQCRILST 1019 (1092)
Q Consensus      1002 i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      |+++.+...+.+......
T Consensus       284 i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  284 IRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             EEEEETTT--EEEEEE-S
T ss_pred             EEEEECCCchHhhcccCC
Confidence            999999999999887743

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.91  E-value=0.0056  Score=71.06  Aligned_cols=248  Identities=13%  Similarity=0.107  Sum_probs=139.7

Q ss_pred             EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCCEEEEEe---------CCC
Q 001358          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAY---------SKH  418 (1092)
Q Consensus       350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~~---------~d~  418 (1092)
                      +..++.++.|.-+|.++|+.+-.+...                 .+...-..+.-+|  .+..+++++         .++
T Consensus       113 V~v~~~~g~v~AlD~~TG~~~W~~~~~-----------------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g  175 (488)
T cd00216         113 VFFGTFDGRLVALDAETGKQVWKFGNN-----------------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG  175 (488)
T ss_pred             EEEecCCCeEEEEECCCCCEeeeecCC-----------------CCcCcceEecCCCEEECCEEEEeccccccccCCCCc
Confidence            566778899999999999987543211                 1100000011111  124444443         357


Q ss_pred             EEEEEEccCCCCccceEEecc----------------cc-cce-eEEEeeCCCCcEEEEEEeCCC---------------
Q 001358          419 IVQLYAYHGGSDARQQLEIDA----------------HV-GNV-NDLAFSAPCKQISVITCGDDK---------------  465 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~----------------h~-~~v-~~~~~s~d~~~l~l~s~~~d~---------------  465 (1092)
                      .+.-+|.++|+.+-.......                +. ..| ...++.+.+.  .++.++.++               
T Consensus       176 ~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         176 ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             EEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCCC
Confidence            788889988875542211100                00 011 1234444455  456565454               


Q ss_pred             ---cEEEEECCCCceeEEEecCCcceE------EEeecc--cCCc---cEEEEEecCCeEEEEEcCCCCceEEecCCCCc
Q 001358          466 ---TIKVWDAVTGSRTYSFEGHGAPVY------SLCPHA--KENI---HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG  531 (1092)
Q Consensus       466 ---~i~vwd~~~~~~~~~~~~~~~~v~------~i~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~  531 (1092)
                         .|.-.|.++|+.+..++.-.....      ...+..  .-++   ..++.++.+|.+...|..+++.+.......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               799999999999987642111110      001100  0122   267888899999999999998877654321  


Q ss_pred             eEEEEEecCCCEEEEEecC--------------CCCceeEEEEeCCCCeEEEEEeeccccC-----CceEEEEEcCCCCE
Q 001358          532 CTRMAYSANGRRLFSCGTS--------------KEGESFLVEWNESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQ  592 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~  592 (1092)
                       ..++.+|  ..++.....              ...++.+.-.|..+|+.+-.........     .+...-.....+..
T Consensus       332 -~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~  408 (488)
T cd00216         332 -QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNL  408 (488)
T ss_pred             -cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCe
Confidence             1133334  333332110              1235678899999998876665431000     01111111124578


Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      +++++.||.++.+|..+|+.+...+....
T Consensus       409 v~~g~~dG~l~ald~~tG~~lW~~~~~~~  437 (488)
T cd00216         409 VFAGAADGYFRAFDATTGKELWKFRTPSG  437 (488)
T ss_pred             EEEECCCCeEEEEECCCCceeeEEECCCC
Confidence            89999999999999999999998876543

The alignment model contains an 8-bladed beta-propeller.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.89  E-value=0.0052  Score=62.87  Aligned_cols=197  Identities=9%  Similarity=0.094  Sum_probs=112.2

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +.|.+-.++++.++|.|+.+.|+|+....+.|...+. +|+.++...                 +.+ -+..-.|++..+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~   75 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN   75 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence            5677777789999999997778999998899988886 477776533                 333 357788999988


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccce-----EEec---ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC---Cc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS  476 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~l~---~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~  476 (1092)
                      +.++++--.++.+.++++.........     ..+.   .+...+-.++|.+.++.  |+.+-...-..++.+..   +.
T Consensus        76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~  153 (248)
T PF06977_consen   76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF  153 (248)
T ss_dssp             TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred             CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence            888887667899999998543211111     1111   24456899999999885  44444555555665443   22


Q ss_pred             eeEEE--------ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEec
Q 001358          477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA  539 (1092)
Q Consensus       477 ~~~~~--------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~  539 (1092)
                      .+...        ......+.++++++. .+++++....+..|..+| ..++.+..+....         .....|+|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            22111        113345678888765 557888888888899888 4444433332222         2467899999


Q ss_pred             CCCEEEEE
Q 001358          540 NGRRLFSC  547 (1092)
Q Consensus       540 dg~~l~~~  547 (1092)
                      +|+..++.
T Consensus       232 ~G~LYIvs  239 (248)
T PF06977_consen  232 DGNLYIVS  239 (248)
T ss_dssp             T--EEEEE
T ss_pred             CCCEEEEc
Confidence            99766664

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.88  E-value=0.0054  Score=62.72  Aligned_cols=216  Identities=12%  Similarity=0.104  Sum_probs=116.7

Q ss_pred             EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccc-cCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 001358          837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV  915 (1092)
Q Consensus       837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~  915 (1092)
                      +.+.+-...+..++|.|+++.++++....+.|..++.+ |+.+.++.-. .+..-.|++..++.++++.-+++.+.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            34555666799999999557788888888999989874 7877776532 356888999988877777667999999998


Q ss_pred             CCCc--eeee--eeeecCCCCcCCCCCceEEEEecCCCEEEEEeC-CcEEEEEcCC---ceeeee-----e--ccCCCcC
Q 001358          916 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEE---LTCLKQ-----W--FPISSVP  980 (1092)
Q Consensus       916 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d-~~v~lwd~~~---~~~~~~-----~--~~~h~~~  980 (1092)
                      ....  ....  ..+..... ......+..++|.|.++.|.++.+ .-..||.+..   ...+..     +  .......
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            4422  1111  11121111 111135899999998777777544 4456666653   111110     0  1113556


Q ss_pred             EEEEEEecC-CCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001358          981 ISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus       981 v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      +++++|.|. |.+++.+.....|..+| ..|+.+..+....-...- ...--.+--++++| +| .|...+.-+..++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-SKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG--SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-ccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence            888999885 45666677778899999 667777666533311000 01111245688998 34 55556677776665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.84  E-value=0.0039  Score=69.93  Aligned_cols=225  Identities=10%  Similarity=0.067  Sum_probs=118.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +......+..+.++|+|++++++ .+|.-.|+.....   +.     ...+.-...+|.+.++   +++-...++|.|+.
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK   95 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence            44455668899999999999995 5666777773321   21     1234556788999665   66666688899974


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      --+.+....+... ..+..+..     |.+|...+. +.|.+||+.+.+.+..+...  +|..+.|+++|.+++..+.  
T Consensus        96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~--  164 (443)
T PF04053_consen   96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK--  164 (443)
T ss_dssp             TTEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--
T ss_pred             cCccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC--
Confidence            2233332333221 12333321     455555544 48999999999888877754  3889999999999998873  


Q ss_pred             CCceeEEEEeCCCC-----------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358          552 EGESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                         ..+++++....           .....+....   ..|.+.+|..+  .++-.+.. .++.+--.....+..+.   
T Consensus       165 ---~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld---  232 (443)
T PF04053_consen  165 ---DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLD---  232 (443)
T ss_dssp             ----SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-S---
T ss_pred             ---CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcC---
Confidence               33666654332           0222222212   57888888866  44444444 66663322222333332   


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          621 GLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                        ..+.-+.+.++.+.+.....++.+..+.+..
T Consensus       233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             --S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             --CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence              2366777888778888888888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.83  E-value=0.0007  Score=74.59  Aligned_cols=115  Identities=15%  Similarity=0.178  Sum_probs=82.9

Q ss_pred             CCCeeEEEEecC-CCEEEEEe-----CCe----EEEEEcCCceeeEE---ecCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001358          802 QEAVPCFALSKN-DAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI  868 (1092)
Q Consensus       802 ~~~v~~~~~s~d-g~~l~~~s-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  868 (1092)
                      +....++.||.. ...+.+..     +|.    -++|++...+..+.   --.....+.+++++| +...|+.|+.||+|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            344567777763 33343332     233    56777765543221   123667899999999 88999999999999


Q ss_pred             EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358          869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      .+||...+..  .+..+.-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            9999887632  233345567889999999999999999999999987643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.82  E-value=0.0034  Score=70.18  Aligned_cols=193  Identities=15%  Similarity=0.114  Sum_probs=121.1

Q ss_pred             ecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEe--cCCcceEEEeecccCCccEE-EEEecCCeE
Q 001358          437 IDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFI-FSISVDGKI  511 (1092)
Q Consensus       437 l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i  511 (1092)
                      +..-...+..-+|+|+++.+..++-...+  .+.++|+++++....+.  ++..   .-.|  ++||+.| ++...||..
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~---~P~f--spDG~~l~f~~~rdg~~  262 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNG---APAF--SPDGSKLAFSSSRDGSP  262 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccC---CccC--CCCCCEEEEEECCCCCc
Confidence            33444567778999999975444444444  59999999887655443  3322   2244  4566554 556677775


Q ss_pred             EE--EEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358          512 KA--WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       512 ~v--wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1092)
                      .+  .|+....... +....+.-..-.|+|||+.++..+ ++.+.-.|++.+...+...+......   .. ..-.|+||
T Consensus       263 ~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~---~~-~~p~~Spd  336 (425)
T COG0823         263 DIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG---GN-SNPVWSPD  336 (425)
T ss_pred             cEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC---CC-cCccCCCC
Confidence            54  5665555333 333333334678999999999886 55667789999988777643333222   22 26679999


Q ss_pred             CCEEEEEeC-CCe--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC
Q 001358          590 KDQILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1092)
Q Consensus       590 ~~~l~~~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d  643 (1092)
                      |++++..+. +|.  |.+.|+.++.....+....   ....-.|.++++.+...+..
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence            999988663 344  6667776666544443322   23456778888877766554

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.80  E-value=3e-05  Score=51.97  Aligned_cols=32  Identities=34%  Similarity=0.552  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001358            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1092)
Q Consensus         4 ~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~   35 (1092)
                      .++++.++|+|||...||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.76  E-value=0.0074  Score=66.79  Aligned_cols=254  Identities=13%  Similarity=0.117  Sum_probs=134.7

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCcee------ee------------eeeeeeccccc------ceeEEee
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL  391 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~------~~------------~~~~~d~~~~~------~~~~~~~  391 (1092)
                      .|+++.|+++.. -||+|...|.|.||.+...+.-.      ..            .-.+-|+....      ......+
T Consensus         3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            588999999976 48888999999999876532221      00            12233443221      2233445


Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecc------cccceeEEEeeC-----CC-CcEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSA-----PC-KQISVI  459 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~v~~~~~s~-----d~-~~l~l~  459 (1092)
                      +....++|++++.| |=-++|.|+.+|.+.|.|+.+...+.. ..+..      ....|+++.|+-     |+ ..+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            66678999999998 677999999999999999976654432 12222      334688888862     22 124788


Q ss_pred             EEeCCCcEEEEECC--C-Ccee----EEEecCCcceEEEeecccCCc-------------------cEEEEEecCCeEEE
Q 001358          460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA  513 (1092)
Q Consensus       460 s~~~d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~i~~~~~~~~-------------------~~l~s~~~dg~i~v  513 (1092)
                      .|...|.+.+|.+.  . +...    .....+.++|..+......+|                   .-++....+..+|+
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999764  1 2221    112246677766653311111                   22455556788999


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEe-----cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEc
Q 001358          514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD  587 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~  587 (1092)
                      +...+.+..............+++-     ..+..|++...    ++.++++.+..-+.+..+.-... ....+....++
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            9888776655544332334445553     34556666654    66799999988887776665320 11223345566


Q ss_pred             CCCCEEEEE
Q 001358          588 TAKDQILAA  596 (1092)
Q Consensus       588 ~~~~~l~~~  596 (1092)
                      ++|..++-.
T Consensus       316 ~~Gdi~~~~  324 (395)
T PF08596_consen  316 RNGDIFYWT  324 (395)
T ss_dssp             TTS-EEEE-
T ss_pred             CCCCEEEEe
Confidence            666644444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.73  E-value=0.026  Score=64.67  Aligned_cols=249  Identities=13%  Similarity=0.115  Sum_probs=128.1

Q ss_pred             cEEEEEECCCCCEEEEE-eCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-C--------
Q 001358          398 SVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D--------  463 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~--------  463 (1092)
                      .+..+++||||+++|.+ +..    ..++++|+++|+.+..  .+...  ....+.|.+|++. ++.+.. .        
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~  199 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG  199 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence            44568899999999976 333    3699999999864432  11111  1223999999985 333332 2        


Q ss_pred             -CCcEEEEECCCCcee--EEEecCCcceEEEeecccCCccEEEEEecCC----eEEEEEcCCC----CceEEecCCCCce
Q 001358          464 -DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGLGC  532 (1092)
Q Consensus       464 -d~~i~vwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~----~~~~~~~~~~~~i  532 (1092)
                       ...|+.|.+.++..-  ..+.........+....+.|+++++..+..+    .+.+.++...    .....+......+
T Consensus       200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~  279 (414)
T PF02897_consen  200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV  279 (414)
T ss_dssp             CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred             CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence             224788888776433  4444444443223333366777776544332    3666677664    2233333233333


Q ss_pred             EEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEE-EeCCC--eEEEEE
Q 001358          533 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIWD  606 (1092)
Q Consensus       533 ~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg--~i~iwd  606 (1092)
                      ....-+. +..++..+..+...+.|...++.....   ...+..+. ....+..+..  .+++|+. ...++  .|++++
T Consensus       280 ~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~  355 (414)
T PF02897_consen  280 EYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVYD  355 (414)
T ss_dssp             EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEEE
Confidence            3333233 443333333444567788888877653   22444333 0113444444  4455555 34443  578899


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCCe
Q 001358          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS  656 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~~  656 (1092)
                      +..+.....+..... ..|..+...+++..+.....    -+++..||+.+++.
T Consensus       356 ~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  356 LDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             TT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             CCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            984555555554432 22344444455554443322    26777788887754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.71  E-value=5.5e-05  Score=46.58  Aligned_cols=27  Identities=33%  Similarity=0.642  Sum_probs=24.5

Q ss_pred             HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001358            6 KDLVFLILQFLNEEGFTESAHMLERES   32 (1092)
Q Consensus         6 ~~~~~li~q~L~~~G~~~s~~~L~~Es   32 (1092)
                      +++-+||++||.+.||.+||++|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            578899999999999999999999997

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.71  E-value=0.023  Score=63.95  Aligned_cols=199  Identities=16%  Similarity=0.150  Sum_probs=109.6

Q ss_pred             EEEecCCCEEEEEeCC------------eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001358          808 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       808 ~~~s~dg~~l~~~sdg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                      ++.+|.|..+|...+.            .|+||+.. |+.+..+.=..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence            4556666666666544            58889875 555655443348999999997 44 555677899999999863


Q ss_pred             ce------eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-eeeeeec-CCCCcC--CCCCceE-EEE
Q 001358          876 SE------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-TCRSLQT-PDGVMT--LAPSETH-IQF  944 (1092)
Q Consensus       876 ~~------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~-~~~~~~~-~~~~~~--~~~~v~~-l~~  944 (1092)
                      ..      .+....-....+....+..+|-.+.  ..++.+.+-  .+.... ..+.+.. +.....  ....... ..+
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence            22      1111111222233334444553333  334433333  222111 0011111 110000  0001111 335


Q ss_pred             ecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          945 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       945 s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      +.+....+. ..++.+.+.+....+.    . ...+++..++.||+|++||.-..+|.+.+...+-.+..+.+..
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            555554444 4455666454432211    1 1246899999999999999999999999998877777777663

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.70  E-value=0.12  Score=60.20  Aligned_cols=105  Identities=10%  Similarity=-0.030  Sum_probs=62.7

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccC-Cce-------EEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQH-NSV-------SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~-~~v-------~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      .+.|+-+|..+|+.+-.+....... ...       ..+++  .+..++.++.|+.+.-.|..+|+.+.......... -
T Consensus        78 ~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~-~  154 (527)
T TIGR03075        78 YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKA-G  154 (527)
T ss_pred             CCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecccccccc-c
Confidence            3458888998988876665321000 000       01122  23568888899999999999999987765432110 0


Q ss_pred             ceEEEcc--CCCEEEEEeC------CCeEEEEECCCCCeeeecc
Q 001358          626 PRICFNK--NGTLLAVIAN------ENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       626 ~~v~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ..+.-+|  .+..++++..      +|.|.-+|..+++.+-...
T Consensus       155 ~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       155 YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            0111112  1334555442      6899999999998776654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.013  Score=65.48  Aligned_cols=206  Identities=13%  Similarity=0.159  Sum_probs=145.3

Q ss_pred             eeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC---CCeEEEEEcCCceee
Q 001358          805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSEVI  879 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~~~  879 (1092)
                      ...+++++++..+....  ++.|.+.|..+.+......... ....++++| +++.+.++..   ++.+.+.|..+++..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            45678888888665554  5889999988777766654322 667899999 6656655554   689999999998888


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eC
Q 001358          880 SKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE  956 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d  956 (1092)
                      .....-..+ ..++++|+|+.+..+ ..++.|.+.|........    ...............++++|+|.++.+.  .+
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec----cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            775543344 889999999966555 478899999987744221    1111111112245789999999987763  22


Q ss_pred             --CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceEEeec
Q 001358          957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       957 --~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-g~i~vwd~~~~~~~~~~~ 1017 (1092)
                        +.+...|..++.........-......+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus       229 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         229 GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence              5899999988877765222211156678999999998887444 889999999988876665

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.68  E-value=0.0094  Score=66.93  Aligned_cols=218  Identities=17%  Similarity=0.184  Sum_probs=119.7

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 001358          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1092)
                      ...+..+.++|+|++++++++|...|+.....+....     +....++|.+ .++ +|+-...++|.|+.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence            3446789999999999999999999999655554332     3345788988 564 56666688999974333333233


Q ss_pred             eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEE
Q 001358          882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI  961 (1092)
Q Consensus       882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~l  961 (1092)
                      +... ..+..+-.   |.+|...+.+ .|.+||+++++     .+....-.     .|..+.||++|.++|...+..+.|
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence            3321 23444433   8888877665 79999999865     33333321     378999999999999988889998


Q ss_pred             EEcCCc-----------eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--EEeeccccccCCCCcc
Q 001358          962 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV--QCRILSTAYLRPTTSC 1028 (1092)
Q Consensus       962 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 1028 (1092)
                      ++....           ..+.. ...-...|.+.+|-.| -++.|. .. .++.  +.+|+.  ++.+.           
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~-~~E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld-----------  232 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFEL-IHEISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD-----------  232 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEE-EEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred             EEecchhcccccccCchhceEE-EEEecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------
Confidence            886533           01111 1111568899999877 444444 33 6776  455543  22222           


Q ss_pred             CcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1029 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .+++.  +.+.|. .+.+.....|+.|..+.++
T Consensus       233 ~~~yl--lgy~~~-~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  233 KPLYL--LGYLPK-ENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             S--EE--EEEETT-TTEEEEE-TT--EEEEE--
T ss_pred             CceEE--EEEEcc-CCEEEEEECCCCEEEEEEC
Confidence            22443  344442 4688888899999888775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.63  E-value=0.048  Score=61.43  Aligned_cols=231  Identities=12%  Similarity=0.080  Sum_probs=111.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc---cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE-C
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD-A  472 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd-~  472 (1092)
                      +.|.++.|+.+.+++ +...||.++++|+.+....   .......-....+.+..+..+|-  .++++  ++.+.+-+ .
T Consensus        81 ~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence            799999999865554 5569999999998743200   00001111122233334444442  33333  44444433 2


Q ss_pred             CCCceeEEE---ecCCc------ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCE
Q 001358          473 VTGSRTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       473 ~~~~~~~~~---~~~~~------~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      ......+.+   .+...      ....+ .....+....+....++.+.+.+-.....    ....+++..+++||+|++
T Consensus       156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~  230 (410)
T PF04841_consen  156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF  230 (410)
T ss_pred             cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence            211111111   11000      00000 01122334445555555565443222111    112458999999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      ++....    ++.+.+....-.+....+....  ......+.|..+...++.-  ...+.+.....              
T Consensus       231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--------------  288 (410)
T PF04841_consen  231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGPDG--------------  288 (410)
T ss_pred             EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------
Confidence            998865    4557777766555555555442  2455666676553222221  22333332111              


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                        ..+.|.-++..++..-.|| +||.....-..++....
T Consensus       289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~  324 (410)
T PF04841_consen  289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPD  324 (410)
T ss_pred             --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCH
Confidence              2244444444444444454 77776665555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.62  E-value=0.00047  Score=76.83  Aligned_cols=209  Identities=16%  Similarity=0.084  Sum_probs=127.6

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358          801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      +...+.--+++..+++++.|++ |.+++|+-..++....- .+..+.+....+|+ +..++|.|+..|.|.++-+..+..
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP  110 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence            4555666678889999999985 99999998777654332 23445566777888 888999999999999998876432


Q ss_pred             -----eEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358          879 -----ISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       879 -----~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                           +..+. .|...|++++|++|+..+.+|...|.|..-.++....... ..+...   .....|..+...  ..+|+
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~-~~q~il---~~ds~IVQlD~~--q~~LL  184 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLS-KSQEIL---SEDSEIVQLDYL--QSYLL  184 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcc-ccceee---ccCcceEEeecc--cceeh
Confidence                 12222 3788999999999999999999999999988887211111 111111   111234444443  33344


Q ss_pred             EEeCCcEEEEEcCCceeeeeeccCCCc-CEEEEEEecC----CCEEEEEeCCCcEEEEECC-CCceEEeec
Q 001358          953 LVHETHLAIYEAEELTCLKQWFPISSV-PISQATFSCD----CRMVFTSFVDGTLSIHEAS-NLEVQCRIL 1017 (1092)
Q Consensus       953 ~~~d~~v~lwd~~~~~~~~~~~~~h~~-~v~~l~fs~d----g~~l~t~s~Dg~i~vwd~~-~~~~~~~~~ 1017 (1092)
                      ++.--.-.+++++.+...+.-.....+ .-...+|-|.    .+-.+.++.-| .|+|..+ .|+...+..
T Consensus       185 VStl~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thq  254 (726)
T KOG3621|consen  185 VSTLTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQ  254 (726)
T ss_pred             HhhhhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeee
Confidence            333333445555433311110011111 2345666654    33445566665 6899876 455555443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.58  E-value=0.0041  Score=72.66  Aligned_cols=183  Identities=9%  Similarity=0.067  Sum_probs=105.0

Q ss_pred             CCeeEEEEecCCCEEEEEe-------CC--eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC--------
Q 001358          803 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------  865 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------  865 (1092)
                      ..+.+.++||||+.++...       +.  .+.+++.. +.. ..+.. ....+.-.|+| |+..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3567899999999988765       33  35555642 222 33322 22478899999 77777766432        


Q ss_pred             ----CeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE---EEcCCCceeeeeeeecCCCCcCCCCC
Q 001358          866 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS  938 (1092)
Q Consensus       866 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~  938 (1092)
                          +.+.+.+++.++...   ...+.|..+.|||||+.+|... ++.|.+   -....|+...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                234333444443322   2356799999999999998876 477777   444444421111111111111   23


Q ss_pred             ceEEEEecCCCEEEEEeCCc--EEEEEcCCceeeeeeccC--CCcCEEEEEEecCCCEEEEEeCCC
Q 001358          939 ETHIQFHKDQTRFLLVHETH--LAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       939 v~~l~~s~dg~~la~~~d~~--v~lwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
                      +.+++|.+++.+++...++.  +...++. |..... ..+  ...++..++-+++  .|+....+|
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecC-Cccccc-cCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            57899999999765544333  4444444 222221 122  2567777777663  355555566

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.18  Score=56.44  Aligned_cols=251  Identities=13%  Similarity=0.118  Sum_probs=162.1

Q ss_pred             cEEEEEECCCCCEEEEEeCCC-EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          398 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      ....++..|+|..+....... .+..-+..... ...  ....-...-..++.++++.. .+++...++.|.+.|..+.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~-~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNT-VTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccce-eee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence            556688889886665553222 44444444211 111  11111133457788888886 55666667899999988888


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      ..+...--. ....+++.  ++++.+..+..   ++++.+.|-.+............+ ..++++|+|..++.+.   ..
T Consensus       108 ~~~~~~vG~-~P~~~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~  180 (381)
T COG3391         108 VLGSIPVGL-GPVGLAVD--PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD  180 (381)
T ss_pred             eeeEeeecc-CCceEEEC--CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence            777664333 44456664  45555555444   688888888877776664333334 8899999999888775   23


Q ss_pred             ceeEEEEeCCCCeEEEEEeec--cccCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358          554 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      ++.|.+.|..+....+ -...  .........+.++|+++.+++....   +.+...|..++.........+.. ....+
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence            7789999977766653 1100  1012345678899999987775433   59999999998877763222222 35678


Q ss_pred             EEccCCCEEEEEeCC-CeEEEEECCCCCeeeecc
Q 001358          629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAAG  661 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~  661 (1092)
                      .++|+|+.+.+.... +.+.+.|..+........
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            999999999888554 888888888776555443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.038  Score=55.20  Aligned_cols=232  Identities=16%  Similarity=0.085  Sum_probs=136.9

Q ss_pred             EEEEecCCC-EEEEEe-CCe-EEEEEcCCceeeEEecCCCCC--eEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCc
Q 001358          807 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSPT--ATSLAFNPHDNNVIAIGMDD-----STILIYNARSS  876 (1092)
Q Consensus       807 ~~~~s~dg~-~l~~~s-dg~-i~iwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~  876 (1092)
                      .++++|.-. -++.+- -|+ ..++|..+.+.+.++....+.  --.=.||| ||.+|+..-.|     |.|-|||...+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence            567777543 344444 355 778999888777665433321  12346999 89998865443     68999999864


Q ss_pred             -eeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEE--------------------EEcCCCceeeeeeeecCCCCcCC
Q 001358          877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV--------------------WDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       877 -~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~i--------------------wd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                       +.+..+..|.-.-..+.+.+||+.|+.+.  |-|..                    .|-.++.......+.....+   
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~---  225 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ---  225 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh---
Confidence             56778888888888899999999998764  32333                    33333322221111111112   


Q ss_pred             CCCceEEEEecCCCEEEEE-e-----CCcEEEEEcCCceeeeeecc------CCCcCEEEEEEecCCCEEE-EEeCCCcE
Q 001358          936 APSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVF-TSFVDGTL 1002 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~-~-----d~~v~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~-t~s~Dg~i 1002 (1092)
                       ..+..++.-+||+.++.+ .     |---.+=-...++.+.-+-.      .-...|-+++..-+..+++ |+-..++.
T Consensus       226 -lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~  304 (366)
T COG3490         226 -LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRA  304 (366)
T ss_pred             -cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeE
Confidence             258889999999887763 1     11111111112222221110      1144667777776555555 44455678


Q ss_pred             EEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358         1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1003 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      .+||..+|.++.......    .      .  -++..   ..-|++.+.+|.++++.-
T Consensus       305 vi~da~tG~vv~~a~l~d----a------a--Gva~~---~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         305 VIWDAATGAVVSEAALPD----A------A--GVAAA---KGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             EEEEcCCCcEEecccccc----c------c--cceec---cCceEEecCCceEEeccc
Confidence            899999999884443111    1      1  12222   345888889999998854

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.46  E-value=0.071  Score=53.38  Aligned_cols=256  Identities=16%  Similarity=0.154  Sum_probs=139.7

Q ss_pred             ceEEEEEcCCCCE-EEEEeCCCe-EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECC
Q 001358          580 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP  652 (1092)
Q Consensus       580 ~v~~~~~~~~~~~-l~~~s~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~  652 (1092)
                      .-..++++|.... ++.+-.-|+ ..++|..+.+...++.........-.-+|||||.+|...-+|     |.|-|||..
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            3445778887544 344555554 578999988887777654332223346799999999876543     677788776


Q ss_pred             CC-CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCc
Q 001358          653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  731 (1092)
Q Consensus       653 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~  731 (1092)
                      .+ +.+..+..                                                                     
T Consensus       149 ~~fqrvgE~~t---------------------------------------------------------------------  159 (366)
T COG3490         149 EGFQRVGEFST---------------------------------------------------------------------  159 (366)
T ss_pred             cccceeccccc---------------------------------------------------------------------
Confidence            43 11111111                                                                     


Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEe-eecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358          732 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                       |.-....+.+.+||+.++.+..  -|..- ++...+...+   ...-.+.+.+..+|..+....++..-+...+..++.
T Consensus       160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld---sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~  233 (366)
T COG3490         160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD---SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI  233 (366)
T ss_pred             -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh---hcCccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence             2222334566677775554432  12221 1111111000   001123345556666566666654446778899999


Q ss_pred             ecCCCEEEEEe-CC----e-EEEEEcCCceeeEEecC-------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358          811 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       811 s~dg~~l~~~s-dg----~-i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      .+||..++.+- .|    . .-+=-...++.+.-+.-       ..+.|-+++.+.+++-..+|.-..+...+||..+|.
T Consensus       234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence            99998877663 11    1 11111223444333322       224677888887555555555556678899999998


Q ss_pred             eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358          878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      ++..-.--  ....++  +...-++..+.+|.+.++.
T Consensus       314 vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         314 VVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEeccccc--ccccce--eccCceEEecCCceEEecc
Confidence            76543211  111222  2344455566778787773

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.45  E-value=0.11  Score=55.55  Aligned_cols=231  Identities=11%  Similarity=0.125  Sum_probs=131.2

Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE----
Q 001358          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF----  481 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~----  481 (1092)
                      ..++.|+.|+.+| +.+++.........   . .+...|..+...++-+  .++.-+ |+.+.++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence            3588999999999 99999933222221   1 2333499999999887  444443 599999998754433211    


Q ss_pred             ----------ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-----CceEEecCCCCceEEEEEecCCCEEEE
Q 001358          482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       482 ----------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                                ......+...+......+...+......+|.+|.+...     ....++... ..+..++|.  ++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence                      11222344443112233344455555668998887763     222333333 567788888  566666


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--E
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T  615 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~  615 (1092)
                      +..     ....+.|+.++.....+.....         ...++..+.. +++.++++-  +..-.+.|. .|+...  .
T Consensus       154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST  224 (275)
T ss_pred             EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence            653     2378889987776554432210         0123333333 345566553  222233343 444333  3


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      +.-..   ....+++.  ..++++.+. +.|.||++.+++.++.+..
T Consensus       225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            33222   24556653  457776666 5699999999988887764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.41  E-value=0.0089  Score=70.72  Aligned_cols=149  Identities=12%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcC-----CCCEEEEEeCCCcEEEEEcCCCceeeeeeee
Q 001358          855 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ  927 (1092)
Q Consensus       855 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~sp-----dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~  927 (1092)
                      +..+|+.- .....|+-.|++.|+.+..+..|... |..++-..     +...-+.|=.+..+..||..-..   .+++.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence            45555543 34578999999999999999987754 55543221     12233456667779999987532   11222


Q ss_pred             cCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          928 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       928 ~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                      ............++++-+.+|.+.+.+.+|.|++||- .|....+.+++-..+|.+|..+.||+||++.+ +..+.++++
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            1111112223578888888888777789999999994 45555666777789999999999999998664 667888886


Q ss_pred             C
Q 001358         1008 S 1008 (1092)
Q Consensus      1008 ~ 1008 (1092)
                      .
T Consensus       647 ~  647 (794)
T PF08553_consen  647 L  647 (794)
T ss_pred             e
Confidence            3

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.41  E-value=0.13  Score=55.02  Aligned_cols=229  Identities=14%  Similarity=0.069  Sum_probs=129.0

Q ss_pred             CCceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Q 001358          345 VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY  423 (1092)
Q Consensus       345 dg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iw  423 (1092)
                      .++ .|+.|+.+| +.+++... ......                     .+...|..+...|+-+.|++-+ |+.+.++
T Consensus         6 ~~~-~L~vGt~~G-l~~~~~~~~~~~~~i---------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~~~   61 (275)
T PF00780_consen    6 WGD-RLLVGTEDG-LYVYDLSDPSKPTRI---------------------LKLSSITQLSVLPELNLLLVLS-DGQLYVY   61 (275)
T ss_pred             CCC-EEEEEECCC-EEEEEecCCccceeE---------------------eecceEEEEEEecccCEEEEEc-CCccEEE
Confidence            345 477888877 99999832 222211                     1333499999999888877775 4889999


Q ss_pred             EccCCCCccceEE-----------ecccccceeEEE--eeCCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCC
Q 001358          424 AYHGGSDARQQLE-----------IDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHG  485 (1092)
Q Consensus       424 d~~~~~~~~~~~~-----------l~~h~~~v~~~~--~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~  485 (1092)
                      ++..-........           --.....+...+  -...+.. .|+.+ ..+.|.+|.+...     +..+++. -.
T Consensus        62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~-~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp  138 (275)
T PF00780_consen   62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSR-RLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LP  138 (275)
T ss_pred             EchhhccccccccccccccccccccccccCCeeEEeeccccccce-EEEEE-ECCEEEEEEEECCcccccceeEEEE-cC
Confidence            9876443321100           011222344444  1123332 34444 4558888877653     3555654 44


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-----------CceEEEEEecCCCEEEEEecCCCCc
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----------LGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ..+.+++|.    +..++.|..+ ...+.|+.++..........           .....+.--+++.+|++..      
T Consensus       139 ~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~------  207 (275)
T PF00780_consen  139 DPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYD------  207 (275)
T ss_pred             CCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEec------
Confidence            678888885    2356666644 46778888665544332111           1112222334456666532      


Q ss_pred             eeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358          555 SFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      . +-++=-..|+..+  .+.- .   .....+++.  ..++++.+. +.|.||++.++++++.+..+
T Consensus       208 ~-~g~fv~~~G~~~r~~~i~W-~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  208 N-IGVFVNKNGEPSRKSTIQW-S---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             c-eEEEEcCCCCcCcccEEEc-C---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            1 3333233454443  2221 1   344555553  357777666 45999999999999998754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.38  E-value=0.00012  Score=80.23  Aligned_cols=203  Identities=13%  Similarity=0.103  Sum_probs=129.1

Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce--EEecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEeCC
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      .+.+++.....+..+++.|..+|.|-+-.++.....  .....+...+++++|++ |.+.|+++-..-+.+..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            344555444445567888899999998877654432  33445566889999988 566777765544567789999998


Q ss_pred             CC--eEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001358          564 EG--AIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNK-NGTLL  637 (1092)
Q Consensus       564 ~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~-~~~~l  637 (1092)
                      ++  .+..  .+.+.  ......+++|..+.+.+++|.....+.++|++- ......+.    +..+..+..+| .+.++
T Consensus       138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence            87  2221  22221  124556888998889999999989999999872 22222221    12366778888 77787


Q ss_pred             EEEeCCCeEEEEECC-CC-Ceeeeccccc----ccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358          638 AVIANENRIKILETP-ES-NSVDAAGVLS----DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~-~~-~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      ++-. ||.|.+||.. .- .++..+....    ..+..++++|..+                    |...+.....++|+
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr  270 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR  270 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence            7665 8999999943 21 2233222222    2477888887643                    33333334456788


Q ss_pred             eecee
Q 001358          712 VEKPL  716 (1092)
Q Consensus       712 ~w~~~  716 (1092)
                      ++++.
T Consensus       271 lydi~  275 (783)
T KOG1008|consen  271 LYDIC  275 (783)
T ss_pred             Eeccc
Confidence            88754

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.37  E-value=0.049  Score=58.01  Aligned_cols=223  Identities=15%  Similarity=0.089  Sum_probs=135.6

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      -.|.|+...|+.+--..+.|.-|+..+|+...                    +. +...+.++..-.++..|+++. .+ 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g-   86 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG-   86 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-
Confidence            45778887777777778899999998775432                    11 333445555544555555543 33 


Q ss_pred             EEEEEccCCCCccceEEec-cc-ccceeEEEeeCCCCcEEEEEEeCC----------CcEEEEECC-CCceeEEEecCCc
Q 001358          420 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGDD----------KTIKVWDAV-TGSRTYSFEGHGA  486 (1092)
Q Consensus       420 i~iwd~~~~~~~~~~~~l~-~h-~~~v~~~~~s~d~~~l~l~s~~~d----------~~i~vwd~~-~~~~~~~~~~~~~  486 (1092)
                      +.+++.+++.......... +. ...-+.+...|+|.  +.+ +...          ..-.+|-+. .+..++.+..+-.
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wf-gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~  163 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWF-GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLT  163 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEE-eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEE
Confidence            6777876655422221111 11 24567888899998  333 3322          112344444 5666666666666


Q ss_pred             ceEEEeecccCCccEEEEE-ecCCeEEEEEcCC-----CCc--eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          487 PVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDS-----LGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~-----~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      .-+.++|++  |++.++.+ +..+.|.-|+++.     ...  ........+..-.++...+|.+-+++...   ...|.
T Consensus       164 ~~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v~  238 (307)
T COG3386         164 IPNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRVV  238 (307)
T ss_pred             ecCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceEE
Confidence            678899965  55555555 4458888887763     111  22233344556678888888887644321   23699


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEe
Q 001358          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG  597 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s  597 (1092)
                      .|+.. |+++..+....   ..+.+++|. |+.+.|++.+
T Consensus       239 ~~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         239 RFNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             EECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence            99998 99998888875   566777774 4556665554

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.071  Score=56.81  Aligned_cols=199  Identities=13%  Similarity=0.081  Sum_probs=115.2

Q ss_pred             EEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec--
Q 001358          808 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--  883 (1092)
Q Consensus       808 ~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~--  883 (1092)
                      ..|.++...|....  .+.|.-|+..+++. ..+..+......+.+.. ++ .|+++. . -+++++.+++..+..+.  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~-~g-~Lv~~~-~-g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDA-GG-RLIACE-H-GVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecC-CC-eEEEEc-c-ccEEEeccCCceeEEeccc
Confidence            35667777666665  68899999876643 23332222223333443 34 444332 3 36677766655422221  


Q ss_pred             --c-ccCCeEEEEEcCCCCEEEEEeC-----C----CcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358          884 --G-HSKRVTGLVFSDALNILVSSGG-----D----AQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       884 --~-h~~~V~~l~~spdg~~l~s~s~-----D----g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                        + -......+...|+|.+.++...     .    ..=.||.+. .+.     ..+....+..   .-..++||||++.
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-----~~~l~~~~~~---~~NGla~SpDg~t  176 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-----VVRLLDDDLT---IPNGLAFSPDGKT  176 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-----EEEeecCcEE---ecCceEECCCCCE
Confidence              1 1234556788899988876544     0    112455555 222     1122222111   2467999999988


Q ss_pred             EEEE--eCCcEEEEEcCC--ce----eeeeeccCCCcCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEeecccc
Q 001358          951 FLLV--HETHLAIYEAEE--LT----CLKQWFPISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       951 la~~--~d~~v~lwd~~~--~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      |..+  ..+.|.-|++..  +.    ..........+....++...+|.+.+++..+| .|.+|+.+ |+++..+....
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~  254 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV  254 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence            7774  447788887752  21    11122223467778888889998886554444 89999999 99998887443

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.32  E-value=9.4e-05  Score=80.96  Aligned_cols=203  Identities=12%  Similarity=0.165  Sum_probs=128.0

Q ss_pred             CCCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEE
Q 001358          334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  411 (1092)
Q Consensus       334 ~~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l  411 (1092)
                      +..+.|++++-+.+ -++++|..+|.|.+-.+....--                 ...+..+|....+++||++ |...|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L  118 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL  118 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence            34788888876543 58999999999998877543211                 0122567888999999999 77888


Q ss_pred             EEEe----CCCEEEEEEccCC--CCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEec
Q 001358          412 GVAY----SKHIVQLYAYHGG--SDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG  483 (1092)
Q Consensus       412 as~~----~d~~i~iwd~~~~--~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~  483 (1092)
                      |+|-    .|..+.|||+.++  ...... .+.+ ......+++|..|.+  ++.+|.....+.++|++... ....+  
T Consensus       119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--  193 (783)
T KOG1008|consen  119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--  193 (783)
T ss_pred             HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence            8873    3557999999987  222111 1222 334566889998877  78888888899999976321 11111  


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEE-cCCCCceE-EecCC----CCceEEEEEecCCCE-EEEEecCCCCcee
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARV-DYDAP----GLGCTRMAYSANGRR-LFSCGTSKEGESF  556 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~-~~~~~----~~~i~~~~~s~dg~~-l~~~~~~~~~~~~  556 (1092)
                      .+..+..+.+.|- .+.++++-. ||.|-+|| ...-+... .+...    ...+..++|.|-..- ++++..   ..++
T Consensus       194 nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~t  268 (783)
T KOG1008|consen  194 NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSIT  268 (783)
T ss_pred             hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---Ccce
Confidence            2233444455442 223565544 99999999 43333222 11111    124788999996543 444433   2667


Q ss_pred             EEEEeCC
Q 001358          557 LVEWNES  563 (1092)
Q Consensus       557 i~iwd~~  563 (1092)
                      |+++|+.
T Consensus       269 Irlydi~  275 (783)
T KOG1008|consen  269 IRLYDIC  275 (783)
T ss_pred             EEEeccc
Confidence            8998875

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.29  E-value=0.77  Score=55.60  Aligned_cols=205  Identities=13%  Similarity=0.145  Sum_probs=120.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcc--------eEEEeeccc--------------CCccEEEEEecCCeEEEE
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW  514 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~--------v~~i~~~~~--------------~~~~~l~s~~~dg~i~vw  514 (1092)
                      .++.++.++.|.-.|.++|+.+.++......        ...+++...              ..+..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            4666777888888898888888776432211        112222211              133478888999999999


Q ss_pred             EcCCCCceEEecCCCC------------ceEEEEEec--CCCEEEEEecCCC------CceeEEEEeCCCCeEEEEEeec
Q 001358          515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--dg~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      |.++++....+.....            ....+.-+|  .+..++.++...+      ..+.|+-+|..+|+.+-.+..-
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            9998888765532111            000111112  1334555543222      2678999999999998776531


Q ss_pred             cc--------------cCCce-EEEEEcCCCCEEEEEe------------------CCCeEEEEECCCCceEEEEeCCCC
Q 001358          575 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       575 ~~--------------~~~~v-~~~~~~~~~~~l~~~s------------------~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      ..              ....+ ..+++.++...++.+.                  ..+.|.-.|.++|+....++...+
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            10              00011 2345555555555422                  234566778889988877754221


Q ss_pred             C-------CCCceEEEcc-CCC---EEEEEeCCCeEEEEECCCCCeeeecc
Q 001358          622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       622 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      .       ....-+.+.. +|+   .++.++.+|.+.++|..+++.+....
T Consensus       436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            0       0111122322 553   78999999999999999998876554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.13  E-value=0.14  Score=56.19  Aligned_cols=217  Identities=12%  Similarity=0.048  Sum_probs=119.0

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC----CCEEEEEeC---------C-CEEEE
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS---------K-HIVQL  422 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~las~~~---------d-~~i~i  422 (1092)
                      ..|+|.|..+.+.+..+.++               -..+-..+..+.|..+    ..+|++|+.         . |.|.+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v   66 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV   66 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred             cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence            35888898888877665543               0111123334445543    578888743         2 88999


Q ss_pred             EEccCC----CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEe-cCCcceEEEeeccc
Q 001358          423 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFE-GHGAPVYSLCPHAK  496 (1092)
Q Consensus       423 wd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~-~~~~~v~~i~~~~~  496 (1092)
                      +++...    ..++.... ....++|++++-- ++.   ++.+. .+.|.+|++...+ ....-. .....+.++...  
T Consensus        67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~---lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--  138 (321)
T PF03178_consen   67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR---LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--  138 (321)
T ss_dssp             EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE---EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred             EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE---EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence            999984    22333222 2457789998776 343   44333 4789999998887 433222 122355665542  


Q ss_pred             CCccEEEEEecCCeEEEEEcCCCCc-eE--EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-------C-
Q 001358          497 ENIHFIFSISVDGKIKAWLYDSLGA-RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------G-  565 (1092)
Q Consensus       497 ~~~~~l~s~~~dg~i~vwd~~~~~~-~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-------~-  565 (1092)
                        +.+++.|.....+.++.++.... ..  ........++++.|-++++.++.+-.    .+.+.++....       + 
T Consensus       139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~~~~~~~~~~~  212 (321)
T PF03178_consen  139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYNPEIPNSRDGD  212 (321)
T ss_dssp             --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-SS-SSTTTTT
T ss_pred             --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEECCCCccccccc
Confidence              34899999988888886655332 22  22333456888889877776665533    55566655431       2 


Q ss_pred             -eEEEEEeeccccCCceEEE---EEcCC--C------CEEEEEeCCCeEEE
Q 001358          566 -AIKRTYQGLQLQHNSVSVV---HFDTA--K------DQILAAGDDHVIKI  604 (1092)
Q Consensus       566 -~~~~~~~~~~~~~~~v~~~---~~~~~--~------~~l~~~s~dg~i~i  604 (1092)
                       .......-|-  ...|+++   .+.|.  +      ..++.++.+|.|.+
T Consensus       213 ~~L~~~~~f~l--g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  213 PKLERISSFHL--GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             TBEEEEEEEE---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ccceeEEEEEC--CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence             2222223232  2456665   44441  1      13666777777663

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK10115 protease 2; Provisional

Probab=97.13  E-value=0.63  Score=56.39  Aligned_cols=245  Identities=9%  Similarity=0.040  Sum_probs=123.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----Cc
Q 001358          397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT  466 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~  466 (1092)
                      -.+..+.|||||++||.+...     ..|++-|+.+|..+..  .+.+ .  -..++|++|++.+ +++...+     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~~-~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWTF-YYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCEE-EEEEecCCCCCCCE
Confidence            356678999999999987332     3689999998864321  1222 1  1458999999863 3333222     46


Q ss_pred             EEEEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCC--CCceEEecCCCCceEEEEEec
Q 001358          467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA  539 (1092)
Q Consensus       467 i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~  539 (1092)
                      |..+++.++  +....+........ +....+.++.+++..+..   +.+.+++.+.  ......+.........+.  .
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~  277 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H  277 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence            888898888  33334443333333 222224455655544433   4688888533  222222222222222222  2


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEe
Q 001358          540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID  617 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~  617 (1092)
                      .+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus       278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~  354 (686)
T PRK10115        278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA  354 (686)
T ss_pred             CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence            234444444333334456556665 2322 2333331 123677777773 34555566677655554432 22334433


Q ss_pred             CCCCCCCCceEEEc--cCCC-EEEEEeC---CCeEEEEECCCC
Q 001358          618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES  654 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iw~~~~~  654 (1092)
                      .... ..+..+.++  +++. ++++.+.   -+.+..+|..++
T Consensus       355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            2111 112222334  3433 3333332   367777887765

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.12  E-value=0.028  Score=61.67  Aligned_cols=214  Identities=11%  Similarity=0.115  Sum_probs=116.8

Q ss_pred             ccccCCCCCceeeecCCCCCCCCCeeEEEEecC----CCEEEEEe----------C-CeEEEEEcCCc----eeeEEe--
Q 001358          781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI--  839 (1092)
Q Consensus       781 ~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d----g~~l~~~s----------d-g~i~iwd~~~~----~~~~~~--  839 (1092)
                      ++.|+.+...+....+...++...+..+.+..+    ..++++|.          . |.+.++++...    ..+..+  
T Consensus         5 ~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~   84 (321)
T PF03178_consen    5 RLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS   84 (321)
T ss_dssp             EEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE
T ss_pred             EEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE
Confidence            344455555455555543222222333344432    56777774          1 77999999884    122211  


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      ....++|++++--.  ++ |+++. .+.|.+|++...+ ....-.- ....++++...  +++++.|+..+.+.++.++.
T Consensus        85 ~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   85 TEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred             EeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence            22467888888763  44 44443 5789999998877 4333221 22255555554  66999999888899886664


Q ss_pred             CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC-------ce-eeeeeccCC-CcCEEEE---
Q 001358          918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA---  984 (1092)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~-------~~-~~~~~~~~h-~~~v~~l---  984 (1092)
                      ... ....+..-...    ..++++.|-+|++.++++ .+|.+.++....       +. .+.....-| ...|+++   
T Consensus       159 ~~~-~l~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~  233 (321)
T PF03178_consen  159 ENN-KLILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG  233 (321)
T ss_dssp             TTE--EEEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred             cCC-EEEEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence            221 11222221111    258899998777655554 678899988762       11 222212122 5677777   


Q ss_pred             EEec--CCC------EEEEEeCCCcEEEE
Q 001358          985 TFSC--DCR------MVFTSFVDGTLSIH 1005 (1092)
Q Consensus       985 ~fs~--dg~------~l~t~s~Dg~i~vw 1005 (1092)
                      .+.|  .+.      .++.++.+|.|.+.
T Consensus       234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  234 SLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EeeecCCCCcccccceEEEEecCCEEEEE
Confidence            4445  222      47778899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.12  E-value=0.16  Score=56.22  Aligned_cols=83  Identities=8%  Similarity=0.056  Sum_probs=56.7

Q ss_pred             CCCCeeEEEEecCCCEEEEEeC-CeEEEEEcCCceeeEEecCCCCCeEE-EEEcCCC----------------CC-EEEE
Q 001358          801 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LAFNPHD----------------NN-VIAI  861 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sd-g~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d----------------~~-~las  861 (1092)
                      ....+.+++.+|++++.|+.++ |.|.++|+.++..++.+++..+.-.. +......                .. +++-
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4566889999999998888764 99999999999888877765432111 1110001                11 3444


Q ss_pred             EeCCCeEEEEEcCCceeeEeec
Q 001358          862 GMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      +-.-|.|.||.+.+|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            6678899999999887666554

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.10  E-value=0.19  Score=52.47  Aligned_cols=147  Identities=17%  Similarity=0.136  Sum_probs=89.9

Q ss_pred             CeEEEEEcCCCCCEEEEEe-CC--CeEEEEEcCCceeeEe-eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE-cCCCc
Q 001358          845 TATSLAFNPHDNNVIAIGM-DD--STILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG  919 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~-~d--g~v~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd-~~~~~  919 (1092)
                      .+.+.++++ ++..+|... .+  ..++++..  +..... +.+  ..++...|++++...+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999 677666554 23  35555543  332332 233  3688899999988777777677777774 23332


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcC---Cc--eee---eeeccCCCcCEEEEEEe
Q 001358          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS  987 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~v~lwd~~---~~--~~~---~~~~~~h~~~v~~l~fs  987 (1092)
                      ... ..+......    ..|..+++||||..+|...    ++.|.+--+.   .+  ..+   ..........++.+.|.
T Consensus       100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            211 112221111    1599999999999999843    5677777553   23  111   01111235688999999


Q ss_pred             cCCCEEEEEeCCCc
Q 001358          988 CDCRMVFTSFVDGT 1001 (1092)
Q Consensus       988 ~dg~~l~t~s~Dg~ 1001 (1092)
                      +++.+++.+...+.
T Consensus       175 ~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  175 DDSTLVVLGRSAGG  188 (253)
T ss_pred             CCCEEEEEeCCCCC
Confidence            99998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.0031  Score=66.00  Aligned_cols=104  Identities=14%  Similarity=0.267  Sum_probs=84.9

Q ss_pred             HHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccC-CCcCCccccchhhhHh
Q 001358            8 LVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI   76 (1092)
Q Consensus         8 ~~~li~q~L~~~G~~~s~~~L~~Esg~~~----------~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~~~~i   76 (1092)
                      +-.+|..++...|+.+.+..|-+|+|...          ++.++-++|.+||-.-|++.+.+- ..+.+.  ..++.|.+
T Consensus       119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~L  196 (394)
T KOG2817|consen  119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFKL  196 (394)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHHH
Confidence            57789999999999999999999999864          278889999999999999998663 222222  12378999


Q ss_pred             HHhhhhhhccCCCHH--HHHHHHHhhccccCCCCHHHHH
Q 001358           77 RKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFK  113 (1092)
Q Consensus        77 ~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~  113 (1092)
                      ..+.|++++..|...  +|++..|+.++|+........+
T Consensus       197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQ  235 (394)
T KOG2817|consen  197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQ  235 (394)
T ss_pred             HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHH
Confidence            999999999999888  9999999999999655433333

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.07  E-value=0.13  Score=56.69  Aligned_cols=84  Identities=12%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC-----------------CE
Q 001358          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ  592 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~  592 (1092)
                      ..+.+++.+|++++.++.    |.-+.|.++|..++..++..+|..  +..+.-+.....+                 .+
T Consensus       308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence            357889999998877764    346789999999999999998876  2222222221111                 12


Q ss_pred             E-EEEeCCCeEEEEECCCCceEEEEeCC
Q 001358          593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       593 l-~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      | +-+..-|.|.||.+..|..+..+...
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            2 33667899999999999888877654

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.02  E-value=0.61  Score=49.43  Aligned_cols=158  Identities=11%  Similarity=0.037  Sum_probs=83.3

Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      ....+.+..+..++ |+++++++..-....-||--...-...-..-+..|.+|.|+||+.+.+. ...|.|+.=+.....
T Consensus       141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDG  218 (302)
T ss_dssp             -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEE
T ss_pred             cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCc
Confidence            34457788899999 8999988765555567775432111222224678999999999877664 488888887722211


Q ss_pred             eeeeeee-ecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeecc--CCCcCEEEEEEecCCCEEEEE
Q 001358          920 IQTCRSL-QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       920 ~~~~~~~-~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      ..-.+.+ ......    -.+..++|.+++...|++..+.+ +.....|+.-..-..  .-......+.|.++.+-++ .
T Consensus       219 ~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-l  292 (302)
T PF14870_consen  219 ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-L  292 (302)
T ss_dssp             EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E
T ss_pred             cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-E
Confidence            1111111 111111    13789999999999998887755 345555654443322  2255688899987765555 4


Q ss_pred             eCCCcEEEE
Q 001358          997 FVDGTLSIH 1005 (1092)
Q Consensus       997 s~Dg~i~vw 1005 (1092)
                      +.+|.+.-|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            578887655

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.0027  Score=70.17  Aligned_cols=93  Identities=22%  Similarity=0.430  Sum_probs=72.4

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE-EEEECCCCCEEEEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~  414 (1092)
                      .|..+.|+|.-. ++|.+..+|.|.+..++ -+.+       |+            +.-|+..++ +++|.|||+.||+|
T Consensus        22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaVg   80 (665)
T KOG4640|consen   22 NIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAVG   80 (665)
T ss_pred             ceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEEE
Confidence            788999999988 89999999999998887 4433       33            333666666 99999999999999


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeC
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA  451 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~  451 (1092)
                      -.||+|++-|+++|..+...  ...-...|.++-|.+
T Consensus        81 ~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   81 FKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR  115 (665)
T ss_pred             ecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence            99999999999998765431  123345677777763

>smart00320 WD40 WD40 repeats

Probab=96.92  E-value=0.0022  Score=43.87  Aligned_cols=39  Identities=36%  Similarity=0.622  Sum_probs=34.6

Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      +++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK10115 protease 2; Provisional

Probab=96.86  E-value=1.9  Score=52.43  Aligned_cols=244  Identities=9%  Similarity=0.024  Sum_probs=121.6

Q ss_pred             CceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+..+.+||||++++.+.+.+|    .|++-|+.+|..+.. .                 +.+   .-..++|++|++.|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~~---~~~~~~w~~D~~~~  186 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LDN---VEPSFVWANDSWTF  186 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------ccC---cceEEEEeeCCCEE
Confidence            5777899999996555444443    488999988864421 0                 111   11459999999988


Q ss_pred             EEEeCC------CEEEEEEccCCCCccceEEeccccccee-EEEeeCCCCcEEEEEEe-CCCcEEEEECC--CCceeEEE
Q 001358          412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF  481 (1092)
Q Consensus       412 as~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~-~~~~s~d~~~l~l~s~~-~d~~i~vwd~~--~~~~~~~~  481 (1092)
                      +....+      ..|..+++.++..-... .+.+...... .+..+.|++++++-+.+ .++.+.+++..  ++.....+
T Consensus       187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (686)
T PRK10115        187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL  265 (686)
T ss_pred             EEEEecCCCCCCCEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence            776442      35788888877311111 2222222233 33345588853322222 34578888843  34422222


Q ss_pred             ecCCcceEEEeecccCCccEEEEEecC-Ce--EEEEEcCCCCc-eEEecC-CCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358          482 EGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGA-RVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~--i~vwd~~~~~~-~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      .........+. + . ++.+++....+ ..  |...++..... ...+.. ....+..+.+.  ++.|+..... .+...
T Consensus       266 ~~~~~~~~~~~-~-~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~  339 (686)
T PRK10115        266 PRRKDHEYSLD-H-Y-QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS  339 (686)
T ss_pred             ECCCCCEEEEE-e-C-CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence            21222222222 1 1 22333333222 23  33344442122 223333 23367777776  4455544432 34666


Q ss_pred             EEEEeCCCCeEEEEEe-eccccCCceEEEEEc--CCCC-EEEEEe---CCCeEEEEECCCCc
Q 001358          557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ  611 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~s---~dg~i~iwd~~~~~  611 (1092)
                      +++++..++.. ..+. ...   ..+..+.++  +++. .+++.+   .-+.++.+|..+++
T Consensus       340 l~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        340 LRQINRKTREV-IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEcCCCCce-EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            78888654433 3332 111   223333344  3444 333332   45678888988765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.047  Score=59.38  Aligned_cols=146  Identities=9%  Similarity=0.105  Sum_probs=101.6

Q ss_pred             EEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCE--E-----EEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001358          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD  930 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~--l-----~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  930 (1092)
                      +|.++.....++--|++.|+.+..+.-|.. |.-+.+.|+.+.  |     +.|=.|..|.-||..-.........+...
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            444556666888899999999999997777 778888887532  2     22445777899987642221111112111


Q ss_pred             CCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          931 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       931 ~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      -  .......|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..+..+.||++|+.. .+..+.+-++.
T Consensus       427 y--~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  427 Y--STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             c--ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence            1  1112356677777777766789999999997 6666666788889999999999999999855 46677777654

>PHA02713 hypothetical protein; Provisional

Probab=96.80  E-value=0.074  Score=62.70  Aligned_cols=199  Identities=9%  Similarity=-0.002  Sum_probs=107.8

Q ss_pred             CCCEEEEEeCC------CeEEEEEcCCcee--eEeeccccCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEcCCCcee
Q 001358          855 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ  921 (1092)
Q Consensus       855 d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~  921 (1092)
                      ++.+.+.|+.+      ..+..||..+..-  +..+.........+  .-+|+..+.||.++     ++..||..+++..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56777888754      3578888877542  22222111112222  23678888888764     4788998876533


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC-----------------------CcEEEEEcCCceeeeeeccCC
Q 001358          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS  977 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d-----------------------~~v~lwd~~~~~~~~~~~~~h  977 (1092)
                      ....+.....      ...  +..-+|++.++| .+                       +.+..||..+.+-... .+-.
T Consensus       381 ~~~~mp~~r~------~~~--~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~  451 (557)
T PHA02713        381 MLPDMPIALS------SYG--MCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW  451 (557)
T ss_pred             ECCCCCcccc------ccc--EEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence            3222211111      111  223367766664 22                       2477888876654322 1111


Q ss_pred             CcCEEEEEEecCCCEEEEEeCCC------cEEEEECCC-CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe
Q 001358          978 SVPISQATFSCDCRMVFTSFVDG------TLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~s~Dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1050 (1092)
                      .......+..-+|+..+.||.++      .+..||..+ .+....    ...+..     .....++..  ++...++|+
T Consensus       452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~----~~m~~~-----r~~~~~~~~--~~~iyv~Gg  520 (557)
T PHA02713        452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI----TTTESR-----LSALHTILH--DNTIMMLHC  520 (557)
T ss_pred             cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc----cccCcc-----cccceeEEE--CCEEEEEee
Confidence            11222222345677777787642      467788887 444311    111111     112223333  478999999


Q ss_pred             CCC--cEEEEecCCCCCccccCCCCCccc
Q 001358         1051 TNG--EVYVIEPNEPGDTWAVLPPDEIVG 1077 (1092)
Q Consensus      1051 ~dg--~v~~w~~~~~~~~~~~~~~~~~~~ 1077 (1092)
                      .||  ++..||+  ...+|...+|.-.+.
T Consensus       521 ~~~~~~~e~yd~--~~~~W~~~~~~~~~~  547 (557)
T PHA02713        521 YESYMLQDTFNV--YTYEWNHICHQHSNS  547 (557)
T ss_pred             ecceeehhhcCc--ccccccchhhhcCCc
Confidence            999  7778888  455699888876544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0056  Score=67.73  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=69.0

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001358          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  922 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~  922 (1092)
                      ..+.-+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++....
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4677899999 88899999999999999998 777888887888888 99999999999999999999999999976443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.75  E-value=0.23  Score=51.84  Aligned_cols=147  Identities=18%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE-cCCceee
Q 001358          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI  879 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~  879 (1092)
                      ..+.+.++|+|++.+|...  ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence            3678999999999888776  5444444444333333332 233788889999 677777777677777774 3333321


Q ss_pred             -Eeec--cccCCeEEEEEcCCCCEEEEEe---CCCcEEEEEcCCCcee----eeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358          880 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       880 -~~l~--~h~~~V~~l~~spdg~~l~s~s---~Dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                       ..+.  .-.+.|+.+.+||||..+|...   .++.|.+=-+......    ....+......   ...+..++|.+++.
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST  178 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence             1121  1122899999999999988766   3567777766532221    11111222111   23689999999999


Q ss_pred             EEEEE
Q 001358          950 RFLLV  954 (1092)
Q Consensus       950 ~la~~  954 (1092)
                      +++.+
T Consensus       179 L~V~~  183 (253)
T PF10647_consen  179 LVVLG  183 (253)
T ss_pred             EEEEe
Confidence            88874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.75  E-value=0.036  Score=65.74  Aligned_cols=145  Identities=12%  Similarity=0.117  Sum_probs=98.4

Q ss_pred             CcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc-eEEEeeccc---CCccEEEEEecCCeEEEEEcCCCCceEE-ec--
Q 001358          454 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVD-YD--  526 (1092)
Q Consensus       454 ~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~--  526 (1092)
                      +.++|........|+-.|+++|+.+..+..|... |..++....   -+..-.+.|-.+..+..||.+....... -.  
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            3334555556688999999999999999888754 777654211   0123456777888899999987543221 11  


Q ss_pred             --CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358          527 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       527 --~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i  604 (1092)
                        .......|++-+.+|. ||+|+.    +|-|++||.-..+....+.+..   .+|..+..+.||+++++.+. ..+.+
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL  643 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL  643 (794)
T ss_pred             ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence              1233577887777774 666665    4459999965444444555555   89999999999999988775 45556


Q ss_pred             EEC
Q 001358          605 WDM  607 (1092)
Q Consensus       605 wd~  607 (1092)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.73  E-value=0.04  Score=61.00  Aligned_cols=161  Identities=14%  Similarity=0.112  Sum_probs=94.7

Q ss_pred             CCeEEEEEcCCCCCEEEEEe--CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCC
Q 001358          844 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .++..+||.. +.+.+.+.-  .+|.+++=   +.+.+.+|+    .|..+.|+|-    -..|...-.-+.|.||.+..
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4778899984 444444432  33443332   223455554    4889999985    33455567788899999873


Q ss_pred             Cceeeeeee--ecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEE
Q 001358          918 WGIQTCRSL--QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1092)
Q Consensus       918 ~~~~~~~~~--~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1092)
                      ......+.+  ++-+-.....--...+.|+|....|++ ...+.-.++++......-..-....+.|.|.+|..||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence            322222222  222211111123467899999999988 44444455666533322221223478999999999998877


Q ss_pred             EEe-CCCcEEEEECCCCce
Q 001358          995 TSF-VDGTLSIHEASNLEV 1012 (1092)
Q Consensus       995 t~s-~Dg~i~vwd~~~~~~ 1012 (1092)
                      ++- ..=.-++||-....+
T Consensus       172 VAvGSsLHSyiWd~~qKtL  190 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQKTL  190 (671)
T ss_pred             EEeCCeEEEEEecCchhhh
Confidence            653 333467998665533

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.037  Score=60.16  Aligned_cols=144  Identities=13%  Similarity=0.143  Sum_probs=95.3

Q ss_pred             CCCEEEE-EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEE-----EEEeCCCcEEEEECCCC-c-ee
Q 001358          407 DGSLLGV-AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV-----ITCGDDKTIKVWDAVTG-S-RT  478 (1092)
Q Consensus       407 dg~~las-~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l-----~s~~~d~~i~vwd~~~~-~-~~  478 (1092)
                      +..+|.. +.....++--|++.|+.+.   ++.-|.. |+-+.+.|+.+.--+     +.|-.|..|+-||++-. . .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            4444443 4444558888999998776   4555555 888888887652111     23556888999998732 2 23


Q ss_pred             EEEecCC----cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       479 ~~~~~~~----~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ...++|.    ....|.+  ...+| +++.||.+|.||+||--.......+.+-+.+|..+..+.||+++++.+     +
T Consensus       420 ~~~q~kqy~~k~nFsc~a--TT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFA--TTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K  491 (644)
T ss_pred             eeeeccccccccccceee--ecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence            2223332    1233333  34444 899999999999998744445556777888999999999999998765     4


Q ss_pred             eeEEEEeC
Q 001358          555 SFLVEWNE  562 (1092)
Q Consensus       555 ~~i~iwd~  562 (1092)
                      .++.+.+.
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            45666654

>smart00320 WD40 WD40 repeats

Probab=96.66  E-value=0.0036  Score=42.72  Aligned_cols=37  Identities=27%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEe
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  363 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd  363 (1092)
                      ....+..|.+.|.++.|+|++. ++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            4566778999999999999997 789999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.58  E-value=0.094  Score=45.22  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             eEEEEEcC---CC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEc
Q 001358          889 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  964 (1092)
Q Consensus       889 V~~l~~sp---dg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~  964 (1092)
                      |++|++..   || +.|+.||.|..|++|+=+.       .+......    ..|++++-...+++..+-.+|+|.+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            67777765   32 6799999999999998765       22222222    2588888888877777778999999985


Q ss_pred             CCceeeeeeccCCCcCEEEEEEec---CC-CEEEEEeCCCcEEE
Q 001358          965 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 1004 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~s~Dg~i~v 1004 (1092)
                      .    .+.|.......++++++..   || .-|++|-.+|.|-+
T Consensus        71 ~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   71 S----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             c----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            3    2223333344567766543   33 25888888887653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.52  E-value=0.22  Score=58.53  Aligned_cols=235  Identities=11%  Similarity=0.023  Sum_probs=124.7

Q ss_pred             CCCEEEEEeCC------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC------CcEEEEECCC
Q 001358          407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT  474 (1092)
Q Consensus       407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~  474 (1092)
                      .+.++++|+.+      ..+..+|..+++-.. ...+. +...-.++++.. +.  +.++||.|      .++..||..+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence            45566666655      358888988763221 11222 222234445443 44  78888888      3577888887


Q ss_pred             CceeE--EEecCCcceEEEeecccCCccEEEEEecCCe-----EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       475 ~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ++-..  .+...........+    +|.+.+.|+.||.     +..||..+.+-...-......-..-...-+|+..++|
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence            76432  11111111111111    6678899998875     6667665544322222222122222334467777777


Q ss_pred             ecCCCCc--eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeCCC
Q 001358          548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      |.++..+  ..+..||+.+++....-.... ...... ++. -++...++||.|+     +|..||..+.+....-....
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            7655432  678899998876644332222 001122 222 2455666677665     37788988877655532222


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCC-----eEEEEECCCCC
Q 001358          621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN  655 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~  655 (1092)
                      ....+..+  .-++...++|+.||     ++..||..+.+
T Consensus       512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence            21111112  23577778887764     46666666553

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.52  E-value=1.1  Score=49.14  Aligned_cols=113  Identities=23%  Similarity=0.272  Sum_probs=59.1

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---CCEEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~la  412 (1092)
                      ..+.|+|.|||+ ++++ ...|.|++++ ..+.....    +-++        ..+..........++|+|+   ..+|.
T Consensus         3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~----v~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP----VADL--------PEVFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE----EEE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce----eccc--------ccccccccCCcccceeccccCCCCEEE
Confidence            568999999997 6665 4589999999 44543110    0000        0123345678899999995   33443


Q ss_pred             -EEeCC--------CEEEEEEccCCC-Ccc---ce-EEecc---cccceeEEEeeCCCCcEEEEEEeCCC
Q 001358          413 -VAYSK--------HIVQLYAYHGGS-DAR---QQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       413 -s~~~d--------~~i~iwd~~~~~-~~~---~~-~~l~~---h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                       +.+..        ..|.-|....+. .+.   .+ ..+..   ....-..|+|.|||.  +.++.+..+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~  135 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG  135 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence             33321        245555555441 111   11 01111   223456799999996  555555443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.51  E-value=1  Score=50.11  Aligned_cols=284  Identities=12%  Similarity=0.104  Sum_probs=147.2

Q ss_pred             CCEEEEEeCCCeEEEEECCCCc-----eEEEEeCCCCCCCCceEEEc---c--CCCEEEEEeCCCeEEEEECCCC--C--
Q 001358          590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N--  655 (1092)
Q Consensus       590 ~~~l~~~s~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iw~~~~~--~--  655 (1092)
                      ...+++||..|.++||+...+.     .+-..+..   .+|..+...   +  +...||+ -.-..+.+|.+...  .  
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            4689999999999999986543     22222222   235555432   2  2344555 34567888876311  1  


Q ss_pred             -----eeeecccccc--cceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358          656 -----SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       656 -----~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1092)
                           .+.....|.-  ...++.+.|.+.                 ......+..-+.||.+.+++-+...    ....+
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l  171 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL  171 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence                 1111111111  111122222211                 1224567778899999999854221    11122


Q ss_pred             CCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCccc----------ccccCCccccCCCCCceeeecCCC
Q 001358          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~  798 (1092)
                      +..-.   ...+.|.+....+++++++..+..|+++.-....+...          ....-..-|...-|+...      
T Consensus       172 p~~ll---PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------  242 (418)
T PF14727_consen  172 PDFLL---PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------  242 (418)
T ss_pred             CCCCC---CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence            22112   23468888888899999999999988754222111110          111122335544444222      


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEE-E------cCCCCCEEEEEeCCCeEEEE
Q 001358          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA-F------NPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~-~------s~~d~~~lasg~~dg~v~iw  871 (1092)
                           .+..+.++.....+++-+...+.+.+-. |......+ ......|++ |      .+..+..+++++.++++.||
T Consensus       243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy  315 (418)
T PF14727_consen  243 -----DIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVY  315 (418)
T ss_pred             -----EEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEE
Confidence                 2333444444455666666777666653 44332222 122222222 1      12112358889999999999


Q ss_pred             EcCCceeeEeeccccCCeEEEE---EcCCCCEEEEEeCCCcEEEEEcCC
Q 001358          872 NARSSEVISKLEGHSKRVTGLV---FSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~---~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .=  .+.+...+....+| ++.   |..-...+++-+.+|.+.+-=+.+
T Consensus       316 ~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  316 ED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             eC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            53  34444444333333 333   223356888889999988876655

>PHA02713 hypothetical protein; Provisional

Probab=96.48  E-value=0.13  Score=60.62  Aligned_cols=202  Identities=8%  Similarity=-0.018  Sum_probs=101.5

Q ss_pred             CCCcEEEEEEeCC------CcEEEEECCCCceeE--EEecCCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCC
Q 001358          452 PCKQISVITCGDD------KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS  518 (1092)
Q Consensus       452 d~~~l~l~s~~~d------~~i~vwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~  518 (1092)
                      ++.  +++.||.+      ..+..||+.+.....  .+.........+.+    ++.+.+.|+.++     .+..||..+
T Consensus       303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence            555  56667643      347788887765321  11111111111222    556777787664     377888765


Q ss_pred             CCceEEecCCCCceEEEEEecCCCEEEEEecCCC-------------------CceeEEEEeCCCCeEEEEEeeccccCC
Q 001358          519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-------------------GESFLVEWNESEGAIKRTYQGLQLQHN  579 (1092)
Q Consensus       519 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-------------------~~~~i~iwd~~~~~~~~~~~~~~~~~~  579 (1092)
                      ..=...-..+.......+..-+|+..+.||.++.                   ....+..||+.+.+....-.-.. ...
T Consensus       377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~  455 (557)
T PHA02713        377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI  455 (557)
T ss_pred             CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence            4322111111111111122346776666664321                   02458889988876543222111 011


Q ss_pred             ceEEEEEcCCCCEEEEEeCC------CeEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--eEEEEE
Q 001358          580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE  650 (1092)
Q Consensus       580 ~v~~~~~~~~~~~l~~~s~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~  650 (1092)
                      ....+  .-++...+.|+.+      ..+..||..+ .+....-...........++  -+++..++|+.++  .+..||
T Consensus       456 ~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        456 RPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cCcEE--EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence            11112  2245555566643      2467899887 55543333222221222222  2688889999888  777888


Q ss_pred             CCCCCeeeeccccc
Q 001358          651 TPESNSVDAAGVLS  664 (1092)
Q Consensus       651 ~~~~~~~~~~~~~~  664 (1092)
                      ..+.+.......|.
T Consensus       532 ~~~~~W~~~~~~~~  545 (557)
T PHA02713        532 VYTYEWNHICHQHS  545 (557)
T ss_pred             cccccccchhhhcC
Confidence            88776555444443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.42  E-value=1.4  Score=48.23  Aligned_cols=239  Identities=13%  Similarity=0.141  Sum_probs=120.0

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe----cCCCCCeEEEEEcCC---CCCEEEEEeCC--------
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD--------  865 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d--------  865 (1092)
                      ..+.|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999998877789999999 44443   2222    223456799999992   13333333321        


Q ss_pred             CeEEEEEcCCc-------ee-eEeecc---ccCCeEEEEEcCCCCEEEEEeCCCc-----------EEEEEcCC-Cceee
Q 001358          866 STILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-----------IFVWDVDG-WGIQT  922 (1092)
Q Consensus       866 g~v~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~-----------i~iwd~~~-~~~~~  922 (1092)
                      ..|.-|....+       +. +..+..   ....-..|+|.|||.+.++.+..+.           =+|+.+.. +....
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~  161 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA  161 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence            13444444332       11 122222   2223456999999988888776543           01121111 00000


Q ss_pred             -----------eeeeecCCCCcCCCCCceEEEEecC-CCEEEE--EeCCcEEEEEcCCcee----------------e--
Q 001358          923 -----------CRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L--  970 (1092)
Q Consensus       923 -----------~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~--~~d~~v~lwd~~~~~~----------------~--  970 (1092)
                                 .....  .|.    .....++|.|. |++.++  +.+..=.|.-+..|.-                .  
T Consensus       162 dnP~~~~~~~~~~i~A--~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~  235 (331)
T PF07995_consen  162 DNPFVGDDGADSEIYA--YGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGD  235 (331)
T ss_dssp             TSTTTTSTTSTTTEEE--E------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECT
T ss_pred             CCccccCCCceEEEEE--eCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccc
Confidence                       00000  011    12477999999 887776  4443322322322210                0  


Q ss_pred             ---------eeeccCCCcCEEEEEEec-------CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358          971 ---------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       971 ---------~~~~~~h~~~v~~l~fs~-------dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                               ..+.-.+...+..+.|-.       .|.++++.-..+.|....+..+........  .. .   ...-+++
T Consensus       236 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~---~~~~r~~  309 (331)
T PF07995_consen  236 APSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-G---GFGGRPR  309 (331)
T ss_dssp             GSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-T---TSSS-EE
T ss_pred             ccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-c---cCCCCce
Confidence                     000111345677777753       455676666567787777775533322221  11 1   1122456


Q ss_pred             EEEECCCCCCEEEEEeCCCcEE
Q 001358         1035 AIAAHPLKPTQFAVGLTNGEVY 1056 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~ 1056 (1092)
                      .+++.| ||.++++.+.+|.|+
T Consensus       310 ~v~~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  310 DVAQGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEET-TSEEEEEE-TTTTEE
T ss_pred             EEEEcC-CCeEEEEECCCCeEe
Confidence            888988 588888888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.05  Score=64.37  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      -+..++.|+..|.+-..|+.+.  +.....-..-.++|++++|+.||+  .++.|-.+|.|.+||+.+++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            4567888988899988888764  221111223457999999999999  788999999999999999999999998888


Q ss_pred             ceEEEeecc-cCCccEEEEEecCCeEEEEEc
Q 001358          487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY  516 (1092)
Q Consensus       487 ~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~  516 (1092)
                      +.+.+-+.. ..++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            887765432 334456777777776  5543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.26  E-value=1.7  Score=44.58  Aligned_cols=185  Identities=9%  Similarity=0.095  Sum_probs=113.5

Q ss_pred             CeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee
Q 001358          804 AVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      -...+.|..+|.++-+.+ .  ..|+.+|+.+++......-.. ----.++..  ++++..-.-.++...+||..+-+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            345688878888877776 2  469999999998776544322 233445555  4556666788999999999999988


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCc
Q 001358          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  958 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~  958 (1092)
                      .++. ..+.=+.++  .|++.|+.......|.++|.++-+......+.......   ..+.-+.+- +|...|=. ....
T Consensus       124 ~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  124 GTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCCe
Confidence            8886 345567777  46777777666777999998875544433333221111   245666665 55544433 5567


Q ss_pred             EEEEEcCCceeeeeecc-----------CC---CcCEEEEEEecCCCEEEEEe
Q 001358          959 LAIYEAEELTCLKQWFP-----------IS---SVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       959 v~lwd~~~~~~~~~~~~-----------~h---~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      |...|..+|+....+-.           .+   ..-...+++.|++..+...|
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            88888888887764311           01   34578899988766555444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.18  E-value=2.9  Score=46.62  Aligned_cols=277  Identities=13%  Similarity=0.102  Sum_probs=149.5

Q ss_pred             CCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001358          745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS  819 (1092)
Q Consensus       745 ~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~-----dg~~l~~  819 (1092)
                      +...+++|+..|.+++|+-......+.                 ..+...+     -..+|..++.-+     +...||+
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaV   93 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAV   93 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEE
Confidence            345688899999999998533221111                 1122222     345666665432     3456777


Q ss_pred             EeCCeEEEEEcCC--ce-------eeEEecCCC--CCeEEEEEcCC----CCCEEEEEeCCCeEEEEEcCCceeeEeecc
Q 001358          820 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       820 ~sdg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      -.-..+.||.+..  |.       .+..+..|.  .....++.-|.    +..++++=+.||.+.+|+-+.-.....+.+
T Consensus        94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~  173 (418)
T PF14727_consen   94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD  173 (418)
T ss_pred             ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence            6778888888731  11       112222232  23334444332    246899999999999999876554455544


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---------------------eeeeeecCCCCcCCCCCceEEE
Q 001358          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---------------------TCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                       .--...+++++.-..+++++.+..|.-|....-...                     ....+...+...    .+..+.
T Consensus       174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~  248 (418)
T PF14727_consen  174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVR  248 (418)
T ss_pred             -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEE
Confidence             222334788888889999999988888875321000                     000000111100    233344


Q ss_pred             EecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEE-Eec----CCC---EEEEEeCCCcEEEEECCCCceEEe
Q 001358          944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQAT-FSC----DCR---MVFTSFVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus       944 ~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~-fs~----dg~---~l~t~s~Dg~i~vwd~~~~~~~~~ 1015 (1092)
                      ++.....+++-.+..+...+.. |.......-  .....+++ |..    ++.   .++.++.++++.||.=.+....+.
T Consensus       249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~  325 (418)
T PF14727_consen  249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQ  325 (418)
T ss_pred             cCCCCceEEEEecceEEEEcCC-CeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecC
Confidence            4444445555556667776653 443332211  22222222 222    222   477788999999986554444433


Q ss_pred             eccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358         1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1016 ~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      ..          ..+|. +.++.-++-...|++-+.+|.+.+-=+-.
T Consensus       326 l~----------~~PVa-l~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  326 LP----------HVPVA-LSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CC----------CCCEE-EEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            32          11222 22333222357899999999998865543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.12  E-value=0.12  Score=61.71  Aligned_cols=249  Identities=9%  Similarity=0.041  Sum_probs=143.5

Q ss_pred             CCCeeEEEEecCCCEEEEEe--C-CeEEEEEcCCceeeE-----EecCC------CCCeEEEEEcCCCCCEEEEEeCCCe
Q 001358          802 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMPP------SPTATSLAFNPHDNNVIAIGMDDST  867 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~s--d-g~i~iwd~~~~~~~~-----~~~~~------~~~i~~l~~s~~d~~~lasg~~dg~  867 (1092)
                      ...+..+...+|+...++..  + -.|..||+.+...-.     .+..|      .....++.|.|.=....|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44566777788887766664  3 358999987543221     12212      2344677888743445667788999


Q ss_pred             EEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec
Q 001358          868 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1092)
Q Consensus       868 v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  946 (1092)
                      |++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|........   .+..+....  ...|.+|.|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence            9988775432 223333 5567899999999999999999999998876653211   222222111  13688888888


Q ss_pred             CCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCC
Q 001358          947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus       947 dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
                      .-.++++-...        ++        ....+...+++.+.      -.-||.+.+-..-.+..-  |   ..++...
T Consensus       254 t~eflvvy~n~--------ts--------~~~dpd~y~~~~~k------~kp~g~~nF~E~~d~tpp--f---g~~~rq~  306 (1405)
T KOG3630|consen  254 TQEFLVVYGNV--------TS--------ETDDPDSYDQKMYK------IKPDGSANFQETFDITPP--F---GQIVRQP  306 (1405)
T ss_pred             ceeEEEEeccc--------cc--------CcCCchhhhhcccc------ccCcceeeeccccCCCCC--c---cccCccc
Confidence            77777761110        00        00111111121111      113444444333222221  1   0111111


Q ss_pred             ccCcccceEEEECCCCCCEEEEEeCC-CcEEEEecCCCCCccccCCCCCcccCCCCCCccccc
Q 001358         1027 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDR 1088 (1092)
Q Consensus      1027 ~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1088 (1092)
                      |  .....-..|.|++...++++..- ..|-+|...   ..|....+.|-.++..+.+.++|+
T Consensus       307 h--~y~~~L~~W~~~~~~vVvvansaSsEvsila~~---~qW~~w~~vde~ra~LP~s~k~d~  364 (1405)
T KOG3630|consen  307 H--MYKVTLSGWIEPDANVVVVANSASSEVSILASM---KQWIEWSQVDEKRAVLPISEKTDK  364 (1405)
T ss_pred             h--hHHHhhhhhcccccceEEEecccccchhhhhhh---cceeeccccccceeeecccccCCC
Confidence            1  11122346777666666655543 468899882   569999999988999999988883

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.12  E-value=0.73  Score=50.18  Aligned_cols=189  Identities=13%  Similarity=0.126  Sum_probs=95.8

Q ss_pred             EEEecCCCEEEEEe---C----CeEEEEEcCCceeeEEecCCC---CCeEEEEEcCCCCCEEEEEe--------------
Q 001358          808 FALSKNDAYLFSAS---G----GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM--------------  863 (1092)
Q Consensus       808 ~~~s~dg~~l~~~s---d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~--------------  863 (1092)
                      +-.-|+|+.++++-   +    |.+.++|-++.+.........   ..-..+-+.| ..+.++|..              
T Consensus       135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~  213 (461)
T PF05694_consen  135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPE  213 (461)
T ss_dssp             EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TT
T ss_pred             eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChh
Confidence            34457888888772   1    458899999888877765432   2346677788 677777753              


Q ss_pred             ------CCCeEEEEEcCCceeeEeecccc--CCeEEEEEcCC--CCEE-EEEeCCCcEEEE-EcCCCceeeeeeeecCCC
Q 001358          864 ------DDSTILIYNARSSEVISKLEGHS--KRVTGLVFSDA--LNIL-VSSGGDAQIFVW-DVDGWGIQTCRSLQTPDG  931 (1092)
Q Consensus       864 ------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~spd--g~~l-~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~  931 (1092)
                            ...++.+||+.+.+.++++.--.  ..+..+.|..+  ..+= +.+.-...|..| .-+.++....+++..+..
T Consensus       214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             THHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             HhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                  23489999999999998886422  23556777654  4443 333334444444 435666555556655433


Q ss_pred             Cc------CC-------CCCceEEEEecCCCEEEEE--eCCcEEEEEcCCce---eeeeeccC-------C--------C
Q 001358          932 VM------TL-------APSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---CLKQWFPI-------S--------S  978 (1092)
Q Consensus       932 ~~------~~-------~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~---~~~~~~~~-------h--------~  978 (1092)
                      ..      ..       .+-|+.+.+|.|.++|.++  ..|.|+.||+....   ...+...+       |        .
T Consensus       294 ~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~  373 (461)
T PF05694_consen  294 KVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLR  373 (461)
T ss_dssp             E--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------
T ss_pred             ccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccC
Confidence            11      00       2358999999999999985  68999999997543   23222211       0        2


Q ss_pred             cCEEEEEEecCCCEEEEEe
Q 001358          979 VPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       979 ~~v~~l~fs~dg~~l~t~s  997 (1092)
                      +...-+..|-||+.|...+
T Consensus       374 GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  374 GGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             S----EEE-TTSSEEEEE-
T ss_pred             CCCCeEEEccCCeEEEEEe
Confidence            3346678899998877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=95.99  E-value=3.2  Score=45.45  Aligned_cols=157  Identities=10%  Similarity=0.027  Sum_probs=87.4

Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcC
Q 001358          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  965 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~  965 (1092)
                      .+.+.++.+.|++.++++ +..|.+.. ..+.+. .....+.....     ..+.++++.++++.++++..|.+.+=...
T Consensus       172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~-s~~~gg-~tW~~~~~~~~-----~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAV-SSRGNFYS-TWEPGQ-TAWTPHQRNSS-----RRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEE-eCCceEEE-EcCCCC-CeEEEeeCCCc-----ccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            456889999999876655 45564432 211111 11222222211     35889999999999888877766533344


Q ss_pred             CceeeeeeccC---CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001358          966 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus       966 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
                      .|..-.....+   ....+..+.|.+++..++ ++.+|.+. ...+.|+.-.........+.     ..+  .+.+..  
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~--  312 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD--  312 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC--
Confidence            44433221111   234578899999887666 44677554 45565554333221111111     123  344442  


Q ss_pred             CCEEEEEeCCCcEEEEecC
Q 001358         1043 PTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ++....++..|.|-.|+-.
T Consensus       313 ~~~~~~~G~~G~il~~~~~  331 (334)
T PRK13684        313 PEKGFVLGQRGVLLRYVGS  331 (334)
T ss_pred             CCceEEECCCceEEEecCC
Confidence            3456667788998887754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.96  E-value=2.2  Score=43.77  Aligned_cols=204  Identities=16%  Similarity=0.227  Sum_probs=121.9

Q ss_pred             cccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEe
Q 001358          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1092)
Q Consensus       732 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s  811 (1092)
                      +....+.+++|+|+.+.|++........++=                      ...|..+.+..+.+   -.....+.+.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence            3445599999999999999998876555432                      23455566666654   2334567777


Q ss_pred             cCCCEEEEEe-CCeEEEEEcCCceeeEE-------ec--CC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---
Q 001358          812 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---  877 (1092)
Q Consensus       812 ~dg~~l~~~s-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---  877 (1092)
                      .+|+++++-- ++.+.++.+.....+..       +.  .+ ....-.+||+| .+..|..+-+-.-+.||....+.   
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence            7888777665 57788777665432221       11  12 44567899999 66677777777767777665332   


Q ss_pred             eeEeeccc-------cCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358          878 VISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       878 ~~~~l~~h-------~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      .+.....+       -..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........+-...-.....+++.++|.
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence            11111112       23467788876 45666767778878777777643222112222222221113456788888888


Q ss_pred             EEEEEeCCcEEE
Q 001358          950 RFLLVHETHLAI  961 (1092)
Q Consensus       950 ~la~~~d~~v~l  961 (1092)
                      +-+++..+-.+.
T Consensus       297 lYIvSEPnlfy~  308 (316)
T COG3204         297 LYIVSEPNLFYR  308 (316)
T ss_pred             EEEEecCCccee
Confidence            777765554443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.87  E-value=3.1  Score=44.28  Aligned_cols=230  Identities=11%  Similarity=0.069  Sum_probs=110.9

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cee-
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEV-  878 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~-  878 (1092)
                      ...++.|..+ ..++++..+ +.+...+.|+.-..+.   .-.+....+.... ++..++ ++..|.|  |...+ |+. 
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~i--y~T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAI--YRTTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--E--EEESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcE--EEeCCCCCCe
Confidence            4567777654 445555545 3334444343332221   1222333333333 333333 3444543  33333 321 


Q ss_pred             eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCc
Q 001358          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH  958 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~  958 (1092)
                      ......-.+.+..+.-++||+++++++.-....-||-....   .........     ..|..+.|+||+.+.+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~~-----~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNSS-----RRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--SS-----S-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCcc-----ceehhceecCCCCEEEEeCCcE
Confidence            22233445778899999999999887766666677765422   112222211     3699999999999988888888


Q ss_pred             EEEEE-cCCceeeeee-cc--CCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358          959 LAIYE-AEELTCLKQW-FP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       959 v~lwd-~~~~~~~~~~-~~--~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      |+.=+ ....+..... .+  ...-.+..++|.+++...++|+ .|+ .+...+.|+.-.+.......+..     ++  
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~~~~~~~~~~~n-----~~--  279 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQKDRVGENVPSN-----LY--  279 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-EE-GGGTTSSS----------
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccceECccccCCCCc-----eE--
Confidence            88877 2223222211 11  1244588999999988877665 454 45677778776666544444444     44  


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEE
Q 001358         1035 AIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      .+.|.+  ++.-.+.+.+|.|--|
T Consensus       280 ~i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEEcC--CCceEEECCCcEEEEe
Confidence            455543  2455566688877655

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.83  E-value=0.27  Score=42.44  Aligned_cols=102  Identities=14%  Similarity=0.123  Sum_probs=65.0

Q ss_pred             ceEEee---cCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       337 V~~v~~---spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      |+++++   .-||..-|++|+.|..|+||+=+  +.+..  +                  ...+.|++++-... .+++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i------------------~e~~~v~~L~~~~~-~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--I------------------TETDKVTSLCSLGG-GRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--E------------------ecccceEEEEEcCC-CEEEE
Confidence            455554   55676679999999999999944  33322  1                  14567888887766 66888


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEee---CCCCcEEEEEEeCCCcEE
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS---APCKQISVITCGDDKTIK  468 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s---~d~~~l~l~s~~~d~~i~  468 (1092)
                      +..+|+|-+|+-..    +.. ..+... .++++++.   .||.. -|++|-.+|.|-
T Consensus        59 ~l~NGTVGvY~~~~----RlW-RiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve  109 (111)
T PF14783_consen   59 ALANGTVGVYDRSQ----RLW-RIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE  109 (111)
T ss_pred             EecCCEEEEEeCcc----eee-eeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence            99999999987643    111 222222 25555443   34443 588888888764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.70  E-value=1.8  Score=42.41  Aligned_cols=137  Identities=14%  Similarity=0.093  Sum_probs=77.4

Q ss_pred             ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC--------cceEEEeecccCCc-cEEEEEecCCeE
Q 001358          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENI-HFIFSISVDGKI  511 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~i~~~~~~~~-~~l~s~~~dg~i  511 (1092)
                      ..+.+.-..+|+|+  +++-.-.|-.- +.....|..-.-+.+|.        .--+.++|.  .+. .+.+.-+.+-.|
T Consensus       108 knR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYEV  182 (310)
T ss_pred             hcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccc--ccCcEEEEEccCceEE
Confidence            34667778899999  43322122111 11111222222222332        223445564  233 344555667778


Q ss_pred             EEEEcC--CC-----CceEEecC----CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc
Q 001358          512 KAWLYD--SL-----GARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  580 (1092)
Q Consensus       512 ~vwd~~--~~-----~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  580 (1092)
                      .-||.+  ++     +.+..+..    .......+++..+|+..+++-.    .++|+..|+.+|+.+..+.-..   ..
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~q  255 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQ  255 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cc
Confidence            778743  22     22222222    1112345666778888777764    5569999999999999998876   88


Q ss_pred             eEEEEEcCC
Q 001358          581 VSVVHFDTA  589 (1092)
Q Consensus       581 v~~~~~~~~  589 (1092)
                      +++++|...
T Consensus       256 itsccFgGk  264 (310)
T KOG4499|consen  256 ITSCCFGGK  264 (310)
T ss_pred             eEEEEecCC
Confidence            999999754

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.62  E-value=2.5  Score=41.53  Aligned_cols=47  Identities=23%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC
Q 001358          807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  853 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  853 (1092)
                      .+++..+|.+.++.- .++|.-.|..+|+.+..+.-+...|++++|--
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            455566777766664 68999999999999999998999999999964

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.62  E-value=3.2  Score=42.64  Aligned_cols=171  Identities=13%  Similarity=0.192  Sum_probs=107.9

Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      +.+....+.++.|+| +.+.|++......-.|+=...|+.+.++.- --.....+.+..+|++.++--.++.+.+..++.
T Consensus        81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            344556699999999 777777777777777776677888877652 122345688888888888888899999998876


Q ss_pred             Ccee-eeeeeecCCCCcCC-CCCceEEEEecCCCEEEEEeCC-cEEEEEcCCce-eeee-eccCC-------CcCEEEEE
Q 001358          918 WGIQ-TCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLKQ-WFPIS-------SVPISQAT  985 (1092)
Q Consensus       918 ~~~~-~~~~~~~~~~~~~~-~~~v~~l~~s~dg~~la~~~d~-~v~lwd~~~~~-~~~~-~~~~h-------~~~v~~l~  985 (1092)
                      .... .....+..-+.... ......+||.|.+..|..+.+. -+.||.++.+. .+.. ....+       -..|+++.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            5321 11111111111111 2357899999999988887554 46666665332 1110 01111       23567777


Q ss_pred             Eec-CCCEEEEEeCCCcEEEEECCCC
Q 001358          986 FSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       986 fs~-dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      |.+ .+.+|+-+.+++.+.-.|....
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCCC
Confidence            875 4556666666777777776644

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.61  E-value=0.032  Score=54.19  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=71.1

Q ss_pred             EEEEE-eCCeEEEEEcCCceee-EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-CCeEEE
Q 001358          816 YLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGL  892 (1092)
Q Consensus       816 ~l~~~-sdg~i~iwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l  892 (1092)
                      -+++| ++|.|.+|........ .....-...|-++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++..+
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence            34444 5899999987622211 11111223333333333356699999999999999999999888888888 677777


Q ss_pred             EEcCCCCEEEEE--eCCCcEEEEEcCC
Q 001358          893 VFSDALNILVSS--GGDAQIFVWDVDG  917 (1092)
Q Consensus       893 ~~spdg~~l~s~--s~Dg~i~iwd~~~  917 (1092)
                      ..+..++.++++  |.|..++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchhhhhcchhh
Confidence            777777788887  8888888888875

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.58  E-value=1.9  Score=47.06  Aligned_cols=253  Identities=10%  Similarity=0.049  Sum_probs=106.1

Q ss_pred             CccEEEEEe-cCCeEEEEEcCCCC--c--eEEecC---CC----CceEEEEEecCCCEEEEEec--CCCCceeEEEEeCC
Q 001358          498 NIHFIFSIS-VDGKIKAWLYDSLG--A--RVDYDA---PG----LGCTRMAYSANGRRLFSCGT--SKEGESFLVEWNES  563 (1092)
Q Consensus       498 ~~~~l~s~~-~dg~i~vwd~~~~~--~--~~~~~~---~~----~~i~~~~~s~dg~~l~~~~~--~~~~~~~i~iwd~~  563 (1092)
                      +.++|+..+ ..++|.|.|+.+.-  +  ...++.   ..    .....+-.-|+|+.++++-.  ++++.+-+.+.|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345676666 67889999987432  1  112221   00    12233445589988887654  34556678899988


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCceEEEEeCCCCCC
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      +.+.............--+.+.+.|..+.+++..                    ...++.+||+.+.+.++++.......
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            8888877765442223456678888888888854                    23679999999999999998764322


Q ss_pred             CCceEEEc--cCCCEEEEEeC-CCeEEEEEC-CCCCeee--ecccccccceeeeecCC-cccccccccCCceeecCCCCC
Q 001358          624 ENPRICFN--KNGTLLAVIAN-ENRIKILET-PESNSVD--AAGVLSDNLRKLSVNPI-STVTGAGIANGSVSVNEDPKE  696 (1092)
Q Consensus       624 ~v~~v~~s--~~~~~l~~~~~-dg~i~iw~~-~~~~~~~--~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~  696 (1092)
                      ....+.|.  |+..+-++++. ..+|..|-- ..+....  .+......+..-.+-+. ....++.+-.-.+.+    |.
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i----Sl  321 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI----SL  321 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-----T
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE----cc
Confidence            34456665  44444444332 344544433 3332111  11100000000000000 000000000001112    45


Q ss_pred             Ccccc-eeeccccccceeceeec-cCccceecccCCc------------cccccEEEEEEecCCcEEEEeec
Q 001358          697 DVKPE-ISVEAENKSEVEKPLFA-RPSECQSLLLPSK------------VKANKISRLTYNNGGQAIFALAS  754 (1092)
Q Consensus       697 d~~~l-~s~~~d~~i~~w~~~~~-~~~~~~~~~~~~~------------~~~~~i~~l~~s~~g~~l~~~~~  754 (1092)
                      |.++| +++-..|.+|.||+... .+.....+.+...            .-.+...-+..|-||++|..+.+
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            66655 56677899999997532 2222222222111            11223356778888888877654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.47  E-value=0.064  Score=38.41  Aligned_cols=31  Identities=19%  Similarity=0.379  Sum_probs=28.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEEcc
Q 001358          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  426 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~  426 (1092)
                      ...|.+++|+|...+||.++.+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4579999999999999999999999999994

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.45  E-value=1.2  Score=52.65  Aligned_cols=234  Identities=12%  Similarity=0.084  Sum_probs=129.3

Q ss_pred             cCCCEEEEEe-C------CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-C-----eEEEEEcCCc
Q 001358          812 KNDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-S-----TILIYNARSS  876 (1092)
Q Consensus       812 ~dg~~l~~~s-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-g-----~v~iwd~~~~  876 (1092)
                      ..+.++++|+ .      ..+..||..++.-..  .+. ....-.++++.  ++.+.++|+.| |     ++..||..+.
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence            3455555554 2      348888888764332  222 22233455555  56788899999 3     7788888776


Q ss_pred             ee--eEeeccccCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358          877 EV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       877 ~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      +=  +..+...........  -+|.+.|+||.||.     |-.||..+.+......+...        .-..-.-.-+|+
T Consensus       360 ~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~  429 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK  429 (571)
T ss_pred             ceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence            42  223322222222222  27889999999974     67788777553321111111        112233345666


Q ss_pred             EEEE-EeC------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCc-----EEEEECCCCceEEeec
Q 001358          950 RFLL-VHE------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-----LSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       950 ~la~-~~d------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~-----i~vwd~~~~~~~~~~~ 1017 (1092)
                      +.++ |.+      .++..||..+..........-...-.. .-.-++...+.||.|+.     |..||..+.+....- 
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-  507 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-  507 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-
Confidence            6666 323      358889988776443211111111112 23457788888888863     777888877665221 


Q ss_pred             cccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCC
Q 001358         1018 STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1072 (1092)
Q Consensus      1018 ~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~ 1072 (1092)
                         .....     .....++..  ++...++|+.||     +|..||.  ...+|...++
T Consensus       508 ---~m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp--~~d~W~~~~~  555 (571)
T KOG4441|consen  508 ---PMTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP--ETDTWTEVTE  555 (571)
T ss_pred             ---cCccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCC--CCCceeeCCC
Confidence               11111     111112222  468899999887     5667765  5566877766

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.29  E-value=0.046  Score=39.12  Aligned_cols=33  Identities=24%  Similarity=0.426  Sum_probs=29.4

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCc
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK  369 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~  369 (1092)
                      ..|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus        12 ~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   12 SRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            4799999999998 8999999999999998 5554

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.20  E-value=5.1  Score=48.76  Aligned_cols=204  Identities=12%  Similarity=0.098  Sum_probs=118.2

Q ss_pred             CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC--------eEEEEEcC---------------CCCCEEEEEeCCCeEE
Q 001358          813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL  869 (1092)
Q Consensus       813 dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~v~  869 (1092)
                      ++.++++..++.|.-.|..+|+.+.++......        .+.+++..               ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            454444444788888999999888776543211        12233321               0234788899999999


Q ss_pred             EEEcCCceeeEeeccccCCeE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEEcCCCceeeee
Q 001358          870 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR  924 (1092)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--dg~~l~s~s~----------Dg~i~iwd~~~~~~~~~~  924 (1092)
                      -.|.++|+.+..+.. .+.|.             .+.-+|  .+..++.++.          +|.|+-+|..+|+..-..
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998877642 22211             111112  1345555542          688999999998854322


Q ss_pred             eeecCCCCcC---------CCCCc-eEEEEecCCCEEEEE-------------------eCCcEEEEEcCCceeeeeecc
Q 001358          925 SLQTPDGVMT---------LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP  975 (1092)
Q Consensus       925 ~~~~~~~~~~---------~~~~v-~~l~~s~dg~~la~~-------------------~d~~v~lwd~~~~~~~~~~~~  975 (1092)
                      -...+.....         -...+ ...++.++..++...                   ..+.|.-.|.++|+..-.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            1111100000         00111 234555555554431                   123466678888887766544


Q ss_pred             CC--------CcCEEEEEEec-CCC---EEEEEeCCCcEEEEECCCCceEEeec
Q 001358          976 IS--------SVPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       976 ~h--------~~~v~~l~fs~-dg~---~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      .|        .....-+.+.. ||+   .++.++.+|.+.+.|-++|+.+....
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            22        11122233433 664   78999999999999999999987643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.19  E-value=10  Score=45.86  Aligned_cols=122  Identities=13%  Similarity=-0.016  Sum_probs=80.0

Q ss_pred             EEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC-CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceEEeeccc
Q 001358          942 IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL-EVQCRILST 1019 (1092)
Q Consensus       942 l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~ 1019 (1092)
                      .|+.|-..++++|....+++||+...+.++.....+ ...|+.+.+  .+..+++|...-+|.++..... +.+-.+. .
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fa-d 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFA-D 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEe-C
Confidence            567787779999999999999999888777655444 566777775  4556777776666666555443 3332332 1


Q ss_pred             cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCccccCCCCCc
Q 001358         1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1075 (1092)
Q Consensus      1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 1075 (1092)
                      ...|.     .|..   ++.- |-..+|.|..=|.+.+-.++..-++-....|.+.
T Consensus      1016 D~~pR-----~Vt~---~~~l-D~~tvagaDrfGNi~~vR~P~d~~e~~~edpt~~ 1062 (1205)
T KOG1898|consen 1016 DPVPR-----HVTA---LELL-DYDTVAGADRFGNIAVVRIPPDVSEEASEDPTEL 1062 (1205)
T ss_pred             CCccc-----eeeE---EEEe-cCCceeeccccCcEEEEECCCcchhhhccCCccc
Confidence            22221     1332   2222 4578999999999999999877766655555553

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.02  E-value=4.9  Score=41.25  Aligned_cols=191  Identities=12%  Similarity=0.069  Sum_probs=112.4

Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      .-...+.|..+|..+-+++.-|.-.+                    +.+++.+|+......++.   ..--..++...|.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d~  101 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLPP---RYFGEGITILGDK  101 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-TT---T--EEEEEEETTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECCc---cccceeEEEECCE
Confidence            34567888888888888877764333                    334556666555555542   3333456666565


Q ss_pred             CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-----CCe
Q 001358          815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KRV  889 (1092)
Q Consensus       815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-----~~V  889 (1092)
                      -+.++--++...+||..+.+.+.++.- .+.=..++.   |++.|+.......++++|..+-+....+.-..     ..+
T Consensus       102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred             EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence            555555689999999999999988863 356666773   56677777767789999998877666554321     234


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC-------CCcCCCCCceEEEEecCCCEEEE
Q 001358          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .-|.+- +|...|=.=....|..-|..+|+.....-+....       .......-...+|+.|.+..+.+
T Consensus       178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v  247 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV  247 (264)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred             EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence            446664 6666665555566777777777655432221110       11111235789999988776665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.99  E-value=12  Score=45.44  Aligned_cols=106  Identities=13%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             EEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeeEeecc
Q 001358          808 FALSKNDAYLFSASGGVISLYIVMTFKTILTI--MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG  884 (1092)
Q Consensus       808 ~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~  884 (1092)
                      .|+.|...++.+|-+..+++||+...++++..  +.....|+.+.+   .+..+++|...-.|.++..+. ++.+..+..
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            46678777888888999999999877666543  323566777777   455777777666665543332 333444432


Q ss_pred             --ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358          885 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       885 --h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                        -...|+++.+- |-..+|.+..=|.+.+-.+..
T Consensus      1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred             CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence              22346666665 445677777767666655543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=0.082  Score=62.67  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=75.4

Q ss_pred             cEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001358          500 HFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  578 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  578 (1092)
                      ..++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-.    +|.|.+||...++..+.+..+....
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence            4688888888888887765322 1222334568999999999999998865    6779999999999999988877444


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      ..+..+.+..++..++++...|.  +|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            55555666667777888777776  5543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.91  E-value=6.3  Score=43.99  Aligned_cols=139  Identities=14%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             CCeeEEEEecCCCEEEEEe------------C-CeEEEEEcCC--ce--eeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358          803 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FK--TILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s------------d-g~i~iwd~~~--~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                      .....|+|.++|+++++-.            . +.|.+++-.+  |+  ....+.........+++.+ ++ +++ ++..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence            3456899999999887752            1 2677776442  32  2234443444568899998 77 444 4444


Q ss_pred             CeEEEEEcCCc-----e--e-eEeecc----ccCCeEEEEEcCCCCEEEEEeCC-------------------CcEEEEE
Q 001358          866 STILIYNARSS-----E--V-ISKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD  914 (1092)
Q Consensus       866 g~v~iwd~~~~-----~--~-~~~l~~----h~~~V~~l~~spdg~~l~s~s~D-------------------g~i~iwd  914 (1092)
                      ...++.|....     +  . +..+..    +......++|.|||.+.++.+..                   |.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            43334454321     1  1 122322    13447789999999988866621                   3344444


Q ss_pred             cCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .++++.   ..+.  .+..    ....++|+++|+++++
T Consensus       171 pdg~~~---e~~a--~G~r----np~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       171 PDGGKL---RVVA--HGFQ----NPYGHSVDSWGDVFFC  200 (367)
T ss_pred             cCCCeE---EEEe--cCcC----CCccceECCCCCEEEE
Confidence            444331   1221  2222    3568999999999887

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.54  E-value=13  Score=45.10  Aligned_cols=94  Identities=10%  Similarity=0.034  Sum_probs=56.2

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee
Q 001358          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      ....|..+.++|+|++++..+...|.|..+.. +.....+.+....|.|=.+.- +..++                    
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------  141 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------  141 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence            44678999999999999999877777766632 111111221112222222211 11111                    


Q ss_pred             EeeccccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCC
Q 001358          880 SKLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spd---g~~l~s~s~Dg~i~iwd~~~  917 (1092)
                        ...+...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence              1124456778888875   47888888889999999875

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.53  E-value=0.87  Score=52.98  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=78.2

Q ss_pred             ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEc-----
Q 001358          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY-----  516 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~-----  516 (1092)
                      ...-+.-|.-++  ..+.-+....+.|||...+...++-. ...+.|.++.|...++++.+++.+..+.|.++--     
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            444555555555  44444455689999999887554332 3578899999999999999999999999999843     


Q ss_pred             CCCCc----eE--EecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          517 DSLGA----RV--DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       517 ~~~~~----~~--~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ....+    +.  .+.. ..++|...+|.++|..++.++.      .+.++|..
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence            11111    11  2222 3367889999999998877643      48888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.42  E-value=0.067  Score=61.82  Aligned_cols=131  Identities=16%  Similarity=0.198  Sum_probs=83.7

Q ss_pred             ecccCCCCceEEeec----CCCceEEEEEcCcCcEEEEecCC--CCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358          329 TLIEGSSSPMSMDFH----PVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~s----pdg~~llasg~~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      .++|.+++|-.++|-    |.+.. +     -|...|||++-  |+......++              ....-...+.-+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~~-~-----vg~lfVy~vd~l~G~iq~~l~v~--------------~~~p~gs~~~~V  186 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGRR-L-----VGELFVYDVDVLQGEIQPQLEVT--------------PITPYGSDPQLV  186 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHHH-H-----hhhhheeehHhhccccccceEEe--------------ecCcCCCCccee
Confidence            456777788888883    44431 2     27788998863  4444332222              122334455666


Q ss_pred             EECC---CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe-----------eCCCCcEEEEEEeCCCcEE
Q 001358          403 VWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       403 ~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~-----------s~d~~~l~l~s~~~d~~i~  468 (1092)
                      .|.|   +.-++..+-.+++|++.++.+...  .  -+.+|...+..++|           ||||+  .++.+..||.++
T Consensus       187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~  260 (1283)
T KOG1916|consen  187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVG  260 (1283)
T ss_pred             eecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccc
Confidence            6665   667777787888888877765432  1  24568777666654           88999  889999999888


Q ss_pred             EEECC-----CCceeEEEecCC
Q 001358          469 VWDAV-----TGSRTYSFEGHG  485 (1092)
Q Consensus       469 vwd~~-----~~~~~~~~~~~~  485 (1092)
                      .|.+-     .-+|++..+.|.
T Consensus       261 f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCC
Confidence            88643     234566666676

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.31  E-value=0.91  Score=54.51  Aligned_cols=93  Identities=15%  Similarity=0.246  Sum_probs=63.3

Q ss_pred             CcCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------C--ceEEeecc-ccccCCCCccCcccceEEEECCC--C
Q 001358          978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILS-TAYLRPTTSCLHVYPHAIAAHPL--K 1042 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~----------~--~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~p~--~ 1042 (1092)
                      .-.|..+.++++|++|+..|..| |.|-.+..          |  ...|+..+ ...+-.  .+..+....+.|||.  +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence            56788999999999999988765 55555542          1  22343321 111111  133355568899995  3


Q ss_pred             CCEEEEEeCCCcEEEEecCCCCCccccCCCC
Q 001358         1043 PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
                      +..|++-+.|+++++||+.+...-|.+.+-.
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~  191 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQVLSLS  191 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence            5789999999999999998877767777633

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=94.06  E-value=2  Score=51.06  Aligned_cols=153  Identities=8%  Similarity=-0.022  Sum_probs=73.7

Q ss_pred             CccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC--CceeEEEEeCCCCeEEEE
Q 001358          498 NIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       498 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~  570 (1092)
                      ++.+++.|+.++     .+..||..+..-...-..+.......+..-+++..+.||....  .-..+..||+.+++....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            456777777652     3666776654322111111111111222345666666663222  125688999887655332


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      -.... ..... ++ ...++..++.|+.+        ..+.+||..+.+....-.....  .....+..-+++.++.|+.
T Consensus       422 ~~~p~-~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~  496 (534)
T PHA03098        422 SPLPI-SHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD  496 (534)
T ss_pred             CCCCc-cccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence            21111 01111 12 22244555556532        2388899888765443222111  1111112236777777765


Q ss_pred             C-----CeEEEEECCCCC
Q 001358          643 E-----NRIKILETPESN  655 (1092)
Q Consensus       643 d-----g~i~iw~~~~~~  655 (1092)
                      +     ..+.+||..+.+
T Consensus       497 ~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        497 KYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcccceeEEEeCCCCE
Confidence            4     467788877654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.98  E-value=1.4  Score=51.47  Aligned_cols=122  Identities=8%  Similarity=0.086  Sum_probs=76.4

Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec-cccCCeEEEEEc--CCCCEEEEEeCCCcEEEEEc
Q 001358          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV  915 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~l~s~s~Dg~i~iwd~  915 (1092)
                      +...-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|.  |||+.+++.|..+.|.++.-
T Consensus        25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            333334455555555 45555555555689999999876432222 357889999985  78999999999999999864


Q ss_pred             CC----CceeeeeeeecC--CCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEc
Q 001358          916 DG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  964 (1092)
Q Consensus       916 ~~----~~~~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~  964 (1092)
                      ..    ........++..  ..+.+  .+|....|.+||.++++ .++++.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV~-sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVVG-SGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEEE-eCCEEEEECC
Confidence            21    111111122221  11221  36889999999986554 4667888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.98  E-value=2.2  Score=41.91  Aligned_cols=150  Identities=11%  Similarity=0.095  Sum_probs=83.6

Q ss_pred             CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCC---cEEEE-EcC----C
Q 001358          899 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY-EAE----E  966 (1092)
Q Consensus       899 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~---~v~lw-d~~----~  966 (1092)
                      +.|..+.....|.+|++...+......+.+.       +.|..++++.-|++|++-    ...   .+++| ++.    .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~  101 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE  101 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence            4444445667799999995443333333333       258899999999999993    122   46665 222    1


Q ss_pred             ceeeeeeccCC---------------------CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-EEeeccccccCC
Q 001358          967 LTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCRILSTAYLRP 1024 (1092)
Q Consensus       967 ~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~-~~~~~~~~~~~~ 1024 (1092)
                      ...++....||                     +.++.+++-.|-..-|+.|+ ++.+.+|.+..... ...+....+...
T Consensus       102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~  180 (215)
T PF14761_consen  102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERS  180 (215)
T ss_pred             CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhh
Confidence            22222212232                     44566666666433445454 56899998876655 322222222111


Q ss_pred             C-CccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358         1025 T-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1025 ~-~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      . .|...+.+..+++.   +.++|.. ++-.+++..+
T Consensus       181 l~~~~~~~~p~~v~ic---~~yiA~~-s~~ev~Vlkl  213 (215)
T PF14761_consen  181 LIDHIDNFKPTQVAIC---EGYIAVM-SDLEVLVLKL  213 (215)
T ss_pred             hhheecCceEEEEEEE---eeEEEEe-cCCEEEEEEE
Confidence            1 13344556667776   3555555 5666777765

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.94  E-value=6.2  Score=40.01  Aligned_cols=193  Identities=12%  Similarity=0.095  Sum_probs=125.3

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeee
Q 001358          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  924 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~  924 (1092)
                      .-..++-+| ||..-+++...|.|--.|-.+|+....--+....-..+..-|||..-++-+.. .|.-.|-++.+...  
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--  138 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--  138 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence            345677888 88888888888888888888988766655555666778888999877764433 45555665555333  


Q ss_pred             eeecCCCCcCCCCCceEEEEecCCCEEEEEeC----------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEE
Q 001358          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1092)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1092)
                       ...+..+..  .......|.++|.+-.++..          +.|++|+..           .......||..|||...+
T Consensus       139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy  204 (353)
T COG4257         139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY  204 (353)
T ss_pred             -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence             222222222  35778999999999888543          235555543           344567789999999988


Q ss_pred             EEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358          995 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus       995 t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      +.-.+..|..-|..++. ...+.....+..+       +..+-.+|+ +..-++....+.++-+|.....
T Consensus       205 aslagnaiaridp~~~~-aev~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         205 ASLAGNAIARIDPFAGH-AEVVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             EeccccceEEcccccCC-cceecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc
Confidence            87778888888877772 2223222221111       123445564 6777777777777777765433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.94  E-value=0.19  Score=49.04  Aligned_cols=106  Identities=12%  Similarity=0.050  Sum_probs=64.1

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEE-eeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~-~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      -+..+++|+.+|.|.+|++..-......  ...-...|.++. -..++.  +..+++.|+.|+.|++.-++.+.....|.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence            3568899999999999998732111100  111122333332 233344  67888999999999999998887777676


Q ss_pred             -cceEEEeecccCCccEEEEE--ecCCeEEEEEcCC
Q 001358          486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS  518 (1092)
Q Consensus       486 -~~v~~i~~~~~~~~~~l~s~--~~dg~i~vwd~~~  518 (1092)
                       .++......  ..+.+++.+  |.|..++.|++..
T Consensus       145 ~~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence             444433332  123455555  5666666666543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.36  E-value=1.2  Score=48.88  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=71.2

Q ss_pred             CcCEEEEEEecCCCEEEEEeCCCcEEEEE---------CCCCc--eEEeeccccccCCCCccCcccceEEEECCCC--CC
Q 001358          978 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTAYLRPTTSCLHVYPHAIAAHPLK--PT 1044 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~--~~ 1044 (1092)
                      .-.|..+..|+.|..++-.|.+|.+.++=         +++|+  ..|+..... ..-...+.++....++|||+.  ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~ltl~Qa~WHP~S~~D~  181 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTSLTLKQAAWHPSSILDP  181 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCceeeeeccccCCccCCc
Confidence            45677888899999999999998544331         23342  233332111 000012345666778999963  46


Q ss_pred             EEEEEeCCCcEEEEecCCCCCccccCCCCCcccCCCCCCcccccC
Q 001358         1045 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRA 1089 (1092)
Q Consensus      1045 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1092)
                      .|+.-+.|..|++|++++....|..++|.-..+.-...-+=|+.+
T Consensus       182 hL~iL~sdnviRiy~lS~~telylqpgepgRS~tn~Si~sFGe~~  226 (741)
T KOG4460|consen  182 HLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPTNVSILSFGEEE  226 (741)
T ss_pred             eEEEEecCcEEEEEecCCcchhhccCCCcCCCCccceeeccCCcc
Confidence            788889999999999998888888877665544433333444443

>PHA03098 kelch-like protein; Provisional

Probab=93.28  E-value=2.6  Score=50.08  Aligned_cols=196  Identities=11%  Similarity=0.005  Sum_probs=90.8

Q ss_pred             CCCCEEEEEeCCC------EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCC
Q 001358          406 PDGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT  474 (1092)
Q Consensus       406 pdg~~las~~~d~------~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~  474 (1092)
                      .++..++.|+.++      .+..||..+++-.. ...+.........+  .-+++  +++.||.+     ..+..||..+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence            3556666665432      47788887754321 11111111111222  23555  56667655     3577888877


Q ss_pred             CceeEE--EecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358          475 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       475 ~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                      ++-...  +....... +++.   -++.+.+.|+.+      ..+..||..+.+=...-..+.......+...+++..+.
T Consensus       368 ~~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~  443 (534)
T PHA03098        368 SKWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI  443 (534)
T ss_pred             CceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence            653321  11111111 1111   145666777632      34777877654322111111111111233345666666


Q ss_pred             EecCCCC----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceE
Q 001358          547 CGTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL  613 (1092)
Q Consensus       547 ~~~~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~  613 (1092)
                      ||.....    -..+.+||+.+++....-.... .......+.+  ++..++.|+.+     +.+.+||..+.+..
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             CCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            6543221    2348899998776543211111 0111222222  55556666643     46788887776543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.18  E-value=19  Score=41.01  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=41.9

Q ss_pred             eEEEEecCCCEEEEEeC--CcEEEEEcCCc--eeeeeeccCCCcCEEEEEEecCCCEEEEEeC
Q 001358          940 THIQFHKDQTRFLLVHE--THLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       940 ~~l~~s~dg~~la~~~d--~~v~lwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~  998 (1092)
                      --+||.|....+|++++  +.|.||.+...  ..++.+.-....+...++|-.|.-+|+..|.
T Consensus       342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk  404 (671)
T PF15390_consen  342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK  404 (671)
T ss_pred             ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence            35899999999999655  57999988642  2233333334678888999988877776653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.93  E-value=3.4  Score=44.69  Aligned_cols=145  Identities=8%  Similarity=0.041  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--e-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee
Q 001358          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS--E-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  922 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~  922 (1092)
                      .+.+-|.. .++.|+ +...|.+.=|-....  . ++..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus        25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            34555654 333333 333454555554432  1 222222356799999999999999999999999999986543222


Q ss_pred             eeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358          923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      ........+.    ..|....|+.. .-+|...+..+-+|-....+..-.....|...|.--.|.++-+.++-++
T Consensus       103 ~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  103 EYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            1111111111    24888888877 6677767777778876544433333556788888888999887655443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.90  E-value=7.2  Score=45.35  Aligned_cols=185  Identities=12%  Similarity=0.140  Sum_probs=99.2

Q ss_pred             eEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe--e--ccccCCeEEEEEcCCCC
Q 001358          824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~spdg~  899 (1092)
                      .|+||++. |..+..+.-..+.+..+.|+. + .-|++...+|++++|++.. +.+..  .  +.....|..+.|..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence            37888874 555555443444888999996 4 4666688999999999864 32222  1  22233455566666664


Q ss_pred             EEEEEeCCCcEE-EEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE--EEEEeC--CcEEEEEcCCceeeeeec
Q 001358          900 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHE--THLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       900 ~l~s~s~Dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~--la~~~d--~~v~lwd~~~~~~~~~~~  974 (1092)
                      .+.+.  +|.+. +-+++.....   .+...++...   .-.+....+++..  +...-+  -...++..+.+......+
T Consensus       141 avlt~--~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  141 AVLTV--SGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EEEec--CCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            44443  34333 3333331111   1111111111   1133333333221  111111  011222222221111111


Q ss_pred             cCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358          975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       975 ~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      ....+.+..+..||+.++|+--..+|.|.+-+.+..+..+.+....
T Consensus       213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~  258 (829)
T KOG2280|consen  213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD  258 (829)
T ss_pred             CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC
Confidence            1113578889999999999999999999999999988888887433

>PRK13684 Ycf48-like protein; Provisional

Probab=92.87  E-value=17  Score=39.80  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=92.3

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1092)
                      ...+.++.+.+++.+++++..|.+..-.-..++.-.. .......++++++.+ +++.+++| ..|.+++=..+.|..-.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence            4567889999999998888888655321112221222 223446789999999 78777665 46766532344443222


Q ss_pred             eecc----ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC
Q 001358          881 KLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  956 (1092)
Q Consensus       881 ~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d  956 (1092)
                      ....    -...+.++++.|++..++ ++.+|.|. ...+.++  ....+....+..   .....+.|..+++.++++..
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~  322 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQR  322 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence            1111    123578899999877655 55677554 4445433  111221111111   24778888889999999998


Q ss_pred             CcEEEEEc
Q 001358          957 THLAIYEA  964 (1092)
Q Consensus       957 ~~v~lwd~  964 (1092)
                      |.|.-|+-
T Consensus       323 G~il~~~~  330 (334)
T PRK13684        323 GVLLRYVG  330 (334)
T ss_pred             ceEEEecC
Confidence            88877763

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.76  E-value=11  Score=40.02  Aligned_cols=170  Identities=10%  Similarity=0.061  Sum_probs=94.9

Q ss_pred             eEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCC----CEEEEEe-CCCeEEEEEcCCceeeEeeccc-------
Q 001358          824 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGH-------  885 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~lasg~-~dg~v~iwd~~~~~~~~~l~~h-------  885 (1092)
                      +|.+||+.+.+.++++.-+      ......+.+...++    .++..+. ..+-+.|+|+.+++..+.+..+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5889999999988876432      34567777765222    2444333 3358999999998754443321       


Q ss_pred             ------------cCCeEEEEEcC---CCCEEEEEeCCCcEEEEEcCCCceeee-----e----eeecCCCCcCCCCCceE
Q 001358          886 ------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQTC-----R----SLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       886 ------------~~~V~~l~~sp---dg~~l~s~s~Dg~i~iwd~~~~~~~~~-----~----~~~~~~~~~~~~~~v~~  941 (1092)
                                  .+.+..++.+|   |+++|....-.+ -++|.+.+......     .    .++.. +...  .....
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence                        23366677765   666777665544 34555443211100     0    00110 0000  13567


Q ss_pred             EEEecCCCEEEE-EeCCcEEEEEcCCce---eeeeec-cCC-CcCEEEEEEec--CCCEEEEEe
Q 001358          942 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWF-PIS-SVPISQATFSC--DCRMVFTSF  997 (1092)
Q Consensus       942 l~~s~dg~~la~-~~d~~v~lwd~~~~~---~~~~~~-~~h-~~~v~~l~fs~--dg~~l~t~s  997 (1092)
                      ++++++|.+..+ ...+.|..|+..+.-   ....+. ... -..+..+.+.+  +|.+.+.+.
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            899999998888 578899999987621   111111 122 35778888988  777666553

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.61  E-value=15  Score=38.32  Aligned_cols=214  Identities=12%  Similarity=0.129  Sum_probs=123.4

Q ss_pred             ceeEEEeeCCCCcEEEEEEeCCCcEEEEECC------CC-ceeEEEec-----CCcceEEEeecccC------C----cc
Q 001358          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAKE------N----IH  500 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~------~----~~  500 (1092)
                      .-+.++|+|.+.  +-++...-+...+||..      .. ..+-++..     .....+.+.|+...      +    ..
T Consensus        24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            457899999987  67777778889999986      12 22333332     12345555554321      1    12


Q ss_pred             EEEEEecCCeEEEEEcCCCCc-----eEEecC--CCCceEEEEEecC--CCEEEEEecCCCCceeEEEEeCCCCeEE--E
Q 001358          501 FIFSISVDGKIKAWLYDSLGA-----RVDYDA--PGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIK--R  569 (1092)
Q Consensus       501 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~--~~~~i~~~~~s~d--g~~l~~~~~~~~~~~~i~iwd~~~~~~~--~  569 (1092)
                      .++.+++||+|.-|...-...     ...+..  ...-...+++...  +.+|+.+-.   ..++|.++|-.-....  .
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence            478889999999997532222     122221  1223445666543  566766543   2567888875432211  0


Q ss_pred             EEeeccc--cCCc-----------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc----
Q 001358          570 TYQGLQL--QHNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK----  632 (1092)
Q Consensus       570 ~~~~~~~--~~~~-----------v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----  632 (1092)
                      .+.....  .-.+           |+-..-.++...=+.|..-|.|-+||. .|.+++++...+....-..++..|    
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            1111000  0000           111111222222333445578999997 578888887666555667777755    


Q ss_pred             --CCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358          633 --NGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       633 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                        .+.+|+---.||+|..||..+++.+..+..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence              467777777799999999998887766664

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.39  E-value=8.4  Score=38.02  Aligned_cols=112  Identities=12%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcC--CceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEE---E
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS------TILIY---N  872 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iw---d  872 (1092)
                      +...++-+..+.++++++.+.|.+|++.  ..+...+|..- +.|..++++. .|++|+|--.+.      .+|+|   +
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            3345555554555555678899999988  34556666643 7899999999 899999854332      55664   3


Q ss_pred             cC--Ccee-eEeeccc---------------------cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358          873 AR--SSEV-ISKLEGH---------------------SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       873 ~~--~~~~-~~~l~~h---------------------~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                      ..  ..+. ..++-||                     +.++.+++-.|-..-|+.|+ ++.+.+|.+...
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            22  1111 1122232                     24566777777443444444 456999988763

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.33  E-value=4.3  Score=45.33  Aligned_cols=103  Identities=9%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             CCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEcCCC--ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358          887 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s-----------~Dg-~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+  .......+.....      ....+++.++| +++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~------~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS------MVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC------CccceeEecCC-EEE
Confidence            3466789999998887653           223 5777765432  2222222222111      35789999999 544


Q ss_pred             EEeCCcEEEE-EcCC-------ceeeeeeccC----CCcCEEEEEEecCCCEEEEEe
Q 001358          953 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       953 ~~~d~~v~lw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      +. ...|..| |...       .+.+..-+..    +......++|.|||.+.++-+
T Consensus        87 ~~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        87 AT-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             eC-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            43 4445544 4431       1112121211    234577899999998777655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.26  E-value=23  Score=39.69  Aligned_cols=201  Identities=12%  Similarity=0.017  Sum_probs=105.2

Q ss_pred             EecCCCEEEEEeCCeEEEEEcCCceeeEEecCCC--CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-
Q 001358          810 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-  886 (1092)
Q Consensus       810 ~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-  886 (1092)
                      ...|++.++...+|.+.-.|..+++.+.......  ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            4456766666667888888888887664433221  2333333333 565 6778899999999998999888777555 


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe--CCcEEEEEc
Q 001358          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA  964 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--d~~v~lwd~  964 (1092)
                      -.+..-..-.++..++ .+.++.+.-.+-.+++..-..........     .+..-....++...+...  ++.+.-.|.
T Consensus       143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence            1122222222332222 23566666666665543221111110000     011111133444433333  445666677


Q ss_pred             CCceeeeeeccCCCcC---EEEEEEec-----CCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          965 EELTCLKQWFPISSVP---ISQATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~---v~~l~fs~-----dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      .+|.........+...   +.......     .+.-+..++.++.+.-.+..+|+.+.++..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            7776665422111111   10011111     112235666778888889999999888774

>PHA02790 Kelch-like protein; Provisional

Probab=92.19  E-value=5.9  Score=46.07  Aligned_cols=184  Identities=11%  Similarity=-0.010  Sum_probs=93.4

Q ss_pred             CCCEEEEEe-C-----CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCce--eeE
Q 001358          813 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS  880 (1092)
Q Consensus       813 dg~~l~~~s-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~--~~~  880 (1092)
                      ++.++++|+ +     ..+..||..+.+-..  .+.........++  - ++.+.+.|+.++  .+..||..+++  .+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455555554 2     246778877654322  2222222222222  3 677888888643  67888876543  222


Q ss_pred             eeccccCCeEEEEEcCCCCEEEEEeCCC---cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001358          881 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~  957 (1092)
                      .+.........+  .-+|+..+.||.++   .+..||..+++......+..+.        -...+..-+|++.++|  |
T Consensus       348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G  415 (480)
T PHA02790        348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R  415 (480)
T ss_pred             CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence            332111111222  23688888888654   4678888775533322221111        1122334566666665  3


Q ss_pred             cEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCce
Q 001358          958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1012 (1092)
Q Consensus       958 ~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~ 1012 (1092)
                      .+.+||..+.+-...-...+...-.+++ .-+|+..+.||.+     .++..||..+++.
T Consensus       416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            5778888766543221111111111222 3477888888765     3466777766544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.90  E-value=18  Score=37.73  Aligned_cols=251  Identities=11%  Similarity=0.084  Sum_probs=123.4

Q ss_pred             CceEEEccCCCEEEEEeCCCeEEEEECCCC-------Ceeeeccc-----ccccceeeeecCCcccccccccCCceeecC
Q 001358          625 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                      -..++++|.+.+-++....+...+||....       ..+-.+..     .....+.+.|+........+          
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~----------   94 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSG----------   94 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcC----------
Confidence            468999999888777777889999998621       11112211     11123333343222111111          


Q ss_pred             CCCCCcccceeeccccccceeceeeccC---ccceecccCCccccccEEEEEEec--CCcEEEEeec-CCeeEEeeecCC
Q 001358          693 DPKEDVKPEISVEAENKSEVEKPLFARP---SECQSLLLPSKVKANKISRLTYNN--GGQAIFALAS-NGVHLMWRWPRN  766 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~s~--~g~~l~~~~~-dg~i~lw~~~~~  766 (1092)
                      ........++.+++||+|.-|.......   .....  ........--..+++..  .+.+|.++.- +++|.+||-...
T Consensus        95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~--~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~  172 (336)
T TIGR03118        95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIV--VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR  172 (336)
T ss_pred             CCcccceeEEEEeCCceEEeecCcCCcccccccEEE--EccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence            0011123367889999999999543333   11111  11111122223455443  3555555543 578888775443


Q ss_pred             ccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecC--CC
Q 001358          767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMP--PS  843 (1092)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~--~~  843 (1092)
                      +....+......      +..+....-  +.-.+..--|+-..-.++++.=+.+ .-|.|-+||.. |..++++..  .-
T Consensus       173 ~~~~~g~F~DP~------iPagyAPFn--Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~L  243 (336)
T TIGR03118       173 PPPLPGSFIDPA------LPAGYAPFN--VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRL  243 (336)
T ss_pred             cccCCCCccCCC------CCCCCCCcc--eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcc
Confidence            322212111000      000000000  0000000000101111122111112 13679999985 777777742  22


Q ss_pred             CCeEEEEEcC-----CCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC------CeEEEEEcC
Q 001358          844 PTATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------RVTGLVFSD  896 (1092)
Q Consensus       844 ~~i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~------~V~~l~~sp  896 (1092)
                      +.-..|+..|     -.+.+|+---.||+|..||..+|+.+..+..-.+      .++.|+|-.
T Consensus       244 NaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       244 NAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             cCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            3445666544     2567888777899999999999998888775433      456677754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.52  E-value=5.7  Score=46.98  Aligned_cols=176  Identities=13%  Similarity=0.087  Sum_probs=93.8

Q ss_pred             CCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEE
Q 001358          814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  893 (1092)
Q Consensus       814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  893 (1092)
                      +.+++++..+.|.||+........    ...++..+...|   .+  +...|+.+..|.  .        .|+=.-..+.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p--~--------PHtIN~i~v~  109 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP--F--------PHTINFIKVG  109 (717)
T ss_pred             CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC--C--------CceeeEEEec
Confidence            788888999999999986432211    011112222222   11  122344333332  1        1221111122


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCc---------ee--eeeeeecCCCCcCCCCCceEEEEe--cCCCEEEEEeCC-cE
Q 001358          894 FSDALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-HL  959 (1092)
Q Consensus       894 ~spdg~~l~s~s~Dg~i~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~l~~s--~dg~~la~~~d~-~v  959 (1092)
                      .--+...|+.+.+||.|.+|.+++--         ..  .......+.-........+++++.  ...++||+++++ .|
T Consensus       110 ~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~V  189 (717)
T PF08728_consen  110 DLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEV  189 (717)
T ss_pred             ccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceE
Confidence            22345678888888888888653200         00  000000011111122468899998  888899997654 46


Q ss_pred             EEEEcCC--ceeeeeeccCCCcCEEEEEEecCC---C---EEEEEeCCCcEEEEECC
Q 001358          960 AIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       960 ~lwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      .||-...  .+........|...|-++.|-++.   .   +|++++-.|.+.+|++.
T Consensus       190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence            6654433  221111112356789999997754   2   78888899999998883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.44  E-value=0.29  Score=56.96  Aligned_cols=235  Identities=16%  Similarity=0.175  Sum_probs=122.6

Q ss_pred             CeEEEEEcC--CceeeEE-----ecCCCCCeEEEEEcCC--CCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEE
Q 001358          823 GVISLYIVM--TFKTILT-----IMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  893 (1092)
Q Consensus       823 g~i~iwd~~--~~~~~~~-----~~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  893 (1092)
                      |.+.|||+.  .|+....     .......+.-+.|.|.  +..++..+..+++|++....+... ..+.+|+..++.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            678888875  3433222     2222333344444431  456778888889999877765432 55566887776654


Q ss_pred             -----------EcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC---------CEEEE
Q 001358          894 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ---------TRFLL  953 (1092)
Q Consensus       894 -----------~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg---------~~la~  953 (1092)
                                 .||||+.+|.++.||.++.|.+.-......+++..-+.|..  .+-.|.-|...-         .++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence                       48999999999999999999876432223334443333332  122222233321         22334


Q ss_pred             EeC--CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC------------EEEEEeCCCcEEEEECCCCceEEeeccc
Q 001358          954 VHE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR------------MVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       954 ~~d--~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~------------~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      +.|  ..+++|.....+|+..+.   ...|..+. -+||+            .+++.+-|++|.+|.-..-   +.....
T Consensus       310 ttd~nre~k~w~~a~w~Cll~~~---~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a---~~~~vs  382 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCLLDKL---IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKA---QPLVVS  382 (1283)
T ss_pred             cccCCcceeEeeccchhhhhhhc---ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchh---hhhhhh
Confidence            433  458999887777763221   12333333 33332            1344556788888854331   111111


Q ss_pred             cccCCCCccCcccceEEEECCC--CCCEEEEEeC-CCcEEEEecCCCCCccccCCCCC
Q 001358         1020 AYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLT-NGEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1020 ~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~-dg~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                      .  +..  +.+|.+.-...+|.  +-..+.+|+. ...+.+|...-.+   +++.|.+
T Consensus       383 ~--~~~--~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~---g~ls~a~  433 (1283)
T KOG1916|consen  383 R--PHD--GHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEE---GWLSPAD  433 (1283)
T ss_pred             h--hhh--cceeccccccccCCCccccccccCCcchhhhhhhhhcccc---cccchhh
Confidence            1  111  22344333344442  1123444444 3456788775444   4455555

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.14  E-value=30  Score=38.78  Aligned_cols=150  Identities=8%  Similarity=0.024  Sum_probs=86.2

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee---
Q 001358          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ---  921 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~---  921 (1092)
                      ...+..++ ++.++++|..-..++-||--... .... ..-...++++.|.+++.+++.+ .+|.+ +|....+..-   
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence            34456677 77777766544333334432110 1111 2234568999999998887755 66654 4444443211   


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeec--cCCCcCEEEEEEecCCCEEEEEeCC
Q 001358          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~s~D  999 (1092)
                      ....+......    ..+.++.|.+++..++++..|.+.... ..|+.-....  ..-......+.|.++++.+++| .+
T Consensus       317 ~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~  390 (398)
T PLN00033        317 DFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND  390 (398)
T ss_pred             ceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence            11111111111    147899999999999999888776654 3444332222  2224578899998888777755 67


Q ss_pred             CcEEEE
Q 001358         1000 GTLSIH 1005 (1092)
Q Consensus      1000 g~i~vw 1005 (1092)
                      |.|.-|
T Consensus       391 G~il~~  396 (398)
T PLN00033        391 GVLLRY  396 (398)
T ss_pred             cEEEEe
Confidence            877654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.11  E-value=32  Score=39.07  Aligned_cols=67  Identities=13%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ++...-+..+.|+|.|||+ +|++--..|.|++++-.++.......+            ..............|+|+|+-
T Consensus        24 ~va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        24 VLLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EEECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence            3344445889999999997 677654469999998665542211111            000011136778899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.00  E-value=10  Score=36.84  Aligned_cols=100  Identities=16%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             CCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeE--EEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccC
Q 001358          813 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  887 (1092)
Q Consensus       813 dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~  887 (1092)
                      +|+++.+.+   ...|++||+.+++.+..-.-....+.  .+.-.  ++.+.+-...+|.-..+|.++.+++..+. -.+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence            556666665   35699999999988765432221111  11111  33455556778999999999988887765 333


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358          888 RVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       888 ~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .=+.++  .|++-|..++...+++.-|-++
T Consensus       132 eGWgLt--~d~~~LimsdGsatL~frdP~t  159 (262)
T COG3823         132 EGWGLT--SDDKNLIMSDGSATLQFRDPKT  159 (262)
T ss_pred             cceeee--cCCcceEeeCCceEEEecCHHH
Confidence            344444  3666677665555666666554

>PHA02790 Kelch-like protein; Provisional

Probab=90.97  E-value=10  Score=44.16  Aligned_cols=149  Identities=9%  Similarity=-0.016  Sum_probs=72.8

Q ss_pred             CccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358          498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       498 ~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                      ++.+.+.|+.++  .+..||..+.+-...-..+.......+..-+|+..+.||.++. ...+..||+.+.+-...-.-..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence            556777777543  4677776543221111111111122233446776667665332 3567889988776543211111


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEE
Q 001358          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE  650 (1092)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~  650 (1092)
                       .......+  .-++...+.|   |.+.+||..+.+....-.....  ....-+..-+++..++|+.+     ..+..||
T Consensus       397 -~r~~~~~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        397 -PHYKSCAL--VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             -ccccceEE--EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence             01111122  2234444445   3577899887766543322211  11222222367778887754     3566777


Q ss_pred             CCCCC
Q 001358          651 TPESN  655 (1092)
Q Consensus       651 ~~~~~  655 (1092)
                      ..+++
T Consensus       469 ~~~~~  473 (480)
T PHA02790        469 NRTYS  473 (480)
T ss_pred             CCCCe
Confidence            66553

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=90.96  E-value=50  Score=41.05  Aligned_cols=174  Identities=15%  Similarity=0.151  Sum_probs=102.5

Q ss_pred             CCCCeeEEEEe---c----CCCEEEEEeCCeEEEEEcCCc---------------eeeEEecC---CCCCeEEEEEcCCC
Q 001358          801 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD  855 (1092)
Q Consensus       801 ~~~~v~~~~~s---~----dg~~l~~~sdg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d  855 (1092)
                      ...+|..|+|+   .    ..++|++-....+.|+...-.               ..+..+..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46678888887   2    235788777778888772211               12223321   12355677888877


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      ...+|+....|...||++..+...     +. ..          +-+.....|.| +.|...-                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~-~~----------~~~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKR-----KS-SN----------LRLSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEecccccc-----CC-cc----------eeeccCCCccc-cCCCccc-----------------
Confidence            778888888888888887221100     00 01          11111222333 2222210                 


Q ss_pred             CCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeee-eeccCCCcCEEEEEEecCC-CEEEEEeCCCcEEEEECCCC
Q 001358          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                       ..-..+.|.++-..|++.....+.++|+.+..... .........|..+.-+++. .+++.- ....|...++...
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence             12447889999899999888999999998776643 2233346788888888872 222222 2356888888773

These proteins are found in fungi.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.89  E-value=1.4  Score=47.50  Aligned_cols=122  Identities=11%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      +++|.++.||+|.+ ++|+--.+++|.+.+....+.......+               ....+..|....|+.. .-+|.
T Consensus        66 ~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~---------------ck~k~~~IlGF~W~~s-~e~A~  128 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQE---------------CKTKNANILGFCWTSS-TEIAF  128 (657)
T ss_pred             CCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHH---------------hccCcceeEEEEEecC-eeEEE
Confidence            45999999999998 8999999999999998554433221111               2224456888999865 77777


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      .+..| +.+|-+...+  +.....+.|...|....|.++.+-.+|+|+-..+++.=+.+.++
T Consensus       129 i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  129 ITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            77777 7788765432  22224557888999999999988533444434444443443433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.83  E-value=18  Score=42.25  Aligned_cols=164  Identities=11%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccce-EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      .+..+.||.+..+|+ ...+|++++|++-... +... .-.......|..+.|..+|=  .+.  ..+|.+.+-+-....
T Consensus        85 ~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avl--t~~g~v~~i~~~~~~  158 (829)
T KOG2280|consen   85 ELIGMGWSDDEELIC-VQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVL--TVSGQVILINGVEEP  158 (829)
T ss_pred             CeeeecccCCceEEE-EeccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEE--ecCCcEEEEcCCCcc
Confidence            888999997776655 4699999999987532 2210 01122333466666666553  233  334444443312211


Q ss_pred             eeEEEec-CCcceEEEeecccCC---ccEEEEEe-cCCeEEEEEcCCCC-ceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          477 RTYSFEG-HGAPVYSLCPHAKEN---IHFIFSIS-VDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       477 ~~~~~~~-~~~~v~~i~~~~~~~---~~~l~s~~-~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      .++++.. ........||....+   ...++-.. ..+ ..++..+... ....+......+..+++||+.++|+.-.. 
T Consensus       159 ~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~-  236 (829)
T KOG2280|consen  159 KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE-  236 (829)
T ss_pred             hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec-
Confidence            2222221 111111112211111   11111111 000 0111111111 12233333457888999999999988765 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEe
Q 001358          551 KEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                         .|.|.+-+....+....+.
T Consensus       237 ---~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  237 ---TGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             ---CCcEEEEecchhhhhhccC
Confidence               4557777766666655555

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.79  E-value=14  Score=46.14  Aligned_cols=154  Identities=18%  Similarity=0.172  Sum_probs=97.1

Q ss_pred             eCCCeEEEEEcCCceeeEeeccccCCeEEEEE--------cCCCCEEEEEeCCCcEEEEEcCCCceeeeee-eecCCCCc
Q 001358          863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCRS-LQTPDGVM  933 (1092)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~  933 (1092)
                      +.|+.+.+|+.+++.....+.+-+..|..+..        -|.=++|...+.--.|.|+-+.-.+...... ....-...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35788999999998888888877777777654        3343555555555667777655433221110 00000000


Q ss_pred             CCCCCceEEEEecCCCEEEEEeCCcEEE--EEcCCc---e-ee----------------eeeccCCCcCEEEEEEecCCC
Q 001358          934 TLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQATFSCDCR  991 (1092)
Q Consensus       934 ~~~~~v~~l~~s~dg~~la~~~d~~v~l--wd~~~~---~-~~----------------~~~~~~h~~~v~~l~fs~dg~  991 (1092)
                      ..+..|.++....+|+.+.+|.||.|+=  |....|   + |.                ..+...+..+|..++....-.
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~  255 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN  255 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence            1113588999899999999999985442  222221   0 10                111124577999999988888


Q ss_pred             EEEEEeCCCcEEEEECCC-CceEEee
Q 001358          992 MVFTSFVDGTLSIHEASN-LEVQCRI 1016 (1092)
Q Consensus       992 ~l~t~s~Dg~i~vwd~~~-~~~~~~~ 1016 (1092)
                      .+.+-+..|+|++|++.. |....++
T Consensus       256 IlY~lsek~~v~~Y~i~~~G~~~~r~  281 (1311)
T KOG1900|consen  256 ILYVLSEKGTVSAYDIGGNGLGGPRF  281 (1311)
T ss_pred             eeeeeccCceEEEEEccCCCccceee
Confidence            899999999999999987 5444443

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.70  E-value=41  Score=43.49  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=87.1

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .|-..++.|.-+|+|.++ =.  .|+.++.||..++.         |...          -......++.++-.-||+..
T Consensus       360 aH~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY  417 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY  417 (1774)
T ss_pred             HHHHHhhccccCCCCCeE-Ee--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence            466677788888888743 22  56778888876542         2210          01123455566666677776


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC------ce--eEEEec
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEG  483 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~------~~--~~~~~~  483 (1092)
                      | =+.+   .+-|+..+....      ..-..+.+...+++|.- .+.++-....+.+|++...      ++  .-.+.+
T Consensus       418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d  486 (1774)
T PF11725_consen  418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD  486 (1774)
T ss_pred             e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence            6 2222   234555543111      12235777888999983 3566666667799998754      11  122333


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~  518 (1092)
                      -.....++.++  ++  .|+.+..+|.+..=++..
T Consensus       487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence            33355566663  33  688889999888776654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.32  E-value=27  Score=37.27  Aligned_cols=167  Identities=11%  Similarity=0.071  Sum_probs=89.1

Q ss_pred             cEEEEECCCCceeEEEecC------CcceEEEeecccCC----ccEEEEEecCCeEEEEEcCCCCceEEecCCC------
Q 001358          466 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------  529 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------  529 (1092)
                      .|.+||+.+++.++++.-.      ...++.+.+...+.    +...++-+..+-|.|+|+.+++.........      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6888999999988777432      34566777655332    2334444555689999998866544332211      


Q ss_pred             -------------CceEEEEEec---CCCEEEEEecCCCCceeEEEEeCCC-----Ce---------EEEEEeeccccCC
Q 001358          530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN  579 (1092)
Q Consensus       530 -------------~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~  579 (1092)
                                   ..+..++.+|   +|+.|+.....+     -.+|.+.+     ..         .++.+ +..  ..
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~  186 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS  186 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence                         1245556554   666666554321     11221111     10         01111 221  13


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEeC-CCCCCCCceEEEcc--CCCEEEEE
Q 001358          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDA-GGGLPENPRICFNK--NGTLLAVI  640 (1092)
Q Consensus       580 ~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~---~~~~~~~~-~~~~~~v~~v~~s~--~~~~l~~~  640 (1092)
                      ....++++++|..+++--..+.|..|+..+.   +....+.. ......+..+.+.+  +|.+.+..
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            5567888999988888889999999998861   12222222 22133456777777  55544443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.30  E-value=2.6  Score=51.00  Aligned_cols=147  Identities=11%  Similarity=0.036  Sum_probs=90.7

Q ss_pred             ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-----EEEec----CCc--ceEEEeecccCCccEEEEEecCCeE
Q 001358          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEG----HGA--PVYSLCPHAKENIHFIFSISVDGKI  511 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-----~~~~~----~~~--~v~~i~~~~~~~~~~l~s~~~dg~i  511 (1092)
                      +|..+..++|++...++..+.+-.|..+|+++-..-     .-+..    ...  ...++.|+|... ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            566777778877545555566567889998743211     11111    112  233455655432 245667788888


Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCC
Q 001358          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAK  590 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~  590 (1092)
                      ++..+........--.-....++++|+|.|+.++.+-.    .+++.-|.. +++....+.+.... ...|.+++|-...
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence            88766543333332233456899999999999999854    556776654 34555555544322 3679999998877


Q ss_pred             CEEEE
Q 001358          591 DQILA  595 (1092)
Q Consensus       591 ~~l~~  595 (1092)
                      .++++
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            77766

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.28  E-value=31  Score=37.66  Aligned_cols=71  Identities=8%  Similarity=-0.060  Sum_probs=35.9

Q ss_pred             CccEEEEEecC-----CeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       498 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      ++.+.+.|+..     ..+..||+.+.+=...-..+. ......+...+++..+.++.++.....+..||+.+.+-.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            44566666642     346777766543222111111 122233344567777776654322234678898876643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.06  E-value=36  Score=38.04  Aligned_cols=198  Identities=16%  Similarity=0.124  Sum_probs=104.5

Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc-ceEE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-PVYS  490 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~  490 (1092)
                      .++..+|.|.-.|.+++..+-..... +....+..-.+..+|+   ++.++.++.+...|..+|+.+........ .+..
T Consensus        72 ~~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          72 YVGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             EEecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            33356677777777776533111011 1112233333334776   77788899999999889999887765551 1111


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      -.+  -.+ ..+..++.+|.+...+..++..........   ..+..-....++. ++.+... . +..+.-.|..+|..
T Consensus       148 ~~v--~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~~~G~~  221 (370)
T COG1520         148 PPV--VGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNAEDGTL  221 (370)
T ss_pred             CcE--EcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEccCCcE
Confidence            111  112 244444467888777777777666543322   1111111122333 3333221 1 33577778888877


Q ss_pred             EEEEeeccccC-CceEEEEEcCC-----CCEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358          568 KRTYQGLQLQH-NSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       568 ~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      .-......... ..+........     +..++.++.++.+...|..+++.+......
T Consensus       222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            66643222000 01100001011     223466777888999999999999888754

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.89  E-value=38  Score=37.96  Aligned_cols=150  Identities=9%  Similarity=0.005  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCce
Q 001358          889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT  968 (1092)
Q Consensus       889 V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~  968 (1092)
                      ...+..++||.+++.+..-..++-||-....   ...+.....     ..+.++.|.++|.+++++..|.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~~-----~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRASA-----RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCCc-----cceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            4456677888777765444333334432210   012222211     2588999999999999887777544 333343


Q ss_pred             -----eeeeeccC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCC
Q 001358          969 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1042 (1092)
Q Consensus       969 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1042 (1092)
                           ........ ....+..+.|.+|+..+++| ..|.+... .+.|+.-.+......++.     .+|  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~-----~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAA-----NLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence                 11211111 12458899999888766655 67766654 455555433321122222     244  566654  


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001358         1043 PTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus      1043 ~~~l~~~~~dg~v~~w 1058 (1092)
                      ++...+.+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            3556666788887655

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.75  E-value=0.89  Score=31.54  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             CCceEEeecCCCc--eEEEEEcCcCcEEEEecCCC
Q 001358          335 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG  367 (1092)
Q Consensus       335 ~~V~~v~~spdg~--~llasg~~d~~i~iwd~~~~  367 (1092)
                      +.|.+++|||+..  -||+.+-.-+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3689999997543  47888888899999999864

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.64  E-value=1.2  Score=30.87  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=26.5

Q ss_pred             CcEEEEEECCC-C--CEEEEEeCCCEEEEEEccCC
Q 001358          397 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG  428 (1092)
Q Consensus       397 ~~V~~l~~spd-g--~~las~~~d~~i~iwd~~~~  428 (1092)
                      +.|.++.|||+ +  .+|+.+-..+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            46889999984 4  58888888899999999863

It contains a characteristic DLL sequence motif.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=89.63  E-value=36  Score=38.12  Aligned_cols=39  Identities=10%  Similarity=0.044  Sum_probs=18.9

Q ss_pred             EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      +.+||.++.+....-..+..  .....+..-+++++++|+.
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~  352 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGE  352 (376)
T ss_pred             hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCC
Confidence            45788877654322222111  1122233345667777765

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=89.46  E-value=43  Score=38.05  Aligned_cols=72  Identities=14%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ...+|.++.+...|.+ -+|+.|| +..||..+++.++..  ......+|.++.-+-.|+   +..|+.+| |.+.+.+.
T Consensus       163 ~d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         163 KDTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             cCccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            3467888999888854 4567888 888888887655421  112335777777777777   67777665 67777555

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.27  E-value=23  Score=34.58  Aligned_cols=175  Identities=15%  Similarity=0.076  Sum_probs=95.6

Q ss_pred             EEEEEeCC--CcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001358          457 SVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       457 ~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  534 (1092)
                      ++.+.+.-  ..|++||+.+|+.+.+-.-....+..=-....+| .+..-.=.+|.-..+|.++.++.-.+...+.. . 
T Consensus        58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-W-  134 (262)
T COG3823          58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-W-  134 (262)
T ss_pred             EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCcc-e-
Confidence            56666543  3699999999998866543211111111100112 22333446777788888887776655444322 2 


Q ss_pred             EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001358          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                       ....|++.|+.+    ++..+++.-|+.+-....+......  ....++-+.|- +|...+-.-.+..|...+.++|+.
T Consensus       135 -gLt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         135 -GLTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             -eeecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence             334566666665    3466788888877655444332220  01223333332 344444444555666777788887


Q ss_pred             EEEEeCCC----------CCCCCceEEEccCCCEEEEE
Q 001358          613 LTTIDAGG----------GLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       613 ~~~~~~~~----------~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      +..+...+          +....+.+++.|++..+...
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence            76665432          12235678998877444433

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=89.10  E-value=46  Score=37.86  Aligned_cols=272  Identities=16%  Similarity=0.097  Sum_probs=134.4

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|..+.+.-.|.  +-.|+.|| +..+|..+|+.+....                  .....+|.++.-+-.| .|.+|+
T Consensus       166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg-~LWVGT  223 (671)
T COG3292         166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG-RLWVGT  223 (671)
T ss_pred             cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC-cEEEEe
Confidence            788999999997  34555555 6677877777664211                  0011345555555444 456677


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCC--cceEEEe
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC  492 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~--~~v~~i~  492 (1092)
                      .+| |.+.+.++.+....  -..-..+.|..+.=..+|.   +-.|+..|..+. ....+...... +-|.  ..|+++.
T Consensus       224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~  296 (671)
T COG3292         224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW  296 (671)
T ss_pred             ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence            777 88888776321110  0111233455444444444   444555543322 22333222222 1121  2233333


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec--CCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      .  +.+| -|-+++.+|.+++-+-+-..........+..+...+.+|  .+..+-....    .+.+.+-+..+|..++.
T Consensus       297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s  369 (671)
T COG3292         297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS  369 (671)
T ss_pred             e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence            2  3333 466666676666543221111111111111111122222  1111111111    22355666677777776


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      .....  ...|+.+++.. +..+-.|+...-+..|+..+ +......... ..+.|..+.=.|+++ |..|+.+|.++.
T Consensus       370 v~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         370 VHQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             eeecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence            54433  35567777776 44566677665566677666 3333333222 234577777788887 778888776543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.76  E-value=16  Score=40.49  Aligned_cols=151  Identities=9%  Similarity=0.102  Sum_probs=92.4

Q ss_pred             EEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC------CccEEEEEecCCeEEEEEcCCC
Q 001358          446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~------~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      .+-...+.+.+++..|+....++--|++.|+.+..+..|...|  +.+.|..      +.+.|+--| +..|.-.|.+..
T Consensus       471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~  547 (776)
T COG5167         471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRAR  547 (776)
T ss_pred             hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEeccccc
Confidence            3334444444567778888889999999999999998887664  3343321      223454444 444444565544


Q ss_pred             CceEEecCCCC-----ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE
Q 001358          520 GARVDYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL  594 (1092)
Q Consensus       520 ~~~~~~~~~~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  594 (1092)
                      ...........     ...+.. ....-++++++..++    |++||.-.-.....+.+..   ..|..+..+.+|.+++
T Consensus       548 gNKi~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~il  619 (776)
T COG5167         548 GNKIKVVESKDYKTKNKFSSGM-TTESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHIL  619 (776)
T ss_pred             CCceeeeeehhccccccccccc-cccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEE
Confidence            43222211111     122222 223457888876443    9999976666656666665   7899999999999998


Q ss_pred             EEeCCCeEEEEECC
Q 001358          595 AAGDDHVIKIWDMN  608 (1092)
Q Consensus       595 ~~s~dg~i~iwd~~  608 (1092)
                      +.+. ..+.+-|+.
T Consensus       620 aTCk-~yllL~d~~  632 (776)
T COG5167         620 ATCK-NYLLLTDVP  632 (776)
T ss_pred             Eeec-ceEEEEecc
Confidence            8775 345555543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.70  E-value=18  Score=32.70  Aligned_cols=124  Identities=13%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             EEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-----CCCEEEE
Q 001358          339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-----DGSLLGV  413 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-----dg~~las  413 (1092)
                      .-.|..... -|++++.-|.|.|.+..........    ++     ...   .+-.-...|++++-.+     +...|+.
T Consensus         3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~----~~-----~~i---~~LNin~~italaaG~l~~~~~~D~Lli   69 (136)
T PF14781_consen    3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR----QD-----SDI---SFLNINQEITALAAGRLKPDDGRDCLLI   69 (136)
T ss_pred             EEEeCCCce-eEEEEecCCEEEEECCCcccccccc----cc-----Cce---eEEECCCceEEEEEEecCCCCCcCEEEE
Confidence            334555554 4777778899999987754322110    00     000   0112345777776443     3456777


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCC--cEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--QISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~--~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      |+.. .+..||++....+.    .+.-.+.|.++.+-.-+.  . -++..+.+..|.-+|.+..+...+.
T Consensus        70 Gt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~-~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   70 GTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPS-PLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             eccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCC-cEEEECceEEEEEeCCCCcEEEEEe
Confidence            7655 59999999876553    334456677777632111  1 2444444778888885555544443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.64  E-value=36  Score=37.21  Aligned_cols=151  Identities=11%  Similarity=0.110  Sum_probs=85.4

Q ss_pred             CCCCeeEEEEec-CCCEEEEEeCCe------EEEEEcCC--c--eee-----EEecCCCC--------CeEEEEEcCCCC
Q 001358          801 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN  856 (1092)
Q Consensus       801 ~~~~v~~~~~s~-dg~~l~~~sdg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~  856 (1092)
                      .-+..+.+.+.+ ++.+++...+|.      +..+++..  +  ..+     ..+....+        ..-++++.+ ++
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence            345678889985 555555554455      54444432  1  111     11222221        344788866 78


Q ss_pred             CEEEEEeCC------CeEEEEEcCCceeeEeec---------------cccCCeEEEEEcCCCCEEEEEeC-----CC--
Q 001358          857 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA--  908 (1092)
Q Consensus       857 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spdg~~l~s~s~-----Dg--  908 (1092)
                      .++++.-.+      ..|+.++.. |+.+..+.               ..+....+|+++|||+.|.++.+     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888876666      788888876 65544331               13456889999999997666543     22  


Q ss_pred             c-------EEEEEcCCCc---eeeeeeeecCC-CCcCCCCCceEEEEecCCCEEEE
Q 001358          909 Q-------IFVWDVDGWG---IQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       909 ~-------i~iwd~~~~~---~~~~~~~~~~~-~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .       ++|+.+....   ........... ........++.+.+-+++++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       5665554321   11112222221 00001136899999999998887

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=88.60  E-value=77  Score=39.84  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCe
Q 001358          733 KANKISRLTYNNGGQAIFALASNGV  757 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~  757 (1092)
                      +-+.+.+++++|||...++-..+-.
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN~r  684 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGNSR  684 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCchh
Confidence            5667889999999997766555433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.25  E-value=44  Score=36.56  Aligned_cols=164  Identities=13%  Similarity=0.117  Sum_probs=90.8

Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--eee-----EeeccccC--------CeEEEEEcCCCC
Q 001358          843 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALN  899 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spdg~  899 (1092)
                      -+.+..+++.++++ .+++.+.+|.      +..+++..  +  ..+     ..+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            35678888987344 4555666776      66665543  1  111     11111111        344788888888


Q ss_pred             EEEEEeCC------CcEEEEEcCCCceeeeeeeecCC-------CCcCCCCCceEEEEecCCCEEEEE------eCC--c
Q 001358          900 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H  958 (1092)
Q Consensus       900 ~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~dg~~la~~------~d~--~  958 (1092)
                      ++++.-.+      ..|..++.. +.......+...-       ..........+++++|||+.|.+.      .|+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88877666      678888876 4432211111110       112233578999999999955442      222  1


Q ss_pred             -------EEE--EEcCC-ceeeeee---ccC-----CCcCEEEEEEecCCCEEEEEe-----CCCcEEEEECC
Q 001358          959 -------LAI--YEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1008 (1092)
Q Consensus       959 -------v~l--wd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t~s-----~Dg~i~vwd~~ 1008 (1092)
                             +++  ||..+ ++....+   ...     ....|+.+.+-+|+++|+--=     ....++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                   444  45444 3222221   111     357889999999999777421     23456666554

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=87.62  E-value=65  Score=37.86  Aligned_cols=80  Identities=10%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             CCEEEEEeCCeEEEEEcCCceeeEEecCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec-c----ccC
Q 001358          814 DAYLFSASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-G----HSK  887 (1092)
Q Consensus       814 g~~l~~~sdg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~----h~~  887 (1092)
                      +..++-.....|++.+...++........ ...|.+.+..   +.+++.+..++.+..+.+.......... .    ...
T Consensus       418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (504)
T PF10433_consen  418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN  494 (504)
T ss_dssp             TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred             CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence            56666666777999998877777665443 3456666664   3467777778999999988766542222 1    457


Q ss_pred             CeEEEEEcC
Q 001358          888 RVTGLVFSD  896 (1092)
Q Consensus       888 ~V~~l~~sp  896 (1092)
                      .|.|+...|
T Consensus       495 eis~l~i~p  503 (504)
T PF10433_consen  495 EISCLSIEP  503 (504)
T ss_dssp             -EEEEE---
T ss_pred             ceEEEEeCC
Confidence            788888765

...

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.62  E-value=6.6  Score=48.78  Aligned_cols=172  Identities=14%  Similarity=0.184  Sum_probs=99.8

Q ss_pred             cccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358          318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .+..+|+..+..+. |...=+.+-+-|.=.+  |--+.|+.+.+|+.+++.....                   +.+-..
T Consensus        63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh  120 (1311)
T KOG1900|consen   63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH  120 (1311)
T ss_pred             ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence            44566776665555 4434444555554332  3335689999999999765542                   233334


Q ss_pred             cEEEEE--------ECCCCCEEEEEeCCCEEEEEEccCCCCccce------EEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358          398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       398 ~V~~l~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~l~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      .|..+.        |-|.=++|.+...--.|.|+-+.-.+.....      .++.-..-.|.|+....+|+  ++. +|.
T Consensus       121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~  197 (1311)
T KOG1900|consen  121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR  197 (1311)
T ss_pred             hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence            444443        4444566666555556777766533221111      11222245789999888888  455 555


Q ss_pred             CCcEEEEEC----CCC---c-e----------------eEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001358          464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1092)
Q Consensus       464 d~~i~vwd~----~~~---~-~----------------~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~  518 (1092)
                      ||  .+|.+    ..|   + +                +-.+. .+..+|..+.+..  ....+.+-+..|+|.+||+..
T Consensus       198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            66  45543    111   1 1                11222 4567888888843  346888899999999999875

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=87.60  E-value=65  Score=37.85  Aligned_cols=105  Identities=17%  Similarity=0.212  Sum_probs=61.6

Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCc--eEEecCC-CCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~-~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      ..++..++.+..+|.+....+.....  ....-+. .....++++-.+| .+++.++..  +++.+..|....-+.+..+
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~--gds~l~~~~~~~l~~~~~~  296 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF--GDSQLLQISLSNLEVLDSL  296 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS--S-EEEEEEESESEEEEEEE
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec--CCcEEEEEeCCCcEEEEec
Confidence            45667889999999998877665442  1222112 3344566665555 467777664  4688888886666777777


Q ss_pred             eeccccCCceEEEEEcCC----CC------EEEEEe---CCCeEEEEE
Q 001358          572 QGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWD  606 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~----~~------~l~~~s---~dg~i~iwd  606 (1092)
                      ...    ++|..+++.+.    ..      .+++++   .+|.+++..
T Consensus       297 ~N~----~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr  340 (504)
T PF10433_consen  297 PNW----GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR  340 (504)
T ss_dssp             --------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE
T ss_pred             cCc----CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe
Confidence            654    48888887532    22      566654   567787764

...

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.54  E-value=62  Score=37.54  Aligned_cols=193  Identities=12%  Similarity=0.154  Sum_probs=91.7

Q ss_pred             EEEEEE---eCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc-
Q 001358          456 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-  531 (1092)
Q Consensus       456 l~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-  531 (1092)
                      +++++.   ...+...+.| ..|.....+.........  |...++|.+++...  +.+..+|+.. +....+...... 
T Consensus       116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~  189 (477)
T PF05935_consen  116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYY  189 (477)
T ss_dssp             EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred             EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCccc
Confidence            355555   3445566667 556655555332222111  23355776666554  7777777753 333333333321 


Q ss_pred             --eEEEEEecCCCEEEEEec---------CCCCceeEEEEeCCCCeEEEEEeeccc----------------------c-
Q 001358          532 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL----------------------Q-  577 (1092)
Q Consensus       532 --i~~~~~s~dg~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~----------------------~-  577 (1092)
                        -..+...|+|++|+.+..         .......|..+| .+|+.+..+.....                      . 
T Consensus       190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~  268 (477)
T PF05935_consen  190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR  268 (477)
T ss_dssp             -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred             ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence              234677799999887762         111123466777 77877665432210                      0 


Q ss_pred             -CCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCC-ceEEEcc------------------CCCE
Q 001358          578 -HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL  636 (1092)
Q Consensus       578 -~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~  636 (1092)
                       --.++++.+.+....|+..+. -..|...|..+++....+..++....- ....+.|                  -|++
T Consensus       269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH  348 (477)
T PF05935_consen  269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH  348 (477)
T ss_dssp             BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred             CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence             023788999895555655555 448899999999998888765432211 1111111                  2566


Q ss_pred             EEEEeCCC---eEEEEECCCCC
Q 001358          637 LAVIANEN---RIKILETPESN  655 (1092)
Q Consensus       637 l~~~~~dg---~i~iw~~~~~~  655 (1092)
                      -+.-..+|   .|.+||-...+
T Consensus       349 ~~~~~~~g~~~~l~vFDNg~~r  370 (477)
T PF05935_consen  349 TAHLIPDGPQGNLLVFDNGNGR  370 (477)
T ss_dssp             EEEE-TTS---SEEEEE--TTG
T ss_pred             ceEEcCCCCeEEEEEEECCCCC
Confidence            66666777   88888876553

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.49  E-value=1.9  Score=29.53  Aligned_cols=31  Identities=10%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCc--CcEEEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW  362 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d--~~i~iw  362 (1092)
                      .....-...+|||||++++.++..+  |.-.||
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3445778899999999877777776  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=87.15  E-value=49  Score=42.90  Aligned_cols=134  Identities=13%  Similarity=0.055  Sum_probs=80.3

Q ss_pred             EeCCCeEEEEEcCCce-------eeEee---------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001358          862 GMDDSTILIYNARSSE-------VISKL---------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS  925 (1092)
Q Consensus       862 g~~dg~v~iwd~~~~~-------~~~~l---------~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~  925 (1092)
                      |-.||.|.-||-.+..       -+..|         .-..+.|..+.+++...-++-+. +..+.+=-.. .+......
T Consensus       619 ~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~~r-~~~e~G~~  696 (1774)
T PF11725_consen  619 GLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQRR-NKVELGDA  696 (1774)
T ss_pred             eeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccccc-CCCCCCcc
Confidence            4568999999976521       11111         11346677777777655554332 2222210000 11111223


Q ss_pred             eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001358          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~v 1004 (1092)
                      +...+     ...|+++|+-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++-
T Consensus       697 l~Gl~-----~~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~  768 (1774)
T PF11725_consen  697 LEGLE-----DRVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR  768 (1774)
T ss_pred             ccCCC-----cCcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence            33333     1368999999999999998889999888 667665554555689999999988765444 556776553

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.08  E-value=16  Score=40.44  Aligned_cols=142  Identities=15%  Similarity=0.221  Sum_probs=87.7

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC-------CCCEEEEEeCCCeEEEEEcCC-ceeeEe
Q 001358          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK  881 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~~-~~~~~~  881 (1092)
                      .|..++..-+  ...++-.|++.|+.+.....|...  -+.|.|.       +.+.|+ |-.+..|.-.|.+- |..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence            3444444443  266888899999999888877655  4566662       233444 55555555555442 322222


Q ss_pred             eccccCCeEEEEEc----CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001358          882 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1092)
Q Consensus       882 l~~h~~~V~~l~~s----pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~  957 (1092)
                      -+ ...-++.-.||    ....++|.+|.-|.|++||--.....+  .+   +   ..+..|..+..+.+|+++++....
T Consensus       554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--al---P---~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--AL---P---GLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cC---c---ccccceeeeEeecCCcEEEEeecc
Confidence            11 12222323333    245689999999999999965522111  11   1   122468899999999999998888


Q ss_pred             cEEEEEcC
Q 001358          958 HLAIYEAE  965 (1092)
Q Consensus       958 ~v~lwd~~  965 (1092)
                      .+.+.|+.
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            88888875

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.03  E-value=9.3  Score=48.20  Aligned_cols=69  Identities=10%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             CceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001358          938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       938 ~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
                      .+.+..+......+.....+.+.+|+.........+...+...      +.++..++++-.||.+.+||...|..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLE------SRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccC------ccCCceEEEEEecCCEEeeecCCCce
Confidence            3445555555555555556666666655444444433222212      88999999999999999999999866

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.90  E-value=55  Score=36.21  Aligned_cols=54  Identities=4%  Similarity=-0.187  Sum_probs=26.7

Q ss_pred             CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC------cEEEEECCCC
Q 001358          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG------TLSIHEASNL 1010 (1092)
Q Consensus       957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg------~i~vwd~~~~ 1010 (1092)
                      +.+..||..+.+-...-.......-...+...++++.+.|+.+.      .+.++++...
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~  227 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG  227 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCC
Confidence            45888998766533221111111111222345778888887542      2445565443

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.43  E-value=37  Score=39.35  Aligned_cols=149  Identities=13%  Similarity=0.093  Sum_probs=73.0

Q ss_pred             CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                      ..+...++|.. |..+..+.........+.+.++|.+++..+  ..++.+|+.... .....+  ..+...   .=..+.
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v-~~~~~l--~~~~~~---~HHD~~  196 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV-IWEYDL--PGGYYD---FHHDID  196 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E-EEEEE----TTEE----B-S-EE
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE-EEeeec--CCcccc---cccccE
Confidence            34455666644 455444432221111166678998887665  678888887532 221122  211100   012577


Q ss_pred             EecCCCEEEEEe--------------CCcEEEEEcCCceeeeeeccC-C-------------------------CcCEEE
Q 001358          944 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ  983 (1092)
Q Consensus       944 ~s~dg~~la~~~--------------d~~v~lwd~~~~~~~~~~~~~-h-------------------------~~~v~~  983 (1092)
                      .-|+|++|+.+.              +..|..+| .+|+.+..|... |                         ---+.+
T Consensus       197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns  275 (477)
T PF05935_consen  197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS  275 (477)
T ss_dssp             E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred             ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence            889999988754              23466666 677666554211 1                         134788


Q ss_pred             EEEec-CCCEEEEEeCCCcEEEEECCCCceEEeecccccc
Q 001358          984 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus       984 l~fs~-dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
                      +.+.+ |+.+|+++=.-..|...|..++++...+......
T Consensus       276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w  315 (477)
T PF05935_consen  276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGW  315 (477)
T ss_dssp             EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT-
T ss_pred             cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCC
Confidence            89988 5555555544458888898899998888754433

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.39  E-value=3.4  Score=40.25  Aligned_cols=32  Identities=38%  Similarity=0.591  Sum_probs=26.3

Q ss_pred             CcEEEEEECCCC------CEEEEEeCCCEEEEEEccCC
Q 001358          397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHGG  428 (1092)
Q Consensus       397 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~~  428 (1092)
                      ..|.+++|||-|      -+||+.+.++.|.||.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            389999999954      47888899999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.34  E-value=0.14  Score=55.29  Aligned_cols=243  Identities=16%  Similarity=0.105  Sum_probs=136.9

Q ss_pred             EEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE
Q 001358          739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  818 (1092)
Q Consensus       739 ~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~  818 (1092)
                      ...+.+.+.-++.++.+..+..||-....                       ....     ........+++..++..++
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence            34566666668888877777776632211                       1111     1233445677777787776


Q ss_pred             EEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001358          819 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD  896 (1092)
Q Consensus       819 ~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp  896 (1092)
                      ...  .+.+.+||+.+....+--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            665  58899999975432211111111222278999 889999999999999999988776666666999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCC--CCceEEEEecCCCEEEEEeCCcEEEE--Ec--CCceee
Q 001358          897 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA--PSETHIQFHKDQTRFLLVHETHLAIY--EA--EELTCL  970 (1092)
Q Consensus       897 dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~dg~~la~~~d~~v~lw--d~--~~~~~~  970 (1092)
                      .+ +.+.++.|..+.+-...+.....    ....+...-.  -....=.|..-|..+.....+.+.+.  .+  ..+ +.
T Consensus       170 Ed-~vil~dcd~~L~v~~qegeta~l----tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~-pv  243 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVTTQEGETASL----TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE-PV  243 (615)
T ss_pred             cc-eeeecCcHHHHHHhhhccceeee----eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC-cc
Confidence            85 55667777665544433311111    0001110000  00111123334444444222221111  11  111 11


Q ss_pred             eeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 001358          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      ...+....+.+.++.|--||.. .-+-.-|.|..-.+.++++...|.
T Consensus       244 al~fq~~~gni~cyrwylDg~i-~igf~ag~iV~iS~h~aeLgaeff  289 (615)
T KOG2247|consen  244 ALQFQEKYGNIHCYRWYLDGYI-LIGFDAGYIVSISAHNAELGAEFF  289 (615)
T ss_pred             ceEeeecCCceeEEEEeccccc-cccccceeEEEEeccchHHHHHHH
Confidence            1112233567888888888854 446666777777788887765554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.25  E-value=4.9  Score=40.71  Aligned_cols=72  Identities=10%  Similarity=-0.028  Sum_probs=55.2

Q ss_pred             EEEecCCCEEEE-EeCCcEEEEEcCCceeeeee------cc-------CCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          942 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       942 l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                      +.+..++.+|++ ..+|.+++||+.+++.+...      +.       .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            446667777776 89999999999998766442      22       2467889999999998888765 588999998


Q ss_pred             CCCceEE
Q 001358         1008 SNLEVQC 1014 (1092)
Q Consensus      1008 ~~~~~~~ 1014 (1092)
                      +-+....
T Consensus        95 ~L~~W~~  101 (219)
T PF07569_consen   95 DLGCWIR  101 (219)
T ss_pred             ccceeEE
Confidence            8776654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.16  E-value=2.8  Score=42.44  Aligned_cols=74  Identities=9%  Similarity=0.122  Sum_probs=51.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEcCCCceeeee-eee-cCCCC----cCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCc
Q 001358          894 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-SLQ-TPDGV----MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1092)
Q Consensus       894 ~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~-~~~~~----~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~  967 (1092)
                      +..++++|+..+.+|.+++||+.+.+..... .+. .....    ......|..+.++.+|.-|++-++|..+.|+..=+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4457889999999999999999987644322 111 11100    02224689999999999888877788899987633

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.97  E-value=15  Score=37.56  Aligned_cols=148  Identities=11%  Similarity=0.043  Sum_probs=83.0

Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC---CeEEEEEeeccccCCceEEEEEcC
Q 001358          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      .+||+.+.+..........-+.+-++-+||+.+.+++. .++...+++++..+   ..........-.....-.+...-|
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            46888776554433233334445567899999988875 44667788888765   111111111001113344456678


Q ss_pred             CCCEEEEEeCCC-eEEEEECCC-CceEEEE---e---CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeec
Q 001358          589 AKDQILAAGDDH-VIKIWDMNK-VQLLTTI---D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       589 ~~~~l~~~s~dg-~i~iwd~~~-~~~~~~~---~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      ||+.++.|+... +..+|.... ......+   .   .......-..+...|+|++++.+..+  -.|||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence            999999987654 445555422 1111111   1   01111223467788999999888765  456688877665555


Q ss_pred             cc
Q 001358          661 GV  662 (1092)
Q Consensus       661 ~~  662 (1092)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            43

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PRK13614 lipoprotein LpqB; Provisional

Probab=85.51  E-value=47  Score=38.99  Aligned_cols=158  Identities=14%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCC-Cce
Q 001358          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDG-WGI  920 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~i~iwd~~~-~~~  920 (1092)
                      .+.+++.++ ++..+|....++. .+|-...+... ..+.+  ..++.-.|.++| ++-++..+.  .|....-.. ++.
T Consensus       344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~  418 (573)
T PRK13614        344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG  418 (573)
T ss_pred             cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence            678899999 8888888777762 33432223322 23333  346777888887 666655443  444443221 111


Q ss_pred             eeee--eeecCCCCcCCCCCceEEEEecCCCEEEE--EeCCc--EEEEEc---CCceeeee--ec-cCCCcCEEEEEEec
Q 001358          921 QTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEA---EELTCLKQ--WF-PISSVPISQATFSC  988 (1092)
Q Consensus       921 ~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~--~~d~~--v~lwd~---~~~~~~~~--~~-~~h~~~v~~l~fs~  988 (1092)
                      ....  .+.. .  ......|..+..|+||..+|.  ..++.  |+|--+   ..|.....  .. .++...+.++.|..
T Consensus       419 ~~~~~~~v~~-~--~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~  495 (573)
T PRK13614        419 AQAPTVTLTA-D--WLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVG  495 (573)
T ss_pred             ccccceeecc-c--ccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcC
Confidence            0000  1111 1  111124999999999999887  34665  666544   24432211  11 12246889999999


Q ss_pred             CCCEEEEEeC-C--CcEEEEECCCC
Q 001358          989 DCRMVFTSFV-D--GTLSIHEASNL 1010 (1092)
Q Consensus       989 dg~~l~t~s~-D--g~i~vwd~~~~ 1010 (1092)
                      ++.+++.+.. +  ..+++..+..|
T Consensus       496 ~~sl~V~~~~~~~~~~~~~v~v~~g  520 (573)
T PRK13614        496 DSTVVVTKASATSNVVPELLSVDAG  520 (573)
T ss_pred             CCEEEEEeccCCCcceEEEEEeCCC
Confidence            9987776542 2  34566666544

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=85.36  E-value=49  Score=34.26  Aligned_cols=73  Identities=12%  Similarity=0.071  Sum_probs=46.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      +.+..+.++  +++++.+..+.-++|.|+.+......+..-....  ..-.+.-.|++..++.-|.-+.+.|+.+..
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g--yaygv~vsGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG--YAYGVYVSGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCc--eEEEEEecCCEEEEeeccCcEEEEECCCCC
Confidence            455666665  4678888888889999998765443332211101  223344458888888866677788887653

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.20  E-value=63  Score=35.31  Aligned_cols=111  Identities=8%  Similarity=-0.029  Sum_probs=55.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe------CCcEEEEEc
Q 001358          897 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA  964 (1092)
Q Consensus       897 dg~~l~s~s~Dg-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~------d~~v~lwd~  964 (1092)
                      ++++++.|+.++     .+..+|+.+.+.. ....+......     .-...+..-++++.+.+.      ...+..||.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~  146 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL  146 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence            566777777653     4666777664421 11111111111     011122233566656542      135888898


Q ss_pred             CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCc----EEEEECCCCce
Q 001358          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEV 1012 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~----i~vwd~~~~~~ 1012 (1092)
                      .+.+-...-......+....+...++++.+.|+.++.    +..||..+.+.
T Consensus       147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            7665332210111122233334567888888887643    56788887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.03  E-value=3.3  Score=44.71  Aligned_cols=159  Identities=9%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee-EEec-CCCC----CeE-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001358          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N  872 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d  872 (1092)
                      ....+..+-..|||+.+..-+..++.++++.+.... +.+. ...+    .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            345677888999999999988889999988754322 1221 1112    122 222233 67778889999988776 4


Q ss_pred             cCCc-e----eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358          873 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       873 ~~~~-~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      ...+ .    .+..++-...++..+.--.+.+-+++-+..|++.++.....+..   ..+..-      ..+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence            4332 1    12222222233443333334466777888888887765442211   111111      13667999999


Q ss_pred             CCEEEEEeCCcEEEEEcCCcee
Q 001358          948 QTRFLLVHETHLAIYEAEELTC  969 (1092)
Q Consensus       948 g~~la~~~d~~v~lwd~~~~~~  969 (1092)
                      +.+|++-..+.++++.+++...
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeecCCceEEEEecCCCC
Confidence            9999998889999998876543

>PRK13613 lipoprotein LpqB; Provisional

Probab=84.74  E-value=93  Score=37.02  Aligned_cols=188  Identities=10%  Similarity=0.017  Sum_probs=101.5

Q ss_pred             CeeEEEEecCCCEEEEEeC-C-eEEEEEcCCcee----e-EEecCCCCCeEEEEEcCCCCCEEEEEeC--CC--eEEEEE
Q 001358          804 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----I-LTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYN  872 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sd-g-~i~iwd~~~~~~----~-~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd  872 (1092)
                      .+.+++.|+++..+|...+ + .+.+..+..+..    . ..+.  ....+.-.|.+ ++ .+-+...  ++  .+++..
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~--~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~  439 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA--DGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQ  439 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec--cCcccCCcCcC-CC-CEEEecCCCCCceEEEEEc
Confidence            5778999999999887763 3 466655533322    1 1121  23466667777 45 3434322  22  255554


Q ss_pred             cCCceee--EeeccccC-CeEEEEEcCCCCEEEEEeC---CCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEE
Q 001358          873 ARSSEVI--SKLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       873 ~~~~~~~--~~l~~h~~-~V~~l~~spdg~~l~s~s~---Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                      - +|+..  .. ....+ .|+.+..|+||-++|....   .+.|.|=-+..   +.......+....+.    ..+.+++
T Consensus       440 ~-~G~~~~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~  513 (599)
T PRK13613        440 G-DGEPVEVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMS  513 (599)
T ss_pred             C-CCcEEEeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeE
Confidence            3 44432  11 12233 7999999999988776554   35565554433   221111112221221    2488999


Q ss_pred             EecCCCEEEEE--eC--CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEeCCCcE
Q 001358          944 FHKDQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1002 (1092)
Q Consensus       944 ~s~dg~~la~~--~d--~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s~Dg~i 1002 (1092)
                      |..++.+++.+  .+  ..+.+.++........ ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus       514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v  576 (599)
T PRK13613        514 WAGDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI  576 (599)
T ss_pred             EcCCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence            99999988854  23  3344445443322211 112344566677776666 45543555554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.23  E-value=71  Score=35.18  Aligned_cols=188  Identities=13%  Similarity=0.143  Sum_probs=101.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec--ccCCccE--EEEEe-cC---CeEEEEEcCCCCceE-EecC
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA  527 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~--l~s~~-~d---g~i~vwd~~~~~~~~-~~~~  527 (1092)
                      +++....++-+.+||+ .|+.++.+.  .+.++.+.+.  ..-+++.  |+.++ .+   .+|++|.++...... .+..
T Consensus        70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~  146 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD  146 (381)
T ss_dssp             EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred             eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence            6777778888999995 556666664  2344444321  1112222  33333 32   469999886533222 2221


Q ss_pred             -------CCCceEEEEEe--c-CCCEEEEEecCCCCceeEEEEeC---CCC----eEEEEEeeccccCCceEEEEEcCCC
Q 001358          528 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       528 -------~~~~i~~~~~s--~-dg~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1092)
                             ....++.+|+-  + +|.+.+.... +  ++.+..|.+   ..+    +.++.|...    ..+..|......
T Consensus       147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~  219 (381)
T PF02333_consen  147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET  219 (381)
T ss_dssp             TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred             CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence                   11246677763  3 4554444332 1  334555443   344    456777653    478899999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC-----ceEEEEeCCCCCCCCceEEEc--cCC-CEEEEEe-CCCeEEEEECCCC
Q 001358          591 DQILAAGDDHVIKIWDMNKV-----QLLTTIDAGGGLPENPRICFN--KNG-TLLAVIA-NENRIKILETPES  654 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--~~~-~~l~~~~-~dg~i~iw~~~~~  654 (1092)
                      .+|+.+-++.-|.-|+.+..     ..+.......-...+-.++.-  .++ .||++.+ .+++..+|+....
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            99999999988888887622     222222222223446666664  343 3444444 4788999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.99  E-value=26  Score=39.78  Aligned_cols=114  Identities=11%  Similarity=0.065  Sum_probs=60.9

Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC------CEEEEE--e-
Q 001358          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-  955 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg------~~la~~--~-  955 (1092)
                      .-...+.|+|.|||++|++--..|.|++++-.++.......+...... .-......|+|+|+-      .+|.++  . 
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~-~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVND-AQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceecc-CCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            345678999999998888765569999998665432211111100000 012357899999884      344442  1 


Q ss_pred             --------CCcEEEEEcCCc--ee--eeeeccC----CCcCEEEEEEecCCCEEEEEeCC
Q 001358          956 --------ETHLAIYEAEEL--TC--LKQWFPI----SSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       956 --------d~~v~lwd~~~~--~~--~~~~~~~----h~~~v~~l~fs~dg~~l~t~s~D  999 (1092)
                              ...|.-|.+...  ..  ...++.+    ....-..|+|.|||.++++.+..
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                    123444544311  00  1111111    01224467899999877766544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.45  E-value=72  Score=37.75  Aligned_cols=57  Identities=14%  Similarity=0.230  Sum_probs=35.4

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                      .+...+|.-....++.+..+.+.+|-.....-.....-....+.-+.|+|.....|.
T Consensus       297 k~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~  353 (1243)
T COG5290         297 KAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL  353 (1243)
T ss_pred             hhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence            344556666666666667788999998765433333333456677889984443443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.92  E-value=7.3  Score=37.90  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             CCeEEEEEcCCC------CEEEEEeCCCcEEEEEcCC
Q 001358          887 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       887 ~~V~~l~~spdg------~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      ..|.+++|||-|      -+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999954      5789999999999998775

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=82.78  E-value=38  Score=37.01  Aligned_cols=162  Identities=13%  Similarity=0.131  Sum_probs=88.8

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEe
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALS  811 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~-~~~~s  811 (1092)
                      ....+..+-..|||+.+..-+. ..+.++++........         ++.+-..|.           ....|+ .+..-
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r---------kl~~dspg~-----------~~~~Vte~l~lL  277 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR---------KLVDDSPGD-----------SRHQVTEQLYLL  277 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh---------hhhhcCCCc-----------hHHHHHHHHHHH
Confidence            4456778889999998887776 5788888766543111         000100110           001111 11112


Q ss_pred             cCCCEEEEEe-CCeEEEE-EcCCc-----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc
Q 001358          812 KNDAYLFSAS-GGVISLY-IVMTF-----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1092)
Q Consensus       812 ~dg~~l~~~s-dg~i~iw-d~~~~-----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1092)
                      ..|..+.+++ ||.|.-| |...+     ..++.++-...++..+.--. ..+-+++-+..|++.++.....+.+-.-. 
T Consensus       278 ~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~-  355 (733)
T COG4590         278 SGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFER-  355 (733)
T ss_pred             hCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhh-
Confidence            2343444443 6666555 44322     12233332333444444333 45667777888888888765544332222 


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                      --..+.-+++||.+.+|++-. .|.|+++.+++.
T Consensus       356 ~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         356 AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             hhcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence            223566789999999999754 456999988764

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=82.49  E-value=76  Score=34.20  Aligned_cols=210  Identities=13%  Similarity=0.012  Sum_probs=103.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-CCEEEEEEccCCCC-----------ccc-eEEecccccceeEEEeeCCCCcEEEEEE
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITC  461 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~-----------~~~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~  461 (1092)
                      +...|+++...+.-+.|++-+. ...++.+++..-..           .+. ....-+|......++.. .++...++.+
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~  119 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCV  119 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEE
Confidence            5668999999998877776643 44599999843221           000 00112344444444444 3333345555


Q ss_pred             eCCCcEEEEECCCC----ceeEEE---e-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC--CCce-----EEec
Q 001358          462 GDDKTIKVWDAVTG----SRTYSF---E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LGAR-----VDYD  526 (1092)
Q Consensus       462 ~~d~~i~vwd~~~~----~~~~~~---~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~-----~~~~  526 (1092)
                      ....+|.++.+...    ...+.+   . .-..++..+..+.+.....+..|+..+-..++++..  ....     ....
T Consensus       120 A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~  199 (302)
T smart00036      120 ALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE  199 (302)
T ss_pred             EcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc
Confidence            55667777654322    111211   0 112233333333333345666676643334444432  1100     0011


Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i  604 (1092)
                      .......++..-+++.+|++-      +......|.......+  .+. ..   ....++++..  .++++-+. ..|.|
T Consensus       200 ~~~~~p~~i~~l~~~e~Llc~------~~~~v~Vn~~G~~~~r~~~l~-w~---~~p~~~~~~~--pyll~~~~-~~iev  266 (302)
T smart00036      200 ETSLKPISVVQVPRDEFLLCY------DEFGVFVNLYGKRRSRNPILH-WE---FMPESFAYHS--PYLLAFHD-NGIEI  266 (302)
T ss_pred             ccccCceEEEEECCCeEEEEE------CcEEEEEeCCCCccccceEEE-cC---CcccEEEEEC--CEEEEEcC-CcEEE
Confidence            111023334444556666554      2234444544212211  121 11   3455666653  67777665 45999


Q ss_pred             EECCCCceEEEEeC
Q 001358          605 WDMNKVQLLTTIDA  618 (1092)
Q Consensus       605 wd~~~~~~~~~~~~  618 (1092)
                      +++.++..++++..
T Consensus       267 r~l~~~~l~q~i~~  280 (302)
T smart00036      267 RSIKTGELLQELAD  280 (302)
T ss_pred             EECCCCceEEEEec
Confidence            99999999888864

Unpublished observations.

>PRK13615 lipoprotein LpqB; Provisional

Probab=81.93  E-value=1.1e+02  Score=35.82  Aligned_cols=152  Identities=9%  Similarity=0.014  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-Cceeeee
Q 001358          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR  924 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~-~~~~~~~  924 (1092)
                      ..+++.++ ++..+|....++.+.++... +.....+.  ...++.-.|.++| ++-++..+...++..... ++..   
T Consensus       336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~---  407 (557)
T PRK13615        336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH---  407 (557)
T ss_pred             cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE---
Confidence            37889999 88888888778888887665 22222232  2346677888887 666655544455555433 2221   


Q ss_pred             eeecCCCCcCCCCCceEEEEecCCCEEEEEe----CCcEEEEEcCC--c--eee----eeeccCCCcCEEEEEEecCCCE
Q 001358          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEE--L--TCL----KQWFPISSVPISQATFSCDCRM  992 (1092)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----d~~v~lwd~~~--~--~~~----~~~~~~h~~~v~~l~fs~dg~~  992 (1092)
                      .+.....   ..+.|..+..|+||..+|.-.    .++|.|--+..  +  ..+    .....+ ...+.++.|..++.+
T Consensus       408 ~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l  483 (557)
T PRK13615        408 PVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV  483 (557)
T ss_pred             Eeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence            1111111   224799999999999998832    25676644432  2  122    111112 348899999999987


Q ss_pred             EEEEe---CCCcEEEEECCC
Q 001358          993 VFTSF---VDGTLSIHEASN 1009 (1092)
Q Consensus       993 l~t~s---~Dg~i~vwd~~~ 1009 (1092)
                      ++.+.   .+..+++-.+..
T Consensus       484 aVl~~~~~~~~~v~~v~v~g  503 (557)
T PRK13615        484 ATLTLAPDGERQVELHQVGG  503 (557)
T ss_pred             EEEeccCCCCceEEEEECCC
Confidence            66652   234566666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1092
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-12
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		5e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		1e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		8e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-05
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 131/554 (23%), Positives = 231/554 (41%), Gaps = 95/554 (17%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 456
           SV  V +SPDG  +  A     V+L+  +G     Q L+ +  H  +V  +AFS P  Q 
Sbjct: 59  SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQ- 111
Query: 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 514
           ++ +  DDKT+K+W+   G    +  GH + V+ +   P  +     I S S D  +K W
Sbjct: 112 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLW 166
Query: 515 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
             +   L     + +   G   +A+S +G+ + S    K     +  WN   G + +T  
Sbjct: 167 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPEN 625
           G     +SV  V F      I +A DD  +K+W+ N  QLL T+             P+ 
Sbjct: 219 G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 626 PRIC----------FNKNGTLLAVIANENR--IKILETPESNSVDAAGVLSDN----LRK 669
             I           +N+NG LL  +   +     +  +P+  ++ +A   SD+    L  
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 331
Query: 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729
            +   + T+TG   +   V+ + D +      I+  +++K+     L+ R  +   LL  
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTV---KLWNRNGQ---LLQT 380
Query: 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789
               ++ +  + ++  GQ I + + +    +W                        R+G 
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------------------RNG- 416
Query: 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 849
           Q +   T  S+S   V   A S +D  + SAS            + + T+   S +   +
Sbjct: 417 QLLQTLTGHSSS---VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909
           AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS     + S+  D  
Sbjct: 474 AFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 910 IFVWDVDGWGIQTC 923
           + +W+ +G  +QT 
Sbjct: 532 VKLWNRNGQLLQTL 545

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895
           + T+   S +   +AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS
Sbjct: 50  LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 896 DALNILVSSGGDAQIFVWDVDGWGIQTC 923
                + S+  D  + +W+ +G  +QT 
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTL 135

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 20   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 74
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 75   YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 134  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 184
Query: 951  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 185  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 1008 S 1008
            S
Sbjct: 244  S 244

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 215
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 22   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 76
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 77   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 136  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 186
Query: 951  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 187  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 1008 S 1008
            S
Sbjct: 246  S 246

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 780  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 838
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 12   PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 839  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 898
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 67   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 899  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 126  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 175
Query: 959  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 176  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 780  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 838
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 2    PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 56
Query: 839  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 898
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 57   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 899  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 116  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 165
Query: 959  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 192
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
             +T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 1    GSTQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 55
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 56   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 115  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 164
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 165  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 190
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 9    KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 64   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 123  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 172
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 173  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 634 -GTLLAVIANENRIKI--LETPE 653
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 950  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 1007 AS 1008
             S
Sbjct: 224  YS 225

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 208
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 19   TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 74   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 132
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 133  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 182
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 183  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 196
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 5    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 59
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 60   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 119  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 168
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 169  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L ++S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 634 -GTLLAVIANENRIKI--LETPE 653
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 830
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 950  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D  L + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 1007 AS 1008
             S
Sbjct: 224  YS 225

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 807 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 859
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALIXEASGG--GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVI 97
Query: 860 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 910
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGXDNVI 156
Query: 911 FVWDV 915
            VWDV
Sbjct: 157 LVWDV 161

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 807 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 859
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVI 97
Query: 860 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 910
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVI 156
Query: 911 FVWDV 915
            VWDV
Sbjct: 157 LVWDV 161

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 391  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 450
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 617  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 673
Query: 451  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 509
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 674  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 730
Query: 510  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 542
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 731  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 543  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 578
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 791  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 847
Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 848  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 639  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 691
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 906  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 692  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 745
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 965  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1021
Query: 746  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1054
Query: 806  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1113
Query: 866  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 923
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 924  RSLQTPDGVMTLAPSETHIQFHKD 947
              +   +G  T     T + F  D
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPD 1196

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 391  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 450
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 610  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 666
Query: 451  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 509
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 667  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 723
Query: 510  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 542
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 724  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 543  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 578
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 784  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 840
Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 841  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 639  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 691
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 899  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 692  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 745
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 958  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1014
Query: 746  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1047
Query: 806  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1106
Query: 866  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 923
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 924  RSLQTPDGVMTLAPSETHIQFHKD 947
              +   +G  T     T + F  D
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPD 1189

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 520
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 521 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 218
Query: 579 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 219 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 270
Query: 637 LAVIANENRIKILE 650
           L   A    IKI +
Sbjct: 271 LCA-ATGPSIKIWD 283

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 520
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 84  DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 521 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 195
Query: 579 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 196 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 247
Query: 637 LAVIANENRIKILE 650
           L   A    IKI +
Sbjct: 248 LCA-ATGPSIKIWD 260

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 124/315 (39%), Gaps = 49/315 (15%)
Query: 322 FPKTVAQTLIEGSSSPMS-MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
            P+   +  + G  SP++ + FHPV  ++++  +      +WD  +G   F R  K    
Sbjct: 95  IPRPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD--FERTLK---- 147
Query: 381 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
                            SV  + +   G LL    +   ++L+ + G    R    +  H
Sbjct: 148 -------------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGH 191
Query: 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
             NV+ ++       I  ++   DKTIK+W+  TG    +F GH   V  + P+  ++  
Sbjct: 192 DHNVSSVSIMPNGDHI--VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGT 247
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMA----YSANGRRLFSCGTSKEGE 554
            I S S D  ++ W+  +   + +       + C   A    YS+      S  T K G+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-ETKKSGK 306
Query: 555 --SFLVE---------WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603
              FL+          W+ S G    T  G     N V  V F +    IL+  DD  ++
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 604 IWDMNKVQLLTTIDA 618
           +WD    + + T++A
Sbjct: 364 VWDYKNKRCMKTLNA 378

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 58/312 (18%)
Query: 354 TNVGDTG-LWDVNSGQKLFI-----RNFKVW--DIGAC--SMLFKTALVRDPGVSVNRVV 403
           T VG TG +W       + I     R  KVW  + G C  ++   T+ VR   +   RVV
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
                + L V   +    L+   G            HV  V  + +        V++   
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMG------------HVAAVRCVQYDGR----RVVSGAY 257
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523
           D  +KVWD  T +  ++ +GH   VYSL     + IH + S S+D  I+ W         
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVV-SGSLDTSIRVW--------- 304
Query: 524 DYDAPGLGCTRMAYSANGRRLFSCG--------TSKEGESFLVEWNESEGAIKRTYQGLQ 575
             D     C    ++  G +  + G         S   +S +  W+   G   +T QG  
Sbjct: 305 --DVETGNCI---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICFNK 632
              ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI    
Sbjct: 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI-RAS 416
Query: 633 NGTLLAVIANEN 644
           N  L+  + + N
Sbjct: 417 NTKLVCAVGSRN 428

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVISKLE 883
           +  ++ +  P           H N V ++  D         D++I +++  +   I  L 
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943
           GH    +G+   D  NILVS   D+ + +WD     I+T + LQT  G      + T +Q
Sbjct: 317 GHQSLTSGMELKD--NILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 944 FHKD 947
           F+K+
Sbjct: 370 FNKN 373

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 495 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 540
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 541 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 598 DDHVIKIWDMNKVQLLTTIDAGGGL 622
            D  I+IWD+   +L+ T+     L
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 23/205 (11%)
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 495 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 540
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 541 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 598 DDHVIKIWDMNKVQLLTTIDAGGGL 622
            D  I+IWD+   +L  T+     L
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
           S+ F+P D   +A G +D  I I++  + +++  L+GH + +  L +  + + LVS  GD
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 938
             + +WD+     Q   +L   DGV T+A S
Sbjct: 187 RTVRIWDLRTG--QCSLTLSIEDGVTTVAVS 215

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
           V  VV S DG           ++L+    G   R+ +    H  +V  +AFS   +QI  
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI-- 487
Query: 459 ITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAW- 514
           ++   D+TIK+W+ +   + T S  G G   +  C     N     I S S D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 515 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
                L  +L     Y       + +A S +G    S G  K+G   L  W+ +EG  K+
Sbjct: 548 LSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGG--KDGVVLL--WDLAEG--KK 595
Query: 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
            Y    L+ NSV      +     L A  +H IKIWD+
Sbjct: 596 LYS---LEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVIS 826
           L ++  ++     RL+   +G Q     + D+   +A    A S +  YL + +  G ++
Sbjct: 92  LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAW-TLAFSPDSQYLATGTHVGKVN 147
Query: 827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 886
           ++ V + K   ++        S+A++P D   +A G  D  I I++  + +++  LEGH+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 887 KRVTGLVFSDALNILVSSGGDAQIFVWDV 915
             +  L FS    +LV++  D  I ++DV
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 807 CFALSKNDA-YLFSASGGVISLYIVMT------FKTILTIMPPSPTATSLAFNPHDNNVI 859
           C+ L+ N A  L ++ GG   + I  T       K++L+      T   +A++P  N + 
Sbjct: 19  CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLA 77
Query: 860 AIGMDDST-ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916
           +   D +T I   N    E ++ LEGH   V  + ++ + N+L +   D  ++VW+VD
Sbjct: 78  SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1092
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.58
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.58
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.35
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.33
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.33
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.31
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.3
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.29
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.26
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.22
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.18
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.13
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.03
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.97
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.95
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.91
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.89
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.86
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.86
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.84
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.84
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.82
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.74
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.7
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.67
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.66
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.6
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.55
3ott_A	758	Two-component system sensor histidine kinase; beta	98.52
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.49
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.47
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.46
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.44
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.42
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.36
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.36
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.35
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.35
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.34
3ott_A	758	Two-component system sensor histidine kinase; beta	98.33
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.31
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.31
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.26
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.26
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.22
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.15
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.14
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.01
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.0
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.89
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.83
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.82
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.74
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.65
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.59
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.56
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.55
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.51
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.35
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.27
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.26
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.25
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.25
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.2
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.05
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.97
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.93
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.8
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.76
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.67
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.65
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.62
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	96.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.47
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.08
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.01
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.97
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.95
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.85
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.53
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.51
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.35
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.25
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.03
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.7
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.7
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.6
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.46
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	94.17
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.8
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.48
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.08
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.91
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.89
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.52
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.02
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.99
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	89.52
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	88.6
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.33
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	87.56
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	84.55
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	83.12
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.91
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.24

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7e-69  Score=648.49  Aligned_cols=567  Identities=22%  Similarity=0.338  Sum_probs=490.0

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .+.|+||++.|++++|||||+ +||+|+.|++|+|||. +++.+..                   +.+|...|.+++|||
T Consensus         9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp   67 (577)
T 2ymu_A            9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP   67 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred             eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence            467999999999999999998 6899999999999995 6666654                   778999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ||++||+++.|++|+|||+. ++.+   ..+.+|...|.+++|+||++  +|++++.|+.+++|+.. ........+|..
T Consensus        68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~  140 (577)
T 2ymu_A           68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS  140 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred             CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence            99999999999999999975 4433   37889999999999999999  89999999999999954 455667788999


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .+..+.+.+  ++..+++++.++.+++|+... ........+...+..+.++|+++++++++.    ++.|++||. +++
T Consensus       141 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~  212 (577)
T 2ymu_A          141 SVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ  212 (577)
T ss_dssp             CEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred             ceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence            999998854  667899999999999998543 445566678889999999999999999986    667999995 677


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE
Q 001358          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i  646 (1092)
                      .+..+.+|.   ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+  ...|.+++|+|+++++++++.|+.|
T Consensus       213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTV  286 (577)
T ss_dssp             EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence            888888887   89999999999999999999999999996 46777777655  3468999999999999999999999


Q ss_pred             EEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceec
Q 001358          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1092)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  726 (1092)
                      ++|+.. ++....+.+|...+.+++++                      |+++.+++++.|+.+++|+.....   ... 
T Consensus       287 ~~w~~~-~~~~~~~~~h~~~v~~~~~~----------------------~~~~~l~t~~~d~~i~~w~~~~~~---~~~-  339 (577)
T 2ymu_A          287 KLWNRN-GQLLQTLTGHSSSVWGVAFS----------------------PDGQTIASASDDKTVKLWNRNGQH---LQT-  339 (577)
T ss_dssp             EEEETT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTSCE---EEE-
T ss_pred             EEEeCC-CcEEEEEecCCCCeEEEEEC----------------------CCCCEEEEEeCCCeEEEEeCCCCe---eEE-
Confidence            999964 56777888999999988886                      788899999999999999965321   111 


Q ss_pred             ccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~  806 (1092)
                       +  .+|...+.+++|+|+++.+++++.+|.+++|+...                       ..+....    +|...|.
T Consensus       340 -~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~  389 (577)
T 2ymu_A          340 -L--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVR  389 (577)
T ss_dssp             -E--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEE
T ss_pred             -E--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeE
Confidence             1  34788999999999999999999999999998422                       1122221    3888999


Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccc
Q 001358          807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      +++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus       390 ~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~  466 (577)
T 2ymu_A          390 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGH  466 (577)
T ss_dssp             EEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC
Confidence            999999999999998 799999995 5778889999999999999999 8999999999999999996 56788899999


Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEc
Q 001358          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA  964 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~  964 (1092)
                      ...|++++|+||+++|++++.|+.|++||... +     .++...+|..   .|.+++|+|||++||+ +.|+.|++||.
T Consensus       467 ~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          467 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            99999999999999999999999999999654 2     3344455544   7999999999999999 57899999996


Q ss_pred             CCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001358          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1092)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd 1006 (1092)
                       +++++.. +.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus       538 -~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          538 -NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence             5777766 568999999999999999999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.2e-67  Score=630.38  Aligned_cols=565  Identities=21%  Similarity=0.315  Sum_probs=484.2

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .|.||++.|++++|||||++||+|+.|++|+|||. +++.+   .++.+|.+.|++++|+||++  +|++++.|++|+||
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~---~~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vW   84 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL---QTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLW   84 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEE---EEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEE---EEEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEE
Confidence            38899999999999999999999999999999996 45444   37889999999999999999  89999999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      | .+++.+..+.+|...|.+++|++  ++.+|++++.|+.+++|+... ........+...+..+.++|+++.++.++. 
T Consensus        85 d-~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-  159 (577)
T 2ymu_A           85 N-RNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD-  159 (577)
T ss_dssp             E-TTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET-
T ss_pred             E-CCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc-
Confidence            9 57889999999999999999954  778999999999999999754 445566777889999999999999998875 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         +..+.+|+.. .........+.   ..+..+.++|+++++++++.|+.|++||. +++.+..+..+.  ..|.+++|
T Consensus       160 ---~~~~~~~~~~-~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~  229 (577)
T 2ymu_A          160 ---DKTVKLWNRN-GQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAF  229 (577)
T ss_dssp             ---TSEEEEECTT-SCEEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEE
T ss_pred             ---ccceeccccc-eeeeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEE
Confidence               5568888864 44455556655   89999999999999999999999999996 567777777654  46899999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccccc
Q 001358          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1092)
                      +|++++|++++.|+.|++|+.. ++.+..+.+|...+.+++++                      |+++.+++++.|+.+
T Consensus       230 s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~----------------------~d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          230 SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFR----------------------PDGQTIASASDDKTV  286 (577)
T ss_dssp             CTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEc----------------------CCCCEEEEEeCCCEE
Confidence            9999999999999999999964 56788888999999988886                      788899999999999


Q ss_pred             ceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc
Q 001358          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1092)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1092)
                      ++|+....   ...    ...+|...|.+++|+|+++.+++++.||.+++|+.....                       
T Consensus       287 ~~w~~~~~---~~~----~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------  336 (577)
T 2ymu_A          287 KLWNRNGQ---LLQ----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------  336 (577)
T ss_dssp             EEEETTSC---EEE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------
T ss_pred             EEEeCCCc---EEE----EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------
Confidence            99995421   111    113588899999999999999999999999999854321                       


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEE
Q 001358          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  869 (1092)
Q Consensus       791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~  869 (1092)
                      +...  .  +|...+.+++|+|+++++++++ ++.+++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|+
T Consensus       337 ~~~~--~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          337 LQTL--T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK  410 (577)
T ss_dssp             EEEE--C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred             eEEE--e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence            2221  1  3888999999999999999998 699999995 5788889999999999999999 899999999999999


Q ss_pred             EEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCC
Q 001358          870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1092)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~  949 (1092)
                      +||. +++.+..+.+|...|++++|+||+++|++++.|++|++||....      .+....++..   .|.+++|+||++
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~  480 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQ  480 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSC
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCC
Confidence            9995 57888999999999999999999999999999999999997642      2333344443   799999999999


Q ss_pred             EEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCcc
Q 001358          950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus       950 ~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
                      +|++ +.|+.|++||. +++++.. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+.        .|.
T Consensus       481 ~las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~  549 (577)
T 2ymu_A          481 TIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHS  549 (577)
T ss_dssp             EEEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCS
T ss_pred             EEEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCC
Confidence            9999 57899999995 5777766 5689999999999999999999999999999996 577776665        245


Q ss_pred             CcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358         1029 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1029 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      ..|.  +++|+| |+.+|++++.||+|++||
T Consensus       550 ~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          550 SSVW--GVAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             SCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             CCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence            5665  678999 589999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.1e-67  Score=630.41  Aligned_cols=576  Identities=15%  Similarity=0.183  Sum_probs=476.5

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+++.+.+++|||||+ +||+++ +++|+|||+.+++....                   +.+|...|++++|||||++|
T Consensus        16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l   74 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC   74 (611)
T ss_dssp             CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence            4577899999999998 578876 57999999998876654                   77999999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCCCceeEEEecCCcc
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      |+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++  .|++++.+    +.|++||  +++.+..+.+|...
T Consensus        75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~  149 (611)
T 1nr0_A           75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA  149 (611)
T ss_dssp             EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred             EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence            999999999999998665432 236789999999999999999  67777754    3566666  67778889999999


Q ss_pred             eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358          488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       488 v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      |++++|+|  ++. .|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++.    ++.|++||..+++
T Consensus       150 v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~  223 (611)
T 1nr0_A          150 MNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT  223 (611)
T ss_dssp             EEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred             ceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCc
Confidence            99999976  444 6999999999999999888888889999999999999999999999986    6679999999999


Q ss_pred             EEEEEe-------eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEE
Q 001358          567 IKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLA  638 (1092)
Q Consensus       567 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~  638 (1092)
                      .+..+.       +|.   +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.|  ++..++
T Consensus       224 ~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  298 (611)
T 1nr0_A          224 KTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV  298 (611)
T ss_dssp             EEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred             EeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence            888874       455   89999999999999999999999999999999998888654221 12334445  788999


Q ss_pred             EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1092)
                      +++.|+.+++|+...+.....+.+|...|.+++++                      ||++++++++.|++|++||+..+
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999988888889999999999996                      78999999999999999998643


Q ss_pred             cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  798 (1092)
                      ...     .....+|...|.+++|++++ .+++++.|+.+++|+.........                 . .....   
T Consensus       357 ~~~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~---  409 (611)
T 1nr0_A          357 ISN-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK---  409 (611)
T ss_dssp             CEE-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE---
T ss_pred             cee-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee---
Confidence            221     11123588899999999877 588999999999998754321000                 0 00001   


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                        ......+++|+|+|+.++++.++.+++|+  .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.++..
T Consensus       410 --~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~  482 (611)
T 1nr0_A          410 --LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV  482 (611)
T ss_dssp             --CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE
T ss_pred             --cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce
Confidence              23346789999999988888899999999  344 45554 778899999999 899999999999999999987653


Q ss_pred             --eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E
Q 001358          879 --ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V  954 (1092)
Q Consensus       879 --~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~  954 (1092)
                        +.. .+|...|++++|||||++|++++.|++|++|++.+ ++...   .....+|.   ..|.+++|+|||++||+ +
T Consensus       483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasgs  555 (611)
T 1nr0_A          483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATGS  555 (611)
T ss_dssp             EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEEE
T ss_pred             eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEEE
Confidence              334 67999999999999999999999999999999987 33211   00122244   37999999999999999 6


Q ss_pred             eCCcEEEEEcCCceeee-eeccCC-CcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          955 HETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       955 ~d~~v~lwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      .|++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus       556 ~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            89999999998876332 446789 89999999999998 9999999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.1e-65  Score=670.05  Aligned_cols=619  Identities=14%  Similarity=0.178  Sum_probs=513.1

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ....+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+..                   +.+|...|.+++|+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s  666 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS  666 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred             ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence            3457789999999999999998 689999999999999999987765                   77899999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      |||++||+++.|++|+|||+.+++.+.   .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.
T Consensus       667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence            999999999999999999999987655   67899999999999997655589999999999999999999999999999


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------------CCCceEEEEEecCCCEEEEEecCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------------~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      ..|.+++|++  ++.++++++.||.|++||+.+......+..             ....+.+++|+|+|+.+++++    
T Consensus       744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----  817 (1249)
T 3sfz_A          744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----  817 (1249)
T ss_dssp             SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred             CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence            9999999965  678999999999999999988766554432             123678899999999999986    


Q ss_pred             CceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                       ++.+.+||..++.....+. +|.   ..+.+++|+|++..+++++.||.|++||+.++..+..+..|.  ..|.+++|+
T Consensus       818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~s  891 (1249)
T 3sfz_A          818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFS  891 (1249)
T ss_dssp             -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEEC
T ss_pred             -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEEC
Confidence             4569999999999888776 444   899999999999999999999999999999999998887664  469999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      |+++++++++.||.|++|+..+.........  .......+                      .+++..++.....+.+.
T Consensus       892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~  947 (1249)
T 3sfz_A          892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQ  947 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEE
T ss_pred             CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceE
Confidence            9999999999999999999764321111110  00011111                      13344444455555555


Q ss_pred             eeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCce
Q 001358          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1092)
                      ++......   ..      ......+.+++++|+++.+++++.+|.+++|++....                      ..
T Consensus       948 ~~~~~~~~---~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~  996 (1249)
T 3sfz_A          948 LIAGKTGQ---ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VF  996 (1249)
T ss_dssp             EEEESSCC---EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CE
T ss_pred             EEecCcce---EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------ee
Confidence            55533211   11      1135679999999999999999999999999875432                      12


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001358          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1092)
                      ..  +.  +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++
T Consensus       997 ~~--~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A          997 SS--GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp             EE--CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred             ee--cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence            22  11  4889999999999999999997 7999999999988764 557899999999999 65 6788999999999


Q ss_pred             EEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358          871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       871 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      ||+.+++.+..+.+|.+.|++++|+||+++|++++.||+|++||+.+++     .+....+|..   .|.+++|+|||++
T Consensus      1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A         1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp             EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred             EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence            9999999999999999999999999999999999999999999999865     3445555554   7999999999999


Q ss_pred             EEE-EeCCcEEEEEcCCceeeeee--------ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccc
Q 001358          951 FLL-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus       951 la~-~~d~~v~lwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
                      |++ +.|+.|++||+.+++.+..+        ..+|.+.|++++|||||++|++++  |.|++||+.+++.+..+.    
T Consensus      1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~---- 1215 (1249)
T 3sfz_A         1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY---- 1215 (1249)
T ss_dssp             EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC----
T ss_pred             EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee----
Confidence            999 57899999999999887654        256899999999999999999885  899999999998876554    


Q ss_pred             cCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358         1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                          .|...|.  +++|+| |+.+|++++.||.|++|++.+
T Consensus      1216 ----~~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A         1216 ----TNGTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp             ----CSSCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred             ----ccCCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence                1234454  567888 578999999999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.5e-63  Score=601.88  Aligned_cols=572  Identities=11%  Similarity=0.106  Sum_probs=456.6

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      .+.+.+.+++|+|||++||+++ ++.|++|++.+++...   .+.+|...|++++|+|||+  +|++|+.|++|+|||+.
T Consensus        16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~   89 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTT   89 (611)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESS
T ss_pred             cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeECC
Confidence            4677889999999999999997 4689999998876554   6889999999999999999  89999999999999987


Q ss_pred             CCc--eeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEecCCC-EEEE
Q 001358          474 TGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFS  546 (1092)
Q Consensus       474 ~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~  546 (1092)
                      +++  ....+.+|.++|.+++|++  ++++|++++.+    +.|++||  .+.....+.+|...|.+++|+|++. .|++
T Consensus        90 ~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s  165 (611)
T 1nr0_A           90 QTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIIS  165 (611)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             CCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEE
Confidence            554  4567889999999999955  67889988865    3677776  5556667888999999999999997 5888


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CC
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GG  621 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~  621 (1092)
                      ++.    ++.|++||..+++....+.+|.   ..|.+++|+|+++++++++.|++|++||..+++.+..+...     ++
T Consensus       166 ~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h  238 (611)
T 1nr0_A          166 GSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH  238 (611)
T ss_dssp             EET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             EeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence            876    6679999999999999999888   89999999999999999999999999999999988887421     34


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccc---cceeeeecCCcccccccccCCceeecCCCCCCc
Q 001358          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV  698 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~  698 (1092)
                      ...|.+++|+|++++|++++.|++|++||+.+++.+..+..+..   ....+.                        .++
T Consensus       239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~  294 (611)
T 1nr0_A          239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WTK  294 (611)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------ECS
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------EcC
Confidence            45799999999999999999999999999998877766543211   111111                        247


Q ss_pred             ccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCccccccc
Q 001358          699 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV  778 (1092)
Q Consensus       699 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~  778 (1092)
                      +.+++++.|+.+++|+.......      ....+|...|.+++|+|+|+.+++++.|+.+++|++...            
T Consensus       295 ~~l~s~s~d~~i~~~~~~~~~~~------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~------------  356 (611)
T 1nr0_A          295 QALVSISANGFINFVNPELGSID------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG------------  356 (611)
T ss_dssp             SCEEEEETTCCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------
T ss_pred             CEEEEEeCCCcEEEEeCCCCCcc------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC------------
Confidence            78999999999999996533211      112358899999999999999999999999999986543            


Q ss_pred             CCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE---ecCCCCCeEEEEEcCCC
Q 001358          779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHD  855 (1092)
Q Consensus       779 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d  855 (1092)
                                .+...  + ..+|...|.+++|++++.++..+.|+.+++|+..++.....   .........+++|+| +
T Consensus       357 ----------~~~~~--~-~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d  422 (611)
T 1nr0_A          357 ----------ISNRV--F-PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-D  422 (611)
T ss_dssp             ----------CEEEC--S-SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-T
T ss_pred             ----------ceeee--c-ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-C
Confidence                      21111  1 12488999999999888655555589999999876543210   011234567899999 7


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      +.+++++ .++.+++|+  .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++....   +.. .+|.  
T Consensus       423 g~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~--  491 (611)
T 1nr0_A          423 GDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP--  491 (611)
T ss_dssp             SSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS--
T ss_pred             CcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC--
Confidence            8777776 467899998  344 55555 88899999999999999999999999999998754322   122 2333  


Q ss_pred             CCCceEEEEecCCCEEEE-EeCCcEEEEEcCC-ceeeee-eccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 001358          936 APSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       936 ~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
                       ..|.+++|||||++|++ +.|++|++||+.+ ++.... ...+|...|.+++|||||++|++++.|++|++|++.++..
T Consensus       492 -~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~  570 (611)
T 1nr0_A          492 -AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  570 (611)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             -CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence             37999999999999999 6889999999987 666554 3445999999999999999999999999999999998753


Q ss_pred             EE-eeccccccCCCCc-cCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1013 QC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1013 ~~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .. ...       ..| ...|.  +++|+|+ +. |++++.||+|++|+++
T Consensus       571 ~~~~~~-------~~h~~~~v~--~v~fs~d-~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          571 HPIIIK-------GAHAMSSVN--SVIWLNE-TT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             CCEEET-------TSSTTSCEE--EEEEEET-TE-EEEEETTSCEEEEECC
T ss_pred             ccchhh-------ccCcccCee--EEEEcCC-CE-EEEecCCCCEEEEecc
Confidence            21 111       113 34455  6788884 55 9999999999999983

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-60  Score=581.95  Aligned_cols=559  Identities=11%  Similarity=0.155  Sum_probs=484.6

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC----CceeeeeeeeeecccccceeEEeeecCCCCc-EEEEEEC
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS  405 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~-V~~l~~s  405 (1092)
                      ..|.+.|.+++|||||+ +||+++ ++.|+|||+.++    +....                   +.+|... |.+++|+
T Consensus        15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s   73 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS   73 (615)
T ss_dssp             CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred             CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence            36888999999999999 577776 789999999988    65544                   7789999 9999999


Q ss_pred             C--CCCEEEEEeCCCEEEEEEccCCC-----CccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCC
Q 001358          406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT  474 (1092)
Q Consensus       406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~  474 (1092)
                      |  |+++||+++.||.|++||+.++.     .......+.+|...|.+++|+|+++  ++++++.+    +.|++||  +
T Consensus        74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~  149 (615)
T 1pgu_A           74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S  149 (615)
T ss_dssp             SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred             cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence            9  99999999999999999997651     1123346778999999999999999  78888877    6788887  7


Q ss_pred             CceeEEEecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEecC-CCEEEEEec
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT  549 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~d-g~~l~~~~~  549 (1092)
                      ++.+..+.+|...|.+++|++  ++. ++++++.||.|++||+.+.+....+..+..   .|.+++|+|+ ++++++++.
T Consensus       150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            788899999999999999965  444 899999999999999999888888888888   9999999999 999999986


Q ss_pred             CCCCceeEEEEeCCCCeEEEEE-e---eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC--CC
Q 001358          550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP  623 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~--~~  623 (1092)
                          ++.|++||+.+++.+..+ .   .|.   ..|.+++|+ +++++++++.|+.|++||+.+++.+..+..+..  ..
T Consensus       228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  299 (615)
T 1pgu_A          228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN  299 (615)
T ss_dssp             ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred             ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence                567999999999999888 5   565   899999999 999999999999999999999999988876521  12


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      .+.++.|+ +++++++++.||.|++|++.+++.+..+.+|...+.++++ |.                         +++
T Consensus       300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~  352 (615)
T 1pgu_A          300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LIS  352 (615)
T ss_dssp             CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEE
T ss_pred             ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEE
Confidence            45677775 8999999999999999999999899999999999998888 52                         788


Q ss_pred             eccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccc
Q 001358          704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1092)
Q Consensus       704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~  783 (1092)
                      ++.|+.+++|++.        .+.   ..|...|.+++| +++..+++++.|+.+++|++....                
T Consensus       353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~----------------  404 (615)
T 1pgu_A          353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE----------------  404 (615)
T ss_dssp             EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred             ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence            9999999999976        111   458899999999 667789999999999999875432                


Q ss_pred             cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe
Q 001358          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1092)
Q Consensus       784 ~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1092)
                                       ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+   +++|++++
T Consensus       405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~  463 (615)
T 1pgu_A          405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL  463 (615)
T ss_dssp             -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred             -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence                             1125788999999999999888999999999999988887 88899999998   67999999


Q ss_pred             C-CCeEEEEEcCCceee-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCC-CcCCCCCce
Q 001358          864 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET  940 (1092)
Q Consensus       864 ~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~  940 (1092)
                      . ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++     .+....+ |..   .|.
T Consensus       464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~h~~---~v~  535 (615)
T 1pgu_A          464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTS---KIN  535 (615)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSS---CEE
T ss_pred             cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc-----ceeEeecCCCC---cee
Confidence            9 999999999988766 7788899999999999999999999999999999999865     3344444 443   799


Q ss_pred             EEEEec----------CCCEEEE-EeCCcEEEEEcCCc-eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          941 HIQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       941 ~l~~s~----------dg~~la~-~~d~~v~lwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      +++|+|          ++++|++ +.|+.|++||+.++ +++.. +.+|...|.+++|+|||+ |++++.||+|++|++.
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            999999          9999999 57899999999988 55554 678999999999999999 9999999999999997


Q ss_pred             CC
Q 001358         1009 NL 1010 (1092)
Q Consensus      1009 ~~ 1010 (1092)
                      ++
T Consensus       614 ~~  615 (615)
T 1pgu_A          614 LE  615 (615)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-58  Score=607.96  Aligned_cols=587  Identities=16%  Similarity=0.188  Sum_probs=497.5

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|||||++||+|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+|+++  ++++++.|++|++||
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWD  685 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999987554   7889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.  
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--  763 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA--  763 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--
Confidence            999999999999999999999988778889999999999999999999999999999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeecc----------ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                        ++.|++||+.+++....+....          .....+.+++|+|++..+++++ ++.+.+||..++.....+... +
T Consensus       764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-~  839 (1249)
T 3sfz_A          764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-H  839 (1249)
T ss_dssp             --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-S
T ss_pred             --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-C
Confidence              6679999999998877765321          0123688899999999999887 689999999999988877632 2


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ...+.+++|+|+++++++++.||.|++|+..++..+..+.+|...|.+++++                      |+++.+
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~l  897 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSSF  897 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEE
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCEE
Confidence            3579999999999999999999999999999999999999999999999996                      688899


Q ss_pred             eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      ++++.|+.+++|++.........        .......+.+.+++..+++....+.+.++.....               
T Consensus       898 ~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  954 (1249)
T 3sfz_A          898 LTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG---------------  954 (1249)
T ss_dssp             EEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---------------
T ss_pred             EEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc---------------
Confidence            99999999999997643222111        1223345667777777777777777777654322               


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                             .....       +...+.+++|+|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|+
T Consensus       955 -------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1019 (1249)
T 3sfz_A          955 -------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLI 1019 (1249)
T ss_dssp             -------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEE
T ss_pred             -------eEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEE
Confidence                   11111       456799999999999999998 69999999999999999999999999999999 899999


Q ss_pred             EEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358          861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      +++.||.|++||+.+++... +.+|...|.+++|+|++ .+++++.||.|++||+.+++..     ....++..   .|.
T Consensus      1020 s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~v~ 1089 (1249)
T 3sfz_A         1020 SSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---TVL 1089 (1249)
T ss_dssp             EECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---CCC
T ss_pred             EEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---cEE
Confidence            99999999999999988764 56799999999999975 6788999999999999987633     23333433   689


Q ss_pred             EEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccc
Q 001358          941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       941 ~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      +++|+|||+++++ +.|++|++||+.+++++.. +.+|...|++++|||||++|++++.||+|++||+.+++....+.+.
T Consensus      1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A         1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp             CEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence            9999999999999 5889999999999988876 5689999999999999999999999999999999999887665322


Q ss_pred             cccCC-CCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358         1020 AYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1020 ~~~~~-~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      ..... ..|...|.  +++|+| |+.++++++  |.|++||+.....
T Consensus      1169 ~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1169 SVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             C-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred             cccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence            21111 12445555  788999 578888885  9999999976553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-57  Score=566.66  Aligned_cols=593  Identities=11%  Similarity=0.093  Sum_probs=449.5

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....||.+.|++++|+|||+ +||+|+.||+|+|||..+++...                    ...|...|.+++|+| 
T Consensus        11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-   68 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-   68 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred             ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence            34459999999999999998 79999999999999988765543                    224788999999999 


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee---------
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---------  478 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---------  478 (1092)
                      |++|++++.|++|++||+.+++.+.   .+. |.+.|++++|+|+++  ++++|+.||+|++||++++++.         
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~  142 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK  142 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence            8899999999999999999987655   443 678899999999999  8999999999999999988764         


Q ss_pred             --EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCceEEEEEe
Q 001358          479 --YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYS  538 (1092)
Q Consensus       479 --~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~i~~~~~s  538 (1092)
                        ..+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+                  ...|.+++|+
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs  220 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH  220 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred             cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence              234679999999999764 34689999999999 9999998877766654                  3579999999


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeEEEE--Ee---ecc----------ccCCceEEEEEc----CCC-CEEEEEeC
Q 001358          539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGD  598 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~----~~~-~~l~~~s~  598 (1092)
                      |+|++|++++.    ++.|++||..+++.+..  +.   +|.          .+...|.+++|+    |++ ..+++|+.
T Consensus       221 pdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          221 PNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             TTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             CCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            99999999987    66799999999987654  21   121          123479999995    443 45666766


Q ss_pred             C-----CeEEEEECC------------------CCceEEEEeCCCCCCCCceEEEcc----------CCCEEEEEeCCCe
Q 001358          599 D-----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENR  645 (1092)
Q Consensus       599 d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~  645 (1092)
                      +     +.+.+|++.                  +++....+... +...+..+++.+          ++..+++++.||.
T Consensus       297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~  375 (902)
T 2oaj_A          297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGE  375 (902)
T ss_dssp             STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSC
T ss_pred             CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCc
Confidence            5     378899842                  22334444321 123567777755          3457899999999


Q ss_pred             EEEEECCCCCeeee-------cccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358          646 IKILETPESNSVDA-------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       646 i~iw~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1092)
                      |++|++.++.....       +..|...|+++++++                                 ...++|+....
T Consensus       376 l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~---------------------------------~~~~~w~~~~~  422 (902)
T 2oaj_A          376 IETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS---------------------------------VPNKLWLGALS  422 (902)
T ss_dssp             EEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE---------------------------------EEHHHHHHHHH
T ss_pred             EEEEECCCCCcccccccCCCcccccCCCeeEEEEEE---------------------------------cCHHHHHHHHh
Confidence            99999977643322       334445566555542                                 12234542211


Q ss_pred             cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC--
Q 001358          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT--  796 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--  796 (1092)
                      .....   ..+..+|...+..++|+|+++.+++++.|++|++||+.......         ..+         ....+  
T Consensus       423 ~~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~---------~~~~l~~  481 (902)
T 2oaj_A          423 AAQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NAS---------FEVNLSR  481 (902)
T ss_dssp             TTBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBC---------EEEEHHH
T ss_pred             cccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------Cce---------EEeechh
Confidence            11011   11234577778889999999999999999999999987642100         000         00000  


Q ss_pred             -CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCc-----------------------------------------
Q 001358          797 -TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF-----------------------------------------  833 (1092)
Q Consensus       797 -~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~-----------------------------------------  833 (1092)
                       ...+|...|.+++|+|||++||+++ ||+|+|||+.++                                         
T Consensus       482 ~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  561 (902)
T 2oaj_A          482 TLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGV  561 (902)
T ss_dssp             HTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTC
T ss_pred             hcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCC
Confidence             0114888999999999999999998 799999999866                                         


Q ss_pred             ----eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE-----eec-cccCCeEEEEEc-----CCC
Q 001358          834 ----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL  898 (1092)
Q Consensus       834 ----~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pdg  898 (1092)
                          +++..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+.     .+. +|.+.|++++||     |||
T Consensus       562 ~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg  639 (902)
T 2oaj_A          562 RQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDG  639 (902)
T ss_dssp             SEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSS
T ss_pred             CCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCC
Confidence                24677889999999999999 88 99999999999999998877653     343 899999999999     886


Q ss_pred             ---CEEEEEeCCCcEEEEEc---CCCceeeeeeeecCCCCcC--CCCCceEEE-Ee----------------------cC
Q 001358          899 ---NILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KD  947 (1092)
Q Consensus       899 ---~~l~s~s~Dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-~s----------------------~d  947 (1092)
                         ++|++++.|++|++||+   .+++...     .+.++..  ..+.|.+++ |+                      ++
T Consensus       640 ~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~  714 (902)
T 2oaj_A          640 YSSILMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIP  714 (902)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCC
T ss_pred             CcceEEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCC
Confidence               89999999999999999   5555322     2222211  113566666 66                      45


Q ss_pred             CCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEE---E------EecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          948 QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       948 g~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      |.+|++ .+..++||++.++++.+.. ..|...+.++   .      |+++|..|++++.||+|++|++.+++.+..+..
T Consensus       715 ~~~l~~-~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~  792 (902)
T 2oaj_A          715 GIVLIT-GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI  792 (902)
T ss_dssp             EEEEEE-CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEEE-eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence            555444 4889999999999998875 4565666666   5      789999999999999999999999999988874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.3e-57  Score=550.45  Aligned_cols=556  Identities=11%  Similarity=0.107  Sum_probs=467.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCC----CCccceEEecccccc-eeEEEeeC--CCCcEEEEEEeCC
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD  464 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~-v~~~~~s~--d~~~l~l~s~~~d  464 (1092)
                      ...|.+.|.+++|||||++||+++ ++.|++||+.++    +...   .+.+|... |++++|+|  +++  +|++++.|
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d   87 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES   87 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence            346889999999999999999998 789999999987    4443   78899999 99999999  999  89999999


Q ss_pred             CcEEEEECCCC--------ceeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCce
Q 001358          465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC  532 (1092)
Q Consensus       465 ~~i~vwd~~~~--------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i  532 (1092)
                      +.|++||+.++        +.+..+..|..+|.+++|+  +++.+|++++.+    +.|++||  ..+....+..|...|
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v  163 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD--FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI  163 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC--TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEe--CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence            99999999855        6778889999999999995  477899999988    6788886  566777888899999


Q ss_pred             EEEEEecCCC-EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 001358          533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       533 ~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~s~dg~i~iwd~  607 (1092)
                      .+++|+|+++ .+++++.    ++.|++||..+++.+..+.+|.   .   .|.+++|+|+ ++++++++.||.|++||+
T Consensus       164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            9999999998 6888775    6779999999999999999887   6   8999999999 999999999999999999


Q ss_pred             CCCceEEEEeCC--CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccccc----ccceeeeecCCcccccc
Q 001358          608 NKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       608 ~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~  681 (1092)
                      .+++.+..+...  .+...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.    ..+.++.+         
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------  306 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---------  306 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---------
T ss_pred             CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---------
Confidence            999999888321  223569999999 99999999999999999999988877776653    23333333         


Q ss_pred             cccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEe
Q 001358          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW  761 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw  761 (1092)
                                    ++++.+++++.++.+++|++........      ..+|...|.+++| |+   +++++.||.+++|
T Consensus       307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w  362 (615)
T 1pgu_A          307 --------------TGNGRIISLSLDGTLNFYELGHDEVLKT------ISGHNKGITALTV-NP---LISGSYDGRIMEW  362 (615)
T ss_dssp             --------------EETTEEEEEETTSCEEEEETTEEEEEEE------ECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred             --------------CCCCeEEEEECCCCEEEEECCCCcEEEE------EeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence                          3688899999999999999775332211      1348899999999 88   9999999999998


Q ss_pred             eecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEec
Q 001358          762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM  840 (1092)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~  840 (1092)
                      ++.                         ++.      .+|...|.+++| +++..+++++ |+.+++||+.+++...   
T Consensus       363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~---  407 (615)
T 1pgu_A          363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS---  407 (615)
T ss_dssp             TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred             Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence            753                         011      148899999999 5566666666 8999999998765433   


Q ss_pred             CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCCc
Q 001358          841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG  919 (1092)
Q Consensus       841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~~  919 (1092)
                          .+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+  +++|++++. |+.|++||+.+++
T Consensus       408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~  478 (615)
T 1pgu_A          408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE  478 (615)
T ss_dssp             ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred             ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence                678999999 88888877 88999999999999888887 88999999999  889999999 9999999999854


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec----------
Q 001358          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC----------  988 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~----------  988 (1092)
                      ...    ....++..   .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|          
T Consensus       479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~  551 (615)
T 1pgu_A          479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI  551 (615)
T ss_dssp             EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred             ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence            221    34444443   7999999999999999 57899999999999998875444999999999999          


Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-ceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358          989 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus       989 dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      |+++|++++.||+|++||+.++ ..+..+.        .|...|.  +++|+|+ +. |++++.||.|++|++.
T Consensus       552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~~-~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWETP-ST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEET-TE-EEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcCC-CC-eEEecCCceEEEEeee
Confidence            9999999999999999999998 5665544        2445555  6778884 56 9999999999999985

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-56  Score=554.86  Aligned_cols=597  Identities=9%  Similarity=0.042  Sum_probs=436.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|...|.+++|+|||++||+|+.||+|+||+..+++...    ...|...|.+++|+| |+  +|++++.|++|++||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            55799999999999999999999999999999988764332    235788999999999 77  799999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCceEEEEEecC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN  540 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d  540 (1092)
                      +.+++++..+. |...|++++|++  ++.+|++|+.||.|++||+++....           .....|..+|.+++|+|+
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999998886 778999999954  6789999999999999999876643           123557789999999996


Q ss_pred             C-CEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------------cccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358          541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i  604 (1092)
                      + ..+++++.    ++.| +||+.+++.+..+..+               ..|...|.+++|+|++++|++++.||+|++
T Consensus       163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            4 66777654    6779 9999999999888776               112367999999999999999999999999


Q ss_pred             EECCCCceEEEEeC-----CC-----------CCCCCceEEEcc----CC-CEEEEEeCC-----CeEEEEECCC-----
Q 001358          605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE-----  653 (1092)
Q Consensus       605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~-----  653 (1092)
                      ||+.+++.+.....     +.           +...|.+++|++    ++ .++++++.+     +.+.+|+...     
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~  317 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS  317 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence            99999988764221     21           123588999964    43 567777665     3788888431     


Q ss_pred             -------------CCeeeecc-cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeecc
Q 001358          654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       654 -------------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1092)
                                   .+....+. .+...+..+.+.+.......+            ..++..+++++.|+.+++|++..+.
T Consensus       318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence                         11122221 233444444443311100000            1345578888899999999974321


Q ss_pred             Cccc-eecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358          720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       720 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  798 (1092)
                      .... .........|...|.++++++...           .+|+.....                  . +...  ..+  
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l--  431 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLL--  431 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSC--
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Ccc--
Confidence            1110 000111223557888888865322           224321100                  0 0000  012  


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceee--EEe----c-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001358          799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTI----M-----PPSPTATSLAFNPHDNNVIAIGMDDS  866 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~--~~~----~-----~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1092)
                      .+|...+.+++|+|++++|++++ |++|++||+.++...  ..+    .     +|...|.+++|+| |+++||+|+.||
T Consensus       432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg  510 (902)
T 2oaj_A          432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG  510 (902)
T ss_dssp             CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred             cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence            24777888899999999999998 899999999877421  111    1     7888999999999 999999999999


Q ss_pred             eEEEEEcCCc---------------------------------------------eeeEeeccccCCeEEEEEcCCCCEE
Q 001358          867 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL  901 (1092)
Q Consensus       867 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l  901 (1092)
                      +|+||++.++                                             +++..+.+|.+.|++++||||| +|
T Consensus       511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l  589 (902)
T 2oaj_A          511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV  589 (902)
T ss_dssp             CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred             EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence            9999999876                                             2467888999999999999999 99


Q ss_pred             EEEeCCCcEEEEEcCCCceeeeeeeecCC-CCcCCCCCceEEEEe-----cCC---CEEEE-EeCCcEEEEEc---CCce
Q 001358          902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT  968 (1092)
Q Consensus       902 ~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~s-----~dg---~~la~-~~d~~v~lwd~---~~~~  968 (1092)
                      |+|+.|++|+|||+.++.......+.... +|..   .|++++||     |||   ++|++ +.|++|++||+   .+|+
T Consensus       590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            99999999999999876543221223343 5554   89999999     886   78888 68899999999   7888


Q ss_pred             eeeeeccCC-----CcCEEEEE-Ee----------------------cCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358          969 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       969 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      +... +.+|     .++|..++ |+                      ++|..|+++  +..|+||++.+++.......  
T Consensus       667 ~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~--  741 (902)
T 2oaj_A          667 FDVQ-LMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK--  741 (902)
T ss_dssp             EEEE-EEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred             EEEE-ecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence            7766 3344     47787777 76                      455544443  77899999999988765531  


Q ss_pred             ccCCCCccCcccceE-EE------ECCCCCCEEEEEeCCCcEEEEecCCCCCc
Q 001358         1021 YLRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1066 (1092)
Q Consensus      1021 ~~~~~~~~~~v~~~~-~~------~~p~~~~~l~~~~~dg~v~~w~~~~~~~~ 1066 (1092)
                            |...+..++ +.      +++ ++..|++++.||+|++|++++.+.-
T Consensus       742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~  787 (902)
T 2oaj_A          742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQ  787 (902)
T ss_dssp             ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEE
T ss_pred             ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHH
Confidence                  111122221 24      566 4789999999999999999877643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.7e-48  Score=484.15  Aligned_cols=559  Identities=14%  Similarity=0.174  Sum_probs=428.4

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...+.+.+|++.|++++|||||+ +||+|+.||.|+|||+.+++.+..                   +.+|...|.+++|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~   63 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF   63 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence            34578899999999999999998 689999999999999999887764                   6689999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~  483 (1092)
                      +|+|++||+++.||.|++||+.+++.+.   .+.+|.+.|++++|+|+++  .|++++.|+.|++||+.++ .....+.+
T Consensus        64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            9999999999999999999999987554   6788999999999999999  7999999999999999987 67788899


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEec--CCCEEEEEecCCCCceeEEEE
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      |...|.+++|++. ++..+++++.||.|++||+........+..+. ..+..++|+|  ++.++++++.    ++.|++|
T Consensus       139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~  213 (814)
T 3mkq_A          139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW  213 (814)
T ss_dssp             CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred             CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence            9999999999652 56799999999999999998888777666554 7899999999  9999999875    6679999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EEE
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAV  639 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~  639 (1092)
                      |..+++.+..+.+|.   ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|++.. +++
T Consensus       214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~  288 (814)
T 3mkq_A          214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA  288 (814)
T ss_dssp             ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred             ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence            999999999999887   899999999999999999999999999999999999887664  46899999999873 244


Q ss_pred             EeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc--------
Q 001358          640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE--------  711 (1092)
Q Consensus       640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~--------  711 (1092)
                      ++.++.+.+|+.......            +.+                      +|+++.+++++.+....        
T Consensus       289 ~~~~~~~~~~~~~~~~~~------------~~~----------------------~~~g~~~~~~~~~~~~~~~~~~~~~  334 (814)
T 3mkq_A          289 SGFDNGFTVLSLGNDEPT------------LSL----------------------DPVGKLVWSGGKNAAASDIFTAVIR  334 (814)
T ss_dssp             EEETTEEEEEECSCCSCC------------EEE----------------------CSSSEEEEECCTTSCTTCEEEEECC
T ss_pred             EEeCCCEEEEEcCCCCce------------eEE----------------------CCCCCEEEECcccccceeeeeeecc
Confidence            445677889987655322            222                      24455555444333211        


Q ss_pred             -eeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc
Q 001358          712 -VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1092)
Q Consensus       712 -~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1092)
                       .|++.............  ..+...+.+++|+|+|+.+++++ +|.+.+|++.....                      
T Consensus       335 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~----------------------  389 (814)
T 3mkq_A          335 GNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN----------------------  389 (814)
T ss_dssp             SCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE----------------------
T ss_pred             cccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc----------------------
Confidence             12222111111111111  22556788999999999888887 89999998532110                      


Q ss_pred             eeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCC---CEEEEEeCCC
Q 001358          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDS  866 (1092)
Q Consensus       791 ~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~dg  866 (1092)
                               .+...+.+++|+|+++++++++ ++.+++|+.        +.+|...+.+++|+| ++   .+|++++.|+
T Consensus       390 ---------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~  451 (814)
T 3mkq_A          390 ---------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDG  451 (814)
T ss_dssp             ---------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETT
T ss_pred             ---------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCC
Confidence                     1345678999999999999997 699999963        345777889999999 77   5888899999


Q ss_pred             eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEE------eCCCcEEEEEcCC---------------Cceeeeee
Q 001358          867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRS  925 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~------s~Dg~i~iwd~~~---------------~~~~~~~~  925 (1092)
                      .|++||+.+++.+..+.+|..   .++|+|||++|+++      +.++.+.+|--..               +.......
T Consensus       452 ~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (814)
T 3mkq_A          452 FVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDV  528 (814)
T ss_dssp             EEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEE
T ss_pred             EEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheee
Confidence            999999999999999998875   89999999999999      6666555554210               00000111


Q ss_pred             eecCCCCcCCCCCceEEEEecCCCEEEEEe-CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001358          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~v 1004 (1092)
                      +....      ..+.+..|.  +..++... .+.+..+-  .++...  .......+..+.|.+++..++....++.+..
T Consensus       529 ~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~  596 (814)
T 3mkq_A          529 LYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYG  596 (814)
T ss_dssp             EEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEE
T ss_pred             eeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEE
Confidence            11111      135556664  34433332 34444432  222211  1123456777778899999999999999999


Q ss_pred             EECCCC
Q 001358         1005 HEASNL 1010 (1092)
Q Consensus      1005 wd~~~~ 1010 (1092)
                      |++...
T Consensus       597 ~~l~~~  602 (814)
T 3mkq_A          597 YEISLE  602 (814)
T ss_dssp             EECCHH
T ss_pred             EEECcH
Confidence            998654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.2e-46  Score=470.31  Aligned_cols=480  Identities=15%  Similarity=0.181  Sum_probs=392.7

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+|||++||+++.||.|+|||+.+++.+.   .+.+|.++|.+++|+|+++  +|++++.||.|++||
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999986554   6779999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEec-CCCEEEEEec
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1092)
                      +.+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999955  6689999999999999999887 45567788899999999999 8889999876


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                          ++.|++||+.++.....+..+.  ...+.+++|+|  ++.++++++.||.|++||+.+++.+..+..+.  ..|.+
T Consensus       162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~  233 (814)
T 3mkq_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (814)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence                6679999999888877777654  47899999999  99999999999999999999999998887664  46899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc-ceeecc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP-EISVEA  706 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~s~~~  706 (1092)
                      ++|+|+++++++++.||.|++|+..+++....+..+...+.+++++                      |++.. +++.+.
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~  291 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF  291 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence            9999999999999999999999999999999999999999999987                      45543 355666


Q ss_pred             ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCee-EEeeecCCccccCcccccccCCccccC
Q 001358          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~lw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1092)
                      ++.+.+|++...                  ...+.++|+|+.+++++.+... .++....              ...|+.
T Consensus       292 ~~~~~~~~~~~~------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------------~~~~~~  339 (814)
T 3mkq_A          292 DNGFTVLSLGND------------------EPTLSLDPVGKLVWSGGKNAAASDIFTAVI--------------RGNEEV  339 (814)
T ss_dssp             TTEEEEEECSCC------------------SCCEEECSSSEEEEECCTTSCTTCEEEEEC--------------CSCCCC
T ss_pred             CCCEEEEEcCCC------------------CceeEECCCCCEEEECcccccceeeeeeec--------------cccccc
Confidence            777888875421                  2346788999988877665321 1111000              011222


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358          786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                      ..+............+...+.+++|+|+|+++++++++.+.+|++.......     .+.+.+++|+| +++++|+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~  413 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET  413 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred             ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence            2222221111111136677899999999999999999999999987654432     35678999999 89999999999


Q ss_pred             CeEEEEEcCCceeeEeeccccCCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEE
Q 001358          866 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  942 (1092)
Q Consensus       866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  942 (1092)
                      |.|++|+        .+.+|...|.+++|+||+   .+|++++.|+.|++||+.+++     .+.....+.      ..+
T Consensus       414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v  474 (814)
T 3mkq_A          414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV  474 (814)
T ss_dssp             CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred             CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence            9999995        445688889999999998   689999999999999999865     333333332      389


Q ss_pred             EEecCCCEEEEE------eCCcEEEEEcC
Q 001358          943 QFHKDQTRFLLV------HETHLAIYEAE  965 (1092)
Q Consensus       943 ~~s~dg~~la~~------~d~~v~lwd~~  965 (1092)
                      +|+|||++|+++      .++.+.++...
T Consensus       475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~~  503 (814)
T 3mkq_A          475 IWSDNGELVMIVNTNSNGDEASGYTLLFN  503 (814)
T ss_dssp             EECTTSSEEEEEECCCSSCSCSEEEEEEC
T ss_pred             EEcCCCCEEEEEEcCcccCCceEEEEEec
Confidence            999999999997      66677766543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-45  Score=421.86  Aligned_cols=288  Identities=22%  Similarity=0.368  Sum_probs=267.3

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ..|.+|.+.|++++|+|+++ ++++|+.|++|+|||+.+++....                   +.+|...|.+++|+|+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~  161 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS  161 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence            45789999999999999998 799999999999999999987765                   7789999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      |++||+|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|++|++||+.++.++..+.+|...
T Consensus       162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence            9999999999999999999886554   6789999999999999999  8999999999999999999999999999999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC--------------------CCEEEEE
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC  547 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------g~~l~~~  547 (1092)
                      |.+++++  +++.+|++++.||+|++||+.+......+..|...|.+++|+|+                    |.+++++
T Consensus       237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            9999885  57789999999999999999999999999999999999999996                    6689998


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||+.++..+..+.+|.   ..|.+++|+|++++|++|+.||+|++||+.+++.+..+..|.  ..|.+
T Consensus       315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~  385 (410)
T 1vyh_C          315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS  385 (410)
T ss_dssp             ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred             eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence            86    6679999999999999999988   899999999999999999999999999999999999988664  46999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEC
Q 001358          628 ICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ++|+|++.+|++|+.||.|++|+.
T Consensus       386 l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.4e-40  Score=364.02  Aligned_cols=296  Identities=19%  Similarity=0.269  Sum_probs=266.6

Q ss_pred             CcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      +....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+..                   +..|...|.++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~  103 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC  103 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence            3456789999999999999999998 799999999999999999987764                   56799999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCC-ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +|+|+|++||+|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++.+..+
T Consensus       104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~  180 (340)
T 1got_B          104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence            9999999999999999999999987643 233446789999999999999875   889999999999999999999999


Q ss_pred             ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      .+|...|.+++|++  ++.++++|+.||.|++||+++......+..|...|.+++|+|++++|++++.    ++.|++||
T Consensus       181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd  254 (340)
T 1got_B          181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD  254 (340)
T ss_dssp             CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred             cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence            99999999999965  6689999999999999999999999999999999999999999999999986    66799999


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      +.+++.+..+.... ....|.+++|+|+++++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|+|.+|++++
T Consensus       255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s  331 (340)
T 1got_B          255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred             CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence            99998877765322 23579999999999999999999999999999999999888664  4699999999999999999


Q ss_pred             CCCeEEEEE
Q 001358          642 NENRIKILE  650 (1092)
Q Consensus       642 ~dg~i~iw~  650 (1092)
                      .|+.|++||
T Consensus       332 ~D~~i~iWd  340 (340)
T 1got_B          332 WDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEC
T ss_pred             CCccEEecC
Confidence            999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=364.35  Aligned_cols=298  Identities=17%  Similarity=0.243  Sum_probs=268.4

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ....++|.+|++.|++++|+||++ +||+|+.|++|+|||..+++....                   +..|...|.+++
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~  113 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACA  113 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEE
Confidence            456789999999999999999998 799999999999999999887654                   556889999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCC---ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      |+|+|++||+|+.|+.+++|++.....   ......+.+|.+.|.+++|+|++.  .|++++.|++|++||+++++.+..
T Consensus       114 ~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             ECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEE
Confidence            999999999999999999999875421   223446778999999999999999  799999999999999999999999


Q ss_pred             EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      +.+|...|.++++++.+++.+|++|+.||+|++||++++.....+..|...|.+++|+|+++++++++.    ++.|++|
T Consensus       192 ~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lw  267 (354)
T 2pbi_B          192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLY  267 (354)
T ss_dssp             EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred             EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEE
Confidence            999999999999988888899999999999999999999999999999999999999999999999986    6679999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      |+++++.+..+..+. ....+.+++|+|++.++++|+.|++|++||+.+++.+..+..|.  ..|.+++|+|+|++|+++
T Consensus       268 d~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sg  344 (354)
T 2pbi_B          268 DLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSG  344 (354)
T ss_dssp             ETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEE
T ss_pred             ECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEE
Confidence            999998877766443 23478999999999999999999999999999999998887654  469999999999999999


Q ss_pred             eCCCeEEEEE
Q 001358          641 ANENRIKILE  650 (1092)
Q Consensus       641 ~~dg~i~iw~  650 (1092)
                      +.|+.|++|+
T Consensus       345 s~D~~v~vW~  354 (354)
T 2pbi_B          345 SWDHTLRVWA  354 (354)
T ss_dssp             ETTSEEEEEC
T ss_pred             cCCCCEEecC
Confidence            9999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.4e-40  Score=361.40  Aligned_cols=294  Identities=15%  Similarity=0.234  Sum_probs=265.4

Q ss_pred             ceeEecccCCCCceEEeecCC----CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spd----g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~  400 (1092)
                      .....+++|.+.|++++|+|+    ++ +|++|+.|++|+|||+.+++....                 ..+.+|...|.
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~   84 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVV   84 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEE
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEE
Confidence            445778899999999999985    44 799999999999999987654321                 12779999999


Q ss_pred             EEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       401 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +++|+|++.++++++.|++|++||+.+++.+.   .+..|...+.+++|+|+++  +|++++.|+.|++||+++++....
T Consensus        85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A           85 SVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEE
Confidence            99999999999999999999999999986554   6778889999999999999  899999999999999999999999


Q ss_pred             EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      +..|...|.+++|+  +++++|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++.    ++.|++|
T Consensus       160 ~~~~~~~v~~~~~s--pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iw  233 (321)
T 3ow8_A          160 LDTRGKFILSIAYS--PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIY  233 (321)
T ss_dssp             EECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEE
T ss_pred             ecCCCceEEEEEEC--CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEE
Confidence            99999999999995  47789999999999999999999888899999999999999999999999976    6679999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      |+.+++....+.+|.   ..|.+++|+|++.+|++++.|++|++||+.+++++..+..+.  ..|.+++|+|++++|+++
T Consensus       234 d~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~  308 (321)
T 3ow8_A          234 DVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSV  308 (321)
T ss_dssp             ETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEE
T ss_pred             ECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEE
Confidence            999999999999888   899999999999999999999999999999999999987654  469999999999999999


Q ss_pred             eCCCeEEEEECC
Q 001358          641 ANENRIKILETP  652 (1092)
Q Consensus       641 ~~dg~i~iw~~~  652 (1092)
                      +.||.|++||.+
T Consensus       309 ~~d~~i~vwd~p  320 (321)
T 3ow8_A          309 GDDQEIHIYDCP  320 (321)
T ss_dssp             ETTCCEEEEECC
T ss_pred             eCCCeEEEEeCC
Confidence            999999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.5e-39  Score=352.72  Aligned_cols=293  Identities=18%  Similarity=0.309  Sum_probs=257.4

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...++|.+|++.|++++|+|||+ +|++|+.||+|+|||+.++..+..                   +.+|..+|.+++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~   63 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF   63 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence            45678999999999999999998 789999999999999999887764                   6679999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~  483 (1092)
                      +|++++|++|+.|++|++||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||++++ .....+.+
T Consensus        64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~  138 (304)
T 2ynn_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG  138 (304)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred             eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence            9999999999999999999999987554   6889999999999999999  8999999999999999987 45578899


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEec--CCCEEEEEecCCCCceeEEEE
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      |...|.+++|+|. ++.+|++|+.||+|++||+........+. .+...+..+.|+|  ++.+|++++.    ++.|++|
T Consensus       139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW  213 (304)
T 2ynn_A          139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW  213 (304)
T ss_dssp             CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred             cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence            9999999999763 45799999999999999998877666554 4556888999987  7789999986    6779999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC--EEE
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA  638 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~  638 (1092)
                      |+.+++++..+.+|.   ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+.  ..+.+++|+|++.  +++
T Consensus       214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a  288 (304)
T 2ynn_A          214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA  288 (304)
T ss_dssp             ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred             eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence            999999999999988   899999999999999999999999999999999999987653  4588999999875  577


Q ss_pred             EEeCCCeEEEEECCC
Q 001358          639 VIANENRIKILETPE  653 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~  653 (1092)
                      +++.| .+.+|++..
T Consensus       289 sg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          289 SGFDN-GFTVLSLGN  302 (304)
T ss_dssp             EEETT-EEEEEECC-
T ss_pred             EecCC-ceEEEEecc
Confidence            77655 567777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.3e-39  Score=352.70  Aligned_cols=301  Identities=19%  Similarity=0.239  Sum_probs=259.5

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+..+|.+|++.|++++|+|++..+|++|+.|++|++||+.+.......              ....+.+|...|.+++|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~   73 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL   73 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence            3457899999999999999987448999999999999998754432211              11237799999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|||++|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|++|++||+. ++++..+.+|
T Consensus        74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h  147 (319)
T 3frx_A           74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH  147 (319)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence            9999999999999999999999986554   6889999999999999999  89999999999999975 6678889999


Q ss_pred             CcceEEEeecccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEE
Q 001358          485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1092)
Q Consensus       485 ~~~v~~i~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1092)
                      ...|.++.+.+..    ++.++++++.|+.|++||++.......+..|...|.+++|+|+|++|++++.    ++.|++|
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw  223 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW  223 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence            9999999997643    4568999999999999999998888889999999999999999999999986    6789999


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC------CCCCCceEEEccCC
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG  634 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~  634 (1092)
                      |+.+++.+..+..+    ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+.      +...+.+++|+|+|
T Consensus       224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  298 (319)
T 3frx_A          224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG  298 (319)
T ss_dssp             ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred             ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence            99999999888764    479999999999988887755 59999999888777765331      22357799999999


Q ss_pred             CEEEEEeCCCeEEEEECCCC
Q 001358          635 TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      ++|++++.||.|++|++.++
T Consensus       299 ~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          299 QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SEEEEEETTSCEEEEEEEEC
T ss_pred             CEEEEeecCceEEEEEEeec
Confidence            99999999999999998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.9e-39  Score=367.11  Aligned_cols=306  Identities=17%  Similarity=0.256  Sum_probs=265.7

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ..+.++|.||++.|++++|+|+|+ +|++|+.|++|+|||+.+++....                   +.+|...|.+++
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~  115 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA  115 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred             eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence            456789999999999999999998 699999999999999999887654                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCC----ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      |+|+|++||+|+.|+.|++||+.+...    ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus       116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence            999999999999999999999976421    1222357799999999999998654 69999999999999999999998


Q ss_pred             EE-----ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358          480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       480 ~~-----~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .+     .+|...|.++++++. ++.+|++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.    
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----  269 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----  269 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred             EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence            87     679999999998643 567999999999999999984 4667788899999999999999999999986    


Q ss_pred             ceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC--CCCCCCCce
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR  627 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~  627 (1092)
                      ++.|++||+.+++.+..+..+...    ...|.+++|+|+++++++|+.||.|++||..+++.+..+..  .++...|.+
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence            667999999999998888765411    13488999999999999999999999999999998877732  234567999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ++|+|+|++|++|+.|+.|++|++...+
T Consensus       350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999999987653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-38  Score=362.69  Aligned_cols=286  Identities=18%  Similarity=0.287  Sum_probs=266.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|..+|++++|+|++++|++|+.|++|+|||+.+++...   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            66899999999999999999999999999999999987665   7889999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++++..+.+|...|.+++|++  ++.+|++|+.|++|++||+.++.....+..|...+.++.++|+++++++++.  
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~--  254 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN--  254 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence            999999999999999999999965  6679999999999999999999999999999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC--------------------CCEEEEEeCCCeEEEEECCCCc
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                        ++.|++||+.+++....+.+|.   ..|.+++|+|+                    +.++++|+.|++|++||+.++.
T Consensus       255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence              6679999999999999998887   89999999996                    6789999999999999999999


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeec
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                      .+..+..|.  ..|.+++|+|++++|++++.||.|++||..+++.+..+.+|...|.+++|+                  
T Consensus       330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------  389 (410)
T 1vyh_C          330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------  389 (410)
T ss_dssp             EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred             eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence            999988664  468999999999999999999999999999999999999999999999996                  


Q ss_pred             CCCCCCcccceeeccccccceece
Q 001358          692 EDPKEDVKPEISVEAENKSEVEKP  715 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~  715 (1092)
                          |++.++++++.|++|++|+.
T Consensus       390 ----~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          390 ----KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----SSSSCEEEEETTSEEEEEC-
T ss_pred             ----CCCCEEEEEeCCCcEEEEeC
Confidence                67889999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.3e-38  Score=347.89  Aligned_cols=286  Identities=14%  Similarity=0.182  Sum_probs=262.9

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+||+++|++|+.|++|++||+.+++.+.   .+..|...|.+++|+|+++  ++++|+.|+.|++||
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~  125 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence            77999999999999999999999999999999999886554   6778999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      +.++    +....+.+|...|.++.|.+.  + .+++++.|++|++||+.++.....+..|...|.+++|+|++++++++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9876    356778899999999999653  3 59999999999999999999888999999999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||+.++..+..+.+|.   ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus       203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence            86    6679999999999999999888   8999999999999999999999999999999988888765555456899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|+|+++++++.|+.|++||..++..+..+.+|...|.+++++                      |++.++++++.|
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D  333 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence            9999999999999999999999999999999999999999999996                      789999999999


Q ss_pred             cccceec
Q 001358          708 NKSEVEK  714 (1092)
Q Consensus       708 ~~i~~w~  714 (1092)
                      ++|++|+
T Consensus       334 ~~i~iWd  340 (340)
T 1got_B          334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             ccEEecC
Confidence            9999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.6e-38  Score=350.55  Aligned_cols=306  Identities=15%  Similarity=0.244  Sum_probs=250.5

Q ss_pred             ceeEecccCCC-CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~-~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .++++|.+|.+ .|++++|+|||+ +||+|+.|++|+|||+.++.....                .....+|...|.+++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~   68 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVA   68 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEE
Confidence            56788999988 999999999998 699999999999999988754321                112468999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc---eeEE
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYS  480 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~  480 (1092)
                      |+|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++  +|++|+.|++|++||+.++.   ++..
T Consensus        69 ~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~  145 (345)
T 3fm0_A           69 WSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSV  145 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEE
Confidence            999999999999999999999987642 23447889999999999999999  89999999999999998763   4667


Q ss_pred             EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      +.+|...|.+++|++  ++.+|++++.|++|++||.....  ....+..|...|.+++|+|+|++|++++.    ++.|+
T Consensus       146 ~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~  219 (345)
T 3fm0_A          146 LNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVR  219 (345)
T ss_dssp             ECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEE
T ss_pred             ecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEE
Confidence            889999999999965  66799999999999999998765  34577889999999999999999999986    66799


Q ss_pred             EEeCCCC---------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-------EEEE
Q 001358          559 EWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-------LTTI  616 (1092)
Q Consensus       559 iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~-------~~~~  616 (1092)
                      +||....               .++..+.+.  +...|.+++|+|++..+++++.|+.|++|+...+..       ....
T Consensus       220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~  297 (345)
T 3fm0_A          220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH  297 (345)
T ss_dssp             EEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred             EeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence            9996321               233344442  247899999999999999999999999999875431       1111


Q ss_pred             eCCCCCCCCceEEEccCC-CEEEEEeCCCeEEEEECCCCCeee
Q 001358          617 DAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       617 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      ...++...|.+++|+|++ .+|++++.||.|++|+..+++...
T Consensus       298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            122445679999999987 599999999999999998876543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.2e-39  Score=360.14  Aligned_cols=320  Identities=16%  Similarity=0.206  Sum_probs=230.7

Q ss_pred             ceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCC
Q 001358          701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP  780 (1092)
Q Consensus       701 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~  780 (1092)
                      ++.++.+.....|++....+          ..|...|.+++|+|||++|++++.|. +++||-               .+
T Consensus        19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v   72 (357)
T 4g56_B           19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SI   72 (357)
T ss_dssp             -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EE
T ss_pred             EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eE
Confidence            34455567778888653322          24888999999999999999998742 233331               23


Q ss_pred             ccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE----EecCCCCCeEEEEEcCCCC
Q 001358          781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN  856 (1092)
Q Consensus       781 ~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~  856 (1092)
                      ++|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++...    ...+|...|++++|+| ++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg  151 (357)
T 4g56_B           73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG  151 (357)
T ss_dssp             EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred             EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence            334443333222211112247889999999999988877778999999999877543    3457899999999999 89


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCC
Q 001358          857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1092)
                      ++|++|+.||.|++||+.+++++..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++....  +. ...+.  
T Consensus       152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~~-~~~~~--  226 (357)
T 4g56_B          152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--ID-FCASD--  226 (357)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--CC-CTTCC--
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--ee-ecccc--
Confidence            9999999999999999999999999999999999999999875 789999999999999988653321  11 11122  


Q ss_pred             CCCceEEEEecCC-CEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCce
Q 001358          936 APSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1012 (1092)
Q Consensus       936 ~~~v~~l~~s~dg-~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~s~Dg~i~vwd~~~~~~ 1012 (1092)
                       ..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++|+.||+|+|||+.+++.
T Consensus       227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~  304 (357)
T 4g56_B          227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV  304 (357)
T ss_dssp             -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred             -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence             368999999985 56777 5789999999999998876 56899999999999997 5899999999999999999987


Q ss_pred             EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358         1013 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1013 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      +..+.         |...|.  +++|+|.|+.+|++++.||+|++|+++..+.
T Consensus       305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            75432         455565  7889997789999999999999999986654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.1e-38  Score=344.46  Aligned_cols=288  Identities=16%  Similarity=0.245  Sum_probs=263.3

Q ss_pred             ecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358          392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      +.+|.+.|.+++|+|+    +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++.  ++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence            5689999999999985    67999999999999999987643 22336889999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ++||+.+++.+..+..|...+.+++|+  +++++|++++.||.|++|++++......+..+...+.+++|+|+|++|+++
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            999999999999999999999999995  477899999999999999999999988888888999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      +.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++++|++++.|++|++||+.+++....+..|.  ..|.+
T Consensus       183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~  253 (321)
T 3ow8_A          183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLN  253 (321)
T ss_dssp             ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEE
T ss_pred             cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEE
Confidence            86    5679999999999999999887   899999999999999999999999999999999998887654  46899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+                      |+++.+++++.|
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d  311 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD  311 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999996                      788899999999


Q ss_pred             cccceece
Q 001358          708 NKSEVEKP  715 (1092)
Q Consensus       708 ~~i~~w~~  715 (1092)
                      ++|++||.
T Consensus       312 ~~i~vwd~  319 (321)
T 3ow8_A          312 QEIHIYDC  319 (321)
T ss_dssp             CCEEEEEC
T ss_pred             CeEEEEeC
Confidence            99999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.8e-37  Score=338.81  Aligned_cols=295  Identities=18%  Similarity=0.310  Sum_probs=261.4

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ....++.+|.+.|++++|+|+|+ +|++|+.|+.|+||++.+++....                   +.+|...|.+++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~   73 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAW   73 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEE
T ss_pred             eeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEE
Confidence            45678899999999999999998 689999999999999999887654                   6789999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|++++|++++.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|+.|++||+.+++.+..+..|
T Consensus        74 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~  148 (312)
T 4ery_A           74 SSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAH  148 (312)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence            9999999999999999999999986554   6789999999999999999  8999999999999999999999999999


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ..+|.+++|++  ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++.    ++.|++||+.
T Consensus       149 ~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~  222 (312)
T 4ery_A          149 SDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYS  222 (312)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETT
T ss_pred             CCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence            99999999954  67899999999999999999888766554 45567999999999999999986    6679999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--  641 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--  641 (1092)
                      +++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|+++++++++  
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~  300 (312)
T 4ery_A          223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALE  300 (312)
T ss_dssp             TTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECT
T ss_pred             CCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEcc
Confidence            999999998887333334444455778899999999999999999999999988664  4689999999999999997  


Q ss_pred             CCCeEEEEECC
Q 001358          642 NENRIKILETP  652 (1092)
Q Consensus       642 ~dg~i~iw~~~  652 (1092)
                      .|+.|++|+..
T Consensus       301 ~d~~i~~W~~d  311 (312)
T 4ery_A          301 NDKTIKLWKSD  311 (312)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCccEEEecCC
Confidence            69999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.4e-38  Score=352.77  Aligned_cols=295  Identities=13%  Similarity=0.154  Sum_probs=239.2

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcC------cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ..+|+..|++++|||||+ +||+|+.      |++|++|+..++........               ...+|...|.+++
T Consensus        38 p~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~  101 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVA  101 (357)
T ss_dssp             --CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEE
T ss_pred             cccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEE
Confidence            357999999999999998 6889887      67899999888765432111               1446899999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCccc-eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++  +|++|+.|++|++||+.+++.+..+.
T Consensus       102 ~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~  178 (357)
T 4g56_B          102 WVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYN  178 (357)
T ss_dssp             EETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            99998655 567899999999998865432 224558999999999999999  89999999999999999999999999


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCC-CEEEEEecCCCCceeEEE
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~i  559 (1092)
                      +|...|++++|++..+ .++++++.||+|++||+++.+....+.  .+...+.+++|+|++ .++++++.    ++.|++
T Consensus       179 ~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~  253 (357)
T 4g56_B          179 AHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSL  253 (357)
T ss_dssp             CCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEE
T ss_pred             CCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeE
Confidence            9999999999976533 478999999999999999887765443  456679999999985 56777765    567999


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEE
Q 001358          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLL  637 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l  637 (1092)
                      ||+.+++.+..+.+|.   ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+.   +...|.+++|+| ++.+|
T Consensus       254 wd~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          254 VNIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             EESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEE
T ss_pred             EECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEE
Confidence            9999999999999888   899999999987 578899999999999999998877652   345799999998 89999


Q ss_pred             EEEeCCCeEEEEECCCC
Q 001358          638 AVIANENRIKILETPES  654 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~~~  654 (1092)
                      ++++.||+|++|++...
T Consensus       328 ~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          328 TTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEETTSCEEEEECC--
T ss_pred             EEEcCCCeEEEEECCCC
Confidence            99999999999999764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-37  Score=344.63  Aligned_cols=299  Identities=14%  Similarity=0.116  Sum_probs=239.2

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeeccccc-ceeEEeeecCCCCcEEEEEECCCCC
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~-~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      ..|...|.+++|||||+ +|++++ |+++++||...         .+|+..... ..-.......|...|.+++|+||+ 
T Consensus        27 ~~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-   94 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-   94 (344)
T ss_dssp             SSCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred             ccccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence            35667899999999998 677776 77888887321         111110000 000000122366789999999985 


Q ss_pred             EEEEEeCCCEEEEEEccCCCCccce-EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      +|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|||+  +|++|+.|++|++||+.+++++..+.+|...|
T Consensus        95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B           95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV  172 (344)
T ss_dssp             EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence            6889999999999999998876432 24568999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCCCC
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .+++|++.. ..+|++++.||+|++||+++.+....+.  .+...+.+++|+|++ +++++++.    ++.|++||++++
T Consensus       173 ~~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~  247 (344)
T 4gqb_B          173 TCVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKST  247 (344)
T ss_dssp             EEEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC-
T ss_pred             EEEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCC
Confidence            999997643 2588999999999999999988877664  345578999999965 56777765    678999999999


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANE  643 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~d  643 (1092)
                      +.+..+.+|.   ..|.+++|+|++ ++|++|+.|++|++||+.++++.. +..  +...|.+++|+|+++ +|++++.|
T Consensus       248 ~~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~--H~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          248 SCVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQA--HRDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             -CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECC--CSSCEEEEEECSSSTTEEEEEETT
T ss_pred             cEEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcC--CCCCEEEEEEeCCCCeEEEEEcCC
Confidence            9999999988   899999999998 578899999999999999987654 443  445799999999886 67789999


Q ss_pred             CeEEEEECCCC
Q 001358          644 NRIKILETPES  654 (1092)
Q Consensus       644 g~i~iw~~~~~  654 (1092)
                      ++|++|++.+.
T Consensus       322 ~~v~~w~v~~~  332 (344)
T 4gqb_B          322 HQVVHHVVPTE  332 (344)
T ss_dssp             SCEEEEECCC-
T ss_pred             CeEEEEECCCC
Confidence            99999999865

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.6e-38  Score=346.58  Aligned_cols=296  Identities=13%  Similarity=0.158  Sum_probs=227.6

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      +...|.+++|+|||+.+++++ |+.+++|+....               +|+................+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            566799999999999777665 778888874321               1111000000000000002567899999999


Q ss_pred             CCCEEEEEeCCeEEEEEcCCceeeEE----ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCC
Q 001358          813 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR  888 (1092)
Q Consensus       813 dg~~l~~~sdg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~  888 (1092)
                      ++.+++.+.||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            97655444489999999998876543    458999999999999 8999999999999999999999999999999999


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC-CCEEEE-EeCCcEEEEEcC
Q 001358          889 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE  965 (1092)
Q Consensus       889 V~~l~~spdg-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~v~lwd~~  965 (1092)
                      |++++|+|++ .+|++++.|++|++||+.+++....  +.. ..+.   ..+.+++|+|+ +++|++ +.|+.|++||+.
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            9999999998 4789999999999999998663321  111 1111   25889999995 567777 578999999999


Q ss_pred             CceeeeeeccCCCcCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001358          966 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus       966 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
                      +++++.. +.+|...|++++|+||| ++|++|+.|++|+|||+.++++.. +.        .|...|.  +++|+|++..
T Consensus       246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~  313 (344)
T 4gqb_B          246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS  313 (344)
T ss_dssp             C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred             CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence            9998887 56899999999999998 589999999999999999997653 22        2556666  7889997666


Q ss_pred             EEEEEeCCCcEEEEecCCC
Q 001358         1045 QFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1045 ~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      +|++++.||+|++|+++..
T Consensus       314 llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EEEEEETTSCEEEEECCC-
T ss_pred             EEEEEcCCCeEEEEECCCC
Confidence            7889999999999999754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-37  Score=355.32  Aligned_cols=340  Identities=13%  Similarity=0.176  Sum_probs=281.3

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEec----CCCCceeeeeeeeeecccccceeE-EeeecCCCCcEEEEEECC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~----~~~~~~~~~~~~~~d~~~~~~~~~-~~~l~~h~~~V~~l~~sp  406 (1092)
                      .|.+.|++++|+|+|+.+||+|+.|+.|+|||+    .+++.+...... ..+   ..++. .....+|...|.+++|+|
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~v~~~~~s~  118 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-AEL---RHPFALSASSGKTTNQVTCLAWSH  118 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-EEE---ECCCCCC------CBCEEEEEECT
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-ccc---cccccccccccCCCCceEEEEEcC
Confidence            455899999999999845899999999999999    888732110000 000   00000 001223788999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ++++|++++.|+.|++|| .+++.+   ..+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.+..+..+..
T Consensus       119 ~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             TSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             CCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence            999999999999999999 444433   36789999999999999999  899999999999999999999999988887


Q ss_pred             c---------------eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          487 P---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       487 ~---------------v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .               +.+++|++.   ..+++++.+|.|++||+........+..+...|.+++|+|++++|++++.  
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  267 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD--  267 (425)
T ss_dssp             -------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET--
T ss_pred             CccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC--
Confidence            7               888888653   46999999999999999999888888899999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        ++.|++||..+++.+..+.+|.   ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.  ..+.+++|+
T Consensus       268 --d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s  339 (425)
T 1r5m_A          268 --DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRIS  339 (425)
T ss_dssp             --TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEEC
T ss_pred             --CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEEc
Confidence              5669999999999999998877   899999999999 99999999999999999999998888654  468999999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCC--------------------eeeecccccc--cceeeeecCCcccccccccCCcee
Q 001358          632 KNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVS  689 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~  689 (1092)
                      |++++|++++.||.|++|++.++.                    .+..+..+..  .+.+++|+                
T Consensus       340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------  403 (425)
T 1r5m_A          340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----------------  403 (425)
T ss_dssp             TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------------
T ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------------
Confidence            999999999999999999999877                    7778888866  88888885                


Q ss_pred             ecCCCCCCcccceeeccccccceecee
Q 001358          690 VNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                            |+++++++++.|+.+++|++.
T Consensus       404 ------~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          404 ------CAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ------TTSSEEEEEESSSCCEEEECC
T ss_pred             ------CCCceEEEEecCceEEEEeec
Confidence                  788899999999999999964

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-36  Score=339.69  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=261.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|...|.+++|+||+++||+|+.|++|+|||..+++...   .+..|...|.+++|+|+|.  .+++|+.|+.+++|+
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP  134 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence            77899999999999999999999999999999998876444   5678999999999999999  899999999999999


Q ss_pred             CCCC------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec--CCCE
Q 001358          472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR  543 (1092)
Q Consensus       472 ~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~  543 (1092)
                      +...      .....+.+|...|.+++|++  ++..|++++.||+|++||+++++....+..|...|.+++++|  +|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            8654      34577889999999999965  567999999999999999999999999999999999999987  5789


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      +++++.    ++.|++||+++++.+..+.+|.   ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus       213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence            999986    6679999999999999998887   899999999999999999999999999999998887776655445


Q ss_pred             CCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccccee
Q 001358          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1092)
                      .+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+                      ||++++++
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s  343 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS  343 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence            67899999999999999999999999999999999999999999999996                      78999999


Q ss_pred             eccccccceec
Q 001358          704 VEAENKSEVEK  714 (1092)
Q Consensus       704 ~~~d~~i~~w~  714 (1092)
                      ++.|+++++|+
T Consensus       344 gs~D~~v~vW~  354 (354)
T 2pbi_B          344 GSWDHTLRVWA  354 (354)
T ss_dssp             EETTSEEEEEC
T ss_pred             EcCCCCEEecC
Confidence            99999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=337.41  Aligned_cols=296  Identities=17%  Similarity=0.195  Sum_probs=234.7

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeee-cC-CCCcEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRV  402 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~-h~~~V~~l  402 (1092)
                      .++++|.+|++.|++++|+|+   +||+|+.|++|+|||+.++.....                 ..+ .+ |...|.++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~-----------------~~~~~~~h~~~v~~v   64 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLI-----------------DVLDETAHKKAIRSV   64 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEE-----------------EEECTTCCCSCEEEE
T ss_pred             ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEE-----------------EEEecCCccCCEEEE
Confidence            467889999999999999998   689999999999999987642211                 013 34 99999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCC----CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC----
Q 001358          403 VWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----  474 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----  474 (1092)
                      +|+|++++||+|+.|++|+|||+....    .......+.+|...|.+++|+|+++  +|++|+.|++|++||+..    
T Consensus        65 ~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCC
Confidence            999999999999999999999996432    1233446889999999999999999  899999999999999943    


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEecC--CCEEEEEecC
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTS  550 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~  550 (1092)
                      .+++..+.+|...|.+++|+|  ++.+|++++.|++|++||....  .....+..|...|.+++|+|+  +.+|++++. 
T Consensus       143 ~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-  219 (330)
T 2hes_X          143 YECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD-  219 (330)
T ss_dssp             CEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET-
T ss_pred             eEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC-
Confidence            256788899999999999965  6689999999999999998765  456678889999999999999  678999886 


Q ss_pred             CCCceeEEEEeCCCC--------eEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEeCC
Q 001358          551 KEGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG  619 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~  619 (1092)
                         ++.|++||+.++        .....+.+ |.   ..|.+++|++++ .+++++.||.|++|+..+++.  .... ..
T Consensus       220 ---D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~  291 (330)
T 2hes_X          220 ---DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-AL  291 (330)
T ss_dssp             ---TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SC
T ss_pred             ---CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cc
Confidence               667999998765        33344443 44   889999999765 899999999999999988743  3222 12


Q ss_pred             CCCC-CCceEEEcc--CCCEEEEEeCCCeEEEEECCC
Q 001358          620 GGLP-ENPRICFNK--NGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       620 ~~~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      .+.. .|.+++|+|  ++++|++++.||.|++|++..
T Consensus       292 ~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          292 CHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            2333 689999999  789999999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.9e-37  Score=339.83  Aligned_cols=302  Identities=17%  Similarity=0.271  Sum_probs=245.0

Q ss_pred             cceeEecccCCCCceEEee-----cC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358          324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      ..+..+|.||++.|++++|     +| |++ +|++|+.|++|+|||+.+++....            .......+.+|..
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~   77 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNH   77 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSS
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCC
Confidence            3456789999999999999     77 887 799999999999999987543211            0011223789999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      .|.+++|+|++.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.. ..
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~  151 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-EC  151 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cc
Confidence            99999999999999999999999999999986554   6789999999999999999  899999999999999874 44


Q ss_pred             eEEEe---cCCcceEEEeecccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358          478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       478 ~~~~~---~~~~~v~~i~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                      .....   +|...|.+++|++...        +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence            43333   7889999999976532        268999999999999994 44556677889999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--EEeCC----
Q 001358          547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG----  619 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~----  619 (1092)
                      ++.    ++.|++||+.+ ......+. +.   ..|.+++|+|++.+++ ++.|+.|++||+.+++...  .+...    
T Consensus       231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence            986    67799999944 44444442 23   5799999999987765 4567889999998876543  33311    


Q ss_pred             -----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       620 -----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                           ++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                 34456889999999999999999999999997643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-36  Score=351.79  Aligned_cols=327  Identities=16%  Similarity=0.227  Sum_probs=269.4

Q ss_pred             CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEc----cCCCCcc---ceEEecc----------cccceeEEEeeCCCCc
Q 001358          394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCKQ  455 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~~---~~~~l~~----------h~~~v~~~~~s~d~~~  455 (1092)
                      .|...|.+++|+|+|+ +||+|+.|+.|++||+    .+++.+.   ....+..          |.+.|++++|+|+++ 
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  121 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-  121 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence            4678999999999999 9999999999999999    8876200   1112222          688999999999999 


Q ss_pred             EEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc----
Q 001358          456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----  531 (1092)
Q Consensus       456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----  531 (1092)
                       +|++++.|+.|++|| .+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+.+......+..+...    
T Consensus       122 -~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  197 (425)
T 1r5m_A          122 -SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI  197 (425)
T ss_dssp             -EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred             -EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence             899999999999999 78889999999999999999955  6789999999999999999998888877777666    


Q ss_pred             -----------eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001358          532 -----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       532 -----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg  600 (1092)
                                 +.+++|++++. +++++.    ++.|++||..+++.+..+..|.   ..|.+++|+|+++++++++.||
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~  269 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDDG  269 (425)
T ss_dssp             --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETTS
T ss_pred             eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCCC
Confidence                       88999999865 556554    6679999999998888888776   7888888888888888888888


Q ss_pred             eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358          601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                      .|++||+.+++.+..+.                                                               
T Consensus       270 ~i~i~d~~~~~~~~~~~---------------------------------------------------------------  286 (425)
T 1r5m_A          270 TLRIWHGGNGNSQNCFY---------------------------------------------------------------  286 (425)
T ss_dssp             CEEEECSSSBSCSEEEC---------------------------------------------------------------
T ss_pred             EEEEEECCCCccceEec---------------------------------------------------------------
Confidence            88888876542111110                                                               


Q ss_pred             ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  760 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l  760 (1092)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (425)
T 1r5m_A          287 --------------------------------------------------------------------------------  286 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe
Q 001358          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI  839 (1092)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~  839 (1092)
                                                             .|...+.+++|+|++ ++++++ ++.|++||+.+++.+..+
T Consensus       287 ---------------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  326 (425)
T 1r5m_A          287 ---------------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS  326 (425)
T ss_dssp             ---------------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ---------------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence                                                   144556677777777 666665 688888888888888888


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce--------------------eeEeeccccC--CeEEEEEcCC
Q 001358          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDA  897 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spd  897 (1092)
                      ..|...+.+++|+| ++++|++++.||.|++||+.+++                    .+..+.+|..  .|++++|+|+
T Consensus       327 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  405 (425)
T 1r5m_A          327 IVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA  405 (425)
T ss_dssp             ECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred             ccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence            88999999999999 89999999999999999999988                    8899999977  9999999999


Q ss_pred             CCEEEEEeCCCcEEEEEcCC
Q 001358          898 LNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       898 g~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      +++|++++.||.|++|+++.
T Consensus       406 ~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          406 GNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             SSEEEEEESSSCCEEEECCC
T ss_pred             CceEEEEecCceEEEEeecC
Confidence            99999999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2e-36  Score=344.02  Aligned_cols=303  Identities=15%  Similarity=0.231  Sum_probs=247.5

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      +|++.|++++|||||+ +||+|+ +++++||++.+|+.+.......-.. .....+.......+...|.+++|+|||++|
T Consensus        62 ~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l  138 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL  138 (393)
T ss_dssp             ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence            6999999999999998 688876 6899999999998776422100000 000000011112344469999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      |+|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  .|++++.|++|++||+.++++...+. +...+.++
T Consensus       139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence            999999999999999886444   6889999999999999999  89999999999999999999888876 56778999


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ++++. ++.+|++++.||.|++||++++.....+       ..|...|.+++|+|+|++|++++.    ++.|++||+.+
T Consensus       213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~  287 (393)
T 1erj_A          213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN  287 (393)
T ss_dssp             EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred             EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence            98653 6789999999999999999988766655       467789999999999999999986    67799999875


Q ss_pred             C------------eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          565 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       565 ~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      .            .+...+.+|.   ..|.+++|+|++.++++|+.|+.|++||..+++.+..+..|.  ..|.+++|++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~  362 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN  362 (393)
T ss_dssp             -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred             CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence            3            3455677776   889999999999999999999999999999999999888764  4689999886


Q ss_pred             ------CCCEEEEEeCCCeEEEEECCC
Q 001358          633 ------NGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       633 ------~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                            ++++|++++.||.|++|+...
T Consensus       363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          363 GSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CcCcCCCCCEEEEECCCCcEEECcccc
Confidence                  688999999999999999764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.8e-36  Score=331.15  Aligned_cols=268  Identities=19%  Similarity=0.254  Sum_probs=241.6

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+|||++||+++.||+|++||+.++..+.   .+..|..+|.+++|+|+++  +|++|+.|++|++||
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence            77899999999999999999999999999999999986554   6788999999999999999  899999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEec-CCCEEEEEec
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1092)
                      +.+++.+..+.+|...|.+++|++  ++.+|++|+.||+|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            999999999999999999999965  668999999999999999988744 457788999999999999 6789999986


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                          ++.|++||+.++.....+..+.  ...+..+.|+|  ++.++++|+.|++|++||+.+++++..+..|.  ..|.+
T Consensus       162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~  233 (304)
T 2ynn_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (304)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence                6779999998887766665433  36788999986  67899999999999999999999999998764  46899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecC
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP  674 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~  674 (1092)
                      ++|+|++++|++++.||.|++||..+++....+..+...+.++++.|
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            99999999999999999999999999999999999999999999874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.5e-35  Score=380.20  Aligned_cols=523  Identities=13%  Similarity=0.065  Sum_probs=378.0

Q ss_pred             CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      +...+.+++|||+  + ||.++. +.|++|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            3557899999964  3 455444 789999999887543                    667999999999999999999


Q ss_pred             EEeCC------CEEEEEEccCCCCccceEEecccccce-------eEEEeeCCCCcEEEEEEeCC------CcEEEEECC
Q 001358          413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV  473 (1092)
Q Consensus       413 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~  473 (1092)
                      +++.+      ..|++||+.+++.    ..+..|...+       ..++|+|||+  ++++++.+      ..|.+||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88643      3799999988752    2577888888       9999999998  67777754      458888887


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCceEEEEEecCC
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1092)
                      +++... +..+  ....++|++   | ++++++.            +...++|..........+..+...+.++.|+++ 
T Consensus       143 ~g~~~~-l~~~--~~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-  214 (1045)
T 1k32_A          143 GINFVP-LNLG--PATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-  214 (1045)
T ss_dssp             GTEEEE-CCSC--SCSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred             CCCeEE-ecCC--CcceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence            776543 3323  234556754   5 7887753            345677755444555566788889999999988 


Q ss_pred             CEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358          542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      ..++++..    ++.+.+|.... +.....+..+.    .+...+|+|+|++++.+. ++.|++|++.... +..+..+.
T Consensus       215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~  284 (1045)
T 1k32_A          215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD  284 (1045)
T ss_dssp             EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred             EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence            44444432    33455565432 33334444443    356679999999988874 8999999995444 33444321


Q ss_pred             ---------CCCCCceEEEc-cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceee
Q 001358          621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1092)
Q Consensus       621 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  690 (1092)
                               +...+..++|+ |||+++++++ ++.+.+|+...+.... +.                             
T Consensus       285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-----------------------------  333 (1045)
T 1k32_A          285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-----------------------------  333 (1045)
T ss_dssp             CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred             ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence                     11247899999 9999999888 7899999877553221 10                             


Q ss_pred             cCCCCCCcccceeeccccccceeceeeccCccceecccCCccccc-cEEEEEEecCCcEEEEeecCCeeE-EeeecCCcc
Q 001358          691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL  768 (1092)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~i~-lw~~~~~~~  768 (1092)
                                                               .+.. .+..++|+ +|+.++.++.++.+. +|++..   
T Consensus       334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~---  368 (1045)
T 1k32_A          334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT---  368 (1045)
T ss_dssp             -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---
T ss_pred             -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---
Confidence                                                     0233 57788899 999888888766666 666432   


Q ss_pred             ccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeE
Q 001358          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT  847 (1092)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~  847 (1092)
                                         +. ...  +.  ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus       369 -------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          369 -------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             -------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             -------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                               22 111  11  2667899999999999999988 58999999999998888878889999


Q ss_pred             EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358          848 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      +++||| |+++|++++.++          .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus       425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            999999 899998887654          99999999887 677888988999999999999999999988888887543


Q ss_pred             Cceeee-----eeeec-----------------------CCC-------CcCCCCCceEEEEecCCCEEEE---------
Q 001358          918 WGIQTC-----RSLQT-----------------------PDG-------VMTLAPSETHIQFHKDQTRFLL---------  953 (1092)
Q Consensus       918 ~~~~~~-----~~~~~-----------------------~~~-------~~~~~~~v~~l~~s~dg~~la~---------  953 (1092)
                      ......     ..+..                       ..+       .....+.+..++|+|||+++++         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            321000     00000                       000       0011235789999999997775         


Q ss_pred             ---E--eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358          954 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       954 ---~--~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                         +  ....|.+||+.+++.... .    ..+.+++|||||++|++++.| .|++||+.+++
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence               1  234688999988875432 2    568899999999999999866 89999998887

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.1e-36  Score=334.01  Aligned_cols=324  Identities=13%  Similarity=0.163  Sum_probs=272.6

Q ss_pred             CCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       333 h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      |.+.|.+++|||||+ +++++..++.+.+|+........                   ...+|...|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence            456899999999998 57777766666666544322221                   1447999999999999999999


Q ss_pred             EEeCCCEEEEEEccCCCCccceEEec--ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc--eeEEEecCCcce
Q 001358          413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV  488 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v  488 (1092)
                      +++ |+.|++||+.+++.......+.  +|...|.+++|+|+++  ++++++.|+.|++||+.+++  ....+..|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            998 9999999999887655544444  7999999999999999  89999999999999999887  667788999999


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      .+++|++  ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.    ++.|++||+.+++.+
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL  218 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence            9999965  6789999999999999999998888888889999999999999999999986    667999999999988


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ..+.. .   ..+.+++|+|+++++++++.++.|++||+.+++... +..  +...+.+++|+|+++++++++.||.|++
T Consensus       219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL--HESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcC--CccceeEEEECCCCCEEEEecCCCcEEE
Confidence            77753 3   689999999999999999999999999999887653 333  3456899999999999999999999999


Q ss_pred             EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1092)
                      |++.+++.+...                                                                    
T Consensus       292 ~~~~~~~~~~~~--------------------------------------------------------------------  303 (337)
T 1gxr_A          292 WRTPYGASIFQS--------------------------------------------------------------------  303 (337)
T ss_dssp             EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred             EECCCCeEEEEe--------------------------------------------------------------------
Confidence            999876543211                                                                    


Q ss_pred             CCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       729 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                         .+...+.+++|+|+++.+++++.||.+++|++
T Consensus       304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence               14556788888899988888888999998885

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.9e-37  Score=349.14  Aligned_cols=290  Identities=15%  Similarity=0.167  Sum_probs=255.8

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.+++|+|+|++||+|+.|++|+|||+.+++...   .+.+|...|.+++|+|+|+  +|++|+.|+.|++||
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~  136 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN  136 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence            78999999999999999999999999999999999886544   6789999999999999999  899999999999999


Q ss_pred             CCCCc-------eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEec
Q 001358          472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA  539 (1092)
Q Consensus       472 ~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~s~  539 (1092)
                      +.+..       ....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+     ..|...|.++++++
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            87532       345678999999999997653 357999999999999999998887766     56778899999987


Q ss_pred             -CCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       540 -dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                       +++++++++.    ++.|++||++ .+..+..+.+|.   ..|.+++|+|+++++++|+.||+|++||+.++..+..+.
T Consensus       216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence             8899999986    6679999997 567788888888   899999999999999999999999999999999988876


Q ss_pred             CCCC-----CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeec----ccccccceeeeecCCcccccccccCCce
Q 001358          618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1092)
Q Consensus       618 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~  688 (1092)
                      .+..     ...+.+++|+|+|+++++|+.||.|++||...++.+..+    .+|...|.+++++               
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---------------  353 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---------------  353 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence            5422     234889999999999999999999999999988877665    6788899999886               


Q ss_pred             eecCCCCCCcccceeeccccccceecee
Q 001358          689 SVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                             |||+++++++.|+++++|++.
T Consensus       354 -------~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          354 -------SDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -------SSSSEEEEECTTSCEEEEECC
T ss_pred             -------CCCCEEEEeeCCCCEEEEecC
Confidence                   789999999999999999976

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.1e-36  Score=333.93  Aligned_cols=303  Identities=18%  Similarity=0.262  Sum_probs=260.6

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+..+|+||++.|++|+|+|++..+||||+.|++|+|||+.+++.....              ....+.+|...|.+++|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI   94 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence            4456899999999999999985348999999999999999887654321              12237899999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEec
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG  483 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~  483 (1092)
                      +|||++|++++.|+.|++|+...+....   ....+...+..+.+++++.  .+++++.|+.+++||....... ....+
T Consensus        95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~  169 (340)
T 4aow_A           95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES  169 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred             CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence            9999999999999999999998875443   5567888899999999999  7999999999999998766543 44578


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |...+..++|.+.+...++++++.|+.|++||+.+......+..|...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~  245 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN  245 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence            999999999988877789999999999999999999999999999999999999999999999986    6779999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-------CCCCCCceEEEccCCCE
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL  636 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~  636 (1092)
                      +++.+..+..+    ..+.+++|+|++ .+++++.|+.|++||++++..+..+..+       .+...|.+++|+|+|++
T Consensus       246 ~~~~~~~~~~~----~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          246 EGKHLYTLDGG----DIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             TTEEEEEEECS----SCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             cCceeeeecCC----ceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence            99999888764    479999999986 4666778999999999998887766532       34557899999999999


Q ss_pred             EEEEeCCCeEEEEECCCCC
Q 001358          637 LAVIANENRIKILETPESN  655 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~  655 (1092)
                      |++|+.||.|+||++.+|.
T Consensus       321 l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          321 LFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEETTSCEEEEEEEC--
T ss_pred             EEEEeCCCEEEEEeCCCcC
Confidence            9999999999999998763

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-35  Score=326.07  Aligned_cols=297  Identities=21%  Similarity=0.275  Sum_probs=253.0

Q ss_pred             eecCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEEccCCCCc--cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358          391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      .+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+....  .....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            488999999999999965 89999999999999999754321  23446889999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecC------C
Q 001358          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G  541 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~d------g  541 (1092)
                      ++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||++. .....+..|...+.++.++|.      +
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            9999999999999999999999999955  668999999999999999964 566677889999999999985      4


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      ..+++++.    ++.|++||+.+++....+.+|.   ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+  
T Consensus       167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  237 (319)
T 3frx_A          167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--  237 (319)
T ss_dssp             CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred             cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence            47888876    6679999999999999999888   89999999999999999999999999999999999888765  


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                       ..+.+++|+|++.++++++.+ .+++|++.....+..+..+...                                   
T Consensus       238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~-----------------------------------  280 (319)
T 3frx_A          238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG-----------------------------------  280 (319)
T ss_dssp             -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred             -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence             358999999999999988765 5999998865444333211000                                   


Q ss_pred             eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecC
Q 001358          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~  765 (1092)
                                                 ....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus       281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence                                       0012456788999999999999999999999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-37  Score=355.87  Aligned_cols=353  Identities=13%  Similarity=0.186  Sum_probs=274.4

Q ss_pred             CCceEEeecCCCceEEEEE----------cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg----------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..|.+++|+|+|+.++|+|          +.|+.|+|||+.++......                 ....|...|.+++|
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~v~~~~~   75 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI-----------------ASLQVDSKFNDLDW   75 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS-----------------CCCCCSSCEEEEEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE-----------------EEEecCCceEEEEE
Confidence            4799999999997689999          88999999999987633110                 02358899999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCC-ccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCc------
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------  476 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~------  476 (1092)
                      +|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++  +|++++.|+.|++||+.+++      
T Consensus        76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred             CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence            99999999999999999999987211 1234467899999999999999 66  79999999999999999887      


Q ss_pred             eeE---EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEecCC-CEEEE
Q 001358          477 RTY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS  546 (1092)
Q Consensus       477 ~~~---~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg-~~l~~  546 (1092)
                      ...   .+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+..+      ...+.+++|+|++ .++++
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence            333   34679999999999764 2579999999999999999998888877776      6789999999998 57777


Q ss_pred             EecCCCCceeEEEEeCCCC-eEEEEEe-eccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCC
Q 001358          547 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      ++.++ .++.|++||+.++ ..+..+. +|.   ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+.  .
T Consensus       233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~  306 (416)
T 2pm9_A          233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--N  306 (416)
T ss_dssp             EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--S
T ss_pred             EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--C
Confidence            76532 1237999999986 6667776 676   8999999999 89999999999999999999999999988664  4


Q ss_pred             CCceEEEccCC-CEEEEEeCCCeEEEEECCCCCeeeeccc--ccccceeeeecCCccccc---------------ccccC
Q 001358          624 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIAN  685 (1092)
Q Consensus       624 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---------------~~~~~  685 (1092)
                      .|.+++|+|++ .++++++.|+.|++|++.+.........  .........+.+.....+               .....
T Consensus       307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (416)
T 2pm9_A          307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS  386 (416)
T ss_dssp             CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred             ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence            68999999998 8999999999999999987754332211  000000001111000000               00111


Q ss_pred             CceeecCCCCCCcccceeeccccccceeceee
Q 001358          686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       686 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1092)
                      ..++|    +|||+++++++.|+.|++|++.+
T Consensus       387 ~~~~~----s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          387 PAAHW----AFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             CCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence            13344    78999999999999999999763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.2e-36  Score=334.71  Aligned_cols=301  Identities=17%  Similarity=0.206  Sum_probs=239.8

Q ss_pred             cccc-cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358          732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       732 ~~~~-~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      +|.. .|..++|+|+|+.|++++.|+.|++|++.....                      .....+ ..+|...|.+++|
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~   69 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW   69 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence            3666 899999999999999999999999999764321                      000001 1248999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEEcCCc--eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeeEeecc
Q 001358          811 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG  884 (1092)
Q Consensus       811 s~dg~~l~~~s-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~  884 (1092)
                      +|++++|++++ |+++++||..++  +.+..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++   +++..+.+
T Consensus        70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  148 (345)
T 3fm0_A           70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS  148 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred             CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence            99999999998 799999999866  46788999999999999999 8999999999999999999876   45677889


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEE
Q 001358          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE  963 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd  963 (1092)
                      |...|.+++|+|++++|++++.|++|++||+..++.   .+.....+|..   .|.+++|+|+|++|++ +.|++|++||
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            999999999999999999999999999999987542   23344556554   7999999999999999 6889999999


Q ss_pred             cCCc---------------eeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE--eeccccccCCCC
Q 001358          964 AEEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC--RILSTAYLRPTT 1026 (1092)
Q Consensus       964 ~~~~---------------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~--~~~~~~~~~~~~ 1026 (1092)
                      ....               +++..+...|...|.+++|+|++..|++++.|+.|++|+...+....  .+....... ..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~~  301 (345)
T 3fm0_A          223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH-QA  301 (345)
T ss_dssp             EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET-TS
T ss_pred             cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec-cc
Confidence            6321               23334344489999999999999999999999999999988653210  010000111 12


Q ss_pred             ccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001358         1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1027 ~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      |...|.  +++|+|+++.+||+|+.||+|++|++...+.
T Consensus       302 h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          302 HSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             SSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             ccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            455555  7899996557999999999999999976664

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.4e-35  Score=324.42  Aligned_cols=291  Identities=20%  Similarity=0.287  Sum_probs=260.3

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .+.+|...|.+++|+|+|++||+++.|+.|++|++.+++...   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw   92 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW   92 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence            378999999999999999999999999999999999886544   6789999999999999999  89999999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      |+.+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+++.+....+..+..+|.+++|+|+++++++++. 
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  169 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  169 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence            9999999999999999999999965  6689999999999999999999988899999999999999999999999986 


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                         ++.|++||+.+++.+..+....  ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus       170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence               5679999999998887765443  46799999999999999999999999999999999998877654333334444


Q ss_pred             c-cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec--cc
Q 001358          631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE  707 (1092)
Q Consensus       631 s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d  707 (1092)
                      + +++.++++++.||.|++||+.+++.+..+.+|...+.+++++                      |+++.+++++  .|
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d  302 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND  302 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence            4 678999999999999999999999999999999999999996                      6777888876  68


Q ss_pred             cccceecee
Q 001358          708 NKSEVEKPL  716 (1092)
Q Consensus       708 ~~i~~w~~~  716 (1092)
                      ++|++|+.+
T Consensus       303 ~~i~~W~~d  311 (312)
T 4ery_A          303 KTIKLWKSD  311 (312)
T ss_dssp             CCEEEEECC
T ss_pred             ccEEEecCC
Confidence            999999854

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-35  Score=323.42  Aligned_cols=306  Identities=15%  Similarity=0.182  Sum_probs=232.9

Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceEEEEeCCCCCCCCceEEEccCCCEEEEEe
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~  641 (1092)
                      +.+.+..+.+|.   ..|.+++|+|+  +|++|+.|++|++||+.++  .....+....+...|.+++|+|++++|++++
T Consensus         3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            456677888888   89999999987  8999999999999999875  3445553322456799999999999999999


Q ss_pred             CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCc
Q 001358          642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS  721 (1092)
Q Consensus       642 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~  721 (1092)
                      .|+.|++|+........                                                               
T Consensus        78 ~D~~v~iw~~~~~~~~~---------------------------------------------------------------   94 (330)
T 2hes_X           78 FDSTVSIWAKEESADRT---------------------------------------------------------------   94 (330)
T ss_dssp             TTSCEEEEEC----------------------------------------------------------------------
T ss_pred             CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence            99999999975321000                                                               


Q ss_pred             cceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCC
Q 001358          722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS  801 (1092)
Q Consensus       722 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  801 (1092)
                                 .           ..+ .                                         ...  +  .+|
T Consensus        95 -----------~-----------~~~-~-----------------------------------------~~~--~--~~h  106 (330)
T 2hes_X           95 -----------F-----------EMD-L-----------------------------------------LAI--I--EGH  106 (330)
T ss_dssp             -----------C-----------CCE-E-----------------------------------------EEE--E--C--
T ss_pred             -----------c-----------cce-e-----------------------------------------EEE--E--cCC
Confidence                       0           000 0                                         000  0  037


Q ss_pred             CCCeeEEEEecCCCEEEEEe-CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358          802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      ...|.+++|+|++++|++++ |++|++||+..    .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus       107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence            77888888888888888887 78899998842    356778899999999999999 8999999999999999999876


Q ss_pred             --eeeEeeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEEcCCCce---eeeeeeecCCC-CcCCCCCceEEEEecCC
Q 001358          877 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       877 --~~~~~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~l~~s~dg  948 (1092)
                        +++..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+..   ..........+ |.   ..|.+++|++++
T Consensus       186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~  262 (330)
T 2hes_X          186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG  262 (330)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred             CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence              678899999999999999999  77999999999999999975421   11123333333 33   379999999877


Q ss_pred             CEEEEEeCCcEEEEEcCCce--eeeeeccCCCc-CEEEEEEec--CCCEEEEEeCCCcEEEEECCC
Q 001358          949 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       949 ~~la~~~d~~v~lwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
                      .++..+.|+.|++||..+++  .......+|.. .|.+++|+|  |+++|++|+.||+|++|++..
T Consensus       263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            54444789999999998774  34444467876 899999999  789999999999999999875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.9e-35  Score=333.39  Aligned_cols=290  Identities=17%  Similarity=0.228  Sum_probs=248.4

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccc------------------cceeEEEeeCCCCc
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ  455 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~v~~~~~s~d~~~  455 (1092)
                      +|...|.+++|||||++||+|+ ++.+++|++.+++.+.   .+..|.                  ..|.+++|+|||+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            5999999999999999999986 6789999999987554   343332                  2499999999999 


Q ss_pred             EEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001358          456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       456 l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                       +|++|+.|++|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence             899999999999999999999999999999999999965  66899999999999999999887766665 44578999


Q ss_pred             EEec-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEE-------eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       536 ~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      +|+| +++++++++.    ++.|++||..++..+..+       .+|.   ..|.+++|+|+++++++|+.|++|++||+
T Consensus       213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9999 8999999986    566999999999888776       3444   89999999999999999999999999999


Q ss_pred             CCCc------------eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCC
Q 001358          608 NKVQ------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       608 ~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      .+..            +...+..|  ...|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~  363 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG  363 (393)
T ss_dssp             ---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred             CCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence            7643            33444444  446899999999999999999999999999999999999999999999999864


Q ss_pred             cccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1092)
                      ...                +|+++.+++++.|+++++|++..
T Consensus       364 ~~~----------------~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          364 SSL----------------GPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             CTT----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred             cCc----------------CCCCCEEEEECCCCcEEECcccc
Confidence            322                57899999999999999999763

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=6.9e-34  Score=364.66  Aligned_cols=529  Identities=10%  Similarity=0.019  Sum_probs=372.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC------CCcEE
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK  468 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~  468 (1092)
                      +...+.+.+|||  +.||.++. +.|++|++.+++..    .+.+|...+.+++|||||+  .|++++.      +..|+
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~   83 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY   83 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence            456789999995  58888876 68999999987532    4678999999999999999  5665543      34799


Q ss_pred             EEECCCCceeEEEecCCcce-------EEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEE
Q 001358          469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v-------~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                      +||+.+++ ...+..|...+       ..++|++  ||+++++++.+      ..|..|++..+....... .  ....+
T Consensus        84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~--~~~~~  157 (1045)
T 1k32_A           84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL-G--PATHI  157 (1045)
T ss_dssp             EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS-C--SCSEE
T ss_pred             EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecC-C--Cccee
Confidence            99998876 56788888888       8888855  66677777754      357777776654433222 2  23457


Q ss_pred             EEecCCCEEEEEecCCC--------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      +|+| | .+++++...+        +.....+|....+.....+.+|.   ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus       158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~  231 (1045)
T 1k32_A          158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST  231 (1045)
T ss_dssp             EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred             eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence            7999 8 7777643211        12234455432223445556666   88999999998 56667788899999976


Q ss_pred             CC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCC
Q 001358          608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      .. +.....+..+.   .+...+|+|||++++.+. ++.|++|+.... .+..+..+....                   
T Consensus       232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~-------------------  287 (1045)
T 1k32_A          232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES-------------------  287 (1045)
T ss_dssp             ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB-------------------
T ss_pred             eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc-------------------
Confidence            53 33444444332   367789999999998884 789999998432 222222100000                   


Q ss_pred             ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEe-cCCcEEEEeecCCeeEEeeecC
Q 001358          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR  765 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~lw~~~~  765 (1092)
                                            .. .|                 ..+...+..++|+ |||+.+++++ ++.+.+|+...
T Consensus       288 ----------------------~~-~~-----------------~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          288 ----------------------PE-DR-----------------IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             ----------------------CC-SE-----------------EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             ----------------------cc-cc-----------------cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence                                  00 00                 0144567789999 9999888877 77888876543


Q ss_pred             CccccCcccccccCCccccCCCCCceeeecCCCCCCCC-CeeEEEEecCCCEEEEEeC-CeEE-EEEcCCceeeEEecCC
Q 001358          766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP  842 (1092)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~v~~~~~s~dg~~l~~~sd-g~i~-iwd~~~~~~~~~~~~~  842 (1092)
                      .                      . ...  +.  .+.. .+..++|+ ||+.++++++ +.+. +|++.+++.. .+.+|
T Consensus       327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~  377 (1045)
T 1k32_A          327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN  377 (1045)
T ss_dssp             S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence            2                      1 111  11  2555 78899999 9999999885 6688 8899877654 34477


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC----------cEEE
Q 001358          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV  912 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg----------~i~i  912 (1092)
                      ...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++
T Consensus       378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            78999999999 899999999999999999999998888878999999999999999999887654          8999


Q ss_pred             EEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCcee----------------------
Q 001358          913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC----------------------  969 (1092)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~----------------------  969 (1092)
                      ||+.+++.      .....+..   .+..++|+|||++|+. +.++...+|+......                      
T Consensus       457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (1045)
T 1k32_A          457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  527 (1045)
T ss_dssp             EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence            99998641      11222222   4778999999999988 4445555554322111                      


Q ss_pred             --------------------eeeeccCCCcCEEEEEEecCCCEEEE-------------EeCCCcEEEEECCCCceEEee
Q 001358          970 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       970 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~t-------------~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                                          ....+..|.+.+..++|+|||+++++             ...+..|.+||+.+++.....
T Consensus       528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  607 (1045)
T 1k32_A          528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK  607 (1045)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred             cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence                                01112346678999999999987875             123457888999988754222


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358         1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .            .+  ..++++| |+.+|++++.+ .|++||+....
T Consensus       608 ~------------~v--~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          608 N------------NL--TDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             E------------EE--EEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             c------------Cc--ceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            1            12  3678999 58999988766 89999996544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-35  Score=342.36  Aligned_cols=346  Identities=13%  Similarity=0.120  Sum_probs=284.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      .+++++|+|+|++|++++.|+.|++||+.+++...   .+..| ..+....|+++++  +|++|+.|+.|++||+.+++.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence            35578999999999999999999999999876655   33445 4455668899999  899999999999999999999


Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ...+.+|...|.+++|++  ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++.    ++.|
T Consensus       132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v  205 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI  205 (420)
T ss_dssp             EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred             eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence            988889999999999965  6689999999999999999999999999999999999999999999999986    5669


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE
Q 001358          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l  637 (1092)
                      ++||+.+++.+..+..+..+...+.++++.|.+...+                     ..  .+...+.+++|+|+++++
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCEE
Confidence            9999999999999998766668899998887653220                     01  112457889999999999


Q ss_pred             EEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358          638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1092)
                      ++++.||.|++||+.+++....+.                                                        
T Consensus       263 ~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------------------------------  286 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKEQTIQLP--------------------------------------------------------  286 (420)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence            999999999999987543221100                                                        


Q ss_pred             ccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC
Q 001358          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1092)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  797 (1092)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (420)
T 3vl1_A          287 --------------------------------------------------------------------------------  286 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEEecCCC-EEEEEe-CCeEEEEEcCCcee-eEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001358          798 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1092)
Q Consensus       798 ~~~~~~~v~~~~~s~dg~-~l~~~s-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1092)
                       ..|...+.+++|+|+++ ++++++ ||.|++||+.+++. +..+.. |...+.++.+.  ++++|++++.||.|++|++
T Consensus       287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred             -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence             02566788888888888 888877 68899999887754 566665 56677888654  5779999999999999999


Q ss_pred             CCc---------eeeEeeccccCCeEEEEEcCCCC---EEEEEeCCCcEEEEEcCC
Q 001358          874 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       874 ~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~s~Dg~i~iwd~~~  917 (1092)
                      .+.         .....+.+|.+.|.+++|+|+++   .+++++.+|.+.+|+++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            873         22334567899999999999999   788888899999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-36  Score=346.04  Aligned_cols=382  Identities=13%  Similarity=0.146  Sum_probs=287.4

Q ss_pred             eecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeee-cCCCCcEEEEEECC-CCCEEEEEeCCC
Q 001358          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYSKH  418 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~las~~~d~  418 (1092)
                      .|+|+++ .+++++      .|+ .+++.+..                   + .+|.+.|.+++|+| ++++||+|+.||
T Consensus        34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg   86 (437)
T 3gre_A           34 EFGPIQE-IVRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSDQG   86 (437)
T ss_dssp             GGCCCCC-CCCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEETTS
T ss_pred             hcCCccc-cccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecCCc
Confidence            5789998 455544      377 44555543                   4 78999999999999 999999999999


Q ss_pred             EEEEEEccC---CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcceEEEe
Q 001358          419 IVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       419 ~i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~  492 (1092)
                      +|+|||+.+   +........+ +|...|.+++|+|+++  +|++|+.|++|++||++   +++.+..+.+|  .+..+.
T Consensus        87 ~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~  161 (437)
T 3gre_A           87 VIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKIN  161 (437)
T ss_dssp             EEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEE
T ss_pred             eEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEE
Confidence            999999987   5534333333 5999999999999999  89999999999999994   77877777766  677777


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE--EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~--~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      +.+.+                              +...+.++.  +++++.++++++.    ++.|++||+.+++.+..
T Consensus       162 ~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          162 LKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             GGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEE
T ss_pred             ccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEE
Confidence            65431                              112334444  6789999999986    66799999999999999


Q ss_pred             Eee--ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc----cCCCEEEEEeCCC
Q 001358          571 YQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANEN  644 (1092)
Q Consensus       571 ~~~--~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg  644 (1092)
                      +.+  |.   ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+    |++.++++++.||
T Consensus       208 ~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          208 IENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             EECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             EccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCC
Confidence            998  55   8999999999999999999999999999999999988864322 368899665    4688999999999


Q ss_pred             eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1092)
                      .|++||+.+++.+..+.++...+..+.++|.+                      +.+                       
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~l-----------------------  318 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE----------------------KGL-----------------------  318 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCBC----------------------SSG-----------------------
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceecccc----------------------ccc-----------------------
Confidence            99999999998888777766655544444221                      111                       


Q ss_pred             ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001358          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  804 (1092)
                                                   .+.                                      .+.+..|...
T Consensus       319 -----------------------------~~~--------------------------------------~~~~~~~~~~  331 (437)
T 3gre_A          319 -----------------------------EEL--------------------------------------NFCGIRSLNA  331 (437)
T ss_dssp             -----------------------------GGC--------------------------------------CCCCCCSGGG
T ss_pred             -----------------------------ccc--------------------------------------eecccccCCc
Confidence                                         000                                      0000127788


Q ss_pred             eeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC---CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358          805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1092)
                      |.+++|+ ++++|++++ |+.|++||+.+++....+.+|..   .+....+++ ...+++..        |+...+....
T Consensus       332 v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~  401 (437)
T 3gre_A          332 LSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVD  401 (437)
T ss_dssp             GCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC--------
T ss_pred             eEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccC
Confidence            9999999 778899887 79999999999999988887643   456666776 55454443        3344455556


Q ss_pred             eeccccCCeEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001358          881 KLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~i~iwd  914 (1092)
                      ....|.+.|++++|+++  +.+|++++.||.|+||+
T Consensus       402 ~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          402 DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            66779999999999998  78999999999999995

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-34  Score=321.91  Aligned_cols=322  Identities=14%  Similarity=0.136  Sum_probs=267.1

Q ss_pred             ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC
Q 001358          439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1092)
Q Consensus       439 ~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~  518 (1092)
                      .|.++|.+++|+|||+  .++++..++.+.+|+...........+|...|.+++|++  +++++++++ ||.|++||+.+
T Consensus         7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred             ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence            3667899999999999  787777777777776665555555558999999999954  778999998 99999999987


Q ss_pred             CCceE---Eec--CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCC
Q 001358          519 LGARV---DYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       519 ~~~~~---~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1092)
                      .....   .+.  .+...+.+++|+|+++++++++.    ++.|++||..+++  ....+..|.   ..+.+++|+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~  154 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK  154 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred             CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence            65322   222  67889999999999999999876    6679999999887  556666666   8899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeee
Q 001358          592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~  671 (1092)
                      ++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++++++++.||.|++||+.+++.....           
T Consensus       155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----------  221 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-----------  221 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence            99999999999999999999988887653  46899999999999999999999999998754221110           


Q ss_pred             ecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEE
Q 001358          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  751 (1092)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~  751 (1092)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (337)
T 1gxr_A          222 --------------------------------------------------------------------------------  221 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEc
Q 001358          752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV  830 (1092)
Q Consensus       752 ~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~  830 (1092)
                                                                      .+...+.+++|+|+++++++++ ++.|++||+
T Consensus       222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~  253 (337)
T 1gxr_A          222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence                                                            0334566778888888888777 578888888


Q ss_pred             CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcE
Q 001358          831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI  910 (1092)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i  910 (1092)
                      .+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus       254 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i  330 (337)
T 1gxr_A          254 NKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             TSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             CCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence            77665 45677899999999999 8999999999999999999999877554 488999999999999999999999999


Q ss_pred             EEEEcC
Q 001358          911 FVWDVD  916 (1092)
Q Consensus       911 ~iwd~~  916 (1092)
                      ++|++.
T Consensus       331 ~iw~~~  336 (337)
T 1gxr_A          331 TVYEVI  336 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999973

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-35  Score=342.43  Aligned_cols=350  Identities=12%  Similarity=0.113  Sum_probs=283.7

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      +.+++++|+|+|+ +|++|+.|+.|++||+.+++....                   +..| ..+...+|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence            3456899999999 589999999999999998765542                   3344 455566889999999999


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~  494 (1092)
                      +.|+.|++||+.+++...   .+.+|.+.|.+++|+|+++  +|++++.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999875443   5679999999999999999  89999999999999999999999999999999999996


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      +  ++.+|++++.||.|++||+++.+....+..   +...+.++++.+++...+                         .
T Consensus       191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------------------~  243 (420)
T 3vl1_A          191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL-------------------------H  243 (420)
T ss_dssp             T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC-------------------------G
T ss_pred             C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCccee-------------------------e
Confidence            5  678999999999999999999888777764   455788888776543221                         1


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEE
Q 001358          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE  650 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~  650 (1092)
                      ..+   ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ ++++++.||.|++||
T Consensus       244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            111   267888899999999999999999999999999888777542 335689999999999 999999999999999


Q ss_pred             CCCCCe-eeeccc-ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcccee-cc
Q 001358          651 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LL  727 (1092)
Q Consensus       651 ~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~-~~  727 (1092)
                      +.++.. +..+.. +...+.++.+                       ++++++++++.|+.+++|++.......... ..
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  376 (420)
T 3vl1_A          320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE  376 (420)
T ss_dssp             TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred             cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence            998743 566665 4555655543                       467889999999999999987532221111 00


Q ss_pred             --cCCccccccEEEEEEecCCc---EEEEeecCCeeEEeeec
Q 001358          728 --LPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP  764 (1092)
Q Consensus       728 --~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~i~lw~~~  764 (1092)
                        .....+...|.+++|+|+++   .+++++.+|.+.+|++.
T Consensus       377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence              01134778899999999999   89999999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.7e-35  Score=358.79  Aligned_cols=299  Identities=18%  Similarity=0.252  Sum_probs=253.3

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ....|++|++.|++++|+|++..+|++|+.|++|+|||+.++.....              .....+.+|...|.+++|+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s  439 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS  439 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence            34578999999999999998755899999999999999987643321              0112377999999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE---e
Q 001358          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E  482 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~  482 (1092)
                      |+|++|++|+.|++|+|||+.++....   .+.+|...|.+++|+|+++  .|++|+.|++|++||..........   .
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence            999999999999999999999986554   6789999999999999999  7999999999999997655433222   4


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      +|...|.+++|++......+++++.||+|++||++.......+..|...|.+++|+|+|++|++++.    ++.|++||+
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~  590 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL  590 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence            6889999999987665578999999999999999999888899999999999999999999999986    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-----------------CCCC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN  625 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v  625 (1092)
                      .+++.+..+..+    ..+.+++|+|++.++++++ ++.|++||+.++..+..+..+..                 ...+
T Consensus       591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (694)
T 3dm0_A          591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC  665 (694)
T ss_dssp             TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred             CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence            999988777543    5799999999987776665 56699999999998887754311                 1125


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          626 PRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      .+++|+|+|++|++|+.||.|++|++.
T Consensus       666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          666 TSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            689999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.3e-34  Score=330.84  Aligned_cols=328  Identities=16%  Similarity=0.223  Sum_probs=280.9

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ..+.+.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+..                   +.+|...|.+++|+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~  168 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR  168 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence            34678999987643 3556787 699999999999999999987765                   77899999999997


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                        +++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|++|++||+.+++.+..+.+|.
T Consensus       169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  239 (445)
T 2ovr_B          169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV  239 (445)
T ss_dssp             --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred             --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence              6799999999999999999986554   788999999999996  44  69999999999999999999999999999


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ..|.++++    ++.++++++.||.|++||+++......+..+...+.+++|  ++.++++++.    ++.|++||..++
T Consensus       240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~  309 (445)
T 2ovr_B          240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG  309 (445)
T ss_dssp             SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred             ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence            99999988    5678999999999999999999888899999999999998  8899999986    566999999999


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-CCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      +.+..+.+|.   ..+.++.++  ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+  ++++++++.||
T Consensus       310 ~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  382 (445)
T 2ovr_B          310 NCIHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG  382 (445)
T ss_dssp             CEEEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             CEEEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence            9999998887   788887774  6799999999999999999999999987632 34568888885  68999999999


Q ss_pred             eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1092)
                      .|++|++.+++.+..+...                                                             
T Consensus       383 ~v~iwd~~~~~~~~~~~~~-------------------------------------------------------------  401 (445)
T 2ovr_B          383 TVKLWDLKTGEFIRNLVTL-------------------------------------------------------------  401 (445)
T ss_dssp             EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred             eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence            9999999988665544210                                                             


Q ss_pred             ecccCCccccccEEEEEEecCCcEEEEeecCCe----eEEeeecC
Q 001358          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  765 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~lw~~~~  765 (1092)
                          ....+...|.+++|+|++..+++++.||.    +.+||+..
T Consensus       402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence                00125677889999999999999999887    88888764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.6e-34  Score=319.10  Aligned_cols=289  Identities=20%  Similarity=0.222  Sum_probs=240.0

Q ss_pred             eeecCCCCcEEEEEE-----CC-CCCEEEEEeCCCEEEEEEccCCCCc----cceEEecccccceeEEEeeCCCCcEEEE
Q 001358          390 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVI  459 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~  459 (1092)
                      ..+.+|...|.+++|     ++ |+++||+|+.|++|++||+.+++..    .....+.+|...|.+++|+|++.  +++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~   92 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI   92 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence            358899999999999     77 9999999999999999999865421    23446889999999999999999  899


Q ss_pred             EEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEE
Q 001358          460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA  536 (1092)
Q Consensus       460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~  536 (1092)
                      +|+.|++|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+... ......   .+...+.+++
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence            999999999999999999999999999999999965  6789999999999999999743 333322   5677899999


Q ss_pred             EecCC----------CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001358          537 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  606 (1092)
Q Consensus       537 ~s~dg----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd  606 (1092)
                      |+|++          .++++++.    ++.|++|| .++.....+.+|.   ..|.+++|+|++++|++|+.||.|++||
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence            99987          68888876    67799999 5567777888887   8999999999999999999999999999


Q ss_pred             CC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee--ecc-----------cccccceeeee
Q 001358          607 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV  672 (1092)
Q Consensus       607 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~v~~~~~  672 (1092)
                      +. .......+...   ..|.+++|+|++.+++++ .|+.+++|++.++....  .+.           +|...+.+++|
T Consensus       242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  317 (343)
T 2xzm_R          242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW  317 (343)
T ss_dssp             SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred             CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence            94 44444444322   248999999999888755 57789999998765433  222           45556666666


Q ss_pred             cCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1092)
                      +                      |+|+++++++.||.|++|++..
T Consensus       318 s----------------------p~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          318 N----------------------ALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             C----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred             C----------------------CCCCeEEEecCCceEEEEEEEc
Confidence            4                      7899999999999999999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-36  Score=346.65  Aligned_cols=337  Identities=15%  Similarity=0.229  Sum_probs=264.2

Q ss_pred             CceEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       579 ~~v~~~~~~~~~~-~l~~~----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      ..+.+++|+|+++ +++++          +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            3578899999987 88888          889999999999876332222222345699999999999999999999999


Q ss_pred             EEECCCC----CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccc
Q 001358          648 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  723 (1092)
Q Consensus       648 iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~  723 (1092)
                      +|++.+.    .....+.                                                              
T Consensus        93 vw~~~~~~~~~~~~~~~~--------------------------------------------------------------  110 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFS--------------------------------------------------------------  110 (416)
T ss_dssp             EECCSSTTSCCCEEEECC--------------------------------------------------------------
T ss_pred             Eeecccccccccchhhcc--------------------------------------------------------------
Confidence            9998862    2222222                                                              


Q ss_pred             eecccCCccccccEEEEEEecC-CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCC
Q 001358          724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  802 (1092)
Q Consensus       724 ~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  802 (1092)
                              +|...|.+++|+|+ +..+++++.||.|++|++.........       ....        .....  ..|.
T Consensus       111 --------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------~~~~--------~~~~~--~~~~  165 (416)
T 2pm9_A          111 --------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN-------YTPL--------TPGQS--MSSV  165 (416)
T ss_dssp             --------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT-------CCCB--------CCCCS--CCSS
T ss_pred             --------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc-------cccc--------ccccc--cCCC
Confidence                    25666777888887 778888888888888887553210000       0000        00001  1488


Q ss_pred             CCeeEEEEecC-CCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEeCCC---eEEEE
Q 001358          803 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY  871 (1092)
Q Consensus       803 ~~v~~~~~s~d-g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~~dg---~v~iw  871 (1092)
                      ..|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+      ...+.+++|+|++..++++++.|+   .|++|
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            89999999999 78888887 799999999999999998876      788999999994447999999999   99999


Q ss_pred             EcCCc-eeeEeec-cccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358          872 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       872 d~~~~-~~~~~l~-~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                      |+.++ +.+..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++.     +....++..   .|.+++|+|++
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~~~~~~---~v~~~~~s~~~  317 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQFPARGN---WCFKTKFAPEA  317 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEEECSSS---CCCCEEECTTC
T ss_pred             eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceeecCCCC---ceEEEEECCCC
Confidence            99986 6778888 8999999999999 999999999999999999998653     333334433   69999999999


Q ss_pred             -CEEEE-EeCCcEEEEEcCCceeeeeec----------------------------------cCCCcCEEEEEEecCCCE
Q 001358          949 -TRFLL-VHETHLAIYEAEELTCLKQWF----------------------------------PISSVPISQATFSCDCRM  992 (1092)
Q Consensus       949 -~~la~-~~d~~v~lwd~~~~~~~~~~~----------------------------------~~h~~~v~~l~fs~dg~~  992 (1092)
                       .+|++ +.|+.|++||+.++.......                                  ..|..++.+++|||||++
T Consensus       318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  397 (416)
T 2pm9_A          318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL  397 (416)
T ss_dssp             TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred             CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence             78888 678999999998776433210                                  115678889999999999


Q ss_pred             EEEEeCCCcEEEEECCCC
Q 001358          993 VFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       993 l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      |++++.|++|+||++.+.
T Consensus       398 la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          398 VQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ECBCTTSSCBCCBCCCCC
T ss_pred             EEEeCCCCeEEEEEeccC
Confidence            999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=7.2e-34  Score=332.04  Aligned_cols=305  Identities=17%  Similarity=0.230  Sum_probs=266.7

Q ss_pred             cceeEecccCCCCc-eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358          324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V-~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      .....++.+|.+.| .+++|  +++ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.++
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l  168 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL  168 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred             CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence            34567899999886 56666  556 699999999999999999987765                   77899999999


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCCce---
Q 001358          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR---  477 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~---  477 (1092)
                      +|+|++ +|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  +++  ++++|+.|++|++||+.++..   
T Consensus       169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~  242 (464)
T 3v7d_B          169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD  242 (464)
T ss_dssp             EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred             EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence            999988 99999999999999999986544   7889999999999995  556  899999999999999987753   


Q ss_pred             --------------------eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001358          478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1092)
Q Consensus       478 --------------------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~  537 (1092)
                                          +..+.+|...|.++..    ++.++++++.||.|++||+.+.+....+..+...|.+++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  318 (464)
T 3v7d_B          243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY  318 (464)
T ss_dssp             ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence                                5567889999988843    5679999999999999999999999999999999999999


Q ss_pred             ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      +|+++++++++.    ++.|++||..+++.+..+.+|.   ..|.++.|+  ++++++++.||.|++||+.++.......
T Consensus       319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~  389 (464)
T 3v7d_B          319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH  389 (464)
T ss_dssp             ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence            999999999986    5669999999999999999888   899999997  4799999999999999999988776665


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeee-cccccccceeeeec
Q 001358          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN  673 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~  673 (1092)
                      ..   ..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus       390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK  442 (464)
T ss_dssp             CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred             CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence            32   3477899999999999998 89999999999998875 66788888888885

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-34  Score=328.48  Aligned_cols=298  Identities=15%  Similarity=0.138  Sum_probs=249.6

Q ss_pred             cceeEecccCCCCceEEeecCCC-ceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg-~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ......+.+|.+.|++++|+|+| + +|++|+.|+.|+|||+.+++......                 ..+|...|.++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~  124 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM  124 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence            45667889999999999999999 6 79999999999999999887665421                 34799999999


Q ss_pred             EECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358          403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++  +|++++.|+.|++||+ +++.+..+
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~  200 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE  200 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence            9999 789999999999999999996 33332222334558899999999999  8999999999999998 68889999


Q ss_pred             ecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCceEEEEEec-CCCEEEEEecCCCCce
Q 001358          482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES  555 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~  555 (1092)
                      .+|...|.+++|++  ++. ++++++.|+.|++||+++    ......+ .+...|.+++|+| ++++|++++.    ++
T Consensus       201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~  273 (383)
T 3ei3_B          201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN  273 (383)
T ss_dssp             ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred             ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence            99999999999965  556 999999999999999987    3344444 5788999999999 9999999986    66


Q ss_pred             eEEEEeCCCCeEEEEEeecccc--------------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC
Q 001358          556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      .|++||+.+++....+.+|...              ...+..++|+|++++  +++.|+.|++||+.+++.+..+..+.+
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~  351 (383)
T 3ei3_B          274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA  351 (383)
T ss_dssp             EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred             cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence            7999999999888777765411              133445666777666  777999999999999999999987655


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          622 LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ...+..++|+|++++|++++ |+.|++|++.+
T Consensus       352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            55677789999999999997 89999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.2e-34  Score=329.03  Aligned_cols=299  Identities=13%  Similarity=0.128  Sum_probs=257.3

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC------ceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~------~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      .+...+.+|.+.|++++|+|  + +|++|+.||+|+|||+.+++      .+..                   +.+|...
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~   64 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG   64 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred             hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence            45678899999999999999  4 68999999999999999987      3332                   6689999


Q ss_pred             EEEEEECCC----C---CEEEEEeCCCEEEEEEccCCCCcc--ceEEeccc-----ccceeEEEee----CCCCcEE-EE
Q 001358          399 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VI  459 (1092)
Q Consensus       399 V~~l~~spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h-----~~~v~~~~~s----~d~~~l~-l~  459 (1092)
                      |.+++|+|+    |   ++|++++.|+.|++||+.+++...  ....+..|     ...|.+++|+    |+++  . |+
T Consensus        65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~  142 (397)
T 1sq9_A           65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV  142 (397)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred             EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence            999999999    9   999999999999999999887510  03367778     5899999999    9999  7 99


Q ss_pred             EEeCCCcEEEEECCC------CceeE-----EEec-------CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc
Q 001358          460 TCGDDKTIKVWDAVT------GSRTY-----SFEG-------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA  521 (1092)
Q Consensus       460 s~~~d~~i~vwd~~~------~~~~~-----~~~~-------~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~  521 (1092)
                      +++.|+.|++||+.+      ++.+.     .+.+       |...|.+++|++  ++ ++++++.||.|++||+++...
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence            999999999999998      77776     7744       889999999965  66 999999999999999999888


Q ss_pred             eEEecC---C---CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------ccccCCceE
Q 001358          522 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVS  582 (1092)
Q Consensus       522 ~~~~~~---~---~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~  582 (1092)
                      ...+..   |   ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+             |.   ..|.
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~  295 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM  295 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred             eEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence            888888   7   88999999999999999998620 017899999999999999988             66   8999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe------CC-------------CCCCCCceEEEccCC---------
Q 001358          583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG---------  634 (1092)
Q Consensus       583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~---------  634 (1092)
                      +++|+|++++|++++.||.|++||+.+++.+..+.      .+             .+...|.+++|+|++         
T Consensus       296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~  375 (397)
T 1sq9_A          296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL  375 (397)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence            99999999999999999999999999999999988      43             014569999999998         


Q ss_pred             -CEEEEEeCCCeEEEEECCCC
Q 001358          635 -TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       635 -~~l~~~~~dg~i~iw~~~~~  654 (1092)
                       ++|++++.||.|++|++.++
T Consensus       376 ~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          376 NESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SCEEEEEETTTEEEEEEEEC-
T ss_pred             cceEEEecCCCcEEEEEcCCC
Confidence             79999999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-36  Score=348.51  Aligned_cols=341  Identities=10%  Similarity=0.058  Sum_probs=249.9

Q ss_pred             eeEecccCCCCceEEeecCCC---------ceEEEE-------------------EcCcCcEEEEecCCCCceeeeeeee
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKV  377 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg---------~~llas-------------------g~~d~~i~iwd~~~~~~~~~~~~~~  377 (1092)
                      +..++. +.+.|++|+|+|++         + +||+                   |+.|++|+|||+.+++.....    
T Consensus       126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~----  199 (524)
T 2j04_B          126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK----  199 (524)
T ss_dssp             CEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE----
T ss_pred             ceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE----
Confidence            333444 45689999999886         4 4555                   456788999999887643210    


Q ss_pred             eecccccceeEEeeecCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEEccCCCCc--------cceEEecccccc
Q 001358          378 WDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGN  443 (1092)
Q Consensus       378 ~d~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~l~~h~~~  443 (1092)
                                 ...+.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.++...        .....+.+|...
T Consensus       200 -----------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~  268 (524)
T 2j04_B          200 -----------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL  268 (524)
T ss_dssp             -----------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred             -----------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence                       1125568899999999997      679999999999999999877532        123367899999


Q ss_pred             eeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc-eeEEEecCCcceEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCc
Q 001358          444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGA  521 (1092)
Q Consensus       444 v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~  521 (1092)
                      |++++|++++   .|++|+.||+|++||+.++. ....+.+|...|.++++...+++ .+|++++.||+|++||+++.+.
T Consensus       269 v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          269 ITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             EEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            9999999864   59999999999999999874 45678999999999954335566 7999999999999999988766


Q ss_pred             eEEecCCC--CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001358          522 RVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD  599 (1092)
Q Consensus       522 ~~~~~~~~--~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d  599 (1092)
                      ...+..+.  ..+.+++|+|+++.+++++.    ++.|++||++++.++..+.+|.   +.|.+++|+|+++.|++|+.|
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~D  418 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSAD  418 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETT
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECC
Confidence            55554443  35788999999999988865    6679999999999888898887   899999999999999999999


Q ss_pred             CeEEEEECCCCceEEEEeCC---CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC-CCCeeeecccccccceeeeecCC
Q 001358          600 HVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      |+|++||+..+ .+......   .....+..++|+|+++.+. ...  .+.+|... ++..+..+.+|...|.+++|+|+
T Consensus       419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~  494 (524)
T 2j04_B          419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNET  494 (524)
T ss_dssp             TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCS
T ss_pred             CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCC
Confidence            99999998654 21111100   0111356889999998553 222  23344332 45677788899999999999854


Q ss_pred             cccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      +                   +.+..+++|+.+|.|+||++.
T Consensus       495 ~-------------------~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          495 S-------------------AGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             T-------------------TTTTEEEEECTTSEEEEEECS
T ss_pred             C-------------------CccHHHHhhccCceEEEEEcc
Confidence            2                   235689999999999999976

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=318.61  Aligned_cols=292  Identities=12%  Similarity=0.099  Sum_probs=259.4

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ....|.+|++.|++++|+|+|+ +|++|+.||.|+|||+.+++.+..                   +.+|...|.+++|+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~   83 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD   83 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred             ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence            3467899999999999999998 789999999999999999987765                   67899999999999


Q ss_pred             CCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCCCc----
Q 001358          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS----  476 (1092)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~----  476 (1092)
                      |++++|++++.|+.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+.++.    
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~  157 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE  157 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence            999999999999999999999987655   344 888999999999999  78999888     999999988664    


Q ss_pred             -------eeEEEecCCc--ceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCCEEEE
Q 001358          477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       477 -------~~~~~~~~~~--~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                             .+..+..|..  .+.+++|++  ++.+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  235 (369)
T 3zwl_B          158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT  235 (369)
T ss_dssp             EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence                   3455566666  899999965  668999999999999999998 6667788889999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCce
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL  612 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--------------~i~iwd~~~~~~  612 (1092)
                      ++.    ++.|++||+.+++.+..+.. .   ..+..++|+|+++++++++.++              .+++||..+++.
T Consensus       236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            976    66799999999999888873 3   6899999999999999999888              899999999999


Q ss_pred             EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      +..+..+.  ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus       308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            99988664  469999999999999999999999999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=310.99  Aligned_cols=293  Identities=20%  Similarity=0.269  Sum_probs=256.1

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ....++|.+|.+.|++++| |+++ +|++|+.||.|+|||+.+++....                   +..|...|.+++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~   66 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC   66 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence            4677899999999999999 9998 689999999999999988776653                   556899999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      |+|++++|++++.|+.|++|++...........+.+|...|.+++|  +++  .+++++.|+.|++||  .++.+..+..
T Consensus        67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence            9999999999999999999999876554555578899999999999  456  799999999999999  7888889999


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      |...+.++++.+. ++.++++++.||.|++||  .......+.. +...+.+++|+|++. +++++.    ++.|++||.
T Consensus       141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~  212 (313)
T 3odt_A          141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM  212 (313)
T ss_dssp             CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred             CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence            9999999999763 557999999999999999  3445555555 788999999999999 777765    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .+++.+..+.+|.   ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++ +++++.
T Consensus       213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~  285 (313)
T 3odt_A          213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS  285 (313)
T ss_dssp             TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred             CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence            9999999999887   899999999998 69999999999999999999999998764  3689999999998 667999


Q ss_pred             CCeEEEEECCCCCeee
Q 001358          643 ENRIKILETPESNSVD  658 (1092)
Q Consensus       643 dg~i~iw~~~~~~~~~  658 (1092)
                      ||.|++|++.+++...
T Consensus       286 dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          286 DNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             TSCEEEEESCGGGCCC
T ss_pred             CCcEEEEeCCCCceee
Confidence            9999999998775543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.9e-33  Score=322.66  Aligned_cols=319  Identities=18%  Similarity=0.280  Sum_probs=271.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+  +.  ++++|+.|++|++||
T Consensus       114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN  185 (445)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence            6789887543 355579999999999999999999987554   788999999999998  44  799999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +.+++.+..+.+|...|.+++++    +..+++++.||.|++||+.+.+....+..+...+.++++  +++++++++.  
T Consensus       186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--  257 (445)
T 2ovr_B          186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY--  257 (445)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred             CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence            99999999999999999999983    358999999999999999999998899999999999988  7889999886  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        ++.|++||..+++.+..+.+|.   ..|.++.|  ++.++++++.||.|++||+.+++.+..+..+..  .+.++.+ 
T Consensus       258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~-  327 (445)
T 2ovr_B          258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL-  327 (445)
T ss_dssp             --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred             --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence              5679999999999999998887   88999999  788999999999999999999999988876533  4555554 


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                       +++++++++.||.|++||+.+++.+..+..+                                                
T Consensus       328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------  358 (445)
T 2ovr_B          328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------  358 (445)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred             -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence             5779999999999999998765433222100                                                


Q ss_pred             eeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCce
Q 001358          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1092)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (445)
T 2ovr_B          359 --------------------------------------------------------------------------------  358 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe-----cCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                             ..|...|.+++|+  ++++++++ ||.|++||+.+++.+..+     ..|.+.|.+++|+| ++.++|+|+.|
T Consensus       359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d  428 (445)
T 2ovr_B          359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN  428 (445)
T ss_dssp             -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred             -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence                   0155667777774  57888887 789999999999888887     46788999999999 89999999999


Q ss_pred             Ce----EEEEEcCC
Q 001358          866 ST----ILIYNARS  875 (1092)
Q Consensus       866 g~----v~iwd~~~  875 (1092)
                      |+    |.+||+..
T Consensus       429 g~~~~~l~v~df~~  442 (445)
T 2ovr_B          429 GTEETKLLVLDFDV  442 (445)
T ss_dssp             SSSCCEEEEEECCC
T ss_pred             CCCccEEEEEECCC
Confidence            97    99999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.2e-33  Score=325.56  Aligned_cols=319  Identities=18%  Similarity=0.263  Sum_probs=270.7

Q ss_pred             ecCCCCcE-EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          392 VRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       392 l~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      +.+|...| .++.|  ++++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+|++   .+++|+.||+|++|
T Consensus       117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEEE
T ss_pred             EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEEE
Confidence            66898875 55555  67899999999999999999986554   788999999999999987   59999999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-----------------------eEEecC
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYDA  527 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----------------------~~~~~~  527 (1092)
                      |+.+++.+..+.+|...|.++++.+.+++.++++++.||.|++||+.....                       ...+..
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            999999999999999999999999888889999999999999999987653                       234556


Q ss_pred             CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      +...+.++  +++++++++++.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|+++++++|+.||.|++||+
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~dg~i~vwd~  339 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHT---DRIYSTIYDHERKRCISASMDTTIRIWDL  339 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             ccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            66666655  788999999986    5669999999999999999887   89999999999999999999999999999


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCc
Q 001358          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  687 (1092)
                      .+++.+..+..|.  ..|.+++|+  ++++++++.||.|++||+.+.......                           
T Consensus       340 ~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~---------------------------  388 (464)
T 3v7d_B          340 ENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY---------------------------  388 (464)
T ss_dssp             TTTEEEEEECCCS--SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE---------------------------
T ss_pred             CCCcEEEEEeCCC--CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee---------------------------
Confidence            9999999987664  468888887  689999999999999998753211000                           


Q ss_pred             eeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCc
Q 001358          688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1092)
Q Consensus       688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~  767 (1092)
                                                                                                      
T Consensus       389 --------------------------------------------------------------------------------  388 (464)
T 3v7d_B          389 --------------------------------------------------------------------------------  388 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEE-ecCCCCCe
Q 001358          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPTA  846 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~-~~~~~~~i  846 (1092)
                                                      .+...+..++|++++++++++++|.|++||+.+++.+.. +..|...|
T Consensus       389 --------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v  436 (464)
T 3v7d_B          389 --------------------------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI  436 (464)
T ss_dssp             --------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEE
T ss_pred             --------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcE
Confidence                                            033445678899999999999999999999999999886 66788999


Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358          847 TSLAFNPHDNNVIAIGMDDSTILIYN  872 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1092)
                      .+++|+  ++.++++++.||.+.+|-
T Consensus       437 ~~v~~~--~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          437 WSVNFK--GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred             EEEEec--CCEEEEEEEeCCeEEEEE
Confidence            999997  466777778888666554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-35  Score=340.28  Aligned_cols=350  Identities=10%  Similarity=0.043  Sum_probs=242.7

Q ss_pred             CCCcEEEEEECCCC---------CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC
Q 001358          395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1092)
Q Consensus       395 h~~~V~~l~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~  465 (1092)
                      +.+.|.+++|+|++         ++||+|+.++.        +                  ...+|+++  .+++++.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~  183 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS  183 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence            57899999999987         89999986642        0                  01378998  799999999


Q ss_pred             cEEEEECCCCcee----EEEecCCcceEEEeeccc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001358          466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD  526 (1092)
Q Consensus       466 ~i~vwd~~~~~~~----~~~~~~~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~  526 (1092)
                      +|+|||+.+++..    ..+.+|.+.|.+++|+|.    +++.+|++++.||+|++||+.....           ...+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            9999999887653    456778899999999886    3467999999999999999976542           23567


Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-EEEEEeeccccCCceEEE--EEcCCC-CEEEEEeCCCeE
Q 001358          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI  602 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~s~dg~i  602 (1092)
                      .|...|.+++|++++ .|++++.    ++.|++||+.++. ....+.+|.   ..|.++  +|+|++ .+|++++.|++|
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            788899999999865 7888876    7789999999774 445677877   899999  578887 889999999999


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccc
Q 001358          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  682 (1092)
                      ++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++..+..+.+                    
T Consensus       336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--------------------  395 (524)
T 2j04_B          336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--------------------  395 (524)
T ss_dssp             EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred             EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence            999999887766655443223478999999999999999999999999987654443333                    


Q ss_pred             ccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEee
Q 001358          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  762 (1092)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~  762 (1092)
                                                                        |.+.|.+++|+|+|+.|++++.||.+++|+
T Consensus       396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence                                                              555677777777777777777777777776


Q ss_pred             ecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC
Q 001358          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP  841 (1092)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~  841 (1092)
                      .....               +....+.       ....+...+.+++|+|+++.+..  .+.+.+|+.. ++..+..+.+
T Consensus       426 ~~~~~---------------~~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g  481 (524)
T 2j04_B          426 AARRL---------------LHGIKNS-------SATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA  481 (524)
T ss_dssp             SCSST---------------TTCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred             chHhh---------------ccccccC-------ccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence            43210               0000000       00002234678899999985532  2233344433 5677888999


Q ss_pred             CCCCeEEEEEcCCCC---CEEEEEeCCCeEEEEEcCC
Q 001358          842 PSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       842 ~~~~i~~l~~s~~d~---~~lasg~~dg~v~iwd~~~  875 (1092)
                      |...|.+++|+| ++   .++|+|+.||.|+||++..
T Consensus       482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence            999999999999 64   5999999999999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=321.59  Aligned_cols=300  Identities=12%  Similarity=0.209  Sum_probs=249.7

Q ss_pred             CcceeEecccCCCCceEEeecCCCceEEEEEcC---cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      |......+.+|.+.|.+++|+|++..++++|+.   |+.|+|||+.+++.....                  ..+|...|
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v   68 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI   68 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence            445567778999999999999999878889987   999999999998765431                  22589999


Q ss_pred             EEEEECCC---CCEEEEEeCCCEEEEEEccCCC-CccceEEecccccceeEEE------eeCCCCcEEEEEEeCCCcEEE
Q 001358          400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       400 ~~l~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~------~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      .+++|+|+   |++|++|+.|+.|++||+.+++ .+.   .+.+|...|.+++      |+|+++  .|++++.|+.|++
T Consensus        69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~v  143 (357)
T 3i2n_A           69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKV  143 (357)
T ss_dssp             EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEE
T ss_pred             EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEE
Confidence            99999998   7999999999999999999886 443   6789999999995      568898  8999999999999


Q ss_pred             EECCCCc-eeEEEecCCc----ceEEEeec--ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec---
Q 001358          470 WDAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---  539 (1092)
Q Consensus       470 wd~~~~~-~~~~~~~~~~----~v~~i~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~---  539 (1092)
                      ||+.+++ .+..+..|.+    .+.+++|.  .++++.++++++.||.|++||+++...... ..+...+.+++|+|   
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSS
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCC
Confidence            9999987 7788876665    78888742  245778999999999999999998776443 55677999999999   


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-----eccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---
Q 001358          540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV---  610 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~---  610 (1092)
                      ++.++++++.    ++.|++||..+++....+.     +|.   ..|.+++|+|+++ ++++++.||.|++||+.++   
T Consensus       223 ~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  295 (357)
T 3i2n_A          223 SMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR  295 (357)
T ss_dssp             SCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred             CCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence            9999999876    6679999999887665554     555   8999999999998 7999999999999998754   


Q ss_pred             ----------------ceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCC
Q 001358          611 ----------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN  655 (1092)
Q Consensus       611 ----------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~  655 (1092)
                                      +.+..+..+  ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus       296 ~~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          296 SKKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             --CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             ccccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                            345555554  45699999999999998 79999999999998653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=9.9e-33  Score=307.85  Aligned_cols=299  Identities=21%  Similarity=0.304  Sum_probs=250.5

Q ss_pred             ecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCCCCc--cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      |.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~  111 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR  111 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence            8899999999999997 689999999999999999876543  23446789999999999999999  899999999999


Q ss_pred             EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCC--EEE
Q 001358          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGR--RLF  545 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~--~l~  545 (1092)
                      +|+...+........+...+..+.+.+  ++.+|++++.|+.+++||........ ....+...+..++|++++.  .++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence            999999999988888888888888754  56799999999999999987655433 4556778899999998764  566


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      +++.    ++.|++||..+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+   ..+
T Consensus       190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v  259 (340)
T 4aow_A          190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DII  259 (340)
T ss_dssp             EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCE
T ss_pred             EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceE
Confidence            6665    6679999999999999999888   89999999999999999999999999999999999888765   358


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      .+++|+|++.++ +++.|+.|++||+.++..+..+.....                                        
T Consensus       260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------------------------  298 (340)
T 4aow_A          260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI----------------------------------------  298 (340)
T ss_dssp             EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred             EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence            999999987655 556789999999987765544432110                                        


Q ss_pred             cccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCC
Q 001358          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                                           ......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus       299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence                                 0011237788999999999999999999999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.5e-34  Score=328.55  Aligned_cols=274  Identities=12%  Similarity=0.181  Sum_probs=212.4

Q ss_pred             CCcceeEec-ccCCCCceEEeecC-CCceEEEEEcCcCcEEEEecCC---CCceeeeeeeeeecccccceeEEeeecCCC
Q 001358          322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      .....+..+ .+|.+.|++++|+| +|+ +||+|+.||+|+|||+.+   +.....                 ....+|.
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~  111 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS  111 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence            335667777 89999999999999 998 799999999999999987   432210                 0011499


Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEcc---CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      ..|.+++|+|++++|++|+.|+.|++||++   +++...   .+.+|  .+..+.|+|++                    
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~--------------------  166 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG--------------------  166 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence            999999999999999999999999999995   544332   34444  67777777643                    


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEecCCCEEEEEecCC
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                                +...+.++.+...+++.+|++++.||.|++||+++.+....+..  |...|.+++|+|++++|++++.  
T Consensus       167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--  234 (437)
T 3gre_A          167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--  234 (437)
T ss_dssp             ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred             ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence                      22334445544566788999999999999999999998888887  6789999999999999999987  


Q ss_pred             CCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC-----
Q 001358          552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT----AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----  621 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~----~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-----  621 (1092)
                        ++.|++||+++++.+..+. .+.   ..|.+++|+|    ++.++++++.||.|++||+.+++.+..+..+..     
T Consensus       235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (437)
T 3gre_A          235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME  309 (437)
T ss_dssp             --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred             --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence              5679999999999988886 544   6899996654    577999999999999999999999988875532     


Q ss_pred             -------------------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358          622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       622 -------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                                         ...|.+++|+ ++++|++++.|+.|++||+.+++.
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence                               2235555665 455666666666666666655433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=5.6e-34  Score=321.63  Aligned_cols=295  Identities=16%  Similarity=0.218  Sum_probs=247.8

Q ss_pred             EecccCCCCceEEeecCC---CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spd---g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+.+|.+.|++++|+|+   +..++++++.++.|+|||+.+++.+....              ......|...|.+++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~   77 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW   77 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence            455699999999999984   44356666666799999999887665321              1113347889999999


Q ss_pred             CCC----CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      +|+    |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+.
T Consensus        78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA  152 (366)
T ss_dssp             EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence            999    6799999999999999999986554   6778999999999999 788  89999999999999999999999


Q ss_pred             EE---ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----------------------------cCC
Q 001358          480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAP  528 (1092)
Q Consensus       480 ~~---~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----------------------------~~~  528 (1092)
                      .+   .+|...|.+++|++  ++.+|++++.||.|++||+++.+....+                            ..+
T Consensus       153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            88   68999999999965  6689999999999999999876543322                            237


Q ss_pred             CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--------------EEEEeeccccCCceEEEEEcCC--CCE
Q 001358          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ  592 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~  592 (1092)
                      ...|.+++|+  ++++++++.    ++.|++||+.++..              +..+.+|.   ..|.+++|+|+  +++
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred             cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence            7889999998  778888875    67799999988744              66777776   78999999999  999


Q ss_pred             EEEEeCCCeEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      +++++.||.|++||+.+++    ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999999999875    44467666545679999999999999999999999999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.8e-33  Score=312.70  Aligned_cols=203  Identities=13%  Similarity=0.127  Sum_probs=171.7

Q ss_pred             CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358          801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      +...+.+++|||||+++++++   |++|+|||+.+++++..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence            556688999999999988765   6899999999999998886 778899999999 99999999855 56677777766


Q ss_pred             eeE--eeccccCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001358          878 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       878 ~~~--~l~~h~~~V~~l~~spdg~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      .+.  ...+|...|.+++|+||++++++++.|+    .+++|++......... .....++..   .|.+++|||||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~---~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFK---GITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCS---CEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCC---CeEeEEECCCCCce
Confidence            543  4456999999999999999999999887    6888998875433221 223334433   69999999999999


Q ss_pred             EE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358          952 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       952 a~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      |+ +.|++|+|||+.+++++..+..+|...|++++|||||++|||||.|++|+||+++..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99 578999999999999999888899999999999999999999999999999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3e-34  Score=331.18  Aligned_cols=303  Identities=17%  Similarity=0.195  Sum_probs=239.1

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      ......+|...|+|++|+|.+..+||+|+.||+|+|||+.+++......                 +.+|.+.|++|+|+
T Consensus       111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~  173 (435)
T 4e54_B          111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFN  173 (435)
T ss_dssp             SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEEC
T ss_pred             ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEe
Confidence            3456678999999999999654489999999999999999886554311                 56899999999999


Q ss_pred             C-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      | ++++|++|+.|++|++||++++. .........+...+.+++|+|+++  +|++|+.||.|++||++ ++.+..+.+|
T Consensus       174 p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h  249 (435)
T 4e54_B          174 PLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMH  249 (435)
T ss_dssp             SSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCC
T ss_pred             CCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecc
Confidence            8 78999999999999999998753 222212223445688999999999  89999999999999975 5667888999


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1092)
                      ...|.+++|++.. ..++++++.|+.|++||++......   ....|...|.+++|+|+|++|++++.    ++.|++||
T Consensus       250 ~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd  324 (435)
T 4e54_B          250 KKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYS  324 (435)
T ss_dssp             SSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEE
T ss_pred             cceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEE
Confidence            9999999997653 3588999999999999998766543   33567789999999999999999986    66799999


Q ss_pred             CCCCeEEEEEeeccccC---CceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceEEEEeCCCCCCCCc
Q 001358          562 ESEGAIKRTYQGLQLQH---NSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~s------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                      ..++.....+..|....   ..+..+.|+|++..+++++            .++.|++||..+++.+..+..+. ...|.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~  403 (435)
T 4e54_B          325 ASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGIS  403 (435)
T ss_dssp             SSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCC
T ss_pred             CCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEE
Confidence            99998887776654111   1233456777777776654            34679999999999988875433 34577


Q ss_pred             eE-EEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358          627 RI-CFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       627 ~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      ++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus       404 s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          404 SLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            76 6999999999876 78999999988754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.3e-33  Score=315.21  Aligned_cols=291  Identities=12%  Similarity=0.073  Sum_probs=246.6

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCC--ceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +..|.+.|++++|+|||+ +|++|+.|+.|+|||+.+++  .+..                   +.+|...|.+++|+|+
T Consensus         4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~   63 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD   63 (372)
T ss_dssp             EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred             ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence            456889999999999998 78999999999999999886  3332                   6689999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce---eEEE-ec
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSF-EG  483 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~-~~  483 (1092)
                      +++|++++.|+.|++||+.+++... ...+..|...|.+++|+|+++  ++++++.|+.|++||+.+++.   ...+ .+
T Consensus        64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  140 (372)
T 1k8k_C           64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP  140 (372)
T ss_dssp             TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence            9999999999999999998875332 224567999999999999999  899999999999999998873   3333 67


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCceEEEEEecCCCEEE
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      |...|.+++|++  ++.+|++++.||.|++||+.                  .......+..+...+.+++|+|++++|+
T Consensus       141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            899999999965  66899999999999999954                  4566677778888999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceE----------
Q 001358          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL----------  613 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~--~~~~----------  613 (1092)
                      +++.    ++.|++||..+++.+..+..|.   ..+.+++|+|++.+++++ .|+.|++|++.+  +...          
T Consensus       219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~  290 (372)
T 1k8k_C          219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ  290 (372)
T ss_dssp             EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred             EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence            9986    6679999999999999999877   899999999999877777 999999999987  4311          


Q ss_pred             ----------------------------EEEeCCCCCCCCceEEEc-cCC---CEEEEEeCCCeEEEEECCCC
Q 001358          614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES  654 (1092)
Q Consensus       614 ----------------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~  654 (1092)
                                                  ..+. .++...|.+++|. ++|   .+|++++.||.|++|++.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                                        1111 2445679999866 566   99999999999999998754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=321.89  Aligned_cols=348  Identities=11%  Similarity=0.123  Sum_probs=242.8

Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEeC-----------CCCC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL  622 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-----------~~~~  622 (1092)
                      ..+++|+...++....+.+|.   ..|.+++|+| +++++++++.||.|++||+.++.....+..           ..+.
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR   99 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred             CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence            346778888888888888877   9999999999 999999999999999999998765444321           1244


Q ss_pred             CCCceEEEcc-CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          623 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       623 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ..|.+++|+| ++.++++++.||.|++|++.+++....+.                                        
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------------------  139 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----------------------------------------  139 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence            5789999999 77899999999999999987653222111                                        


Q ss_pred             eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (408)
T 4a11_B          140 --------------------------------------------------------------------------------  139 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001358          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN  857 (1092)
Q Consensus       782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~  857 (1092)
                                         +...+.++++++   ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| ++.
T Consensus       140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~  199 (408)
T 4a11_B          140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD  199 (408)
T ss_dssp             -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred             -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence                               222344445544   445777776 68999999999999999999999999999999 666


Q ss_pred             -EEEEEeCCCeEEEEEcCCce-eeEee---------------ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCce
Q 001358          858 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI  920 (1092)
Q Consensus       858 -~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~  920 (1092)
                       ++++|+.||.|++||+.++. .+..+               .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  279 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN  279 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence             69999999999999998765 33443               57999999999999999999999999999999998663


Q ss_pred             eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358          921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
                      ..............  .....+.....+.+++++.++.|++||+.+++.+.. +.+|...|.+++|+|||++|++++.||
T Consensus       280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg  356 (408)
T 4a11_B          280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC  356 (408)
T ss_dssp             CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence            32111111111111  123334444556666668999999999999999887 568999999999999999999999999


Q ss_pred             cEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1001 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1001 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      .|++||+.+++.+.......             ....+.|.....+.+.+.++.+++|+.+
T Consensus       357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             CEEEEEECC----------------------------------------------------
T ss_pred             eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence            99999999998775443111             1122333345677888899999999875

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-33  Score=324.84  Aligned_cols=303  Identities=12%  Similarity=0.117  Sum_probs=232.4

Q ss_pred             EEEEeeccccCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEeCCCe
Q 001358          568 KRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENR  645 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~  645 (1092)
                      .....+|.   ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+
T Consensus       112 ~~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~  188 (435)
T 4e54_B          112 LQKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGT  188 (435)
T ss_dssp             CCEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred             cccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence            34455555   78999999994 5789999999999999999887766666666667899999998 7899999999999


Q ss_pred             EEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcccee
Q 001358          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1092)
                      |++||+.++.... +                                                                 
T Consensus       189 v~iwd~~~~~~~~-~-----------------------------------------------------------------  202 (435)
T 4e54_B          189 TRLQDFKGNILRV-F-----------------------------------------------------------------  202 (435)
T ss_dssp             EEEEETTSCEEEE-E-----------------------------------------------------------------
T ss_pred             EEEeeccCCceeE-E-----------------------------------------------------------------
Confidence            9999976431100 0                                                                 


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001358          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v  805 (1092)
                                      ...          +                                            .+...+
T Consensus       203 ----------------~~~----------~--------------------------------------------~~~~~~  212 (435)
T 4e54_B          203 ----------------ASS----------D--------------------------------------------TINIWF  212 (435)
T ss_dssp             ----------------ECC----------S--------------------------------------------SCSCCC
T ss_pred             ----------------ecc----------C--------------------------------------------CCCccE
Confidence                            000          0                                            133456


Q ss_pred             eEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe---
Q 001358          806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---  881 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~---  881 (1092)
                      .+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..++++|+.|+.|+|||+.+++....   
T Consensus       213 ~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~  291 (435)
T 4e54_B          213 CSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY  291 (435)
T ss_dssp             CCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB
T ss_pred             EEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE
Confidence            7889999999999998 7999999986 4667788899999999999995556899999999999999988765433   


Q ss_pred             eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-------
Q 001358          882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-------  954 (1092)
Q Consensus       882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-------  954 (1092)
                      ..+|...|++++|+|||++|++++.||.|+|||+.+++..............  ...+....|+|++..++++       
T Consensus       292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~  369 (435)
T 4e54_B          292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ--HLTPIKAAWHPRYNLIVVGRYPDPNF  369 (435)
T ss_dssp             CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS--SSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred             eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc--cceeEEEEEcCCCCEEEEEEcCCCCe
Confidence            3579999999999999999999999999999999987644322111111000  0123345566666665553       


Q ss_pred             ------eCCcEEEEEcCCceeeeeeccCCCcCEEEE-EEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001358          955 ------HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus       955 ------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~ 1013 (1092)
                            .++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+||++++|+..
T Consensus       370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          370 KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                  235799999999999988888899999987 6999999999875 889999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=307.64  Aligned_cols=289  Identities=12%  Similarity=0.146  Sum_probs=259.3

Q ss_pred             eeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ..+.+|...|.+++|+|+|++|++++.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i  100 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL  100 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence            3488999999999999999999999999999999999986554   7889999999999999999  8999999999999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--c
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G  531 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~  531 (1092)
                      ||+.+++.+..+. +...|.+++|++  ++.++++++.+     |.|++||+.....           ...+..+..  .
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            9999999999988 889999999955  67899999999     9999999976542           223344444  8


Q ss_pred             eEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      +.+++|+|+++++++++.    ++.|++||+.+ +..+..+..|.   ..|.+++|+|+++++++++.||.|++||+.++
T Consensus       178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            999999999999999876    66799999998 78888888877   89999999999999999999999999999999


Q ss_pred             ceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC--------------eEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                      +.+..+...   ..+..++|+|+++++++++.++              .+++|+..+++.+..+.+|...|.+++++   
T Consensus       251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---  324 (369)
T 3zwl_B          251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---  324 (369)
T ss_dssp             CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred             ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence            999888743   4589999999999999999988              89999999999999999999999999996   


Q ss_pred             ccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1092)
                                         |+++++++++.|+.+++|++...
T Consensus       325 -------------------~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          325 -------------------PQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred             -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence                               78899999999999999998743

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.9e-33  Score=314.66  Aligned_cols=307  Identities=16%  Similarity=0.167  Sum_probs=244.5

Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCE
Q 001358          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL  636 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~  636 (1092)
                      +|+.........+.+|.   ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus        57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred             cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence            44556677777888877   899999999999 899999999999999999999888887655667899999999 7899


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      |++++.|+.|++||+.+. .+..+..                                                      
T Consensus       134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------  158 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------  158 (383)
T ss_dssp             EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred             EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence            999999999999998732 1100000                                                      


Q ss_pred             eccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC
Q 001358          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  796 (1092)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (383)
T 3ei3_B          159 --------------------------------------------------------------------------------  158 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001358          797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR  874 (1092)
Q Consensus       797 ~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~  874 (1092)
                       ..++...|.+++|+|+++++++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.
T Consensus       159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred             -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence             001456788899999999999888 689999998 5778888999999999999999 777 99999999999999999


Q ss_pred             C----ceeeEeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC--CCCcC-------CCCCce
Q 001358          875 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP--DGVMT-------LAPSET  940 (1092)
Q Consensus       875 ~----~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~--~~~~~-------~~~~v~  940 (1092)
                      +    +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++..........  ..+..       ....+.
T Consensus       236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  314 (383)
T 3ei3_B          236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI  314 (383)
T ss_dssp             GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred             CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence            8    5666666 6999999999999 999999999999999999998664332111110  01110       012344


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
                      .++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus       315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            4666666666 3357899999999999998875532 567788889999999999997 99999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.4e-33  Score=313.05  Aligned_cols=298  Identities=11%  Similarity=0.125  Sum_probs=231.5

Q ss_pred             CceEEeecCCCceEEEEEcCc-------CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          336 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d-------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      +|++++|+|||+ +||+|+.|       +.|+||++..+.......+         .......+.+|...|.+++++  +
T Consensus        16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--~   83 (365)
T 4h5i_A           16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--K   83 (365)
T ss_dssp             CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--T
T ss_pred             CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--C
Confidence            899999999998 78888653       3599999987654322111         111223477899999888765  5


Q ss_pred             CEEEEEe-----------CCCEEEEEEccCCCCccc-eEE-----ecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          409 SLLGVAY-----------SKHIVQLYAYHGGSDARQ-QLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       409 ~~las~~-----------~d~~i~iwd~~~~~~~~~-~~~-----l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +.+++|+           .|+.+++|++.++..... ...     ...+...+.+++|||||+.+.+++++.|++|+|||
T Consensus        84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd  163 (365)
T 4h5i_A           84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID  163 (365)
T ss_dssp             TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred             CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence            5666653           567899999887643211 111     12345568999999999965556777899999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEecCCCEEEEEec
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      +++++++..+. |...|.+++|+  +||.++++++.+ .+++|+..++....  ....+...+.+++|+|+++++++++.
T Consensus       164 ~~~~~~~~~~~-~~~~V~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~  239 (365)
T 4h5i_A          164 PSDLTEKFEIE-TRGEVKDLHFS--TDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL  239 (365)
T ss_dssp             TTTTEEEEEEE-CSSCCCEEEEC--TTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCcEEEEeC-CCCceEEEEEc--cCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence            99999999886 77889999995  477899998855 56666666666544  34456778999999999999999988


Q ss_pred             CCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-eCCCCCCC
Q 001358          550 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE  624 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~  624 (1092)
                      ++.....++.|+...+..    ...+.+|.   ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..|  ...
T Consensus       240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~  314 (365)
T 4h5i_A          240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFA  314 (365)
T ss_dssp             SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSC
T ss_pred             CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCC
Confidence            766666889999877654    23455555   88999999999999999999999999999999998876 444  457


Q ss_pred             CceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          625 NPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       625 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |++++|+|||++||+++.|++|+||+++..
T Consensus       315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999999999754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-32  Score=312.84  Aligned_cols=299  Identities=16%  Similarity=0.231  Sum_probs=247.4

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....+|.+.+.+.++++++.. +++++.|+.|+|||+.+++.....                  ...|...|.+++|+|+
T Consensus        85 ~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~  145 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHD  145 (401)
T ss_dssp             EECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTT
T ss_pred             eeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCC
Confidence            344588777665555444453 566778999999999999876541                  2238899999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC-CCceeEEEecCCc
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGA  486 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~  486 (1092)
                      |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++++.|+.|++||+. .+..+..+.+|..
T Consensus       146 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  218 (401)
T 4aez_A          146 GSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSS  218 (401)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred             CCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence            9999999999999999999986554   678999999999994  45  79999999999999999 5677888999999


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .|.+++|++  ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||..+++
T Consensus       219 ~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~  295 (401)
T 4aez_A          219 EVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGA  295 (401)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCC
T ss_pred             CeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCC
Confidence            999999965  6789999999999999999998888889899999999999998866555432 1237789999999999


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .+..+.. .   ..+.+++|+|+++.+++++  .||.|++||+.++.........++...|.+++|+|++++|++++.||
T Consensus       296 ~~~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg  371 (401)
T 4aez_A          296 RVNTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE  371 (401)
T ss_dssp             EEEEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred             EEEEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            9888864 2   5899999999999999954  89999999999977766654444456799999999999999999999


Q ss_pred             eEEEEECCCCCeeee
Q 001358          645 RIKILETPESNSVDA  659 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~  659 (1092)
                      .|++|++.+++.+..
T Consensus       372 ~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          372 NLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EEEEEECCC------
T ss_pred             cEEEEECCCCccccc
Confidence            999999998866544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.4e-32  Score=299.18  Aligned_cols=252  Identities=13%  Similarity=0.167  Sum_probs=211.8

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC--CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      +..+.+|++.|++++|+|||+ +||+|+.|++|+|||+.++  +.+..                   +.+|.+.|.+++|
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~   61 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW   61 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred             ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence            356789999999999999998 6999999999999999754  33332                   7799999999999


Q ss_pred             CCC--CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCc--ee
Q 001358          405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT  478 (1092)
Q Consensus       405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~  478 (1092)
                      +|+  |++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|++|++||+.++.  ..
T Consensus        62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           62 AHPKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             CCGGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred             cCCCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence            874  899999999999999999987422 22357789999999999998  77  89999999999999998764  24


Q ss_pred             EEEecCCcceEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEecCC--
Q 001358          479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG--  541 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~dg--  541 (1092)
                      ..+.+|...|.+++|++..           ++.+|++|+.|++|++||++...    ....+..|...|.+++|+|++  
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence            6778999999999998752           35799999999999999998766    345678899999999999995  


Q ss_pred             -CEEEEEecCCCCceeEEEEeCCCCe---EEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358          542 -RRLFSCGTSKEGESFLVEWNESEGA---IKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       542 -~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~  608 (1092)
                       ++|++++.    ++.|++||..++.   ....+  ..+   ...|.+++|+|++++|++++.|++|++|+..
T Consensus       219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ceEEEEEEC----CCcEEEEEeCCCCCccceeeeecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence             78999886    6679999988743   11222  233   3789999999999999999999999999976

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-34  Score=324.45  Aligned_cols=289  Identities=12%  Similarity=0.063  Sum_probs=227.1

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCC--CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ++.|.+.|++++|+|||+ +||+|+.|+.|+|||+.++  +.+..                   +.+|...|.+++|+|+
T Consensus         7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~   66 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK   66 (377)
T ss_dssp             EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred             EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence            445667999999999998 7999999999999999987  44432                   6789999999999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc---eeEEEec-
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG-  483 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~~-  483 (1092)
                      +++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+++++   ....+.+ 
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            99999999999999999999874444556788999999999999999  79999999999999999887   4778888 


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCC------------------CCceEEecCCCCceEEEEEecCCCEEE
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      |...|.+++|++  ++.+|++++.||.|++||+..                  ......+ .|...|.+++|+|++++|+
T Consensus       145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA  221 (377)
T ss_dssp             CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred             cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence            999999999965  678999999999999999853                  2233344 7788999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------
Q 001358          546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----------  611 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~----------  611 (1092)
                      +++.    ++.|++||+.+++.    +..+.+|.   ..|.+++|+|+++++++++.++.+ +|+.....          
T Consensus       222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  293 (377)
T 3dwl_C          222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG  293 (377)
T ss_dssp             EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred             EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence            9986    66799999999987    77888877   899999999999999888877666 66554211          


Q ss_pred             -----------------------------eEEEEeC-----------CCCCCCCceEEEccC-CC---EEEEEeCCCeEE
Q 001358          612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK  647 (1092)
Q Consensus       612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~  647 (1092)
                                                   .......           ..+...|.++++.+. +.   .+++++.||.|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~  373 (377)
T 3dwl_C          294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV  373 (377)
T ss_dssp             CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence                                         0000000           014456888886653 33   699999999999


Q ss_pred             EEEC
Q 001358          648 ILET  651 (1092)
Q Consensus       648 iw~~  651 (1092)
                      +||+
T Consensus       374 iWdl  377 (377)
T 3dwl_C          374 LWTL  377 (377)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.5e-32  Score=308.82  Aligned_cols=289  Identities=16%  Similarity=0.256  Sum_probs=244.2

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ..+.|+||+++  +||+|. |++|+|||+.+|+.+....                 +.+|...|++|+|+|||++||+|+
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs  166 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT  166 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence            46789999875  688875 8999999999998776422                 557889999999999999999999


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcceEEEeec
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~  494 (1092)
                      .|++|+|||+++++.+.   .+.+|...+.+++++  +.  ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus       167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            99999999999987555   788999999998875  45  7999999999999998864 5567889999999999985


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEecCCCEE-EEEecCCCCceeEEEEeCCCCeEEE
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l-~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      +  ++.++++++.||.+++|+....+.    ......+...|.+++|+|++..+ ++++.  ..++.|++||+.+++...
T Consensus       240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred             C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence            4  678999999999999999987653    34667788899999999977655 44433  337889999999999998


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      .+..+.    .+.++.|+|+++.+++++  .|+.|+|||+.+++++..+..|.  ..|.+++|+|+|++|++++.|++|+
T Consensus       316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence            887654    789999999999998865  78999999999999999998664  5799999999999999999999999


Q ss_pred             EEECCCCCeeeecc
Q 001358          648 ILETPESNSVDAAG  661 (1092)
Q Consensus       648 iw~~~~~~~~~~~~  661 (1092)
                      +|++.+..+.....
T Consensus       390 iWdv~~~~~~~~~~  403 (420)
T 4gga_A          390 LWRCFELDPARRRE  403 (420)
T ss_dssp             EECCSCSSCC----
T ss_pred             EEECCCCCccchhh
Confidence            99998765544443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-33  Score=311.77  Aligned_cols=317  Identities=11%  Similarity=0.021  Sum_probs=247.7

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      +.-.+.|.+|+|||||+ ++|+++.|++|+  |...++.                      +.+|...|.+++|+|||  
T Consensus        12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg--   64 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE--   64 (588)
T ss_dssp             CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred             hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence            34457999999999998 799999999999  7555532                      45799999999999999  


Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc----
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA----  486 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----  486 (1092)
                           .++.+.+|+.+....+    .+ .|...|.+++|||||+  .|++++.||.|++||.++  ++..+. |..    
T Consensus        65 -----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           65 -----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             -----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             -----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence                 4555555554332212    12 5688999999999999  799999999999999544  667777 766    


Q ss_pred             -ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       487 -~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                       .|.+++|+  +||++|++|+.||+|++||+..+..       ...+    .+|...|.+++|+|||  +++++.    +
T Consensus       130 ~sv~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D  201 (588)
T 2j04_A          130 RTYHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N  201 (588)
T ss_dssp             TCEEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred             ccEEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence             49999995  5789999999999999999998753       3444    5667899999999999  666665    6


Q ss_pred             eeEEEEeCCCCeE---EEEEe-eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          555 SFLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       555 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      +.|++||+.++..   .+++. +|.   ..|.+++|+  ++.+++++ +++|++||+.+++.......  +...+..++|
T Consensus       202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~  273 (588)
T 2j04_A          202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPL  273 (588)
T ss_dssp             CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEE
T ss_pred             CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEe
Confidence            6799999988874   34564 554   789999999  58888887 69999999998877444433  4467999999


Q ss_pred             --ccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358          631 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       631 --s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                        +|++..+++++.+|+ ++|....                +++                      +||+..+++.  |+
T Consensus       274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~  312 (588)
T 2j04_A          274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK  312 (588)
T ss_dssp             TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred             eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence              999999999999999 9999771                222                      4677777775  89


Q ss_pred             ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec
Q 001358          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  754 (1092)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  754 (1092)
                      ++++|+...+..      .  ...+...|.+++|+|||+.+++++.
T Consensus       313 ~v~lW~~~g~~l------~--~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          313 KFKKWSTIWNEF------N--NYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHTTTTTTSS------S--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEECCCCce------e--eeccceEEEEEEECCCCCEEEEEEe
Confidence            999999743221      1  1124567999999999998887764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=9.9e-32  Score=329.96  Aligned_cols=212  Identities=18%  Similarity=0.295  Sum_probs=184.2

Q ss_pred             EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-----ceeEEEecCCcceEEEeecccCCccEEEEEecCC
Q 001358          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG  509 (1092)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg  509 (1092)
                      ..+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++     .....+.+|...|.+++|++  ++.+|++|+.||
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg  452 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDG  452 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTS
T ss_pred             hhcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCC
Confidence            357899999999999998644 8999999999999998763     45678899999999999954  778999999999


Q ss_pred             eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCC
Q 001358          510 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       510 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1092)
                      +|++||+.+......+..|...|.+++|+|++++|++++.    ++.|++||...............|...|.+++|+|+
T Consensus       453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~  528 (694)
T 3dm0_A          453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN  528 (694)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred             cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence            9999999999888899999999999999999999999987    667999998766554443333334488999999998


Q ss_pred             C--CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358          590 K--DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       590 ~--~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      +  ..+++++.|++|++||+.+++....+..|.  ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus       529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            6  579999999999999999999998887664  469999999999999999999999999988653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3e-32  Score=311.26  Aligned_cols=296  Identities=16%  Similarity=0.151  Sum_probs=250.3

Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCceEEEEEecC----C---CEE
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL  544 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~i~~~~~s~d----g---~~l  544 (1092)
                      ...+.+|...|++++|++    .+|++++.||.|++||+....      ....+..|...|.+++|+|+    +   ++|
T Consensus         9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            456679999999999965    599999999999999999887      67788889999999999999    9   999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeE-----EEEEeecccc--CCceEEEEEc----CCCCE-EEEEeCCCeEEEEECCC---
Q 001358          545 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK---  609 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~~~~~----~~~~~-l~~~s~dg~i~iwd~~~---  609 (1092)
                      ++++.    ++.|++||+.+++.     ...+..|..+  ...|.+++|+    |++++ +++++.||.|++||+.+   
T Consensus        85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence            99986    56699999998887     7888877322  3789999999    99999 99999999999999988   


Q ss_pred             ---CceEE-----EEeC-----CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358          610 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       610 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                         ++.+.     .+..     ..+...+.+++|+|++ ++++++.||.|++||+.+++.+..+..              
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------  225 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES--------------  225 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence               66555     5543     3334568999999999 999999999999999875432211110              


Q ss_pred             ccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCC
Q 001358          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG  756 (1092)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  756 (1092)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (397)
T 1sq9_A          226 --------------------------------------------------------------------------------  225 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCC---CCCeeEEEEecCCCEEEEEe-C---CeEEEEE
Q 001358          757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI  829 (1092)
Q Consensus       757 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~v~~~~~s~dg~~l~~~s-d---g~i~iwd  829 (1092)
                                                             .  .+|   ...+.+++|+|++++|++++ |   +.|++||
T Consensus       226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d  264 (397)
T 1sq9_A          226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  264 (397)
T ss_dssp             ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence                                                   0  014   66788999999999999887 6   8999999


Q ss_pred             cCCceeeEEecC-------------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec------cc-----
Q 001358          830 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH-----  885 (1092)
Q Consensus       830 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~------~h-----  885 (1092)
                      +.+++.+..+..             |...|.+++|+| ++++|++++.||.|++||+.+++.+..+.      +|     
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  343 (397)
T 1sq9_A          265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL  343 (397)
T ss_dssp             TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred             CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence            999999999988             999999999999 89999999999999999999999999999      88     


Q ss_pred             ----------cCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcCCC
Q 001358          886 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       886 ----------~~~V~~l~~spdg----------~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                                ...|++++|+|++          ++|++++.||.|++|++.++
T Consensus       344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                      9999999999998          79999999999999999875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.9e-32  Score=309.05  Aligned_cols=347  Identities=14%  Similarity=0.129  Sum_probs=247.5

Q ss_pred             ceeEecccCCCCceEEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .....+.+|.+.|++++|+| +|+ +|++|+.||.|+|||+.+++..........      .........+|...|.+++
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~  106 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETVQ  106 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEEE
T ss_pred             cceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEEE
Confidence            45577889999999999999 998 799999999999999999877654221100      0000001246999999999


Q ss_pred             ECC-CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC---CCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      |+| ++++|++++.|+.|++||+.+++...   .+ .+...+.+++|++.   +.  ++++++.|+.|++||+.+++.+.
T Consensus       107 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          107 WYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             ECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCCE
T ss_pred             EccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcceee
Confidence            999 88899999999999999999986554   33 37778999999884   44  79999999999999999999999


Q ss_pred             EEecCCcceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc-eEEe---------------cCCCCceEEEEEecCCC
Q 001358          480 SFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~dg~  542 (1092)
                      .+.+|...|.+++|++  ++. ++++++.||.|++||++.... ...+               ..+...|.+++|+|+++
T Consensus       181 ~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  258 (408)
T 4a11_B          181 ILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL  258 (408)
T ss_dssp             EECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS
T ss_pred             eecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC
Confidence            9999999999999966  445 699999999999999987652 2222               45677899999999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      +|++++.    ++.|++||+.+++....+.++..  ....+........+..+++++.++.|++||+.+++.+..+..+.
T Consensus       259 ~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  334 (408)
T 4a11_B          259 HLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY  334 (408)
T ss_dssp             EEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred             EEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence            9999986    56699999999887655543321  11222223333445677888889999999999999999998664


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc
Q 001358          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1092)
                        ..|.+++|+|++++|++++.||.|++|++.+.+.+.........   ..+.                     ......
T Consensus       335 --~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~~  388 (408)
T 4a11_B          335 --KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFEDA  388 (408)
T ss_dssp             --SCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------------
T ss_pred             --CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------ccccee
Confidence              46999999999999999999999999999988766544322111   1111                     123445


Q ss_pred             ceeeccccccceecee
Q 001358          701 EISVEAENKSEVEKPL  716 (1092)
Q Consensus       701 l~s~~~d~~i~~w~~~  716 (1092)
                      ..+.+.++.+++|+..
T Consensus       389 ~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          389 WSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ----------------
T ss_pred             ecccCccCceeecCCc
Confidence            5677788999999853

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.1e-32  Score=295.47  Aligned_cols=252  Identities=17%  Similarity=0.299  Sum_probs=213.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  469 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  469 (1092)
                      +.+|...|.+++|+|||++||+|+.|++|+|||+.++.. ....++.+|.++|.+++|+++  ++  +|++|+.|++|++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i   81 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI   81 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence            778999999999999999999999999999999975421 223478899999999999864  77  8999999999999


Q ss_pred             EECCCCc--eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEecC-----
Q 001358          470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN-----  540 (1092)
Q Consensus       470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~d-----  540 (1092)
                      ||+.+++  .+..+.+|...|.+++|++..++.+|++++.||+|++||++....  ...+..|...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9999874  567788999999999998765578999999999999999987642  4567788889999999997     


Q ss_pred             --------CCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCeEEEE
Q 001358          541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW  605 (1092)
Q Consensus       541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iw  605 (1092)
                              +++|++++.    ++.|++||..++.    ....+.+|.   ..|.+++|+|++   .+|++++.|++|++|
T Consensus       162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                    578999886    6679999998765    566777777   899999999984   789999999999999


Q ss_pred             ECCCCc--e-EEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          606 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       606 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      |+.++.  . ...+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            998753  2 22332233445689999999999999999999999999763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-34  Score=317.39  Aligned_cols=330  Identities=10%  Similarity=0.033  Sum_probs=248.8

Q ss_pred             CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      -...|.+++|+|||+++++++.    +++|+  |...++.   +.+|.   ..|.+++|+|+|       .++.+.+|+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~---l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKD---INCNS---KNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSC---CSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             hhccEEEEEECCCCCEEEEEcC----Cceee--cccccce---ecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence            4468899999999999999976    67788  7655544   35766   899999999998       4555555554


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCc
Q 001358          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  687 (1092)
                      +   ....+.... ...|.+++|||+|.+||+++.||.+++|+...  .+..+. |...+                    
T Consensus        75 ~---~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~--------------------  127 (588)
T 2j04_A           75 Q---QNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL--------------------  127 (588)
T ss_dssp             C---SSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred             C---CceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence            3   222232122 45799999999999999999999999999543  222221 11110                    


Q ss_pred             eeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCc
Q 001358          688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1092)
Q Consensus       688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~  767 (1092)
                                                                   ....+.+++|||||+.|++++.||.|++|++..+.
T Consensus       128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A          128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                         12358899999999999999999999999976531


Q ss_pred             cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCcee---eEEe-cCCC
Q 001358          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS  843 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~---~~~~-~~~~  843 (1092)
                      ...         +++      ..+........+|...|.+++|+||| +++++.|+++++||+.+++.   .+++ .+|.
T Consensus       163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            100         000      00122222223588999999999999 55555689999999988774   3566 4788


Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEE--cCCCCEEEEEeCCCcEEEEEcCCCcee
Q 001358          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ  921 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~i~iwd~~~~~~~  921 (1092)
                      ..|.+++|+   ++.||+++ +++|++||+.+++......+|.+.|..++|  +||+..|+++++||+ ++|..+.    
T Consensus       227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----  297 (588)
T 2j04_A          227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----  297 (588)
T ss_dssp             SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred             CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence            899999998   37899887 699999999988874444489999999999  999999999999999 9999872    


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                                          ++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus       298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence                                5699999988875 9999999976554 332 333 77899999999999999876

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1e-30  Score=288.45  Aligned_cols=282  Identities=16%  Similarity=0.268  Sum_probs=237.0

Q ss_pred             ceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       337 V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      .++|+||+++  +||+|. |++|+|||+.+|+.+....                 +.+|...|.+++|+|+|++||+|+.
T Consensus        28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence            5789999987  578774 8999999999998876522                 5578999999999999999999999


Q ss_pred             CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEecCCcceEEEeecc
Q 001358          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      |++|++||+++++.+.   .+.+|...+.++.+  ++.  .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus        88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999987655   67789988887665  455  7999999999999998876 45678889999999999854


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                        ++.++++++.||.|++||+.+.+.    ......+...+..++++|++..++.... +..++.|++||...+......
T Consensus       161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred             --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence              668999999999999999987653    3455667778999999998776553322 134778999999988877665


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001358          572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  649 (1092)
                      ...    ..+..+.|+|+++.+++++  .|+.|++||+.+++++..+..|.  ..|.+++|+|+|++|++++.||+|+||
T Consensus       238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            543    5799999999999988765  79999999999999999998664  579999999999999999999999999


Q ss_pred             ECCCC
Q 001358          650 ETPES  654 (1092)
Q Consensus       650 ~~~~~  654 (1092)
                      |+.+.
T Consensus       312 d~~~~  316 (318)
T 4ggc_A          312 RCFEL  316 (318)
T ss_dssp             CCSCC
T ss_pred             ECCCC
Confidence            98754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.4e-32  Score=305.51  Aligned_cols=290  Identities=12%  Similarity=0.103  Sum_probs=247.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..|..+|.+++|+|||++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            45699999999999999999999999999999999875 113346789999999999999999  899999999999999


Q ss_pred             CCCCceeEEE--ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEecCCCEEE
Q 001358          472 AVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       472 ~~~~~~~~~~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +.+++....+  ..|...|.+++|++  ++.+|++++.||.|++||++....    ......+...|.+++|+|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            9998765443  67999999999965  678999999999999999998774    233356788999999999999999


Q ss_pred             EEecCCCCceeEEEEeC------------------CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      +++.    ++.|++||+                  .+++.+..+.+|.   ..+.+++|+|+++++++++.||.|++||+
T Consensus       159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9986    566999994                  4678888888777   89999999999999999999999999999


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC--CCe-----------------------------
Q 001358          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS-----------------------------  656 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~--~~~-----------------------------  656 (1092)
                      .+++.+..+..+.  ..+.+++|+|++.+++++ .|+.|++|++.+  +..                             
T Consensus       232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence            9999999988663  468999999999988887 899999999987  310                             


Q ss_pred             ----------eeecccccccceeeeecCCcccccccccCCceeecCCCCCCc---ccceeeccccccceeceee
Q 001358          657 ----------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       657 ----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~~w~~~~  717 (1092)
                                .....+|...|.++++.                     +++|   +++++++.||.|++|++..
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence                      11124777888888765                     3566   8999999999999999764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.3e-32  Score=309.79  Aligned_cols=245  Identities=11%  Similarity=0.136  Sum_probs=195.5

Q ss_pred             ccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      +...|.+++|+|+++++++++.||.+++|++.....                      .....+.  +|...|.+++|+|
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------~~~~~~~--~h~~~v~~~~~s~   65 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------KHARTFS--DHDKIVTCVDWAP   65 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------EECCCBC--CCSSCEEEEEECT
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------EEEEEEe--cCCceEEEEEEeC
Confidence            456899999999999999999999999999864310                      0011121  4899999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCce---eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---eeEeecc-
Q 001358          813 NDAYLFSAS-GGVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---VISKLEG-  884 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---~~~~l~~-  884 (1092)
                      ++++|++++ |+.|++||+.+++   ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++   ....+.+ 
T Consensus        66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            999999998 7999999999877   6777888999999999999 89999999999999999999887   4778887 


Q ss_pred             ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCcee-------------eeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001358          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-------------TCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       885 h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      |...|.+++|+|++++|++++.|+.|++||+...+..             ...++... ++..   .|.+++|+|+|++|
T Consensus       145 h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~v~~~~~sp~~~~l  220 (377)
T 3dwl_C          145 LRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---WVHAVGFSPSGNAL  220 (377)
T ss_dssp             CCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---SEEEEEECTTSSCE
T ss_pred             cCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---eEEEEEECCCCCEE
Confidence            9999999999999999999999999999999643211             13344444 4443   79999999999999


Q ss_pred             EE-EeCCcEEEEEcCCcee----eeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          952 LL-VHETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       952 a~-~~d~~v~lwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      ++ +.|+.|++||+.+++.    +.. +.+|...|.+++|+|||++|++++.|+.+ +|+..
T Consensus       221 ~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          221 AYAGHDSSVTIAYPSAPEQPPRALIT-VKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EEEETTTEEC-CEECSTTSCEEECCC-EECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EEEeCCCcEEEEECCCCCCcceeeEe-ecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            98 5789999999999887    444 56799999999999999999998766655 67665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.2e-32  Score=299.14  Aligned_cols=253  Identities=15%  Similarity=0.205  Sum_probs=205.9

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      ..+.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++.....                 ..+.+|...|.+++|+| 
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~   68 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP   68 (316)
T ss_dssp             -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred             eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence            46789999999999999998 699999999999999988753211                 12778999999999987 


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCce---eEE
Q 001358          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS  480 (1092)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~---~~~  480 (1092)
                       ++++||+|+.|++|++||+.++... ....+.+|...|.+++|+|+  +.  +|++|+.|++|++||+.++..   ...
T Consensus        69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~  145 (316)
T 3bg1_A           69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI  145 (316)
T ss_dssp             GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence             4899999999999999999986422 23367899999999999998  66  799999999999999987632   345


Q ss_pred             EecCCcceEEEeecccC---------------CccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEecCC-
Q 001358          481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG-  541 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~---------------~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~dg-  541 (1092)
                      +.+|...|.+++|++..               ++.+|++|+.|++|++||++...   ....+..|...|.+++|+|++ 
T Consensus       146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence            67899999999997652               14689999999999999997553   455678889999999999987 


Q ss_pred             ---CEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001358          542 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1092)
Q Consensus       542 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~  608 (1092)
                         ++|++++.    ++.|++||..+..    ....+..|.   ..|.+++|+|++++|++++.|++|++|+..
T Consensus       226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence               78999886    6789999987631    223445555   899999999999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=311.42  Aligned_cols=301  Identities=13%  Similarity=0.204  Sum_probs=233.1

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC------------CcE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV  399 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~------------~~V  399 (1092)
                      .|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.......        ...-....+.+|.            ..|
T Consensus        26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred             cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence            4577999999999998 799999999999999998763110000        0000112266898            889


Q ss_pred             EEEEECCCC--CEEEEEeCCCEEEEEEccCCCCcc------------------------------------ce-EEeccc
Q 001358          400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQ-LEIDAH  440 (1092)
Q Consensus       400 ~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~-~~l~~h  440 (1092)
                      .+++|+|++  .+|++++.|++|++||+.++....                                    .. ....+|
T Consensus        97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B           97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            999999998  899999999999999998643210                                    00 113689


Q ss_pred             ccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC-CceeE-------EEecCCcceEEEeecccCCc-cEEEEEecCCeE
Q 001358          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI  511 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i  511 (1092)
                      ...|.+++|+|+++  +|++| .|+.|++||+.+ ++.+.       .+.+|...|.+++|++  ++ .+|++++.||.|
T Consensus       177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred             CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence            99999999999999  78888 799999999984 44444       2568999999999965  55 799999999999


Q ss_pred             EEEEcCCCCc----eEEecCCCC------------ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-CeEEEEEeec
Q 001358          512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL  574 (1092)
Q Consensus       512 ~vwd~~~~~~----~~~~~~~~~------------~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~  574 (1092)
                      ++||+++...    ...+..+..            .|.+++|+|+|++|++++.     +.|++||+.+ ++.+..+.+|
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence            9999998876    667777765            8999999999999998863     5799999997 8888888887


Q ss_pred             cccCC------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----------------------
Q 001358          575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------  619 (1092)
Q Consensus       575 ~~~~~------------~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------  619 (1092)
                      .....            .+..++|+|++++|++|+.||.|++||+.+++.+......                       
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            62111            1334899999999999999999999999998876422111                       


Q ss_pred             -------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       620 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                             .....|..++|+|++++||+++.++ +++|...
T Consensus       407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                   1123578899999999999998875 7777643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-31  Score=302.15  Aligned_cols=294  Identities=17%  Similarity=0.223  Sum_probs=245.1

Q ss_pred             eeecCCCCcEEEEEECCC----CCEEEEEeCCCEEEEEEccCCCCccceEEec--ccccceeEEEeeCC----CCcEEEE
Q 001358          390 ALVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVI  459 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d----~~~l~l~  459 (1092)
                      .+..+|...|.+++|+|+    ...+++++.++.|++||+.+++.+.......  .|...|.+++|+|+    ++  +|+
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~   89 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLA   89 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEE
Confidence            346689999999999994    4566666677799999999887665443332  26688999999999    55  799


Q ss_pred             EEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEE
Q 001358          460 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMA  536 (1092)
Q Consensus       460 s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~  536 (1092)
                      +|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+   ..+...|.+++
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  168 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD  168 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence            9999999999999999999999999999999999652 5679999999999999999998887777   67888999999


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee-------------------------ccccCCceEEEEEcCCCC
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~  591 (1092)
                      |+|++++|++++.    ++.|++||+.+++....+..                         ...+...|.+++|+  ++
T Consensus       169 ~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  242 (366)
T 3k26_A          169 YDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD  242 (366)
T ss_dssp             ECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred             ECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence            9999999999986    56699999998765543332                         00133889999998  67


Q ss_pred             EEEEEeCCCeEEEEECCCCce--------------EEEEeCCCCCCCCceEEEccC--CCEEEEEeCCCeEEEEECCCCC
Q 001358          592 QILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ++++++.|+.|++||+.++..              +..+..+  ...|.+++|+|+  +++|++++.||.|++|++.+++
T Consensus       243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            999999999999999987754              5666655  346899999999  9999999999999999999875


Q ss_pred             ee----eecccc--cccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          656 SV----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       656 ~~----~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      ..    ..+.+|  ...|.+++|+                      |+++++++++.|+.|++||+.
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          321 PHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             GGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred             CccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence            43    366666  6888888886                      788999999999999999964

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.9e-31  Score=298.16  Aligned_cols=293  Identities=13%  Similarity=0.164  Sum_probs=241.0

Q ss_pred             eeecCCCCcEEEEEECCCCCEEE-EEeC---CCEEEEEEccCCCCccceEEecccccceeEEEeeCC---CCcEEEEEEe
Q 001358          390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG  462 (1092)
Q Consensus       390 ~~l~~h~~~V~~l~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~l~l~s~~  462 (1092)
                      .++.+|...|.+++|+|++..++ +|+.   |+.|++||+.+++....  ...+|...|.+++|+|+   ++  +|++|+
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~   87 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD   87 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence            34678999999999999997655 5554   89999999998764432  23379999999999999   57  799999


Q ss_pred             CCCcEEEEECCCCc-eeEEEecCCcceEEEeecc----cCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC----ce
Q 001358          463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC  532 (1092)
Q Consensus       463 ~d~~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i  532 (1092)
                      .|+.|++||+.+++ .+..+.+|...|.+++|.+    ++++.+|++++.||.|++||+.... ....+..+..    .+
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            99999999999998 8899999999999997643    5678899999999999999999887 5666655443    78


Q ss_pred             EEEE----EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC---CCCEEEEEeCCCeEEEE
Q 001358          533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       533 ~~~~----~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~s~dg~i~iw  605 (1092)
                      .+++    |+|+++++++++.    ++.|++||+.+++.... ..+.   ..|.+++|+|   +++++++++.||.|++|
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            8888    7889999999986    66799999999987544 4444   7899999999   99999999999999999


Q ss_pred             ECCCCceEEEEe---CCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC-------------------Ceeeeccc
Q 001358          606 DMNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGV  662 (1092)
Q Consensus       606 d~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~  662 (1092)
                      |+.+++....+.   ...+...|.+++|+|+++ ++++++.||.|++|++..+                   +.+..+.+
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence            998766544332   112345799999999998 8999999999999998754                   24556777


Q ss_pred             ccccceeeeecCCcccccccccCCceeecCCCCCCcccce-eeccccccceecee
Q 001358          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL  716 (1092)
Q Consensus       663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~~w~~~  716 (1092)
                      |...|.+++|+                      |+++.++ +++.|+.+++|++.
T Consensus       320 ~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          320 STQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             CSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence            88888888886                      7788888 89999999999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-30  Score=286.47  Aligned_cols=281  Identities=15%  Similarity=0.174  Sum_probs=247.0

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      .+.+|...|.+++| |++++|++++.||.|++||+.+++...   .+..|...|.+++|+|+++  ++++++.|+.|++|
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~   86 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV   86 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence            37899999999999 999999999999999999998875444   5678999999999999999  89999999999999


Q ss_pred             ECCCC---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEec-CCCEEEE
Q 001358          471 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS  546 (1092)
Q Consensus       471 d~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~  546 (1092)
                      ++...   +.+..+.+|...|.+++|    ++.++++++.||.|++||  .......+..+...+.+++++| +++++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            98754   667888999999999998    346999999999999999  5666777888999999999998 9999999


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEee-ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      ++.    ++.|++||  .++....+.. +.   ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.  ..+
T Consensus       161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i  228 (313)
T 3odt_A          161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFV  228 (313)
T ss_dssp             EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCE
T ss_pred             EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceE
Confidence            986    56699999  5666677776 44   8899999999987 9999999999999999999999988664  469


Q ss_pred             ceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeec
Q 001358          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1092)
                      .+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++                      |+++ +++++
T Consensus       229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~  284 (313)
T 3odt_A          229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGS  284 (313)
T ss_dssp             EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEE
T ss_pred             EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEe
Confidence            999999999 58899999999999999999999999999999999886                      5666 66789


Q ss_pred             cccccceeceeecc
Q 001358          706 AENKSEVEKPLFAR  719 (1092)
Q Consensus       706 ~d~~i~~w~~~~~~  719 (1092)
                      .|+.+++|++....
T Consensus       285 ~dg~i~iw~~~~~~  298 (313)
T 3odt_A          285 SDNLVRIFSQEKSR  298 (313)
T ss_dssp             TTSCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCCc
Confidence            99999999987543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.3e-31  Score=295.74  Aligned_cols=287  Identities=9%  Similarity=0.053  Sum_probs=242.4

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....+|.+.|++++|+|+++ +|++|+.|+.|+|||+.++......                ..+.+|...|.+++|+|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~   67 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN   67 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred             ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence            44568999999999999998 6899999999999999988722110                014479999999999999


Q ss_pred             CC-EEEEEeCCCEEEEEEc-cCCCCccceEEecc--cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC---------
Q 001358          408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---------  474 (1092)
Q Consensus       408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---------  474 (1092)
                      ++ +|++|+.||.|++||+ .+++.    ..+.+  |...|.+++|+| ++  .+++++.|+.|++||+.+         
T Consensus        68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence            99 9999999999999999 87643    36778  999999999999 77  899999999999999988         


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCc--eEEecCCCCceEEEEEec-CCCEEEEEecC
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS  550 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~  550 (1092)
                      ++++..+. |...|.+++|++  ++  +++++.||.|++||++. ...  ......+...+.+++|+| +++++++++. 
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-  214 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-  214 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred             CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence            77777776 889999999964  43  99999999999999988 443  335556777899999999 9999999986 


Q ss_pred             CCCceeEEEEeCCCC------eEEEEEeeccc------cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358          551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                         ++.|++|+...+      +....+..|..      +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus       215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence               667999999887      77788888751      124899999999999999999999999999999999888875


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCCCe-EEEEE
Q 001358          619 GGGLPENPRICFNKNGTLLAVIANENR-IKILE  650 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~  650 (1092)
                      +. ...|.+++  |++++|++++.||. .+.+.
T Consensus       292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence            51 24588888  99999999999998 55444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.1e-31  Score=296.33  Aligned_cols=294  Identities=17%  Similarity=0.207  Sum_probs=242.5

Q ss_pred             CCcceeEecccCCCCceEEeecCC---CceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCC
Q 001358          322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1092)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~  397 (1092)
                      .|...+..+.+|.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ +..+..                  .+.+|..
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~   87 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG   87 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence            456677899999999999999999   56 799999999999999998 443311                  2667999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEe--eCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~--s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      .|.+++|+|++++|++++.|+.|++||+.+++.+.    +.+|...|.+++|  +|+++  ++++++.|+.|++||+.++
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence            99999999999999999999999999999876443    5679999999999  88888  8999999999999999999


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEecCCCE----EEEEec
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT  549 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~----l~~~~~  549 (1092)
                      +.+..+..+. .+.++.+.    ...+++++.++.+++|+++.........  .....+..+++.++...    +++++.
T Consensus       162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            9999998765 55566553    2478999999999999998766544332  23446677777776654    888875


Q ss_pred             CCCCceeEEEEeCCCC---eEEEEEeecccc---------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                          ++.|++||....   ..+..+.+|...         ...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus       237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE  312 (368)
T ss_dssp             ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence                677999999987   556677776610         1169999999999999999999999999999999998887


Q ss_pred             CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      .+.  ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus       313 ~~~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          313 QLD--QPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CCS--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CCC--CCceEEEECCCCCeEEEEecccccccccc
Confidence            653  46999999999999999999875555443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9e-31  Score=302.37  Aligned_cols=280  Identities=21%  Similarity=0.311  Sum_probs=241.6

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      ....+|...|.|++|  |++ ++++|+.||+|++||+.+++.+..                   +.+|...|.+++|  +
T Consensus       127 ~~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~  182 (435)
T 1p22_A          127 HCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--D  182 (435)
T ss_dssp             ECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--C
T ss_pred             ecccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--C
Confidence            344567778999887  777 699999999999999999987765                   7789999999999  8


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee---EEEecC
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGH  484 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---~~~~~~  484 (1092)
                      +++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  .  .+++|+.|+.|++||+.+++..   ..+.+|
T Consensus       183 ~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          183 ERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            9999999999999999999987554   6789999999999974  4  7999999999999999988766   677899


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ...|.++++    ++.++++++.||.|++||+++.+....+..+...+.++.+  +++++++++.    ++.|++||..+
T Consensus       256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~  325 (435)
T 1p22_A          256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIEC  325 (435)
T ss_dssp             SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred             CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence            999999988    5579999999999999999999999999999999999988  4789999886    66799999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEeCCCCCCCCceEEEccCCC
Q 001358          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGT  635 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~  635 (1092)
                      ++.+..+.+|.   ..|.+++|  ++.++++|+.||.|++||+.++.         .+..+..|.  ..|.+++|  ++.
T Consensus       326 ~~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~--~~~  396 (435)
T 1p22_A          326 GACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQF--DEF  396 (435)
T ss_dssp             CCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEE--CSS
T ss_pred             CCEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC--CCeEEEEe--CCC
Confidence            99999999887   88999998  67899999999999999997766         777776554  46899999  788


Q ss_pred             EEEEEeCCCeEEEEECCCCCee
Q 001358          636 LLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                      ++++++.||.|++||+.+....
T Consensus       397 ~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          397 QIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CEEECCSSSEEEEEC-------
T ss_pred             EEEEEeCCCEEEEEECCCCCCc
Confidence            9999999999999999876443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-30  Score=299.81  Aligned_cols=281  Identities=19%  Similarity=0.237  Sum_probs=242.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      ..+.|+||++ ++||+|. |++|+|||..+|+..... .+.+|...|++++|+|||+  +|++|+.|++|+|||+++++.
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence            4677999986 5788775 899999999999765432 4567888999999999999  899999999999999999999


Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      +..+.+|...+.++++    ++.+|++|+.|+.+++||...... ...+..|...+..+.++|+++++++++.    ++.
T Consensus       182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~  253 (420)
T 4gga_A          182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL  253 (420)
T ss_dssp             EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred             EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence            9999999999999877    446999999999999999987554 4577889999999999999999999986    667


Q ss_pred             EEEEeCCCCeE----EEEEeeccccCCceEEEEEcCCCCEE-EE--EeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358          557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                      +++|+..+++.    +.....|.   ..|.+++|+|.+..+ ++  |+.|++|++||+.+++....+..+.   .+.++.
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~  327 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL  327 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred             ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence            99999987753    34455555   899999999987554 44  3579999999999999999887653   488999


Q ss_pred             EccCCCEEEEEe--CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       630 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      |+|+++.+++++  .|+.|+|||+.+++.+..+.+|...|.+++|+                      |||+++++++.|
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D  385 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD  385 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence            999999998876  68999999999999999999999999999996                      789999999999


Q ss_pred             cccceeceeecc
Q 001358          708 NKSEVEKPLFAR  719 (1092)
Q Consensus       708 ~~i~~w~~~~~~  719 (1092)
                      ++|++|++....
T Consensus       386 ~tvriWdv~~~~  397 (420)
T 4gga_A          386 ETLRLWRCFELD  397 (420)
T ss_dssp             TEEEEECCSCSS
T ss_pred             CeEEEEECCCCC
Confidence            999999976443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.2e-30  Score=298.22  Aligned_cols=298  Identities=13%  Similarity=0.169  Sum_probs=241.9

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-CCCEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV  413 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las  413 (1092)
                      ....+++++|+...++++|+.||.|+||++........ .              ...+.+|...|.+++|+| ++++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~-~--------------~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK-N--------------VPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT-T--------------CCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC-C--------------CceEecCCCCEEEEEeCCCCCCEEEE
Confidence            35667999999876777789999999999966432210 0              012678999999999999 9999999


Q ss_pred             EeCCCEEEEEEccCCCCc----cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE--ecCCcc
Q 001358          414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP  487 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~--~~~~~~  487 (1092)
                      |+.||+|+|||+.++...    .....+.+|...|.+++|+|+++. +|++++.|+.|++||+.+++.+..+  .+|...
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence            999999999999987432    233468899999999999999843 7999999999999999999999999  889999


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCc-eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      |.+++|++  ++.+|++++.||.|++||+++.+....+ ..+... +..++|+|++++++++.. +..++.|++||..++
T Consensus       179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL  255 (402)
T ss_dssp             EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred             eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence            99999965  7789999999999999999998888777 566654 899999999999888732 123788999999987


Q ss_pred             eE-EEEEeeccccCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce-EEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          566 AI-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       566 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      +. +......  +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++  .
T Consensus       256 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~  331 (402)
T 2aq5_A          256 EEPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K  331 (402)
T ss_dssp             SSCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred             cCCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence            65 3333321  1367999999999999975 55799999999999884 555544444467999999999998764  5


Q ss_pred             CCeEEEEECCCCC
Q 001358          643 ENRIKILETPESN  655 (1092)
Q Consensus       643 dg~i~iw~~~~~~  655 (1092)
                      ++.+++|++.++.
T Consensus       332 ~~~~~~~~l~~~~  344 (402)
T 2aq5_A          332 CEIARFYKLHERK  344 (402)
T ss_dssp             TEEEEEEEEETTE
T ss_pred             ceeEEEEEcCCCc
Confidence            6799999998763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=2.6e-31  Score=291.84  Aligned_cols=251  Identities=18%  Similarity=0.318  Sum_probs=205.6

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~  468 (1092)
                      ++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++  ++  +|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            36789999999999999999999999999999999886421 23468899999999999863  77  799999999999


Q ss_pred             EEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEecC---
Q 001358          469 VWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN---  540 (1092)
Q Consensus       469 vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~d---  540 (1092)
                      +||++++  +.+..+.+|...|.+++|++..++.+|++++.||+|++||+.....   ...+..|...+.+++|+|+   
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            9999987  4667888999999999998876688999999999999999987643   2345667778999999998   


Q ss_pred             --------------CCEEEEEecCCCCceeEEEEeCCCC---eEEEEEeeccccCCceEEEEEcCCC----CEEEEEeCC
Q 001358          541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD  599 (1092)
Q Consensus       541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~s~d  599 (1092)
                                    +++|++++.    ++.|++||...+   +.+..+.+|.   ..|.+++|+|++    .+|++++.|
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence                          468888875    667999999765   4566777777   899999999986    789999999


Q ss_pred             CeEEEEECCCCc----eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          600 HVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       600 g~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ++|++|++.+..    ....+..+  ...|.+++|+|++++|++++.|+.|++|+...
T Consensus       238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            999999987631    11223322  34689999999999999999999999999763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=7.2e-30  Score=285.69  Aligned_cols=264  Identities=10%  Similarity=0.117  Sum_probs=222.3

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      ..+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++......               ...+.+|...|.+++|+| 
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~   68 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASP   68 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCG
T ss_pred             ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCC
Confidence            56789999999999999998 6899999999999999987543211               112678999999999999 


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCCCc------cceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCce
Q 001358          407 -DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~------~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                       |+++|++++.|+.|++||+.+++..      .....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.+++.
T Consensus        69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTC
T ss_pred             CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHH
Confidence             6999999999999999999987431      334567899999999999999  88  899999999999999998876


Q ss_pred             eEEEe-------------cCCcceEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEecCC
Q 001358          478 TYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG  541 (1092)
Q Consensus       478 ~~~~~-------------~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg  541 (1092)
                      +..+.             +|...+.+++|++. .++.++++++.++.+.+|+......  ...+..|...|.+++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI  226 (351)
T ss_dssp             TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred             hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence            65443             57888999999764 1367999999999998888777665  55677788899999999998


Q ss_pred             ----CEEEEEecCCCCceeEEEEeCCCC----------------------------------------------eEEEEE
Q 001358          542 ----RRLFSCGTSKEGESFLVEWNESEG----------------------------------------------AIKRTY  571 (1092)
Q Consensus       542 ----~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~~  571 (1092)
                          ++|++++.    ++.|++||+.++                                              +.+..+
T Consensus       227 ~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (351)
T 3f3f_A          227 GRWYQLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH  302 (351)
T ss_dssp             SCSSEEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE
T ss_pred             CCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE
Confidence                78999886    667999999875                                              555666


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001358          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      .+|.   ..|.+++|+|++++|++++.||.|++|++.+++....+
T Consensus       303 ~~h~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          303 DDHN---GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CTTS---SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             eccc---ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            6666   89999999999999999999999999999988766554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.5e-30  Score=293.00  Aligned_cols=285  Identities=15%  Similarity=0.156  Sum_probs=242.2

Q ss_pred             ecCCCCc--EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          392 VRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       392 l~~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ..+|...  +.+++|++  ..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i  160 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDI  160 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence            3355554  45566664  56888889999999999998755422  223889999999999999  8999999999999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      ||+.+++.+..+.+|...|.+++|    ++.++++++.||.|++||++. ......+..|...|.+++|+|+++++++++
T Consensus       161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            999999999999999999999998    346999999999999999994 555667888999999999999999999998


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-Ee--CCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      .    ++.|++||+.+++.+..+..|.   ..|.+++|+|++..+++ ++  .|+.|++||+.+++.+..+..+   ..+
T Consensus       237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v  306 (401)
T 4aez_A          237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQV  306 (401)
T ss_dssp             T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCE
T ss_pred             C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcE
Confidence            6    5679999999999999888877   89999999998765554 44  6999999999999999888754   358


Q ss_pred             ceEEEccCCCEEEEEe--CCCeEEEEECCCCCeee--ecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       626 ~~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      .+++|+|+++++++++  .||.|++|++.++....  .+.+|...+.+++++                      |+++++
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l  364 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRIL  364 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEE
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEE
Confidence            9999999999999954  89999999999865444  456888889888886                      789999


Q ss_pred             eeeccccccceeceeec
Q 001358          702 ISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~  718 (1092)
                      ++++.|+.+++|++..+
T Consensus       365 ~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          365 STAASDENLKFWRVYDG  381 (401)
T ss_dssp             EEECTTSEEEEEECCC-
T ss_pred             EEEeCCCcEEEEECCCC
Confidence            99999999999998743

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.7e-30  Score=298.25  Aligned_cols=253  Identities=14%  Similarity=0.227  Sum_probs=208.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC--------ccceEEecccc------------cceeEEEeeCCC-
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC-  453 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~~~~s~d~-  453 (1092)
                      |.+.|.+++|+|+|++||+|+.||.|+|||+.+++.        ......+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            678999999999999999999999999999998752        11344678998            889999999998 


Q ss_pred             -CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------EE-EecCCcceEEEe
Q 001358          454 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC  492 (1092)
Q Consensus       454 -~~l~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v~~i~  492 (1092)
                       .  .+++++.|++|++||+.++...                                       .. ..+|...|.+++
T Consensus       107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence             5  7999999999999998765432                                       12 367999999999


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCceEEEEEecCC-CEEEEEecCCCCceeEEEEeCC
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |++  ++.+|+++ .||.|++||++.......        +..|...|.+++|+|++ ++|++++.    ++.|++||+.
T Consensus       185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~  257 (447)
T 3dw8_B          185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR  257 (447)
T ss_dssp             ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred             EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence            965  67899998 799999999985443332        55778899999999999 89999986    5679999999


Q ss_pred             CCeE----EEEEeeccc---------cCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCC-----
Q 001358          564 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE-----  624 (1092)
Q Consensus       564 ~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~-----  624 (1092)
                      +++.    +..+.++..         +...|.+++|+|+++++++++. +.|++||+.+ ++.+..+..+.....     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence            9887    677877660         0128999999999999999999 9999999997 888888876643111     


Q ss_pred             --------CceEEEccCCCEEEEEeCCCeEEEEECCCCCee
Q 001358          625 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       625 --------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                              +..++|+|++++|++++.||.|++||+.+++.+
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                    234999999999999999999999999988665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=278.41  Aligned_cols=277  Identities=19%  Similarity=0.252  Sum_probs=236.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      .++|+||+++ +||+| .|++|+|||+++++.++.. .+.+|...|++++|+|+++  ++++|+.|++|++||+++++.+
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence            5679999986 77776 5899999999999866533 4567888999999999999  8999999999999999999999


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ..+.+|...+.++.+    ++..+++++.++.+++|+...... ...+..|...+..+.++++++++++++.    ++.|
T Consensus       103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i  174 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV  174 (318)
T ss_dssp             EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred             EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence            999999999988765    346899999999999999887654 4567888899999999999999999986    6679


Q ss_pred             EEEeCCCCeEE----EEEeeccccCCceEEEEEcCCCCEEE---EEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      ++||..+++..    .....+   ...|.++.++|++..++   +++.+++|++||.............   ..+..++|
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~  248 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQH---QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW  248 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCC---CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred             eEEECCCCcccccceeeeccc---CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence            99999887643    233333   37899999999876554   4668899999999998887776544   34889999


Q ss_pred             ccCCCEEEEEe--CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358          631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       631 s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                      +|++..+++++  .|+.|++||+.+++.+..+.+|...|.+++|+                      ||++++++++.|+
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~  306 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE  306 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence            99999888765  68999999999999999999999999999996                      7899999999999


Q ss_pred             ccceecee
Q 001358          709 KSEVEKPL  716 (1092)
Q Consensus       709 ~i~~w~~~  716 (1092)
                      +|++||+.
T Consensus       307 ~v~iWd~~  314 (318)
T 4ggc_A          307 TLRLWRCF  314 (318)
T ss_dssp             EEEEECCS
T ss_pred             eEEEEECC
Confidence            99999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.7e-30  Score=289.21  Aligned_cols=255  Identities=17%  Similarity=0.302  Sum_probs=217.7

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  469 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v  469 (1092)
                      +.+|...|.+++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++  ++  +|++++.|+.|++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i   83 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI   83 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence            77899999999999999999999999999999998432 2333468899999999999987  77  8999999999999


Q ss_pred             EECCCCc--eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEec------
Q 001358          470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------  539 (1092)
Q Consensus       470 wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~------  539 (1092)
                      ||+.+++  .+..+.+|...|.+++|++..++.+|++++.||.|++||+....  ....+..+...|.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999997  77888899999999999776437899999999999999998874  4456677888999999999      


Q ss_pred             -------CCCEEEEEecCCCCceeEEEEeCCCCe----EEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCeEEEE
Q 001358          540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW  605 (1092)
Q Consensus       540 -------dg~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~iw  605 (1092)
                             ++.++++++.    ++.|++||+.++.    ....+.+|.   ..|.+++|+|+   ++++++++.||.|++|
T Consensus       164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence                   6999999986    5569999998764    445566666   89999999999   8999999999999999


Q ss_pred             ECCCCc---eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCe
Q 001358          606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1092)
Q Consensus       606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~  656 (1092)
                      |+.++.   .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  290 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK  290 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence            999875   333333333456789999999999999999999999999885543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.7e-30  Score=289.69  Aligned_cols=263  Identities=13%  Similarity=0.151  Sum_probs=216.6

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      +..++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.....                 ..+.+|...|.+++|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~   64 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWA   64 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEEC
T ss_pred             ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceee-----------------eEecCCCCcEEEEEeC
Confidence            4577899999999999999998 689999999999999984332211                 1277899999999999


Q ss_pred             CC--CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCCc--eeE
Q 001358          406 PD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTY  479 (1092)
Q Consensus       406 pd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~  479 (1092)
                      |+  +++|++++.|+.|++||+.+++.. ....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  ...
T Consensus        65 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~  141 (379)
T 3jrp_A           65 HPKFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPI  141 (379)
T ss_dssp             CGGGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEE
T ss_pred             CCCCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeE
Confidence            87  999999999999999999987521 23367789999999999999  88  89999999999999999874  445


Q ss_pred             EEecCCcceEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEecC---C
Q 001358          480 SFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---G  541 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~d---g  541 (1092)
                      .+.+|...|.+++|++..           ++.++++++.||.|++||++.....    ..+..|...|.+++|+|+   +
T Consensus       142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            677899999999997742           5789999999999999999876543    466778899999999999   8


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE
Q 001358          542 RRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~  613 (1092)
                      ++|++++.    ++.|++||+.++...  ........+...|.+++|+|+++++++++.||.|++|++..+...
T Consensus       222 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          222 SYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             CeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            99999986    566999999887421  112121123478999999999999999999999999999855433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.8e-29  Score=291.49  Aligned_cols=274  Identities=16%  Similarity=0.243  Sum_probs=238.9

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      .+|...|.+++|  |+++|++|+.||.|++||+.+++...   .+.+|.+.|.+++|  +++  ++++|+.||+|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence            357778998887  89999999999999999999987554   68899999999999  677  8999999999999999


Q ss_pred             CCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEecCCCEEEEEec
Q 001358          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      .+++.+..+.+|...|.+++|+    +.++++++.||.|++||+.+....   ..+..+...|.++++  +++++++++.
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9999999999999999999984    359999999999999999987765   567788889999998  7889999986


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          ++.|++||+.+++.+..+.+|.   ..|.++.++  ++++++|+.||.|++||+.+++.+..+..+.  ..|.+++
T Consensus       275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~  343 (435)
T 1p22_A          275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR  343 (435)
T ss_dssp             ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred             ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence                6779999999999999999887   889999984  6799999999999999999999999988654  4588888


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCC---------eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCccc
Q 001358          630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1092)
                      |  ++.++++++.||.|++||+.++.         .+..+.+|...|.++++.                        ++.
T Consensus       344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~  397 (435)
T 1p22_A          344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ  397 (435)
T ss_dssp             C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred             e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence            8  78999999999999999987655         677778888888777663                        678


Q ss_pred             ceeeccccccceeceeec
Q 001358          701 EISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       701 l~s~~~d~~i~~w~~~~~  718 (1092)
                      +++++.||.|++||+...
T Consensus       398 l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          398 IVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEECCSSSEEEEEC----
T ss_pred             EEEEeCCCEEEEEECCCC
Confidence            999999999999998754

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=285.59  Aligned_cols=290  Identities=17%  Similarity=0.152  Sum_probs=238.7

Q ss_pred             ecCCCCcEEEEEECCC---CCEEEEEeCCCEEEEEEccC-CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcE
Q 001358          392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1092)
Q Consensus       392 l~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i  467 (1092)
                      +.+|...|.+++|+|+   |++|++|+.||.|++||+.+ +..+  ...+.+|...|.+++|+|+++  +|++++.|+.|
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v  110 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA  110 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence            7789999999999999   69999999999999999997 4322  135778999999999999999  89999999999


Q ss_pred             EEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       468 ~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+  ..++++
T Consensus       111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~  186 (368)
T 3mmy_A          111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA  186 (368)
T ss_dssp             EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred             EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence            999999998776 5579999999999777788999999999999999999988887777655 555555554  466666


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE----EEEEeCCCeEEEEECCCC---ceEEEEeCCC
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG  620 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~s~dg~i~iwd~~~~---~~~~~~~~~~  620 (1092)
                      +.    ++.+.+|+.............. ....+.++.+.++...    +++++.||.|++|++...   .....+..+.
T Consensus       187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  261 (368)
T 3mmy_A          187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR  261 (368)
T ss_dssp             EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred             eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence            65    5569999998765443322211 2345666666665554    999999999999999987   4556665543


Q ss_pred             CC----------CCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceee
Q 001358          621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1092)
Q Consensus       621 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  690 (1092)
                      ..          ..|.+++|+|++++|++++.||.|++||+.+++.+..+.+|...+.+++|+                 
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------------  324 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN-----------------  324 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence            21          158999999999999999999999999999999999999999999999996                 


Q ss_pred             cCCCCCCcccceeeccccccceecee
Q 001358          691 NEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                           |+++++++++.|+..+.|++.
T Consensus       325 -----~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          325 -----HNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             -----TTSSCEEEEECCCSTTCGGGC
T ss_pred             -----CCCCeEEEEeccccccccccc
Confidence                 789999999999887777644

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.4e-29  Score=281.34  Aligned_cols=259  Identities=13%  Similarity=0.206  Sum_probs=218.3

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc-cceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI  467 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i  467 (1092)
                      ++.+|...|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+|  |++  +|++++.|+.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            47899999999999999999999999999999999976432 33446789999999999999  588  89999999999


Q ss_pred             EEEECCCC---------ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001358          468 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------  526 (1092)
Q Consensus       468 ~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------  526 (1092)
                      ++||+.++         +.+..+.+|...|.+++|++..++.++++++.||.|++||+++.+....+.            
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  163 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP  163 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence            99999987         567888999999999999775337899999999999999998776543221            


Q ss_pred             -CCCCceEEEEEecC---CCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCC----CEEEEE
Q 001358          527 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA  596 (1092)
Q Consensus       527 -~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~  596 (1092)
                       .+...+.+++|+|+   +.++++++.    ++.+.+|+...+..  +..+.+|.   ..|.+++|+|++    ++++++
T Consensus       164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~  236 (351)
T 3f3f_A          164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG  236 (351)
T ss_dssp             SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred             CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence             45668999999997   899999876    66688888777765  55666666   899999999998    799999


Q ss_pred             eCCCeEEEEECCCC----------------------------------------------ceEEEEeCCCCCCCCceEEE
Q 001358          597 GDDHVIKIWDMNKV----------------------------------------------QLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       597 s~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      +.||.|++||+.++                                              +.+..+..|  ...|.+++|
T Consensus       237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~  314 (351)
T 3f3f_A          237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSW  314 (351)
T ss_dssp             ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEE
T ss_pred             cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEE
Confidence            99999999999875                                              444555544  456999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEECCCCCeeeec
Q 001358          631 NKNGTLLAVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      +|++++|++++.||.|++|++.++..+..+
T Consensus       315 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          315 NLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             CSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             cCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            999999999999999999999987655544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.2e-29  Score=281.01  Aligned_cols=285  Identities=10%  Similarity=-0.001  Sum_probs=240.0

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|.+.|.+++|+|++++|++++.|+.|++||+.++........+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence            5579999999999999999999999999999999987633233356689999999999999872 388899999999999


Q ss_pred             C-CCCceeEEEec--CCcceEEEeecccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCceEEEEEec
Q 001358          472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA  539 (1092)
Q Consensus       472 ~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~s~  539 (1092)
                      + .+++. ..+.+  |...|.+++|++   +.++++++.||.|++||+++         .+....+. +...+.+++|+|
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            9 77755 77888  999999999976   57999999999999999987         55555555 777899999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----
Q 001358          540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV-----  610 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~~-----  610 (1092)
                      ++  +++++.    ++.|++||+.+ +..  ......+.   ..+.+++|+| +++++++++.||.|++|++...     
T Consensus       161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            88  777765    66799999988 553  22333333   7899999999 9999999999999999999887     


Q ss_pred             -ceEEEEeCCCC-------CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccc-cccceeeeecCCcccccc
Q 001358          611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       611 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~  681 (1092)
                       +....+..+..       ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++  |       
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-------  302 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-------  302 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence             77777776643       337899999999999999999999999999999999999888 88887766  2       


Q ss_pred             cccCCceeecCCCCCCcccceeeccccc-cceece
Q 001358          682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP  715 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~~w~~  715 (1092)
                                     +++++++++.|+. .+.+..
T Consensus       303 ---------------~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          303 ---------------SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred             ---------------CCCeEEEEecCCcccccccc
Confidence                           5788999999998 777664

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=283.92  Aligned_cols=305  Identities=11%  Similarity=-0.003  Sum_probs=234.1

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCC---ceeeeeeee---eeccc---------------------------
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKV---WDIGA---------------------------  382 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~---~~~~~~~~~---~d~~~---------------------------  382 (1092)
                      ++.+++|+|||+ +|+++ .++.|++||+.+|+   .+.......   +....                           
T Consensus         6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            899999999999 56555 46899999999998   443321100   00000                           


Q ss_pred             -----ccceeEEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEcc--CCCCccceEEecccccceeEEEeeCCCC
Q 001358          383 -----CSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPCK  454 (1092)
Q Consensus       383 -----~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~v~~~~~s~d~~  454 (1092)
                           ...........+|...|.+++|+|+|++| |+++.|+.|+|||+.  +++.+.... ...|...|.+++|+|+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCC
Confidence                 00000111234677789999999999996 889999999999999  776655321 125778999999999999


Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeE----EEecCCcceEEEeeccc-CCccEEEEEecCCeEEEEEcCCCCceEE-ecCC
Q 001358          455 QISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD-YDAP  528 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~i~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~  528 (1092)
                        +|++|+.|+.|++|++.+++...    .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+...... +..|
T Consensus       163 --~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h  240 (450)
T 2vdu_B          163 --TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH  240 (450)
T ss_dssp             --EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred             --EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence              89999999999999998887554    77899999999999774 2268999999999999999998887776 5678


Q ss_pred             CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc----------------------ccCCceEEEEE
Q 001358          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSVSVVHF  586 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~~~~  586 (1092)
                      ...|.+++|+ ++++|++++.    ++.|++||+.+++.+..+..+.                      .....|..++|
T Consensus       241 ~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~  315 (450)
T 2vdu_B          241 KHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK  315 (450)
T ss_dssp             SSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred             CCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence            8999999999 9999999986    6789999999999988887432                      12356899999


Q ss_pred             cCCCCEEEEEe-CCCeEEEEEC--CCC---ceEEEEeCCCCCCCCceEEEccCCCEEEEEeC------CCeEEEEECCC
Q 001358          587 DTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE  653 (1092)
Q Consensus       587 ~~~~~~l~~~s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~  653 (1092)
                      +|+++++++++ .++.|++|++  .++   ..+..+..+   ..+.+++|+|++.++++++.      +..|.+|.+..
T Consensus       316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            99999999998 8999999999  555   566667655   45899999996544443332      45578887653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.5e-27  Score=271.68  Aligned_cols=349  Identities=12%  Similarity=0.076  Sum_probs=259.1

Q ss_pred             eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE-EEEeCCCEEEEEEcc
Q 001358          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~  426 (1092)
                      +++++++.|+.|++||+.+++.+..                   +.+| ..+.+++|+|+|++| ++++.|+.|++||+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            5889999999999999999987754                   3344 458999999999987 566689999999999


Q ss_pred             CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEE-EEE
Q 001358          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI  505 (1092)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~  505 (1092)
                      +++.+.   .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++  +++.+ +++
T Consensus        63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~  134 (391)
T 1l0q_A           63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN  134 (391)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred             CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence            987554   444444 8999999999994 3456667899999999999998888755 4678888854  56666 788


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                      +.++.|++||+.+.+....+..+ ..+..++|+|++++++.++.   .++.|++||+.+++.+..+..+    ..+.+++
T Consensus       135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~  206 (391)
T 1l0q_A          135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIA  206 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceE
Confidence            88999999999988777766654 45689999999998865442   2667999999999888777643    5789999


Q ss_pred             EcCCCCEEEEEe---CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCCeeeecc
Q 001358          586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      |+|+++++++++   .++.|++||+.+++.+..+..+.   .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+.
T Consensus       207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            999999999987   68999999999999988887653   36889999999987 566789999999999998887776


Q ss_pred             cccccce---eeeecCCcccccccccCCceeecCCC----CCCc--ccceeeccccccceeceeeccCccceecccCCcc
Q 001358          662 VLSDNLR---KLSVNPISTVTGAGIANGSVSVNEDP----KEDV--KPEISVEAENKSEVEKPLFARPSECQSLLLPSKV  732 (1092)
Q Consensus       662 ~~~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~----s~d~--~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  732 (1092)
                      .+..+..   .+...|.+....      ...|....    .+..  ..+...+.+...++|++..+....          
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~------~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~----------  347 (391)
T 1l0q_A          284 VGKNPYASGQFIGSIPVQPVYP------SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK----------  347 (391)
T ss_dssp             CSSSEECCSSCEEECSSCCCCC------BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC----------
T ss_pred             CCcCCCccceeeeccccccccc------ccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC----------
Confidence            6554432   123333222110      11111110    0111  335556667888999976432211          


Q ss_pred             ccccEEEEEEecCCcEEEEee
Q 001358          733 KANKISRLTYNNGGQAIFALA  753 (1092)
Q Consensus       733 ~~~~i~~l~~s~~g~~l~~~~  753 (1092)
                      +.  -....|+++|.+.+...
T Consensus       348 ~~--~~~~~~~~~g~y~~~~~  366 (391)
T 1l0q_A          348 KQ--NPTHTYSETGIYTVRLT  366 (391)
T ss_dssp             SS--SCEECCSSCEEEEEEEE
T ss_pred             cC--CCeEEeCCCceEEEEEE
Confidence            11  12357888888765543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1e-28  Score=275.75  Aligned_cols=282  Identities=13%  Similarity=0.120  Sum_probs=216.0

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      .+.++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++.....                     +...+..++++
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~   67 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML   67 (355)
T ss_dssp             --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred             CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence            3456789999999999999998 688888765 789999887655321                     22257889999


Q ss_pred             CCCCEEE-EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC-ceeEEEec
Q 001358          406 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1092)
Q Consensus       406 pdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~  483 (1092)
                      +++++++ +++.|++|++||+.+++.+.   .+. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+..
T Consensus        68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~  138 (355)
T 3vu4_A           68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR  138 (355)
T ss_dssp             TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred             CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence            9998885 56778999999999987655   443 66789999999864    3333 3789999999998 77776655


Q ss_pred             CCcceEEEeecccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCceEEEEEecCCCEEE
Q 001358          484 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                         +...+++++    .+++.  |+.||.|++||+.+..                ....+..|...|.+++|+|+|++|+
T Consensus       139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~  211 (355)
T 3vu4_A          139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA  211 (355)
T ss_dssp             ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred             ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence               333444543    35555  6899999999998765                2567888999999999999999999


Q ss_pred             EEecCCCCcee-EEEEeCCCCeEEEEEe-e-ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--E-----
Q 001358          546 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T-----  615 (1092)
Q Consensus       546 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~-----  615 (1092)
                      +++.    ++. |++||..+++.+..+. + |.   ..|.+++|+|++++|++++.|++|++||+..+....  .     
T Consensus       212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence            9986    777 9999999999999998 5 66   899999999999999999999999999997653211  1     


Q ss_pred             -------------EeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          616 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       616 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                                   .... ........++|+++++++++++.||.+++|++..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence                         0001 1112246799999999999999999999998764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8.3e-27  Score=265.45  Aligned_cols=328  Identities=11%  Similarity=0.117  Sum_probs=254.3

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~  535 (1092)
                      ++++++.|+.|++||+.+++.+..+.+|.. +.+++|++  ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            788999999999999999999999987754 78888854  66665 677799999999999888777776555 89999


Q ss_pred             EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEE
Q 001358          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~  614 (1092)
                      +|+|+++++++++.   .++.|++||+.+++.+..+..+    ..+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus        80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            99999999877653   2567999999999998887754    368999999999988 677889999999999999988


Q ss_pred             EEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCC
Q 001358          615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1092)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1092)
                      .+..+.   .+..++|+|+++++ ++++.++.|++||+.+++....+.                                
T Consensus       153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------  197 (391)
T 1l0q_A          153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--------------------------------  197 (391)
T ss_dssp             EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred             EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence            887653   36899999999887 566778999999987542211100                                


Q ss_pred             CCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcc
Q 001358          694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  773 (1092)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~  773 (1092)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe----CCeEEEEEcCCceeeEEecCCCCCeEEE
Q 001358          774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL  849 (1092)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s----dg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1092)
                                                 +...+.+++|+|+++++++++    ++.|++||+.+++.+..+..+. .+.++
T Consensus       198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~  249 (391)
T 1l0q_A          198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI  249 (391)
T ss_dssp             ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred             ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence                                       222355677788887777664    5789999999998888887654 57899


Q ss_pred             EEcCCCCCEE-EEEeCCCeEEEEEcCCceeeEeeccccCCeE---EEEEcC------------CC----------CEEEE
Q 001358          850 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVS  903 (1092)
Q Consensus       850 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------dg----------~~l~s  903 (1092)
                      +|+| ++++| ++++.|+.|++||+.+++.+..+..|..+..   .+.+.|            +.          ..+..
T Consensus       250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~  328 (391)
T 1l0q_A          250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD  328 (391)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred             EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence            9999 77766 6778899999999999999988877655432   123332            21          34566


Q ss_pred             EeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358          904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       904 ~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      .+.|..+++|++.++....      .        .-....|+++|.+.+.
T Consensus       329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~  364 (391)
T 1l0q_A          329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR  364 (391)
T ss_dssp             CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred             CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence            6778899999998765211      1        1224679999998875

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.3e-28  Score=279.14  Aligned_cols=285  Identities=13%  Similarity=0.144  Sum_probs=232.9

Q ss_pred             CcEEEEEECCCCCEEE-EEeCCCEEEEEEccCC-CCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECC
Q 001358          397 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       397 ~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      .....++++|+...++ +++.+|.|+||++... +.......+.+|.+.|.+++|+| +++  +|++|+.||+|++||+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence            3455689999876554 5788999999999654 22233335779999999999999 788  89999999999999999


Q ss_pred             CC-------ceeEEEecCCcceEEEeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEecCCCE
Q 001358          474 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       474 ~~-------~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~  543 (1092)
                      ++       +.+..+.+|...|.+++|++  ++ .+|++++.||.|++||+.+.+....+  ..|...|.+++|+|++++
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            88       67889999999999999965  44 59999999999999999999888888  788999999999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEE-eeccccCCceEEEEEcCCCCEEEEE---eCCCeEEEEECCCCce-EEEEeC
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA  618 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---s~dg~i~iwd~~~~~~-~~~~~~  618 (1092)
                      |++++.    ++.|++||+++++.+..+ .+|.  ...+.++.|+|++.++++|   +.|+.|++||+.+++. +.....
T Consensus       191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~  264 (402)
T 2aq5_A          191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL  264 (402)
T ss_dssp             EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred             EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence            999986    667999999999999888 6666  2348999999999999998   7999999999998765 333332


Q ss_pred             CCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCe-eeeccc--ccccceeeeecCCcccccccccCCceeecCCC
Q 001358          619 GGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP  694 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1092)
                      . +...+.+++|+|+++++++++ .||.|++|++.+++. +..+..  +...+.+++|+                     
T Consensus       265 ~-~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s---------------------  322 (402)
T 2aq5_A          265 D-TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM---------------------  322 (402)
T ss_dssp             C-CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred             c-CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence            2 234689999999999997554 799999999998874 444444  44778888886                     


Q ss_pred             CCCcccceeeccccccceecee
Q 001358          695 KEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       695 s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                       |++..+++  .++.+++|++.
T Consensus       323 -p~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          323 -PKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             -CGGGSCGG--GTEEEEEEEEE
T ss_pred             -ccccccee--cceeEEEEEcC
Confidence             56666664  45689999976

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.3e-29  Score=308.79  Aligned_cols=260  Identities=13%  Similarity=0.153  Sum_probs=212.3

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ..++.+|++.|++++|+|+|+ ++++|+.||+|+|||+.++.....                 ..+.+|...|.+++|+|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~   63 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH   63 (753)
T ss_dssp             ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred             eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence            367899999999999999998 689999999999999985432211                 12778999999999999


Q ss_pred             C--CCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEEEEECCCC--ceeEE
Q 001358          407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTG--SRTYS  480 (1092)
Q Consensus       407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~--~~~~~  480 (1092)
                      +  +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+  ++  .+++|+.||.|++||+.++  .....
T Consensus        64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence            8  99999999999999999998752 233367789999999999999  88  8999999999999999887  34566


Q ss_pred             EecCCcceEEEeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEecC---CC
Q 001358          481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR  542 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~d---g~  542 (1092)
                      +.+|...|.+++|++..           ++.++++|+.||.|++||++...    ....+..|...|.+++|+|+   ++
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            78899999999997742           57899999999999999998774    34467788999999999999   89


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358          543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      ++++++.    ++.|++||..++...  ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus       221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999986    667999999887421  1111112234789999999999999999999999999998643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.1e-26  Score=266.12  Aligned_cols=355  Identities=14%  Similarity=0.093  Sum_probs=261.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCC-CEEEEEEccCCCCccceEEecccccceeEEE---eeCCCCcEEEEE----------
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVIT----------  460 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~---~s~d~~~l~l~s----------  460 (1092)
                      ....|..+.++|....++..... ...+++..             .....+..++   |+|+++.+++++          
T Consensus        26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   92 (433)
T 3bws_A           26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR   92 (433)
T ss_dssp             -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred             CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence            44567778888865444443211 11222221             1233456666   777766422222          


Q ss_pred             --EeCCC--cEEEEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-----EecCCC
Q 001358          461 --CGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG  529 (1092)
Q Consensus       461 --~~~d~--~i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~  529 (1092)
                        ++.++  .|..||..++  +.+..+..+. .+.+++|++  ++.++++++.++.|++||+.+++...     .+..+.
T Consensus        93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  169 (433)
T 3bws_A           93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL  169 (433)
T ss_dssp             ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred             ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence              23334  4444555445  5566666554 455788865  66788888899999999999887766     344677


Q ss_pred             CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 001358          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN  608 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~  608 (1092)
                      ..+.+++|+++++.+++++.    ++.|++||..+++.+..+..+.   ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus       170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            78999999999999998875    6679999999999998888766   7899999999999886554 89999999999


Q ss_pred             CCceEEEEeCCCCCCCCceEEEccCCCEEEEEe--------CCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                      +++.+..+..+.   .+.+++|+|+++++++++        .|+.|++||+.+++.....                    
T Consensus       243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--------------------  299 (433)
T 3bws_A          243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--------------------  299 (433)
T ss_dssp             TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred             CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence            999888776543   378999999999999887        3667777776543211100                    


Q ss_pred             ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  760 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l  760 (1092)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (433)
T 3bws_A          300 --------------------------------------------------------------------------------  299 (433)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-e-CCeEEEEEcCCceeeEE
Q 001358          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT  838 (1092)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-s-dg~i~iwd~~~~~~~~~  838 (1092)
                                                             .+...+.+++|+|+++.++++ + ++.|++||+.+++.+..
T Consensus       300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence                                                   012245567888888755444 3 68899999998888877


Q ss_pred             ecCCCCCeEEEEEcCCCCCEEEEEeC---------------CCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEE
Q 001358          839 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS  903 (1092)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  903 (1092)
                      +. +...+.+++|+| ++++|++++.               ||.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus       341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred             ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence            76 667899999999 8888888876               57999999999999888886 457999999999999998


Q ss_pred             EeC-CCcEEEEEcCC
Q 001358          904 SGG-DAQIFVWDVDG  917 (1092)
Q Consensus       904 ~s~-Dg~i~iwd~~~  917 (1092)
                      ++. |+.|++|+++.
T Consensus       418 ~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          418 SDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EETTTTEEEEEEETT
T ss_pred             EECCCCeEEEEEecC
Confidence            875 99999999874

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.7e-27  Score=248.86  Aligned_cols=270  Identities=10%  Similarity=0.053  Sum_probs=200.4

Q ss_pred             EEEEEeCCCeEEEEECCCC---CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                      .++++++ ..|++|+..++   +.+.+...+..+|..+.+.|+...+                      +.... |    
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~-~----  107 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL----------------------VCVAL-G----  107 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC----------------------EEEEE-C----
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce----------------------eeeee-c----
Confidence            4555555 69999999998   7888999999999999887643322                      11110 0    


Q ss_pred             eceeeccCccceecccCCccccccEEEEEEecC----CcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCC
Q 001358          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1092)
                                        .-+...|.+++++|+    ++.++.++.+  +.+|++                         
T Consensus       108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------------  142 (356)
T 2w18_A          108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------------  142 (356)
T ss_dssp             ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred             ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence                              115678999999999    9988887744  555542                         


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe---CCeEEEEEc-CCceeeEEecCCCCCeEEEEEcC--CCCCEEEEE
Q 001358          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG  862 (1092)
Q Consensus       789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg  862 (1092)
                                             ++|+++.++.   |+.|++|++ .+++.+..+..|...++.++|++  .++.+||+|
T Consensus       143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence                                   3556666654   788999998 45778788888888888888887  467899999


Q ss_pred             eCCCeEEEEEcCCceeeEeecccc---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEEcCCCceeeeeeee
Q 001358          863 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ  927 (1092)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l------------~s~s~Dg~i~iwd~~~~~~~~~~~~~  927 (1092)
                      +.|++|+|||+.+|+++.++.+|.   ..+.+++|+|||+++            ++|+.|++|++||..+++......+.
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~  279 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC  279 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence            999999999999999999998754   467788999999886            66889999999999987754433333


Q ss_pred             cCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEE-EEEEecCCCEEEEEeCCCcEEEE
Q 001358          928 TPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPIS-QATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       928 ~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~-~l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
                      .+.++..   .+  +..+.++.++|+ +.|++|+|||+.+++++.. +.+|...+. +++|||||++|++|+.|++|+||
T Consensus       280 ~p~Gh~~---~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          280 LPPGQAG---RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             CCTTCCC---CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             ccCCCcc---ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence            3445443   23  333444888888 4799999999999999988 557766554 68999999999999999999999


Q ss_pred             EC
Q 001358         1006 EA 1007 (1092)
Q Consensus      1006 d~ 1007 (1092)
                      |+
T Consensus       354 d~  355 (356)
T 2w18_A          354 HY  355 (356)
T ss_dssp             EE
T ss_pred             cC
Confidence            96

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=8.9e-28  Score=276.37  Aligned_cols=256  Identities=16%  Similarity=0.250  Sum_probs=214.4

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCC----------CCceeeeeeeeeecccccceeEEeeecCCC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS----------GQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~----------~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~  396 (1092)
                      ...+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+          ...+.                   .+.+|.
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~  181 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQ  181 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCS
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCC
Confidence            3556789999999999998545899999999999999986          22222                   267899


Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCc----cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..|.+++|+|+++ +|++|+.||.|++||+.++...    .....+.+|...|.+++|+|++.. ++++++.|+.|++||
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEE
Confidence            9999999999998 9999999999999999885432    123457789999999999995444 899999999999999


Q ss_pred             CCCC---ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEecCCC-EEEE
Q 001358          472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFS  546 (1092)
Q Consensus       472 ~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~-~l~~  546 (1092)
                      +.++   +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ .+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             TTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence            9987   5778888999999999997642 24799999999999999998 456778888999999999999996 5777


Q ss_pred             EecCCCCceeEEEEeCCC--------------CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 001358          547 CGTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd~~~~  610 (1092)
                      ++.    ++.|++||+..              .+.+..+.+|.   ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus       340 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          340 SGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EeC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            765    56799999987              35556666666   8899999999999 8899999999999998754

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=9.8e-27  Score=268.91  Aligned_cols=300  Identities=12%  Similarity=0.040  Sum_probs=229.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceE--EecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      ..+.+++|+|+++++++++.++.|++||+.+++......  .+.+|.+.|.+++|+++++  ++++++.|+.|++||+++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            456699999988888888888999999999987553211  2457888999999999998  899999999999999999


Q ss_pred             CceeEEEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC-
Q 001358          475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-  552 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-  552 (1092)
                      ++.+..+..|...+.+++|++  ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++.... 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred             ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence            999999999999999999965  55666 5555899999999998777666655 346899999999999998874321 


Q ss_pred             ---CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358          553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                         .++.|++||+.+++.+..+. +.   ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+...   ..+.++
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~  350 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI  350 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred             cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence               36789999999998877663 33   478899999999866 45689999999999999988888643   347899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                      +|+|+++++++++.+..                                                 ..+..++++++.||
T Consensus       351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg  381 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG  381 (433)
T ss_dssp             EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred             EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence            99999999988876320                                                 01123344445555


Q ss_pred             ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec-CCeeEEeeec
Q 001358          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP  764 (1092)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~lw~~~  764 (1092)
                      .+++||....+.....       .....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus       382 ~v~~~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          382 KVYVIDTTTDTVKEFW-------EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEEEEECCCCcEEEEe-------cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            5555554322111110       02345788999999998888775 8999999864

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=303.76  Aligned_cols=255  Identities=17%  Similarity=0.300  Sum_probs=215.2

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCC--CCcEEEEEEeCCCcEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~  468 (1092)
                      ++.+|.+.|++++|+|+|++|++|+.||.|+|||+.++. ......+.+|.++|++++|+|+  ++  ++++|+.||.|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~   80 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL   80 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence            377899999999999999999999999999999998532 2334478899999999999998  77  899999999999


Q ss_pred             EEECCCCc--eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEec-----
Q 001358          469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA-----  539 (1092)
Q Consensus       469 vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~-----  539 (1092)
                      +||+.+++  .+..+.+|...|.+++|++..++.++++|+.||.|++||+....  ....+..+...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999987  77888899999999999776447899999999999999998873  3456677888999999999     


Q ss_pred             --------CCCEEEEEecCCCCceeEEEEeCCCC----eEEEEEeeccccCCceEEEEEcCC---CCEEEEEeCCCeEEE
Q 001358          540 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI  604 (1092)
Q Consensus       540 --------dg~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~s~dg~i~i  604 (1092)
                              ++..+++++.    ++.|++||..++    .....+.+|.   ..|.+++|+|+   ++++++++.||.|++
T Consensus       161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence                    5899999986    566999999877    5556677776   89999999999   899999999999999


Q ss_pred             EECCCCceE---EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCC
Q 001358          605 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1092)
Q Consensus       605 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ||+.++...   .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            999886421   112222344578999999999999999999999999998653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=3.3e-27  Score=263.63  Aligned_cols=299  Identities=13%  Similarity=0.135  Sum_probs=215.8

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|...|.+++|||||++||+|+.++ ++|||+.+++...   .  .+...+..+++.++++. ++++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence            467999999999999999999998776 7899998764332   1  22235888999998884 346778889999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      ..+++.+..+. |...|.++++++  +  .++++ .|+.|++||+.+. +....+..   +...+++++  .++++++. 
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg-  155 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE-  155 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred             CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence            99999999887 677999999854  3  34443 5889999999887 44444433   445567777  66666522 


Q ss_pred             CCCceeEEEEeCCCCe----------------EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceE
Q 001358          551 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL  613 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-i~iwd~~~~~~~  613 (1092)
                       ..++.|++||+.++.                .+..+.+|.   ..|.+++|+|++++|++|+.|++ |++||+.+++.+
T Consensus       156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred             -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence             236679999999876                267778877   89999999999999999999998 999999999999


Q ss_pred             EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeee--eccc-----ccccceeeeecCCcccccccccCC
Q 001358          614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAGV-----LSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      ..+....+...|.+++|+|++++|++++.|++|++|++.......  .+..     .....+.++......  .......
T Consensus       232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  309 (355)
T 3vu4_A          232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV--DKHVRGC  309 (355)
T ss_dssp             EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCC--CTTCCCC
T ss_pred             EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEecc--CCCCCce
Confidence            999732234579999999999999999999999999998653211  1111     001111110000000  0001113


Q ss_pred             ceeecCCCCCCcccceeeccccccceeceeecc
Q 001358          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1092)
                      .+++    ++|++.+++++.||.+++|++....
T Consensus       310 ~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          310 KIAW----ISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             EEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            4455    7899999999999999999987543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.7e-27  Score=263.55  Aligned_cols=278  Identities=8%  Similarity=0.048  Sum_probs=218.3

Q ss_pred             EeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001358          448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  527 (1092)
Q Consensus       448 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  527 (1092)
                      .+.+++.  ++++|+.||+|++||+.+++.+..+.  ...|.++.+++.     +++++.|++|++|+...         
T Consensus        43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~---------  104 (343)
T 3lrv_A           43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN---------  104 (343)
T ss_dssp             SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred             hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence            4456777  89999999999999999999988886  466777777653     99999999999998653         


Q ss_pred             CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-eccccCCceEEEEEcC--CCCEEEEEeCCCeEEE
Q 001358          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI  604 (1092)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~s~dg~i~i  604 (1092)
                                                  .+.+||..+++.+..+. +|.   ..|.+++|+|  +++++++++.||+|++
T Consensus       105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A          105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence                                        27788888888776665 443   7899999999  9999999999999999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCee-eecccccccceeeeecCCcccccccc
Q 001358          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      ||+++++.......+. ...+.+++|+|++.++++|+.||.|++||+.+++.. ..+.                      
T Consensus       154 wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~----------------------  210 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP----------------------  210 (343)
T ss_dssp             EESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred             EECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence            9999999876664433 235899999999999999999999999998765221 1000                      


Q ss_pred             cCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (343)
T 3lrv_A          211 --------------------------------------------------------------------------------  210 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC--
Q 001358          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP--  841 (1092)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~--  841 (1092)
                                                      .   +|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..  
T Consensus       211 --------------------------------~---~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~  255 (343)
T 3lrv_A          211 --------------------------------V---DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYT  255 (343)
T ss_dssp             --------------------------------C---CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCB
T ss_pred             --------------------------------c---cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccc
Confidence                                            0   166778888888888888888877899999888776655443  


Q ss_pred             -CCCCe--EEEEEcCCCCCEEEEEeC-CCeEEEEEcCCceeeEeeccccCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 001358          842 -PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       842 -~~~~i--~~l~~s~~d~~~lasg~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~i~iwd  914 (1092)
                       |...+  .+++|+| ++++|++++. |+.|+||++.+.......    .++..++|++   +.+.+++++.|+.+.++-
T Consensus       256 ~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             C-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             cccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence             33333  4699999 8999999998 999999999766543332    5678889998   889999999999999886


Q ss_pred             cCC
Q 001358          915 VDG  917 (1092)
Q Consensus       915 ~~~  917 (1092)
                      ...
T Consensus       331 ~~~  333 (343)
T 3lrv_A          331 KTN  333 (343)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.4e-27  Score=271.25  Aligned_cols=265  Identities=15%  Similarity=0.096  Sum_probs=219.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEec--------------------------------------
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID--------------------------------------  438 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~--------------------------------------  438 (1092)
                      .++.+++|+|||++|+++ .++.|++||+.+|+.......+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999977666 56789999999987211111222                                      


Q ss_pred             ----------------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC--CCceeEEEe--cCCcceEEEeecccCC
Q 001358          439 ----------------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKEN  498 (1092)
Q Consensus       439 ----------------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~  498 (1092)
                                      +|.+.|.+++|+|+++. ++++++.|+.|++||+.  +++.+..+.  .|...|.+++|++  +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~  160 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D  160 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence                            34457999999999993 24899999999999999  888888886  5678899999954  6


Q ss_pred             ccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEecC---CCEEEEEecCCCCceeEEEEeCCCCeEEEE-
Q 001358          499 IHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT-  570 (1092)
Q Consensus       499 ~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-  570 (1092)
                      +.+|++++.+|.+++|++.......    .+..|...|.+++|+|+   +++|++++.    ++.|++||+.+++.+.. 
T Consensus       161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~  236 (450)
T 2vdu_B          161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW  236 (450)
T ss_dssp             SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred             CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence            7899999999999999998776543    66678889999999999   999999986    56799999999988877 


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----------------------CCCCCCce
Q 001358          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENPR  627 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~  627 (1092)
                      +.+|.   ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+                       .....+..
T Consensus       237 ~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          237 LFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             CCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             ecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            44666   899999999 9999999999999999999999998888632                       11235789


Q ss_pred             EEEccCCCEEEEEe-CCCeEEEEEC--CCC---CeeeecccccccceeeeecC
Q 001358          628 ICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP  674 (1092)
Q Consensus       628 v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~v~~~~~~~  674 (1092)
                      ++|+|+++++++++ .++.|++|++  ..+   ..+..+..+ ..+.+++++|
T Consensus       313 i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          313 IIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             EEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence            99999999999999 8999999999  555   556666666 7788888885

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=9.8e-27  Score=267.64  Aligned_cols=256  Identities=16%  Similarity=0.311  Sum_probs=214.2

Q ss_pred             EEeeecCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEccCC-------CCccceEEecccccceeEEEeeCCCCcEEEE
Q 001358          388 KTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVI  459 (1092)
Q Consensus       388 ~~~~l~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~  459 (1092)
                      ......+|.+.|++++|+|+ +.+||+++.+|.|++||+.+.       ........+.+|...|.+++|+|++.. +|+
T Consensus       120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~  198 (430)
T 2xyi_A          120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLL  198 (430)
T ss_dssp             EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEE
T ss_pred             EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEE
Confidence            33446679999999999997 789999999999999999862       112334477899999999999999886 699


Q ss_pred             EEeCCCcEEEEECCCCce-------eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCC
Q 001358          460 TCGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPG  529 (1092)
Q Consensus       460 s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~  529 (1092)
                      +|+.||.|++||+.++..       ...+.+|...|.+++|++. ++.+|++++.||.|++||++..   .....+..+.
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            999999999999988432       4667789999999999764 4579999999999999999987   4566777888


Q ss_pred             CceEEEEEecCCC-EEEEEecCCCCceeEEEEeCCC-CeEEEEEeeccccCCceEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 001358          530 LGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWD  606 (1092)
Q Consensus       530 ~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~s~dg~i~iwd  606 (1092)
                      ..|.+++|+|++. .+++++.    ++.|++||+++ +..+..+.+|.   ..|.+++|+|+++ .+++++.||.|++||
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             CCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            9999999999998 4667765    67799999997 56778888877   8999999999985 588899999999999


Q ss_pred             CCC--------------CceEEEEeCCCCCCCCceEEEccCCC-EEEEEeCCCeEEEEECCCC
Q 001358          607 MNK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES  654 (1092)
Q Consensus       607 ~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~  654 (1092)
                      +..              ...+.....+  ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            987              2455555444  45699999999999 9999999999999998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7e-28  Score=268.33  Aligned_cols=271  Identities=10%  Similarity=0.055  Sum_probs=213.2

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      ..+.+|++ ++++|+.||+|++||+.+++.+....                     ...|.+++|+|+   +++++.|++
T Consensus        42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~~~~---~~s~s~D~~   96 (343)
T 3lrv_A           42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT---------------------TPNPRTGGEHPA---IISRGPCNR   96 (343)
T ss_dssp             SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE---------------------EECCCTTCCCCS---EEEECSTTE
T ss_pred             hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe---------------------cCCceeeeeCCc---eEEecCCCe
Confidence            34557776 79999999999999999998776421                     356778889998   999999999


Q ss_pred             EEEEEcc---------CCCCccceEEecccccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcc
Q 001358          420 VQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAP  487 (1092)
Q Consensus       420 i~iwd~~---------~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~  487 (1092)
                      |++|+..         +++.+..  ...+|.+.|.+++|+|  +++  ++++++.|++|++||+++++.+.... .|...
T Consensus        97 i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~  172 (343)
T 3lrv_A           97 LLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE  172 (343)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred             EEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence            9999766         3332221  1226778999999999  999  89999999999999999999877664 45568


Q ss_pred             eEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      |.+++|++  ++.+|++|+.||.|++||+++.... ..+.. |..+|.+++|+|+|.+|++++.    + .|++||++++
T Consensus       173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~  245 (343)
T 3lrv_A          173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKD  245 (343)
T ss_dssp             CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSS
T ss_pred             eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCC
Confidence            99999955  7789999999999999999998887 67777 8899999999999999999983    2 6999999998


Q ss_pred             eEEEEEeeccccCCce--EEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc---CCCEEEE
Q 001358          566 AIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAV  639 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~  639 (1092)
                      +.+..+..+..+...+  .+++|+|+++++++++. |+.+++|++.+.......      ..+..++|++   +...+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~  319 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV  319 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred             CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence            8766655422112333  46999999999999998 999999999765433332      1255677887   8889999


Q ss_pred             EeCCCeEEEEECC
Q 001358          640 IANENRIKILETP  652 (1092)
Q Consensus       640 ~~~dg~i~iw~~~  652 (1092)
                      ++.||.+.++-..
T Consensus       320 ~~~d~~~~~~~~~  332 (343)
T 3lrv_A          320 VCGDGGIAAILKT  332 (343)
T ss_dssp             EEETTEEEEEEEC
T ss_pred             EecCCceEEEEec
Confidence            9999999887543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.1e-26  Score=242.13  Aligned_cols=285  Identities=14%  Similarity=0.073  Sum_probs=197.1

Q ss_pred             ceEEeec-CCCceEEEEEcCcCcEEEEecCCC---CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          337 PMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       337 V~~v~~s-pdg~~llasg~~d~~i~iwd~~~~---~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      +.++-|- +..+.+.+..-...+|++|+..++   +.+++                   +.+|+.+|..++|+||-.-|+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~~  102 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNLV  102 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSCE
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCccccee
Confidence            4455553 344433333333489999999998   55554                   556777888888888654333


Q ss_pred             EEe--CCCEEEEEEccCC---CCccceEEecccccceeEEEeeCCCCcEEEEEEe--CCCcEEEEEC-CCCceeEEEecC
Q 001358          413 VAY--SKHIVQLYAYHGG---SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA-VTGSRTYSFEGH  484 (1092)
Q Consensus       413 s~~--~d~~i~iwd~~~~---~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~-~~~~~~~~~~~~  484 (1092)
                      +..  .=..-.++-+.-.   +...+...-.+|...|..+   ++++  ++.+++  .|+.|++|++ .+|+.+..+.+|
T Consensus       103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~  177 (356)
T 2w18_A          103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFLM  177 (356)
T ss_dssp             EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred             eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence            321  1111112222111   1111111223444445443   4555  444433  5999999999 558888899999


Q ss_pred             CcceEEEeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEecCCCEEEEEec--------CCC
Q 001358          485 GAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGT--------SKE  552 (1092)
Q Consensus       485 ~~~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~s~dg~~l~~~~~--------~~~  552 (1092)
                      ...++.++|++ .+++.+|++++.|++|++||+.+++...++..+..   .+.+++|+|+|+++++++.        ++.
T Consensus       178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs  257 (356)
T 2w18_A          178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS  257 (356)
T ss_dssp             CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred             CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence            99999999988 66789999999999999999999999888876443   5778899999999876542        234


Q ss_pred             CceeEEEEeCCCCeEEEEEe-----eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          553 GESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      .+.+|++||..+++.+..+.     +|.   ..+.+..+  ++..+++++.|++|+|||+.+++++.++..|.. ..+..
T Consensus       258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~---~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs~  331 (356)
T 2w18_A          258 PVFQLIVINPKTTLSVGVMLYCLPPGQA---GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWSF  331 (356)
T ss_dssp             CCEEEEEEETTTTEEEEEEEECCCTTCC---CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCCE
T ss_pred             CCcEEEEEECCCCEEEEEEEeeccCCCc---ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEEE
Confidence            58899999999999887663     333   34443344  378899999999999999999999999986543 22446


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEC
Q 001358          628 ICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ++|+|||++|++|+.|++|+|||.
T Consensus       332 vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          332 VKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEecC
Confidence            899999999999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=9.7e-26  Score=264.60  Aligned_cols=345  Identities=11%  Similarity=0.091  Sum_probs=247.0

Q ss_pred             eecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeec-CCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      +|+|++. ++++++.|++|.+||..+++.+..                   +. ++.  +..++|||||++|++++.|++
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~  201 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR  201 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence            4899996 789999999999999999988765                   33 333  889999999999999999999


Q ss_pred             EEEEEc--cCCCCccceEEecccccceeEEEeeC----CCCcEEEEEEe-CCCcEEEEECCCCceeEEEecCCcceEEEe
Q 001358          420 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       420 i~iwd~--~~~~~~~~~~~l~~h~~~v~~~~~s~----d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~  492 (1092)
                      |.+||+  .+++.+.   ++. +...+..++|+|    ||+  ++++++ .+++|.+||..+++++..+..+...+....
T Consensus       202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence            999999  7765444   454 344679999999    999  566665 589999999999999888764322111111


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE--E
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T  570 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~  570 (1092)
                      ++                                 +...+..+.++|++..+++...   .++.|.+||..+++.+.  .
T Consensus       276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~  319 (543)
T 1nir_A          276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS  319 (543)
T ss_dssp             EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred             cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence            11                                 1125667888888777666542   36678889887765443  2


Q ss_pred             EeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEE-EccC-CCEEEEEe-CCCeE
Q 001358          571 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI  646 (1092)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i  646 (1092)
                      +. +.   ..+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus       320 i~-~~---~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V  395 (543)
T 1nir_A          320 IG-AA---PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI  395 (543)
T ss_dssp             EE-CC---SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred             ec-cC---cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence            22 22   5677899999999887655 68999999999999998887532111112223 4676 55566654 57899


Q ss_pred             EEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceec
Q 001358          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1092)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  726 (1092)
                      .+|+..+..       |..                                                             
T Consensus       396 ~v~d~~~~~-------~~~-------------------------------------------------------------  407 (543)
T 1nir_A          396 SLIGTDPKN-------HPQ-------------------------------------------------------------  407 (543)
T ss_dssp             EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred             EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence            999987520       000                                                             


Q ss_pred             ccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~  806 (1092)
                            +...+                                                     +....    .+...+.
T Consensus       408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~  424 (543)
T 1nir_A          408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL  424 (543)
T ss_dssp             ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred             ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence                  00000                                                     00000    1344556


Q ss_pred             EEEEecCCCEEEEEe--------CCeEEEEEcCCceee-EEe--------cCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001358          807 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D  864 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~  864 (1092)
                      .++++|||++|++++        +++|.+||+.+++.. ..+        ..+...+..++|+| +|+.|+++.     .
T Consensus       425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~  503 (543)
T 1nir_A          425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND  503 (543)
T ss_dssp             CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred             EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence            788889999888876        468999999998876 443        35677899999999 888888663     4


Q ss_pred             CCeEEEEEcCCceeeEeeccc
Q 001358          865 DSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       865 dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      |+.|.|||..+++++.+++.+
T Consensus       504 ~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          504 SSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             CCEEEEEETTTTEEEEEECCT
T ss_pred             CCeEEEEECCCceEEEeecCC
Confidence            799999999999999998854

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=4.6e-26  Score=267.34  Aligned_cols=343  Identities=9%  Similarity=0.086  Sum_probs=257.1

Q ss_pred             EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCceE
Q 001358          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL  613 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~--~~~~~~  613 (1092)
                      +++|++..+++++.    ++.|.+||..+++++.++....    .+..++|+|+++++++++.|++|++||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence            37888877777654    6779999999999999988544    3889999999999999999999999999  888888


Q ss_pred             EEEeCCCCCCCCceEEEcc----CCCEEEEEeC-CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCce
Q 001358          614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  688 (1092)
                      ..+...   ..+..++|+|    +|+++++++. +++|.+||..+.+.+..+..+...+....+.               
T Consensus       216 ~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~---------------  277 (543)
T 1nir_A          216 AEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH---------------  277 (543)
T ss_dssp             EEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred             EEEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence            888743   2468999999    9999999885 8999999999887766554211110000000               


Q ss_pred             eecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEE-EeecCCeeEEeeecCCc
Q 001358          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRND  767 (1092)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~i~lw~~~~~~  767 (1092)
                                                                  ....+.++.+++++..++ +...++.|.+|++....
T Consensus       278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~  313 (543)
T 1nir_A          278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  313 (543)
T ss_dssp             --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred             --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence                                                        123678899999776654 44557899998875431


Q ss_pred             cccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC----
Q 001358          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----  841 (1092)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~----  841 (1092)
                      .                      +....+   .+...+..++|+|+|+++++++  +++|.+||..+++++..+..    
T Consensus       314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence            1                      110011   1345567899999999887765  68999999999999888764    


Q ss_pred             CCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEe-------C
Q 001358          842 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G  906 (1092)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-------~  906 (1092)
                      |.+....+ ++|+++.+++++. .|++|.+||+.+       +++++++.+|.+.+..++|+|||++|++++       .
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence            55444443 5774477778776 689999999998       899999999999999999999999999987       2


Q ss_pred             CCcEEEEEcCCCcee-eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE------eCCcEEEEEcCCceeeeeec
Q 001358          907 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       907 Dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~v~lwd~~~~~~~~~~~  974 (1092)
                      +++|.|||+.+++.. ....+....+.......+..++|+|||+.|.++      .++.|.|||..+++++..+.
T Consensus       448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            779999999998754 211111100001112368999999999999874      26899999999999987744

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=3.5e-27  Score=267.49  Aligned_cols=295  Identities=12%  Similarity=0.089  Sum_probs=194.5

Q ss_pred             cCCCceEEEEEcCcCcEEEEecCCCCce-----eeeeeeeeecccccce-----eEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          343 HPVQHTLLLVGTNVGDTGLWDVNSGQKL-----FIRNFKVWDIGACSML-----FKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       343 spdg~~llasg~~d~~i~iwd~~~~~~~-----~~~~~~~~d~~~~~~~-----~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      +|++..+++.| .++.|.+|+.......     ....+..|+.......     ........|...+....+++++.+||
T Consensus        27 ~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  105 (393)
T 4gq1_A           27 SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA  105 (393)
T ss_dssp             SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred             CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence            56665566666 4688999986432211     1111222221111000     00112334555566666777888999


Q ss_pred             EEeCCCEEEEEEccCCCCcc--ceEEecccccceeEEEeeC--------CCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          413 VAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~--------d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      +++.|++|+|||+.+++...  ....+.+|.+.|++++|+|        |++  +|+||+.|++|+|||+.++.++..+.
T Consensus       106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~~  183 (393)
T 4gq1_A          106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAGY  183 (393)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeeec
Confidence            99999999999999876432  2224679999999999998        777  89999999999999999999888888


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------------------------cCCCCceEEEEE
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------------------------DAPGLGCTRMAY  537 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------~~~~~~i~~~~~  537 (1092)
                      +|..+|.+++|+|. +..+|++++.||+|++||+.+.......                         ..+...+.++.|
T Consensus       184 ~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~  262 (393)
T 4gq1_A          184 PLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRW  262 (393)
T ss_dssp             ECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEE
T ss_pred             CCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeee
Confidence            99999999999764 2358999999999999999876543321                         234556778888


Q ss_pred             e-cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEE------------------EEcC--CCCEEEEE
Q 001358          538 S-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAA  596 (1092)
Q Consensus       538 s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~  596 (1092)
                      + +|++.+++++.    ++.+++||+.++.....+..+.   ..+..+                  .++|  ++.++++|
T Consensus       263 ~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg  335 (393)
T 4gq1_A          263 IGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAH  335 (393)
T ss_dssp             ETTTTCEEEEECT----TSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEE
T ss_pred             ecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEE
Confidence            6 79999999876    6679999999887766665544   222222                  2333  23355668


Q ss_pred             eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       597 s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      +.||+|++||+.+++....+..+.  ..|.+++|+|||++||+++.+| +.+|.+
T Consensus       336 s~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          336 SQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            899999999999998877766553  3699999999999999998765 555554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=6.6e-27  Score=265.22  Aligned_cols=252  Identities=6%  Similarity=-0.057  Sum_probs=177.8

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC-
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp-  406 (1092)
                      .....|...+....+++++. ++|+|+.|++|+|||+.+++......              ...+.+|.+.|.+++|+| 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~  147 (393)
T 4gq1_A           83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV  147 (393)
T ss_dssp             EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred             ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence            34456666666777777776 79999999999999999887654211              123789999999999998 


Q ss_pred             -------CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                             ||++||+|+.|++|+|||+.++..+.   .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus       148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred             cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence                   89999999999999999998875443   56678999999999999864 79999999999999999886543


Q ss_pred             EE-------------------------ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001358          480 SF-------------------------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       480 ~~-------------------------~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  534 (1092)
                      ..                         .+|...+.++.|. .+++..+++++.|+++++||+........+..+...+..
T Consensus       224 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~  302 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGP  302 (393)
T ss_dssp             -------CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC------------------
T ss_pred             cccccCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCcccc
Confidence            22                         3577778888875 357889999999999999999876655544444333333


Q ss_pred             EE------------------Eec-CCC-EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE
Q 001358          535 MA------------------YSA-NGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL  594 (1092)
Q Consensus       535 ~~------------------~s~-dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  594 (1092)
                      +.                  ++| .+. ++++++.    ++.|++||..+++....+.+|.   .+|.+++|+|+|++|+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~---~~V~svafspdG~~LA  375 (393)
T 4gq1_A          303 KNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLG---MPIVDFCWHQDGSHLA  375 (393)
T ss_dssp             -CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECS---SCEEEEEECTTSSEEE
T ss_pred             EEEccccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCC---CcEEEEEEcCCCCEEE
Confidence            22                  322 233 3444443    6789999999999988888877   8999999999999999


Q ss_pred             EEeCCCeEEEEEC
Q 001358          595 AAGDDHVIKIWDM  607 (1092)
Q Consensus       595 ~~s~dg~i~iwd~  607 (1092)
                      +++.+| +.+|.+
T Consensus       376 ~as~~G-v~lvrL  387 (393)
T 4gq1_A          376 IATEGS-VLLTRL  387 (393)
T ss_dssp             EEESSE-EEEEEE
T ss_pred             EEeCCC-eEEEEE
Confidence            999776 555554

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=3.1e-25  Score=252.73  Aligned_cols=307  Identities=9%  Similarity=0.033  Sum_probs=241.7

Q ss_pred             CCCceEEeecCCCceEEEEEc----CcC----cEEEEec--CCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~----~d~----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...|...+|++.|..++++|+    .||    +|+|||+  .+++.+....                 +.+|...+..++
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~  124 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAG  124 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHH
Confidence            358899999999987888886    457    8999999  8988764322                 556777777777


Q ss_pred             ECC--------------CCCEEEEEeCC------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358          404 WSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       404 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      +++              .+..+++++.+      +.|++||+.++. .+   .+.+|...|.+++|+|||+  .|++++.
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~  198 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF  198 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence            765              26677776654      799999998543 33   5678999999999999999  7888887


Q ss_pred             CC---cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCceEEEEE
Q 001358          464 DK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1092)
Q Consensus       464 d~---~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~  537 (1092)
                      ++   .|++||+.+++.. .+..|...+.+++|+|  ||+.|+ +++.++.  |++||+.+++. ..+..+...+.+++|
T Consensus       199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred             cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence            75   9999999999875 5667888999999954  677776 6666665  99999987654 556667778999999


Q ss_pred             ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceEE
Q 001358          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLT  614 (1092)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---g~i~iwd~~~~~~~~  614 (1092)
                      +|||++|++++.. ++...|++||..+++.. .+..+.   ..+..++|+|++++|++++.+   ..|++||+.+++.. 
T Consensus       275 spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-  348 (415)
T 2hqs_A          275 FPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-  348 (415)
T ss_dssp             CTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-
T ss_pred             CCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-
Confidence            9999999988742 23557999999988743 333333   678899999999999987754   68999999998874 


Q ss_pred             EEeCCCCCCCCceEEEccCCCEEEEEeCCC---eEEEEECCCCCeeeecccccccceeeeecCCcc
Q 001358          615 TIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIST  677 (1092)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~  677 (1092)
                      .+..+   ..+..++|+|+|++|++++.++   .|++|++. +.....+..+...|.+++|+|...
T Consensus       349 ~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          349 VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            34333   2588999999999999988876   79999987 456777888999999999997643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=9.1e-24  Score=240.60  Aligned_cols=307  Identities=13%  Similarity=0.115  Sum_probs=229.3

Q ss_pred             cccceeEEEeeCCCCcEEEEEEe----CCC----cEEEEEC--CCCcee--EEEecCCcceEEEeeccc-----------
Q 001358          440 HVGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK-----------  496 (1092)
Q Consensus       440 h~~~v~~~~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~~~~~v~~i~~~~~-----------  496 (1092)
                      +...+...+|++.|.. ++++|+    .||    .|++||+  .+++++  ..+.+|...+..+++.+.           
T Consensus        61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            3356788899999886 666776    567    8999999  999987  558899988887776541           


Q ss_pred             -CCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358          497 -ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       497 -~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                       ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. 
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-  216 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-  216 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-
Confidence             113466666654      7999999975 44556666778999999999999999988542 2468999999999875 


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CC-
Q 001358          570 TYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN-  644 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg-  644 (1092)
                      .+..+.   ..+.+++|+|+|+.|+ +++.++.  |++||+.+++. ..+..+  ...+.+++|+|||++|++++. ++ 
T Consensus       217 ~l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~  290 (415)
T 2hqs_A          217 QVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGR  290 (415)
T ss_dssp             EEECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             EeecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCC
Confidence            455555   6899999999999888 5665554  99999998876 344333  345789999999999988876 34 


Q ss_pred             -eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccc
Q 001358          645 -RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  723 (1092)
Q Consensus       645 -~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~  723 (1092)
                       .|++|+..+++... +                                                               
T Consensus       291 ~~i~~~d~~~~~~~~-l---------------------------------------------------------------  306 (415)
T 2hqs_A          291 PQVYKVNINGGAPQR-I---------------------------------------------------------------  306 (415)
T ss_dssp             CEEEEEETTSSCCEE-C---------------------------------------------------------------
T ss_pred             cEEEEEECCCCCEEE-E---------------------------------------------------------------
Confidence             45555654331100 0                                                               


Q ss_pred             eecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCC
Q 001358          724 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  803 (1092)
Q Consensus       724 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  803 (1092)
                                                                                               .  .+..
T Consensus       307 -------------------------------------------------------------------------~--~~~~  311 (415)
T 2hqs_A          307 -------------------------------------------------------------------------T--WEGS  311 (415)
T ss_dssp             -------------------------------------------------------------------------C--CSSS
T ss_pred             -------------------------------------------------------------------------e--cCCC
Confidence                                                                                     0  0223


Q ss_pred             CeeEEEEecCCCEEEEEe-C---CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCc
Q 001358          804 AVPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSS  876 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~  876 (1092)
                      .+.+++|+|||++|++++ +   ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++   .|++||+. +
T Consensus       312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g  387 (415)
T 2hqs_A          312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-G  387 (415)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-S
T ss_pred             cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-C
Confidence            455677788888777765 2   47999999988763 455554 899999999 899999888877   89999987 5


Q ss_pred             eeeEeeccccCCeEEEEEcCCCC
Q 001358          877 EVISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      +....+.+|.+.|.+++|+|.-.
T Consensus       388 ~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          388 RFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCEEECCCSSSEEEEEEECCCCC
T ss_pred             CcEEEeeCCCCCCcCCccccccc
Confidence            66788899999999999999653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.8e-23  Score=259.35  Aligned_cols=303  Identities=14%  Similarity=0.079  Sum_probs=213.5

Q ss_pred             CCCceEEeecCCCceEEEEEcC-cC-----cEEEEecCCCCceeeeeeeeeecccc-----cceeEEeeecCCCCcEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFKTALVRDPGVSVNRV  402 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~-d~-----~i~iwd~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~l~~h~~~V~~l  402 (1092)
                      ...|.+++|||||+ .|++++. |+     +|++||+.+++........-.....+     ........-......|.++
T Consensus        36 ~~~~~~~~~SpdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            34799999999999 4677766 87     89999999998654321100000000     0000000000000347899


Q ss_pred             EECCCCCEEEEEeCCCEEEEEEccCCC--CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          403 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +|||||++|++++. +.|++||+.++.  ...   .+..|...+.+++|||||+  .|+.++ ++.|++||+.+++....
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence            99999999999987 899999999882  232   3567888899999999999  677776 56999999999887655


Q ss_pred             EecCCcc----------------eEEEeecccCCccEEEEEecCC---------------------------------eE
Q 001358          481 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI  511 (1092)
Q Consensus       481 ~~~~~~~----------------v~~i~~~~~~~~~~l~s~~~dg---------------------------------~i  511 (1092)
                      ...+...                +.+++|  ++||++|++++.|+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            5444432                356777  55788899887765                                 78


Q ss_pred             EEEEcCC-CCceEEec--CCCCceEEEEEecCCCEEEEEec-CCCCceeEEEEeCCCCeEEEEEeeccccCC---ceEEE
Q 001358          512 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV  584 (1092)
Q Consensus       512 ~vwd~~~-~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~  584 (1092)
                      .+||+.+ ++......  .+...+..++| |||++|++... ....+..|++||..+++....+..+.  ..   .+..+
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~  342 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL  342 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence            8899887 66554433  35567899999 99999997764 23346789999999999887777654  12   34678


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECC-CCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeC-CC--eEEEEECC
Q 001358          585 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP  652 (1092)
Q Consensus       585 ~~~~~~~~l~~~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~  652 (1092)
                      +|+|+|+.+++++.+|.+++|.+. ++. ...+..+  ...+..+ +|+|+|+.++..+. ++  .++||++.
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            999999988889999988888765 344 5555433  2346666 59999998765544 44  78888765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.4e-22  Score=251.53  Aligned_cols=330  Identities=12%  Similarity=0.016  Sum_probs=236.5

Q ss_pred             ccceeEEEeeCCCCcEEEEEEeC-CC-----cEEEEECCCCceeEEEecCCcc------------------------eEE
Q 001358          441 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGAP------------------------VYS  490 (1092)
Q Consensus       441 ~~~v~~~~~s~d~~~l~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~~~~~------------------------v~~  490 (1092)
                      ...+.+++|||||+  .|++++. |+     .|++||+.+++....+..+...                        +.+
T Consensus        36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            44689999999999  7888887 88     8999999999887777655432                        677


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      ++|  ++||++|++++. +.|++||+.++.  ....+..+...+..++|||||++|++++.     +.|++||+.+++..
T Consensus       114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM  185 (741)
T ss_dssp             CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred             eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence            777  557889998886 999999998873  44456666778999999999999998863     36999999998876


Q ss_pred             EEEeeccc-------------cCCceEEEEEcCCCCEEEEEeCCC---------------------------------eE
Q 001358          569 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI  602 (1092)
Q Consensus       569 ~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~s~dg---------------------------------~i  602 (1092)
                      .....+..             ....+..++|+|||++|++++.|+                                 .|
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            65443320             001147799999999999987665                                 78


Q ss_pred             EEEECCC-CceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-----CCeEEEEECCCCCeeeecccccccceeeeecCCc
Q 001358          603 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1092)
Q Consensus       603 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~  676 (1092)
                      ++||+.+ ++.........+...+..++| |||++|++++.     +..|++||..+++.......+             
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------  331 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-------------  331 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence            9999988 876554432123345789999 99999987764     456777776654322111000             


Q ss_pred             ccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCC
Q 001358          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG  756 (1092)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg  756 (1092)
                                                                                                   .+ 
T Consensus       332 -----------------------------------------------------------------------------~~-  333 (741)
T 2ecf_A          332 -----------------------------------------------------------------------------SP-  333 (741)
T ss_dssp             -----------------------------------------------------------------------------CS-
T ss_pred             -----------------------------------------------------------------------------CC-
Confidence                                                                                         00 


Q ss_pred             eeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC-Cce
Q 001358          757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK  834 (1092)
Q Consensus       757 ~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~-~~~  834 (1092)
                                                                 .....+..++|+|||+++++++ +|.++||.+. +++
T Consensus       334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred             -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence                                                       0001233567888888666665 4666666554 344


Q ss_pred             eeEEecCCCCCeEEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-ceeeEeeccccCCeEEEEEcCCCCEEEEEeCC--
Q 001358          835 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD--  907 (1092)
Q Consensus       835 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~v~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D--  907 (1092)
                       ...+..+...+..+ +|+| +++.|+ +++.++  .++||++.. ++....+.. ...+..++|||||++|+....+  
T Consensus       371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~  447 (741)
T 2ecf_A          371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS  447 (741)
T ss_dssp             -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred             -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence             67777777788887 5999 777664 555555  899999875 665677775 6678999999999998876544  


Q ss_pred             --CcEEEEEcCCC
Q 001358          908 --AQIFVWDVDGW  918 (1092)
Q Consensus       908 --g~i~iwd~~~~  918 (1092)
                        ..+.+|+..++
T Consensus       448 ~p~~~~l~~~~~~  460 (741)
T 2ecf_A          448 TPPQIELFRANGE  460 (741)
T ss_dssp             EEEEEEEEETTSC
T ss_pred             CCCeEEEEEcCCC
Confidence              46889998654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.1e-23  Score=258.08  Aligned_cols=309  Identities=9%  Similarity=0.090  Sum_probs=221.7

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC---cEEEEEECCCCCEEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~la  412 (1092)
                      .+.+++|||||+ ++++ +.||+|++||+.+++....                   +.+|..   .|.+++|||||++||
T Consensus        18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~   76 (723)
T 1xfd_A           18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL   76 (723)
T ss_dssp             CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred             cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence            578899999999 5666 6889999999999986643                   445554   499999999999999


Q ss_pred             EEeCC---------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec
Q 001358          413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       413 s~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~  483 (1092)
                      +++.+         +.+.+||+.+++. .......+|...+.+++|||||+  .|+.++. +.|++||+.+++..+....
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence            99764         7889999999875 22222334555689999999999  5777764 7999999999988776655


Q ss_pred             CCcce------------------EEEeecccCCccEEEEEecCC----------------------------------eE
Q 001358          484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI  511 (1092)
Q Consensus       484 ~~~~v------------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i  511 (1092)
                      +...+                  .+++|  ++||+.|++++.|+                                  .|
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            44433                  66777  55788898887553                                  79


Q ss_pred             EEEEcCCCCceEEecCC------CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce----
Q 001358          512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----  581 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----  581 (1092)
                      ++||+.+++....+..+      ...+..++|+|||+++++.......+..|++||..+++....+..+.  ...+    
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~  308 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN  308 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence            99999887765555543      45789999999999987776544456789999999998877765543  1333    


Q ss_pred             EEEEEcCCCCEEEE--EeCCC------eEEEEE-CCCCce--EEEEeCCCCCCCCce-EEEccCCCEEEEEeCC---CeE
Q 001358          582 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI  646 (1092)
Q Consensus       582 ~~~~~~~~~~~l~~--~s~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i  646 (1092)
                      ..++|+|||+.|+.  +..++      .|++|| ..++..  ...+... . ..+.. ++|+|||+.|+..+.+   +.+
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~  386 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR  386 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence            37899999998775  44666      577777 344441  3333321 1 22343 6899999999877665   789


Q ss_pred             EEEECCCCC--eeeeccc---ccccceeeeecCC
Q 001358          647 KILETPESN--SVDAAGV---LSDNLRKLSVNPI  675 (1092)
Q Consensus       647 ~iw~~~~~~--~~~~~~~---~~~~v~~~~~~~~  675 (1092)
                      ++|++....  ....+..   +...+..++++|+
T Consensus       387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spd  420 (723)
T 1xfd_A          387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHS  420 (723)
T ss_dssp             EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTT
T ss_pred             EEEEEeCCCCCCcceecccccCCCCeEEEEECCC
Confidence            999986432  2233332   3444556666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=9.2e-23  Score=252.39  Aligned_cols=385  Identities=11%  Similarity=0.082  Sum_probs=254.8

Q ss_pred             ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC---------Ce
Q 001358          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV  601 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d---------g~  601 (1092)
                      .+.+++|+|||+++++ +.    ++.|++||..+++....+.++......+.+++|+|||++|++++.+         +.
T Consensus        18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            3567899999997755 32    5579999999999887777665211248999999999999998764         78


Q ss_pred             EEEEECCCCceEEEEeC-CCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccc
Q 001358          602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  680 (1092)
                      +++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+             
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~-------------  157 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV-------------  157 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence            89999999887 33332 222334788999999999999987 799999998775544332211110             


Q ss_pred             ccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeE
Q 001358          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL  759 (1092)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~  759 (1092)
                                          +..+..     -|-..              ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus       158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~  198 (723)
T 1xfd_A          158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (723)
T ss_dssp             --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence                                000000     00000              0011245789999999999888765 4666


Q ss_pred             EeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe
Q 001358          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI  839 (1092)
Q Consensus       760 lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~  839 (1092)
                      +|++....                    +           .+...+..+.|+++|..   ..+..|++||+.+++....+
T Consensus       199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred             eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence            77654211                    0           02234677888888763   12357999999998876666


Q ss_pred             cCC------CCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCceeeEeeccc-cCCeE----EEEEcCCCCEEEEE
Q 001358          840 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEGH-SKRVT----GLVFSDALNILVSS  904 (1092)
Q Consensus       840 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~h-~~~V~----~l~~spdg~~l~s~  904 (1092)
                      ..+      ...+..++||| |+++|++...    +..|++||+.++++...+..+ .+.+.    .++|||||+.|+..
T Consensus       245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            654      56789999999 8888877653    358999999999877666543 34343    78999999987754


Q ss_pred             --eCCC------cEEEEE-cCCCceeeeeeeecC-CCCcCCCCCceE-EEEecCCCEEEE-EeC---CcEEEEEcCCce-
Q 001358          905 --GGDA------QIFVWD-VDGWGIQTCRSLQTP-DGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-  968 (1092)
Q Consensus       905 --s~Dg------~i~iwd-~~~~~~~~~~~~~~~-~~~~~~~~~v~~-l~~s~dg~~la~-~~d---~~v~lwd~~~~~-  968 (1092)
                        ..++      .|.+|| ..+++..   +.... .+..    .+.. ++|||||+.|+. +.+   +.++||++.... 
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             EecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence              4666      466677 3433200   01111 1222    2444 699999999986 444   679999986432 


Q ss_pred             -eeeeeccC--CCcCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceEEee
Q 001358          969 -CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       969 -~~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~D-g--~i~vwd~~~~~~~~~~ 1016 (1092)
                       ....+...  |...+..++|||||++|+..... +  ...+++..++..+..+
T Consensus       397 ~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          397 FNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             CCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence             23222221  66778999999999988865432 2  3455676666554433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=1.8e-21  Score=215.54  Aligned_cols=281  Identities=10%  Similarity=0.067  Sum_probs=206.7

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC-CC
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH  418 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d~  418 (1092)
                      ..|++++++++++++.++.|.+||..+++.+..                   +..+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            457777877899999999999999999987754                   22345566 9999999998777765 88


Q ss_pred             EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-C--cEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      .|.+||+.+++..  ...+..+..+..+++|+|||+  +++++..+ +  .|.+||+.+++.+..+..+. ....++|++
T Consensus        63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~sp  137 (331)
T 3u4y_A           63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISP  137 (331)
T ss_dssp             EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECT
T ss_pred             eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECC
Confidence            9999999998751  224555666666699999999  56654444 3  89999999999988876544 457888855


Q ss_pred             cCCcc-EEEEEecCCe-EEEEEcCCCCceE----EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--
Q 001358          496 KENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--  567 (1092)
Q Consensus       496 ~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--  567 (1092)
                        +++ ++++...++. |.+|+++......    ...........++|+|||++++++..   .++.|.+||+.+++.  
T Consensus       138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT  212 (331)
T ss_dssp             --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred             --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence              665 4455566688 9999998655432    22233456789999999998777653   256799999999988  


Q ss_pred             -EEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce--EEEEeCC----CC-CCCCceEEEccCCCEEE
Q 001358          568 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA  638 (1092)
Q Consensus       568 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~  638 (1092)
                       +..+...    ..+..++|+|+++++++++ .++.|.+||..+++.  +..+...    .. ......++|+|+|++|+
T Consensus       213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  288 (331)
T 3u4y_A          213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF  288 (331)
T ss_dssp             EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred             eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence             6666643    4678899999999887665 578899999999887  4444322    11 11124589999999887


Q ss_pred             EEeC-CCeEEEEECCCC
Q 001358          639 VIAN-ENRIKILETPES  654 (1092)
Q Consensus       639 ~~~~-dg~i~iw~~~~~  654 (1092)
                      +++. ++.|.+|++...
T Consensus       289 v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          289 ISANISRELKVFTISGK  305 (331)
T ss_dssp             EEETTTTEEEEEETTSC
T ss_pred             EecCCCCcEEEEEecCC
Confidence            6665 579999999865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=4.5e-21  Score=236.33  Aligned_cols=238  Identities=9%  Similarity=-0.003  Sum_probs=166.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc-cceEEecccc-----------------cceeEEEeeCCCCcEEEEE
Q 001358          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT  460 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~~~~s~d~~~l~l~s  460 (1092)
                      +..+.|+  |+.+++++.++ | +||+.+|+.+ ..   +..|.                 ..|.+++|||| +  .++.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~   97 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL   97 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence            4457788  66777777888 8 9999998763 32   22332                 46999999999 5  3443


Q ss_pred             EeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCc----
Q 001358          461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG----  531 (1092)
Q Consensus       461 ~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~----  531 (1092)
                      +. ++.|++||+.+++... +..+...+.+++|+  +||+.|+++ .++.|++||+.+     ++...........    
T Consensus        98 ~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g  172 (706)
T 2z3z_A           98 FT-QGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG  172 (706)
T ss_dssp             EE-TTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred             EE-CCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence            33 5999999999887654 44567778888885  577888884 789999999988     6655443333332    


Q ss_pred             ----------eEEEEEecCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeEEEEEe
Q 001358          532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       532 ----------i~~~~~s~dg~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                                +.+++|+|||++|++++.+                             ...+..|++||+.+++......
T Consensus       173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~  252 (706)
T 2z3z_A          173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT  252 (706)
T ss_dssp             SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred             cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence                      4789999999999988732                             1246789999999988765543


Q ss_pred             eccccCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEEe-CCC--CCCCCceEEEcc--CCCEEEEEeC
Q 001358          573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN  642 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~~  642 (1092)
                      ... +...+..++|+||++++++++.++     .|++||+.+++....+. ...  ....+..++|+|  ||++++++..
T Consensus       253 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~  331 (706)
T 2z3z_A          253 GEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR  331 (706)
T ss_dssp             CSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred             CCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence            211 236789999999999999987765     89999999984433332 111  111246788999  8888888877


Q ss_pred             CCeEEEEECC
Q 001358          643 ENRIKILETP  652 (1092)
Q Consensus       643 dg~i~iw~~~  652 (1092)
                      ++.+++|.+.
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            7777777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=5.9e-21  Score=213.57  Aligned_cols=274  Identities=11%  Similarity=0.085  Sum_probs=213.1

Q ss_pred             CCceEEeecCCCceEEEEEcC------cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          335 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ..+..++|+|||++++++...      ++.|.+||..+++.+....                    ....+..++|+|||
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg  100 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT  100 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence            478899999999865555433      6789999999998775421                    22347789999999


Q ss_pred             CEEEEE-eCCCEEEEEEccCCCCccceEEeccccc---------ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001358          409 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1092)
Q Consensus       409 ~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~  478 (1092)
                      ++++++ ..++.|.+||..+++.+.   .+..+..         .+.+++|+|+++.+++...+.++.|.+||..+++.+
T Consensus       101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~  177 (353)
T 3vgz_A          101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK  177 (353)
T ss_dssp             TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred             CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence            976655 457899999999987654   3333322         278899999999522222246889999999999999


Q ss_pred             EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       479 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ..+..+...+..++|+  ++++++++++.++.|.+||..+.+....+..    +...+..++|+|+|++++++..   .+
T Consensus       178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~  252 (353)
T 3vgz_A          178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA  252 (353)
T ss_dssp             EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred             EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence            8887666667888885  4778899999999999999998877665554    3446788999999998887753   25


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      +.|.+||..+++.+..+....     ...++|+|+++++++++ .++.|.+||..+++.+..+....   .+..++|+|+
T Consensus       253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d  324 (353)
T 3vgz_A          253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD  324 (353)
T ss_dssp             SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred             CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence            679999999999988877543     25689999999777665 68999999999999988887653   3689999999


Q ss_pred             CCEEEEEeCCC
Q 001358          634 GTLLAVIANEN  644 (1092)
Q Consensus       634 ~~~l~~~~~dg  644 (1092)
                      |++++++..++
T Consensus       325 g~~l~v~~~~~  335 (353)
T 3vgz_A          325 GKTLYVSVKQK  335 (353)
T ss_dssp             SCEEEEEEECC
T ss_pred             CCEEEEEEccc
Confidence            99888776653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2.2e-21  Score=239.10  Aligned_cols=243  Identities=11%  Similarity=0.087  Sum_probs=170.2

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCC-----ceeeEEecCCCCC--------------eEEEEEcCCCCCEEEEEe-
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM-  863 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~lasg~-  863 (1092)
                      .+.+++|||||++|+++.++.|++||+.+     ++.......+...              +.+++||| |+++|++++ 
T Consensus       122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~  200 (706)
T 2z3z_A          122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM  200 (706)
T ss_dssp             CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred             cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence            34556788888888877778888888877     6655444333332              58999999 899999987 


Q ss_pred             --------------------------------CCCeEEEEEcCCceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC-
Q 001358          864 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA-  908 (1092)
Q Consensus       864 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg-  908 (1092)
                                                      .+..|++||+.+++......  .|...+.+++|+|||++|++++.|+ 
T Consensus       201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  280 (706)
T 2z3z_A          201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA  280 (706)
T ss_dssp             ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred             CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence                                            44689999999988655442  4777899999999999999988776 


Q ss_pred             ----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEec--CCCEEEEE-eCCcEEEEEcC-CceeeeeeccCCCcC
Q 001358          909 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP  980 (1092)
Q Consensus       909 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~-~d~~v~lwd~~-~~~~~~~~~~~h~~~  980 (1092)
                          .|++||+.+++..............   ..+..++|+|  ||++++++ .++.++||++. ++..+.. +..|...
T Consensus       281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~  356 (706)
T 2z3z_A          281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWE  356 (706)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSC
T ss_pred             CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeE
Confidence                8999999987322211111111111   1246789999  99988875 56778888876 5555555 4556777


Q ss_pred             EEE-EEEecCCCEEEEEeCC-C----cEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC--
Q 001358          981 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-- 1052 (1092)
Q Consensus       981 v~~-l~fs~dg~~l~t~s~D-g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-- 1052 (1092)
                      +.. ++|+|||+.|+.++.+ +    .|..||+.++... .+.         +...+  .+++|+| |+.++++++.+  
T Consensus       357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---------~~~~~--~~~~~sp-dg~~l~~~~~~~~  423 (706)
T 2z3z_A          357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT---------PESGM--HRTQLSP-DGSAIIDIFQSPT  423 (706)
T ss_dssp             EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC---------CSSSE--EEEEECT-TSSEEEEEEECSS
T ss_pred             EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc---------CCCce--EEEEECC-CCCEEEEEecCCC
Confidence            876 7999999988766554 3    6777787777532 222         12223  3688999 57777776554  


Q ss_pred             --CcEEEEecCCCC
Q 001358         1053 --GEVYVIEPNEPG 1064 (1092)
Q Consensus      1053 --g~v~~w~~~~~~ 1064 (1092)
                        +.|++||+...+
T Consensus       424 ~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          424 VPRKVTVTNIGKGS  437 (706)
T ss_dssp             CSCEEEEEESSSCE
T ss_pred             CCcEEEEEECCCCe
Confidence              469999986543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.2e-20  Score=207.86  Aligned_cols=277  Identities=14%  Similarity=0.151  Sum_probs=193.6

Q ss_pred             CceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC-CEEEEE
Q 001358          346 QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY  423 (1092)
Q Consensus       346 g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d-~~i~iw  423 (1092)
                      +++++++++.|+.|.+||+.. ++.....                  ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~   65 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY   65 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence            345677778899999999964 3322110                  22367789999999999999998876 899999


Q ss_pred             Ecc--CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC---CCceeEEEecCCcceEEEeecccCC
Q 001358          424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN  498 (1092)
Q Consensus       424 d~~--~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~  498 (1092)
                      ++.  +++. .....+..+. .+.+++|+|+++. +++++..++.|.+||+.   +++.+..+..+ ..+.+++|+  ++
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~d  139 (343)
T 1ri6_A           66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--PD  139 (343)
T ss_dssp             EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--TT
T ss_pred             EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--CC
Confidence            998  5442 2222344333 7899999999994 33444458899999994   34455555543 357778885  46


Q ss_pred             ccEEEEEe-cCCeEEEEEcCC-CCceE----EecC-CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeE--
Q 001358          499 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--  567 (1092)
Q Consensus       499 ~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~--  567 (1092)
                      ++++++++ .++.|.+||+.. +....    .... ....+..++|+|+|+++++++.   .++.|.+|+..  +++.  
T Consensus       140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred             CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence            67777776 899999999987 43321    2222 3447888999999998877652   25679999995  3443  


Q ss_pred             EEEEeecc---ccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECC--CC--ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358          568 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--KV--QLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       568 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ...+....   .....+..++|+|++++++++ ..++.|.+||+.  ++  +.+..+..+.   .+..++|+|+|++|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence            22222111   012356789999999988754 478999999998  33  3444454432   2789999999999888


Q ss_pred             Ee-CCCeEEEEECC
Q 001358          640 IA-NENRIKILETP  652 (1092)
Q Consensus       640 ~~-~dg~i~iw~~~  652 (1092)
                      ++ .++.+.+|++.
T Consensus       294 ~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          294 AGQKSHHISVYEIV  307 (343)
T ss_dssp             ECTTTCEEEEEEEE
T ss_pred             ecCCCCeEEEEEEc
Confidence            88 57999999554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.6e-20  Score=207.36  Aligned_cols=205  Identities=10%  Similarity=0.161  Sum_probs=144.2

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEc---CCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-c
Q 001358          804 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S  876 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-~  876 (1092)
                      .+..++|+|+|+++++++  ++.|.+||+   .+.+.+..+..+ ..+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence            456788888888776665  577999988   444455555533 4688999999 888787777 899999999987 6


Q ss_pred             eeeE----eecc-ccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358          877 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       877 ~~~~----~l~~-h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                      +...    .+.. ....+.+++|+|++++|+.++ .++.|.+|++..  ++......+............+..++|+|||
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  242 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG  242 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence            5432    2232 345788999999999776554 789999999954  4433223333222211111356789999999


Q ss_pred             CEEEE-E-eCCcEEEEEcC--Cc--eeeeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEC--CCCce
Q 001358          949 TRFLL-V-HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNLEV 1012 (1092)
Q Consensus       949 ~~la~-~-~d~~v~lwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~vwd~--~~~~~ 1012 (1092)
                      ++|++ . .++.|.+||+.  ++  +.+.. ...+. .+..++|+|||++|++++ .++.|.+|++  .+|++
T Consensus       243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          243 RHLYACDRTASLITVFSVSEDGSVLSKEGF-QPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCCEEEEEE-EECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             CEEEEEecCCCEEEEEEEcCCCCceEEeee-ecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence            98886 3 57899999998  33  33333 22233 388999999999988887 5799999955  46644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=4.1e-20  Score=205.14  Aligned_cols=278  Identities=13%  Similarity=0.096  Sum_probs=204.2

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCCeeeeccccccccee
Q 001358          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~  669 (1092)
                      +++++++.++.|++||..+++.+..+........+..++|+|+|+++++ +..++.|.+||..+++....+.....    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence            4688899999999999999999888875432113678999999987654 45578999999887644332210000    


Q ss_pred             eeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEE
Q 001358          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  749 (1092)
                                                                                                  +   
T Consensus        78 ----------------------------------------------------------------------------~---   78 (337)
T 1pby_B           78 ----------------------------------------------------------------------------E---   78 (337)
T ss_dssp             ----------------------------------------------------------------------------T---
T ss_pred             ----------------------------------------------------------------------------c---
Confidence                                                                                        0   


Q ss_pred             EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE---------
Q 001358          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---------  820 (1092)
Q Consensus       750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~---------  820 (1092)
                                                                        .+...+.+++|+|||++++++         
T Consensus        79 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           79 --------------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELT  108 (337)
T ss_dssp             --------------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred             --------------------------------------------------cccccccceEECCCCCEEEEEecccccccc
Confidence                                                              000012234555555555554         


Q ss_pred             ----eCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc--CCeEEEEE
Q 001358          821 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS--KRVTGLVF  894 (1092)
Q Consensus       821 ----sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~  894 (1092)
                          .++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++  ++.|++||+.+++.+..+..+.  .+   +.|
T Consensus       109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~  181 (337)
T 1pby_B          109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYA  181 (337)
T ss_dssp             CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBC
T ss_pred             cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---cee
Confidence                358899999999988877764 45678899999 88888877  6899999999999887776544  33   378


Q ss_pred             cCCCCEEEEEeCCC------------------------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358          895 SDALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       895 spdg~~l~s~s~Dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      +||++.++..+.++                        .|.+||+.+++... .....   +.   ..+.+++|+|||++
T Consensus       182 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~  254 (337)
T 1pby_B          182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTR  254 (337)
T ss_dssp             CCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSE
T ss_pred             CCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCE
Confidence            99998776554332                        46899999877541 11211   11   24778999999999


Q ss_pred             EEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          951 FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       951 la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      ++++ ++.|.+||+.+++.+..+..  ...+.+++|+|||++|++++.++.|.+||+.+++.+..+..
T Consensus       255 l~~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          255 AFGA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEe-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            9888 79999999999988776443  34678999999999999999999999999999999888763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.9e-20  Score=206.38  Aligned_cols=280  Identities=10%  Similarity=0.051  Sum_probs=207.8

Q ss_pred             EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC-cEEEEEECCCCCEEEEE-eCCCEEEEEEcc
Q 001358          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGVA-YSKHIVQLYAYH  426 (1092)
Q Consensus       349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-~V~~l~~spdg~~las~-~~d~~i~iwd~~  426 (1092)
                      ++++++.+++|.+||+.+++.+....                  .++.. .+..++|+|||++++++ +.++.|.+||+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            68889999999999999988765421                  12222 47889999999877554 567899999999


Q ss_pred             CCCCccceEEecc---cccceeEEEeeCCCCcEEEEEEe------------CCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       427 ~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      +++.+... ....   |...+.+++|+|||+  .+++++            .++.|.+||+.+++.+..+.. ...+..+
T Consensus        65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence            98755422 1111   233678899999999  455554            579999999999998887764 4457777


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC------------------
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------  553 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------------------  553 (1092)
                      +|+  +++++|+++  ++.|.+||+.+.+....+...... ..+.|+|||+.++..+.....                  
T Consensus       141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T 1pby_B          141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence            774  466777777  689999999988776655543310 123789999877655431110                  


Q ss_pred             --ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          554 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       554 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                        ...|.+||..+++.. .+.... +...+..++|+|++++++++  ++.|++||+.+++.+..+....   .+.+++|+
T Consensus       216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s  288 (337)
T 1pby_B          216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS  288 (337)
T ss_dssp             GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred             ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence              014799999998875 322211 22568899999999999888  7999999999999888887543   46899999


Q ss_pred             cCCCEEEEEeCCCeEEEEECCCCCeeeeccc
Q 001358          632 KNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       632 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      |+|+++++++.++.|.+||+.+++.+..+..
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            9999999999999999999999887766653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=1.1e-19  Score=201.16  Aligned_cols=284  Identities=11%  Similarity=0.034  Sum_probs=195.5

Q ss_pred             EEecCCcE-EEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEE
Q 001358          741 TYNNGGQA-IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS  819 (1092)
Q Consensus       741 ~~s~~g~~-l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~  819 (1092)
                      .|.+++.. +++...++.|.+|+...                      ++.......    +...+ .++|+|||+++++
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~----~~~~~-~~~~s~dg~~l~~   56 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQITL----GYDFV-DTAITSDCSNVVV   56 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEEC----CCCEE-EEEECSSSCEEEE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEEc----cCCcc-eEEEcCCCCEEEE
Confidence            35555555 55666678888887543                      332333322    34445 9999999997777


Q ss_pred             Ee--CCeEEEEEcCCcee-eEEecCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCceeeEeeccccCCeEEEE
Q 001358          820 AS--GGVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSEVISKLEGHSKRVTGLV  893 (1092)
Q Consensus       820 ~s--dg~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~  893 (1092)
                      ++  ++.|.+||..+++. ...+..+.....+++|+| ++++|+++..++   .|.+||+.+++.+..+..+ ..+.+++
T Consensus        57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~  134 (331)
T 3u4y_A           57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA  134 (331)
T ss_dssp             EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred             EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence            65  57999999999987 777766666665699999 899888655553   8999999999988887754 4578999


Q ss_pred             EcCCCCEEEEE-eCCCc-EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCcee
Q 001358          894 FSDALNILVSS-GGDAQ-IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC  969 (1092)
Q Consensus       894 ~spdg~~l~s~-s~Dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~  969 (1092)
                      |+|||++|+++ ..++. |.+|++.................    ..+..++|+|||++++++  .++.|.+||+.+++.
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            99999865554 55688 99999986432211111111111    247899999999977663  467899999998887


Q ss_pred             ---eeeeccCCCcCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCce--EEeeccccccCCCCccCccc-ceEEEECCCC
Q 001358          970 ---LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEV--QCRILSTAYLRPTTSCLHVY-PHAIAAHPLK 1042 (1092)
Q Consensus       970 ---~~~~~~~h~~~v~~l~fs~dg~~l~t~s-~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~-~~~~~~~p~~ 1042 (1092)
                         +..+.  +...+..++|+|||++|++++ .++.|.+||+.+++.  +..+.......    ..... ...++|+|+ 
T Consensus       211 ~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~spd-  283 (331)
T 3u4y_A          211 ITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID----PRPLFGANQMALNKT-  283 (331)
T ss_dssp             CEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC----CGGGTTCCCEEECTT-
T ss_pred             cceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC----CCCcccccceEECCC-
Confidence               65533  346778899999999776655 478899999999987  33332111011    11111 134789994 


Q ss_pred             CCEEEEE-eCCCcEEEEecCCCC
Q 001358         1043 PTQFAVG-LTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1043 ~~~l~~~-~~dg~v~~w~~~~~~ 1064 (1092)
                      +.+|+++ ..++.|.+||+....
T Consensus       284 g~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          284 ETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCEEEEecCCCCcEEEEEecCCc
Confidence            6666554 456799999997544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=8.9e-21  Score=206.01  Aligned_cols=257  Identities=14%  Similarity=0.121  Sum_probs=188.0

Q ss_pred             EEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC-CCC
Q 001358          352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD  430 (1092)
Q Consensus       352 sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~-~~~  430 (1092)
                      .++.|++|++||+.+++...                    +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred             CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence            44678999999999887553                    345788999999999999999986 77899999998 764


Q ss_pred             ccceEEeccc-ccceeEEEeeCCCCcEEEEEEe--CCCcEEEE--ECCCCceeEEEecCCcceEEEeecccCCccEEE-E
Q 001358          431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S  504 (1092)
Q Consensus       431 ~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s  504 (1092)
                      ..   ...+| ...+.+++|+||++  .+++++  .++...||  +..+++ ...+..+. .+..++|++  +++.|+ +
T Consensus        76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~  146 (297)
T 2ojh_A           76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC  146 (297)
T ss_dssp             EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred             eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence            43   23344 46789999999999  677777  33445555  545554 44454343 477888854  666666 7


Q ss_pred             EecCCeEEEEEcCCC-CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC-CCeEEEEEeeccccCCceE
Q 001358          505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS  582 (1092)
Q Consensus       505 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~  582 (1092)
                      ++.++.+++|+++.. .....+..+...+.+++|+|+|+++++++..   ++.+.+|+.. .+.....+..+.   ..+.
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~  220 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW  220 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence            889999999997543 3445566677789999999999998877631   3346666654 344555666555   6788


Q ss_pred             EEEEcCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       583 ~~~~~~~~~~l~~~s~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .++|+|++++|++++.+           +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99999999999888765           569999999887654443222234588899999999999887753

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=2.3e-19  Score=200.59  Aligned_cols=249  Identities=13%  Similarity=0.125  Sum_probs=195.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-------CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEE
Q 001358          396 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~-------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~  468 (1092)
                      ...+..++|+|||++|++++.       ++.|.+||..+++.+..   +. ....+..++|+|+|+. ++++...++.|.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~  114 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT  114 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence            356889999999999988874       56899999999875553   32 2345788999999985 456667789999


Q ss_pred             EEECCCCceeEEEecCCcc---------eEEEeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001358          469 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~  537 (1092)
                      +||..+++.+..+..+...         +..+++++  ++.++++++  .++.|.+||..+.+....+......+..++|
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  192 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL  192 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence            9999999998888765432         57788854  556666655  5789999999988887777755666788999


Q ss_pred             ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-cCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEE
Q 001358          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~s~-dg~i~iwd~~~~~~~~~  615 (1092)
                      +|+|++++++..    ++.|.+||..+++.+..+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus       193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            999999998864    56799999999999887765221 2356788999999998877664 59999999999999888


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeee
Q 001358          616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA  659 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~  659 (1092)
                      +....    ...++|+|+|++++++. .++.|.+||..+++.+..
T Consensus       269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            87543    25799999999766665 689999999987755443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.4e-20  Score=232.31  Aligned_cols=378  Identities=12%  Similarity=0.041  Sum_probs=244.2

Q ss_pred             EEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC---------CCeEEE
Q 001358          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI  604 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~i  604 (1092)
                      .++|+|||++++++ .    ++.|++||..+++....+.++......+.+++|+|||++|++++.         ++.|++
T Consensus        20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            57899999655543 2    557999999999988777765411124889999999999998876         789999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccccc
Q 001358          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA  684 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  684 (1092)
                      ||+.+++.+......   ..+..++|||||+.|+.+. ++.|++|++.+++..........                   
T Consensus        95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~-------------------  151 (719)
T 1z68_A           95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE-------------------  151 (719)
T ss_dssp             EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred             EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence            999998763111111   3478899999999999986 68999999987754432210000                   


Q ss_pred             CCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeEEeee
Q 001358          685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW  763 (1092)
Q Consensus       685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~  763 (1092)
                                    ..+..|..+   .++.-                .-.....+++|||||+.|+.++.| +.+.+|.+
T Consensus       152 --------------~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~  198 (719)
T 1z68_A          152 --------------NKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY  198 (719)
T ss_dssp             --------------TTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             --------------CCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence                          000000000   00000                001123478999999999988765 55556654


Q ss_pred             cCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceee-------
Q 001358          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-------  836 (1092)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~-------  836 (1092)
                      .....                               .+...+..+.+...|..   .....|++||+.+++..       
T Consensus       199 ~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~  244 (719)
T 1z68_A          199 SYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV  244 (719)
T ss_dssp             EECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred             eccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence            32100                               02223444555444431   01247999999988753       


Q ss_pred             -EEecCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCceeeEee----ccccCCeE-----EEEEcCCC
Q 001358          837 -LTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL  898 (1092)
Q Consensus       837 -~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spdg  898 (1092)
                       ..+.+|...+..++||| |++++++....    ..|.+||    +.++++...+    .+|.+.+.     .++|||||
T Consensus       245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence             12335777899999999 78877775433    2588999    8888877666    46777776     89999999


Q ss_pred             CEEEE--EeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----CcEEEEEcCC--
Q 001358          899 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE--  966 (1092)
Q Consensus       899 ~~l~s--~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~~v~lwd~~~--  966 (1092)
                      +.|+.  ...+|  .|.+||+.+++..   .+.  .+.    ..+..+.++ +++.|+. +.+     +..++|.+..  
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt--~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~  393 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVENAI---QIT--SGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS  393 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTTCE---ECS--CSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred             CeEEEEEEccCCceEEEEEECCCCceE---ecc--cCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence            96654  44555  4667777665421   121  121    146778888 8888877 443     6788887753  


Q ss_pred             cee-eeee---ccCCCcCEEEEEEecCCCEEEE-EeCC--CcEEEEECCCCceEEeec
Q 001358          967 LTC-LKQW---FPISSVPISQATFSCDCRMVFT-SFVD--GTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       967 ~~~-~~~~---~~~h~~~v~~l~fs~dg~~l~t-~s~D--g~i~vwd~~~~~~~~~~~ 1017 (1092)
                      +.. ...+   +.+|...+..+.|||||++++. ++.+  ..+.+||+.+++....+.
T Consensus       394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            421 1221   2236677889999999987774 4433  468999999887655443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=5.8e-20  Score=220.42  Aligned_cols=272  Identities=12%  Similarity=0.074  Sum_probs=197.9

Q ss_pred             CCCceEEeecCCCceEEEEEcC-cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEECCCCCEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL  411 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~-d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~l  411 (1092)
                      ..+|++++|||||++ ||+++. ||++.||++.+++...                    +..|. ..|..++|||| +.+
T Consensus        21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l   78 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI   78 (582)
T ss_dssp             HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred             ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence            447999999999995 666555 9999999997665443                    44455 68999999999 777


Q ss_pred             EEEeC---CCEEEEEEccC--CCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       412 as~~~---d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ++++.   +....+|.+..  .....   .+..+. .+...+|+|||+.+++++++.++ +.+||+++++.......+. 
T Consensus        79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~-  152 (582)
T 3o4h_A           79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG-  152 (582)
T ss_dssp             EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred             EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence            77765   44566665543  21111   222222 34467999999875666666555 4599999987765554333 


Q ss_pred             ceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                        .+++|+  +||++|++++.+    +.|++||+.+++.. .+..+...+..++|||||+.|+++..  ++...|++||.
T Consensus       153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~  225 (582)
T 3o4h_A          153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP  225 (582)
T ss_dssp             --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred             --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence              666664  578899988877    78999999887655 55667778899999999999995443  33458999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEE--------EcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      .+++.. .+.++.   ..+..+.        |+|||..+++++.++++++|++  |+....   .  ...+.+++|+ ++
T Consensus       226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~--~~~v~~~~~s-dg  293 (582)
T 3o4h_A          226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---P--QGNHGRVVLW-RG  293 (582)
T ss_dssp             TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---C--SSEEEEEEEE-TT
T ss_pred             CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---C--CCceEEEEec-CC
Confidence            999887 666654   4555556        9999988888999999999999  655441   1  1347789999 99


Q ss_pred             CEEEEEeCCCe---EEEEECC
Q 001358          635 TLLAVIANENR---IKILETP  652 (1092)
Q Consensus       635 ~~l~~~~~dg~---i~iw~~~  652 (1092)
                      +++++++.+..   +.+|+..
T Consensus       294 ~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          294 KLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTC
T ss_pred             EEEEEEcCCCCCCeEEEEcCC
Confidence            99988887644   5666654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=1.2e-19  Score=196.94  Aligned_cols=245  Identities=11%  Similarity=0.075  Sum_probs=181.6

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCC-CCceeeeeeeeeecccccceeEEeeecCC-CCcEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNR  401 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~  401 (1092)
                      ......+..|...|.+++|+|||+ +|++++ ++.|.+||+.+ ++....                   ..+| ...|.+
T Consensus        31 ~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~   89 (297)
T 2ojh_A           31 TRKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNND   89 (297)
T ss_dssp             TTEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSC
T ss_pred             CCceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccc
Confidence            334456667888999999999999 566665 78999999998 776542                   3334 478899


Q ss_pred             EEECCCCCEEEEEe--CCCEEEEE--EccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC-CCc
Q 001358          402 VVWSPDGSLLGVAY--SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGS  476 (1092)
Q Consensus       402 l~~spdg~~las~~--~d~~i~iw--d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~  476 (1092)
                      ++|+|||++|++++  .++.+.||  +..++. ..   .+..+. .+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence            99999999999998  33445555  445543 21   333333 4889999999994 34478889999999853 233


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceEEecCCCCceEEEEEecCCCEEEEEecCCC--
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--  552 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--  552 (1092)
                      ....+..+...+.+++|++  ++.+|+.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.  
T Consensus       164 ~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  241 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF  241 (297)
T ss_dssp             CEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred             cceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence            4456677888899999954  667776665 59999999987 45556667777778999999999999998876432  


Q ss_pred             -----CceeEEEEeCCCCeEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCCC
Q 001358          553 -----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       553 -----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~dg  600 (1092)
                           ....|++||+.+++.....  .++.   ..+..++|+|++++|++++.+.
T Consensus       242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SCCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred             cccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence                 2467999999988764433  3555   6788899999999998877553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=1.8e-18  Score=192.76  Aligned_cols=249  Identities=12%  Similarity=0.145  Sum_probs=170.2

Q ss_pred             CCCCeeEEEEecCCCEEEEEe---CCeEEEEEcCCce--eeEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001358          801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR  874 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~  874 (1092)
                      +...+..++|+|||+++++..   ++.|.+|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345567899999999444443   3789999998765  4444455677889999999 888888887 78999999996


Q ss_pred             C-c--eeeEeecc---------ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCceE
Q 001358          875 S-S--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH  941 (1092)
Q Consensus       875 ~-~--~~~~~l~~---------h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1092)
                      . +  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence            3 3  23333321         12348899999999977777778899999998 444332222222222     24678


Q ss_pred             EEEecCCCEEEEE--eCCcEEEEEcCC--ceeeee-eccCC------CcCEEEEEEecCCCEE-EEEeCCCcEEEEECCC
Q 001358          942 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPIS------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       942 l~~s~dg~~la~~--~d~~v~lwd~~~--~~~~~~-~~~~h------~~~v~~l~fs~dg~~l-~t~s~Dg~i~vwd~~~ 1009 (1092)
                      ++|+|||++|+++  .++.+.+|++..  ++.... .....      ...+..++|+|||++| ++...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999977774  467899999874  443211 11111      1458899999999987 4556689999999973


Q ss_pred             C---ceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCC-CcEEEEecCCCCCc
Q 001358         1010 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1066 (1092)
Q Consensus      1010 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~~w~~~~~~~~ 1066 (1092)
                      .   ..+..+.      ..  .  -.+..++|+| |+++|++++.+ +.|.+|++....++
T Consensus       272 ~g~~~~~~~~~------~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          272 DGHLTLIQQIS------TE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             GGCEEEEEEEE------CS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCcEEEeEEEe------cC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            3   2232222      10  1  2345789999 57877777754 89999987654443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=4.7e-20  Score=227.62  Aligned_cols=279  Identities=14%  Similarity=0.078  Sum_probs=197.4

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC---cEEEEEECCCCCEEEEE
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~---~V~~l~~spdg~~las~  414 (1092)
                      ..++|+|||+ +++++ .|++|++||+.+++....                   +.+|..   .|.+++|||||++||++
T Consensus        19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~   77 (719)
T 1z68_A           19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE   77 (719)
T ss_dssp             CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred             CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence            3789999996 66665 589999999999986643                   223332   48899999999999998


Q ss_pred             eC---------CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecC
Q 001358          415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH  484 (1092)
Q Consensus       415 ~~---------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~  484 (1092)
                      +.         ++.|++||+.+++.+... .+   ...+.+++|||||+  .|+.+. ++.|++||+.+++..+.. .++
T Consensus        78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~  150 (719)
T 1z68_A           78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR  150 (719)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred             ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence            76         689999999998652100 12   35688999999999  566665 789999999988765432 233


Q ss_pred             Ccce-----------------EEEeecccCCccEEEEEecCC----------------------------------eEEE
Q 001358          485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA  513 (1092)
Q Consensus       485 ~~~v-----------------~~i~~~~~~~~~~l~s~~~dg----------------------------------~i~v  513 (1092)
                      ...|                 .+++|  ++||++|++++.|.                                  .|++
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            2222                 36777  56888999887652                                  7889


Q ss_pred             EEcCCCCce--EE------ecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEe----CCCCeEEEEE----eecccc
Q 001358          514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ  577 (1092)
Q Consensus       514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~  577 (1092)
                      ||+.++...  ..      +..+...+..++|+||++.+++..........|++||    ..+++....+    .++.  
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~--  306 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT--  306 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence            999876642  12      2346667899999999887776544334456799999    8888776655    3444  


Q ss_pred             CCceE-----EEEEcCCCCEEEE--EeCCC--eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC-----
Q 001358          578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----  643 (1092)
Q Consensus       578 ~~~v~-----~~~~~~~~~~l~~--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----  643 (1092)
                       ..+.     .+.|+|+|+.++.  ...+|  .|++||+.+++. ..+..+  ...+..+.++ +++.++..+.+     
T Consensus       307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~  381 (719)
T 1z68_A          307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP  381 (719)
T ss_dssp             -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred             -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence             4454     7889999997655  33455  577778877763 334322  2235667777 88887777765     


Q ss_pred             CeEEEEECCC
Q 001358          644 NRIKILETPE  653 (1092)
Q Consensus       644 g~i~iw~~~~  653 (1092)
                      +..++|.+..
T Consensus       382 ~~~~l~~~~~  391 (719)
T 1z68_A          382 GRRNIYRISI  391 (719)
T ss_dssp             TCBEEEEEEC
T ss_pred             ceEEEEEEeC
Confidence            7888887754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.84  E-value=9.6e-19  Score=194.92  Aligned_cols=277  Identities=12%  Similarity=0.098  Sum_probs=183.3

Q ss_pred             ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec---CCeeEEeeecCCccccCcccccccCCccc
Q 001358          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1092)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~---dg~i~lw~~~~~~~~~~~~~~~~~~~~~~  783 (1092)
                      ++.+.+|+++..... ...+.  ...+...+..++|+|+|+ +++++.   ++.+.+|++.....               
T Consensus        15 ~~~i~v~~~d~~tg~-~~~~~--~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~---------------   75 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKT-LTNDG--LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA---------------   75 (347)
T ss_dssp             CCEEEEEEEETTTTE-EEEEE--EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE---------------
T ss_pred             CCCEEEEEEcCCCCe-EEEee--eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE---------------
Confidence            456778887642221 11111  112345667899999999 666654   58999998754321               


Q ss_pred             cCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcC-C--ceeeEEecCC---------CCCeEEE
Q 001358          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM-T--FKTILTIMPP---------SPTATSL  849 (1092)
Q Consensus       784 ~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~-~--~~~~~~~~~~---------~~~i~~l  849 (1092)
                             .....+.  .+...+..++|+|||++|++++  ++.+.+|++. +  .+.+..+...         ...+.++
T Consensus        76 -------~~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~  146 (347)
T 3hfq_A           76 -------HKLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYT  146 (347)
T ss_dssp             -------EEEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEE
T ss_pred             -------EEeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEE
Confidence                   0000000  1455678999999999888887  5889999996 2  3333333221         2348899


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcC-Cceee--Eeeccc-cCCeEEEEEcCCCCEEEE-EeCCCcEEEEEcCC--Cceee
Q 001358          850 AFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQT  922 (1092)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~spdg~~l~s-~s~Dg~i~iwd~~~--~~~~~  922 (1092)
                      +|+| +++++++...++.|++|++. +++..  ..+..+ ...+..++|+|||++|++ ...++.|.+|+++.  ++...
T Consensus       147 ~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  225 (347)
T 3hfq_A          147 DLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQ  225 (347)
T ss_dssp             EECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEE
Confidence            9999 77777777778999999998 55432  222222 336788999999996665 55788999999885  44332


Q ss_pred             eeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-eCCcEEEEEcCC-c--eeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358          923 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       923 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~d~~v~lwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      ...+............+..++|+|||++|++ . .++.|.+|++.. +  +.+.. ...+...+..++|+|||++|++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEEE
T ss_pred             eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEEE
Confidence            2233332222111124788999999998865 3 478999999973 2  33333 334566788999999999998887


Q ss_pred             CC-CcEEEE--ECCCCceE
Q 001358          998 VD-GTLSIH--EASNLEVQ 1013 (1092)
Q Consensus       998 ~D-g~i~vw--d~~~~~~~ 1013 (1092)
                      .+ +.|.+|  |..+|++.
T Consensus       305 ~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          305 QNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             TTTTEEEEEEECTTTCCEE
T ss_pred             cCCCcEEEEEEeCCCCeEE
Confidence            65 899999  55567665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=6.1e-19  Score=200.06  Aligned_cols=309  Identities=10%  Similarity=0.015  Sum_probs=203.0

Q ss_pred             cccCCCcceeEecccCCCCceE-----EeecCCCceEEEEEcCcC--cEEEEecCCCCceeeeeeeeeecccccceeEEe
Q 001358          318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA  390 (1092)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~  390 (1092)
                      +++.........|..|...+..     .+|||||++++.++..++  .|.+||+.+++....                  
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------   75 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------   75 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence            4444445667778888766666     899999996555544466  488889988876542                  


Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEE--EeeCCCCcEEEEEE-------
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL--AFSAPCKQISVITC-------  461 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~--~~s~d~~~l~l~s~-------  461 (1092)
                       ..+|...+..++|||||++|++++.++.|++||+.+++...   ....+...+...  .++||++  .++..       
T Consensus        76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~  149 (388)
T 3pe7_A           76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW  149 (388)
T ss_dssp             -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred             -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence             34455555578899999999999999999999999986443   233444444433  3489998  45432       


Q ss_pred             ---------------eCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCC
Q 001358          462 ---------------GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG  520 (1092)
Q Consensus       462 ---------------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~  520 (1092)
                                     +.+..|.+||+.+++.. .+..+...+..+.|+|. |++.|+....+      ..|.++|.....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                           24468999999998754 44456677888888541 66777777653      367777776654


Q ss_pred             ceEEecCCC-CceEEEEEecCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE--EeeccccCCceEEEEEcCCCCEEEEE
Q 001358          521 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA  596 (1092)
Q Consensus       521 ~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~  596 (1092)
                      ......... ..+..++|+|||+.|+..+... .....|++||+.+++....  +.++...........|+|+|+.++..
T Consensus       228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            443333222 3577889999999887665432 2234599999999875433  22210000001123689999988754


Q ss_pred             ---------eCCCeEEEEECCCCceEEEEeCCCCCC--------CCceEEEccCCCEEEEEeC-CCeEEEEECC
Q 001358          597 ---------GDDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP  652 (1092)
Q Consensus       597 ---------s~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~  652 (1092)
                               ..+..|++||+.+++............        .+..++|+|||+.|+..+. +|...||.+.
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                     456789999999887644433322100        3678899999998887765 5666666543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=6.7e-19  Score=216.89  Aligned_cols=279  Identities=14%  Similarity=0.119  Sum_probs=186.9

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC-----cEEEEEECCCCC
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS  409 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~  409 (1092)
                      .....++|+|||+ +++++  |++|++||+.+|+....                   +.+|..     ....++|||||+
T Consensus        17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred             ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence            3567899999997 67776  89999999999986543                   444543     234488999999


Q ss_pred             EEEEEeCC---------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      +|++++.+         +.+.+||+.+++...    +..|.+.+...+|||||+  .|+.+. |+.|++||+.+++..+.
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence            99999876         567799999986443    567788899999999999  466654 78999999988875542


Q ss_pred             -EecCCcce-----------------EEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEecCC
Q 001358          481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1092)
Q Consensus       481 -~~~~~~~v-----------------~~i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1092)
                       ..++...+                 ..+.|  ++||+.|+.++.|.+ +.+|++.......   .+...+..+.+.+.|
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence             22332222                 23556  668889988876655 8888764221110   123355667777776


Q ss_pred             CEEEEEecCCCCceeEEEEeCCC---Ce--EEEEEeecc---ccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCC
Q 001358          542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK  609 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~  609 (1092)
                      ..        .....|++||+.+   ++  ....+....   .+...+..++|+||++.++...    .+..|++||+.+
T Consensus       223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence            43        1244699999998   73  222332200   1236789999999998766643    234799999998


Q ss_pred             Cc----eE--EEE--eCCCCCCC---CceEEEccCCCEEE-EEeC-C--CeEEEEECCCCC
Q 001358          610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN  655 (1092)
Q Consensus       610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~  655 (1092)
                      ++    +.  ..+  ..+.....   ...++|+|||+.++ ..+. +  ..|++|+..++.
T Consensus       295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            87    11  111  22221111   23789999999887 6654 3  457777776543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.2e-17  Score=187.07  Aligned_cols=300  Identities=13%  Similarity=0.126  Sum_probs=195.9

Q ss_pred             ecCCCceEEEEEc----CcCcEEEEec--CCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          342 FHPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       342 ~spdg~~llasg~----~d~~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ..+... .+.+|+    .++.|.+|++  .+|+.....                  .. +...+..++|+|||++|++++
T Consensus         9 ~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~   68 (361)
T 3scy_A            9 TTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVN   68 (361)
T ss_dssp             GGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEE
T ss_pred             hCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEE
Confidence            344443 455554    3567888876  445443210                  11 567788899999999999998


Q ss_pred             CC----CEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE------ec-
Q 001358          416 SK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG-  483 (1092)
Q Consensus       416 ~d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~------~~-  483 (1092)
                      .+    +.|.+|++... ..+........+......+++  +++. ++++...++.|.+|++.+...+..+      .+ 
T Consensus        69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  145 (361)
T 3scy_A           69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGS  145 (361)
T ss_dssp             CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred             ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence            75    79999998763 223333344445556777787  7773 3444457889999999754333211      11 


Q ss_pred             -------CCcceEEEeecccCCccEEEEEe-cCCeEEEEEcCCCCc------e-------EEecCCCCceEEEEEecCCC
Q 001358          484 -------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       484 -------~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~~~~s~dg~  542 (1092)
                             +...+.+++|+  ++++++++++ .++.|++|+++....      .       ............++|+|||+
T Consensus       146 ~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~  223 (361)
T 3scy_A          146 GPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK  223 (361)
T ss_dssp             CSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred             CCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence                   12234667884  5777665544 589999999886542      1       22233445678999999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeC--CCeEEEEECC--CCc--eEE
Q 001358          543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LLT  614 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~--~~~--~~~  614 (1092)
                      +++++..   .++.|.+|++.+++..  ..+.....+......++|+|++++++++..  ++.|.+|++.  +++  .+.
T Consensus       224 ~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          224 FAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             EEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEee
Confidence            8887763   2567999999877653  333332222245689999999999977665  4899999985  455  344


Q ss_pred             EEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECC--CCCeeeec-ccccccceeeee
Q 001358          615 TIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV  672 (1092)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~v~~~~~  672 (1092)
                      .+..   ...+..++|+|+|++|++++ .++.|.+|++.  +++..... ..+.....|+.|
T Consensus       301 ~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          301 YQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             EEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             EecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            4443   23478999999999998887 57899996554  55544333 223344555554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.4e-17  Score=186.59  Aligned_cols=312  Identities=10%  Similarity=0.093  Sum_probs=195.2

Q ss_pred             cCCCEEEEEecCCCCceeEEEEeC--CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CeEEEEECCC--C
Q 001358          539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V  610 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~--~  610 (1092)
                      +...+++.++.....+..|++|.+  .+++.......+   ...+..++|+|++++|++++.+    +.|.+|++..  +
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            334456666544334556777754  667654443333   3677889999999999998875    7999998765  4


Q ss_pred             ceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCcee
Q 001358          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1092)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  689 (1092)
                      +................+++  +++++++++ .++.+.+|++.....+.....                           
T Consensus        88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~---------------------------  138 (361)
T 3scy_A           88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD---------------------------  138 (361)
T ss_dssp             EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred             cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence            43222221111223456666  788777776 578999999864322111100                           


Q ss_pred             ecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccc
Q 001358          690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  769 (1092)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~  769 (1092)
                                                                       .+.....+.                      
T Consensus       139 -------------------------------------------------~~~~~g~~~----------------------  147 (361)
T 3scy_A          139 -------------------------------------------------VIEFKGSGP----------------------  147 (361)
T ss_dssp             -------------------------------------------------EEECCCCCS----------------------
T ss_pred             -------------------------------------------------eEEccCCCC----------------------
Confidence                                                             000000000                      


Q ss_pred             cCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCcee------------
Q 001358          770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------  835 (1092)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~------------  835 (1092)
                                      .          +...+...+.+++|+|||+++++++  ++.+.+|++.....            
T Consensus       148 ----------------~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~  201 (361)
T 3scy_A          148 ----------------D----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT  201 (361)
T ss_dssp             ----------------C----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred             ----------------C----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence                            0          0001233466788888888666655  47788887764331            


Q ss_pred             -eEEecCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcee--eEee---ccccCCeEEEEEcCCCCEEEEEeCC-
Q 001358          836 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD-  907 (1092)
Q Consensus       836 -~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~l~s~s~D-  907 (1092)
                       ......+......++|+| |+++|++++ .++.|.+|++.+++.  +..+   ..+...+..++|+|||++|+++..+ 
T Consensus       202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence             112223455678999999 888887777 689999999987754  2222   3344567899999999998766654 


Q ss_pred             -CcEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEc--CCceeeeeeccCCCcC
Q 001358          908 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVP  980 (1092)
Q Consensus       908 -g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~--~~~~~~~~~~~~h~~~  980 (1092)
                       +.|.+|+++  +++......+..  +     ..+..++|+|||++|+++  .++.|.+|++  .+++........+...
T Consensus       281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~  353 (361)
T 3scy_A          281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK  353 (361)
T ss_dssp             SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred             CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence             889999996  344322222222  1     247799999999998885  4678999655  4676654422334567


Q ss_pred             EEEEEEe
Q 001358          981 ISQATFS  987 (1092)
Q Consensus       981 v~~l~fs  987 (1092)
                      +.|+.|.
T Consensus       354 p~~v~~~  360 (361)
T 3scy_A          354 PVCLKFV  360 (361)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEc
Confidence            8999886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=2.5e-19  Score=204.29  Aligned_cols=272  Identities=13%  Similarity=0.105  Sum_probs=188.5

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce----------eeEE-----ecCCCCCeEEEEEcCCCCCEEE----EE
Q 001358          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG  862 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg  862 (1092)
                      ...+..+++++++.++++++.+.+++|+.....          .+..     ...+...|.+++|+| ++++||    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence            345788999999999999986559998864211          0111     112456799999999 899999    78


Q ss_pred             eCCCeEEEEEcCCc--------e---eeEeeccccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC
Q 001358          863 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD  930 (1092)
Q Consensus       863 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~  930 (1092)
                      +.|+.|+|||+.++        +   .+..+.+|.+.|.+++|+|+ +++|++++.||+|++||+.++..     .....
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence            89999999999765        2   24566789999999999998 89999999999999999998632     11122


Q ss_pred             CCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeecc------CCCcCEEEEEEecCCCEEEE-EeCCCc-
Q 001358          931 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFT-SFVDGT- 1001 (1092)
Q Consensus       931 ~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t-~s~Dg~- 1001 (1092)
                      ++..   .|.+++|+|+|++|++ +.|+.|++||.+ ++....+..      .|...|.+++|++++.++++ ++.||. 
T Consensus       190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            2332   6999999999999999 578999999998 444433211      23448999999999988765 334433 


Q ss_pred             -----EEEEECCCCce-----EEeeccccccCCCCccCcccceEEEECCCCCCEEEEEe-CCCcEEEEecCCCCCccccC
Q 001358         1002 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus      1002 -----i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~-~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
                           +++|++.....     ...+....+....   .....+.+.+-++ .+++++++ ..+.|.+......++.|...
T Consensus       266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~  341 (434)
T 2oit_A          266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW  341 (434)
T ss_dssp             SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred             CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence                 89999986532     1111111110011   1111122444353 45555444 45679999988777779888


Q ss_pred             CCCCcccCCCCCCcccc
Q 001358         1071 PPDEIVGDQPTSTSEGD 1087 (1092)
Q Consensus      1071 ~~~~~~~~~~~~~~~~~ 1087 (1092)
                      ...|..+++.+.+.+++
T Consensus       342 ~~~d~~ra~lP~~~~~~  358 (434)
T 2oit_A          342 LLEDSSRAELPVTDKSD  358 (434)
T ss_dssp             EECGGGCCBCCBCTTSC
T ss_pred             eccccccccccCCCCCC
Confidence            78787777777665543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=3.7e-18  Score=190.38  Aligned_cols=283  Identities=11%  Similarity=0.060  Sum_probs=194.6

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eC
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS  416 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~  416 (1092)
                      +.++++++++ ++++++.+++|.+||+.+++.+.....                  +....+..++|+|||++++++ ..
T Consensus         3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B            3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred             ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence            3567888887 788989999999999999877654211                  122257889999999976554 56


Q ss_pred             CCEEEEEEccCCCCccceEEec-cc-----ccceeEEEeeCCCCcEEEEEEeCC------------CcEEEEECCCCce-
Q 001358          417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR-  477 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~-~h-----~~~v~~~~~s~d~~~l~l~s~~~d------------~~i~vwd~~~~~~-  477 (1092)
                      ++.|.+||+.+++...   .+. .+     ...+.+++|+|||+  .+++++.+            +.|.+||+.+++. 
T Consensus        64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            8899999999886544   222 22     23478999999999  56666654            8999999998543 


Q ss_pred             --eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC------------------------c
Q 001358          478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G  531 (1092)
Q Consensus       478 --~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~  531 (1092)
                        +..+. +...+.+++|++  +++ +++++  +.|.+||..+++....+.....                        .
T Consensus       139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence              34444 334577788854  666 55544  3499999988876665543320                        2


Q ss_pred             eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 001358          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      ...+++++++........   ....+..+|..+++.... +...   ...+..++|+| ++++++++  ++.|.+||+.+
T Consensus       213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ  284 (349)
T ss_dssp             EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred             eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence            344666665532211110   011233366666553221 1122   35788999999 99999888  88999999999


Q ss_pred             CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358          610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ++.+..+....   .+..++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus       285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            99888887543   36789999999999988889999999999887776654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=7.2e-18  Score=207.68  Aligned_cols=379  Identities=12%  Similarity=0.034  Sum_probs=241.3

Q ss_pred             eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCce--EEEEEcCCCCEEEEEeCC---------C
Q 001358          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H  600 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~s~d---------g  600 (1092)
                      ..++.|+|||+++++.      ++.|++||..+++....+.++......+  ..+.|+|||++|+.++.+         +
T Consensus        19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            4578999999988875      4469999999999888888776322223  448899999999998876         5


Q ss_pred             eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc-cccccceeeeecCCcccc
Q 001358          601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT  679 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~  679 (1092)
                      .+.+||+.+++... +..  +...+..++|||||+.||.+. ++.|++|+..++...+... ++...             
T Consensus        93 ~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~-------------  155 (740)
T 4a5s_A           93 SYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI-------------  155 (740)
T ss_dssp             EEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred             EEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence            67799999987643 322  223578999999999999885 5899999998765432211 00000             


Q ss_pred             cccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-Cee
Q 001358          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH  758 (1092)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i  758 (1092)
                                           +..+..   --+|+-+                -......+.|||||+.|+.+..| +.+
T Consensus       156 ---------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v  195 (740)
T 4a5s_A          156 ---------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV  195 (740)
T ss_dssp             ---------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred             ---------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence                                 000000   0000000                01223457899999999988766 447


Q ss_pred             EEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC---ce-
Q 001358          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK-  834 (1092)
Q Consensus       759 ~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~---~~-  834 (1092)
                      .+|.+.....                 ..            .+...+..+.+.+.|..-   ...+|++||+.+   ++ 
T Consensus       196 ~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~  243 (740)
T 4a5s_A          196 PLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN  243 (740)
T ss_dssp             CEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred             ceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence            8877643210                 00            133445666776666421   123689999998   73 


Q ss_pred             -eeEEec------CCCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCce----ee--Eee--ccccCCeE-----
Q 001358          835 -TILTIM------PPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----  890 (1092)
Q Consensus       835 -~~~~~~------~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~V~-----  890 (1092)
                       ....+.      ++...+..++|+| |+++++....    +..|++||+.+++    +.  ..+  .+|...|.     
T Consensus       244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~  322 (740)
T 4a5s_A          244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS  322 (740)
T ss_dssp             CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred             ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence             233343      3677899999999 8886665543    3379999999987    32  222  44665554     


Q ss_pred             EEEEcCCCCEEE-EEeC-C--CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----C--c
Q 001358          891 GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H  958 (1092)
Q Consensus       891 ~l~~spdg~~l~-s~s~-D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~--~  958 (1092)
                      .++|||||+.|+ ..+. +  ..|.+||+.+++..     +...+..    .+..+. ++|++.|+. +..     +  .
T Consensus       323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~  392 (740)
T 4a5s_A          323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN  392 (740)
T ss_dssp             CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred             CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence            789999999887 6654 3  45888898875522     2223322    244443 355777766 433     2  3


Q ss_pred             EEEEEcCCceeeeeec---cCCCcCEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceEEee
Q 001358          959 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       959 v~lwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~t~s~D---g~i~vwd~~~~~~~~~~ 1016 (1092)
                      |+..++..+.....+.   .+....+..+.|||||++++.....   ..+.+++..+++....+
T Consensus       393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence            5555555444322222   1234678899999999987755443   36888898888765444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=1.4e-18  Score=198.19  Aligned_cols=221  Identities=12%  Similarity=0.038  Sum_probs=160.4

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE-
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-  412 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la-  412 (1092)
                      ...+..+++++++. ++++|+.++ ++||+...-......   -.+.. ....+.......|...|.+++|+|||++|| 
T Consensus        36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKP---GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCT---TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhccc---ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            34789999999998 677887777 899886421110000   00000 000000001224677899999999999999 


Q ss_pred             ---EEeCCCEEEEEEccCC--------CCccceEEecccccceeEEEeeCC-CCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                         +|+.|+.|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.||+|++||++++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7788999999999865        222334456789999999999998 56  899999999999999999988777


Q ss_pred             EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------CCceEEEEEecCCCEEEEEecCC--
Q 001358          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK--  551 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~~--  551 (1092)
                      ..+|...|.+++|++  +|.+|++|+.||+|++||.+ ......+..+       ...+.+++|++++.++++.....  
T Consensus       188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence            788999999999965  67899999999999999998 4444444332       23789999999998887654321  


Q ss_pred             -CCceeEEEEeCCCC
Q 001358          552 -EGESFLVEWNESEG  565 (1092)
Q Consensus       552 -~~~~~i~iwd~~~~  565 (1092)
                       +....+++|++...
T Consensus       265 ~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          265 LETSPDVVMALLPKK  279 (434)
T ss_dssp             SSSCCEEEEEECCCT
T ss_pred             cCCCCceEEEEeccC
Confidence             11234889998754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.2e-18  Score=209.01  Aligned_cols=236  Identities=16%  Similarity=0.168  Sum_probs=175.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeC---CCcEEEE
Q 001358          396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW  470 (1092)
Q Consensus       396 ~~~V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~---d~~i~vw  470 (1092)
                      ..+|.+++|||||++||+++. ||++.||++.+++..    .+..|. ..+..++|+|| +  ++++++.   +....+|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence            457999999999999999887 999999999776432    344555 68999999999 5  6776664   4555665


Q ss_pred             ECCC---CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       471 d~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      .+..   +... .+..+. .+...+|++++++..+++++.++.. +||+.+++.......+.   .+++|+|||++|+++
T Consensus        94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~  167 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred             EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence            5432   3322 333222 3445677777665566666555554 99998876554443332   788999999999988


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCCCCC
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      +.+..+...|++||+.+++.. .+..+.   ..+..++|+|||+.|+++..++  .|++||+.+++.. .+..+  ...+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~  240 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF  240 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred             EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence            765444477999999988865 555555   7789999999999999888888  8999999998877 44433  2335


Q ss_pred             ceEE--------EccCCCEEEEEeCCCeEEEEEC
Q 001358          626 PRIC--------FNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       626 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ..++        |+|||.++++++.++.+++|++
T Consensus       241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            5666        9999999999999999999998

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=4.6e-18  Score=192.76  Aligned_cols=256  Identities=11%  Similarity=0.027  Sum_probs=178.5

Q ss_pred             ecCCCCcEEE-----EEECCCCCEEEEEeC-CC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC
Q 001358          392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1092)
Q Consensus       392 l~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~  463 (1092)
                      ++.|...+..     .+|||||++||+++. ++  .|.+||+.+++...   ...++...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            6667766666     899999999999987 66  48888998876443   2345555566788999999  7888888


Q ss_pred             CCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001358          464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA  521 (1092)
Q Consensus       464 d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~  521 (1092)
                      ++.|++||+.+++....+..+...+....+..++++.+++...                      .++.|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            8999999999998877777777666655555567888877432                      346799999988754


Q ss_pred             eEEecCCCCceEEEEEec-CCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC
Q 001358          522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       522 ~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~  598 (1092)
                      .. +..+...+..++|+| ||+.|+.+.....  ....|+++|..++..........  ...+....|+|||+.|+..+.
T Consensus       181 ~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          181 TV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred             EE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence            43 334455788999999 9999988775321  14468899987665443332221  124778899999998866442


Q ss_pred             -C----CeEEEEECCCCceEEEEeCCCC--C-CCCceEEEccCCCEEEEE---------eCCCeEEEEECCCCC
Q 001358          599 -D----HVIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESN  655 (1092)
Q Consensus       599 -d----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~  655 (1092)
                       +    +.|++||+.+++..........  . ......+|+|||+.|+..         ..+..|++|++.+++
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence             2    2399999999875443322210  0 012334799999988864         445689999988764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=2e-17  Score=184.36  Aligned_cols=297  Identities=9%  Similarity=0.015  Sum_probs=197.9

Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      ..++.++++++.++.|.+||+.+++....+..+. ..+..++|+|+|++++++..   .++.|++||+.+++.+..+...
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence            4567889999999999999999887766665443 25678999999998776552   3567999999999988777642


Q ss_pred             ccc---CCceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCce---EEEEeCCCCCCCCceEEEccCCCE
Q 001358          575 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL  636 (1092)
Q Consensus       575 ~~~---~~~v~~~~~~~~~~~l~~~s~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~  636 (1092)
                      ...   ...+..++|+|+++++++++.+            +.|.+||+.+++.   +.....+   ..+.+++|+|+|+ 
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-  160 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-
T ss_pred             cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-
Confidence            200   1236788999999999998865            8999999988543   3344433   2478899999999 


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      +++++  +.|.+||..+++....+........  .+.                     .+           ..+.+|...
T Consensus       161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~--~~~---------------------~~-----------~~~~~~~~~  204 (349)
T 1jmx_B          161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK--GYS---------------------AP-----------DVLYFWPHQ  204 (349)
T ss_dssp             EEEES--SSEEEECTTTCCEEEEECSTTCCCT--TBC---------------------CC-----------BCCCCCCCC
T ss_pred             EEEcc--CcEEEEeCCCCceeccccccccCCc--ccc---------------------Cc-----------cceeeecCC
Confidence            55554  3499999988876654432110000  000                     00           112222211


Q ss_pred             eccCccceecccCCccccccEEEEEEecCCcEEE-----------EeecCCeeEEeeecCCccccCcccccccCCccccC
Q 001358          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-----------ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-----------~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1092)
                      ...            ........+++++++....           ....++.+.+|++.                     
T Consensus       205 ~~~------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  251 (349)
T 1jmx_B          205 SPR------------HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA---------------------  251 (349)
T ss_dssp             CTT------------CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred             Ccc------------eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence            000            0001223455555442211           11222333333321                     


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEec-CCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001358          786 RHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD  864 (1092)
Q Consensus       786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~-dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~  864 (1092)
                                    .+...+..++++| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.
T Consensus       252 --------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~  314 (349)
T 1jmx_B          252 --------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGT  314 (349)
T ss_dssp             --------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESB
T ss_pred             --------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecC
Confidence                          1345678999999 99999988 88999999999998887763 34577999999 8888888888


Q ss_pred             CCeEEEEEcCCceeeEeeccc
Q 001358          865 DSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       865 dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      ++.|.+||..+++.+..+..+
T Consensus       315 ~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          315 FNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             SSEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEeccccceeeeeecC
Confidence            999999999999988877644

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=3.8e-17  Score=182.98  Aligned_cols=249  Identities=9%  Similarity=0.104  Sum_probs=169.2

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcC-CceeeEEecC-CCCCeEEEEEcCCCCCE--EEEEe-------------CC
Q 001358          803 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD  865 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~~--lasg~-------------~d  865 (1092)
                      ..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| ++++  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence            45778999999999988875599999997 7776543321 112356789999 8884  55553             68


Q ss_pred             CeEEEEEcC-CceeeEeec----cccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcC-CCceeeeeeeecCCCCcCCCCC
Q 001358          866 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS  938 (1092)
Q Consensus       866 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  938 (1092)
                      |.+.+|++. +++....+.    .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... +   ...
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~  194 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH  194 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence            999999997 466544443    25567999999999998887764 6789999998 66543222222111 0   125


Q ss_pred             ceEEEEecCCCEEEEEe--CCcEEEEEcC--Cceeee---ee--cc----CCCc------CEEEEE-EecCCCEEEEEeC
Q 001358          939 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV  998 (1092)
Q Consensus       939 v~~l~~s~dg~~la~~~--d~~v~lwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~s~  998 (1092)
                      +..++|+|||++|+++.  ++.|.+|++.  +++...   .+  ..    +|..      .+..++ |||||++|++++.
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            78999999999998853  5789999875  455421   11  11    1222      588999 9999999887764


Q ss_pred             CC------cEEEEECC-CCceEEeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001358          999 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1063 (1092)
Q Consensus       999 Dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~d-g~v~~w~~~~~ 1063 (1092)
                      +.      +|.+|++. +|++..........     ..  .+..++++|.  |+++|++++.+ +.|.+|++...
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-----~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-----TS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEEEEECS-----SC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCeEEEEEECCCCCEEEeeeeeecC-----CC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            32      89999996 66654321100000     11  1224667884  47888888765 89999998643

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.78  E-value=1.6e-16  Score=176.72  Aligned_cols=296  Identities=11%  Similarity=0.112  Sum_probs=201.3

Q ss_pred             CCCceEEEEE-----cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe---
Q 001358          344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---  415 (1092)
Q Consensus       344 pdg~~llasg-----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~---  415 (1092)
                      +++++++++.     ..|+.|.+||..+++.+..                   +..+..+  .++|||||++|++++   
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~   71 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH   71 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence            3566555543     2478999999999987653                   2234344  899999999999986   


Q ss_pred             -------CCCEEEEEEccCCCCccceEEecc---cccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCceeEE-Ee
Q 001358          416 -------SKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE  482 (1092)
Q Consensus       416 -------~d~~i~iwd~~~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~-~~  482 (1092)
                             .++.|.+||..+++.+..+.....   +......++|+|||+  +|+++.  .+++|.+||+.+++.+.. +.
T Consensus        72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence                   256799999998876654322211   224567899999999  455554  368999999999988877 54


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-------EecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      . ... ..+.+.+.+ ...+++.+.||.+.+|++.......       .+.....+ ..+.+++++..++..+.    ++
T Consensus       150 ~-~~~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~  221 (361)
T 2oiz_A          150 A-AGC-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG  221 (361)
T ss_dssp             G-TTE-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred             C-CCc-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence            2 221 223344432 3678889999999999987633322       11222222 23445788877776654    45


Q ss_pred             eEEEEeCCCCeEE--EEEeecc---cc----CCceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceEEE
Q 001358          556 FLVEWNESEGAIK--RTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       556 ~i~iwd~~~~~~~--~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~s~-----------dg~i~iwd~~~~~~~~~  615 (1092)
                      .++++|...+...  ..+....   ..    ......++|+|+++.++++..           .+.|.+||+.+++.+..
T Consensus       222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~  301 (361)
T 2oiz_A          222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR  301 (361)
T ss_dssp             EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred             eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence            6999998755422  2221100   00    011123689999988887643           35899999999999999


Q ss_pred             EeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC--CeeeecccccccceeeeecCC
Q 001358          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      +..+.    +..++|+|||++|+++.. +.|.+||..++  +.+..+......-..++++|+
T Consensus       302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence            98764    789999999999998887 99999999999  888776555555566666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=4.4e-17  Score=185.22  Aligned_cols=299  Identities=11%  Similarity=-0.002  Sum_probs=194.1

Q ss_pred             CcceeEecccCCCC-----ceEEeecCCCceEEEEEcCc--CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC
Q 001358          323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP  395 (1092)
Q Consensus       323 p~~~~~~l~~h~~~-----V~~v~~spdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h  395 (1092)
                      ....+..|..+...     +..++|||||++++.+...+  ..|.+||+.+++...                    +..+
T Consensus        19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~   78 (396)
T 3c5m_A           19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEG   78 (396)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCS
T ss_pred             CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecC
Confidence            34445566655433     88999999999655555443  368888998876543                    2223


Q ss_pred             CCc-EEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeE-------------------EEeeCCCCc
Q 001358          396 GVS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQ  455 (1092)
Q Consensus       396 ~~~-V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------~~~s~d~~~  455 (1092)
                      ... ...++|||||++|++++.++.|++||+.+++...   ....+......                   ++|+|+++.
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~  155 (396)
T 3c5m_A           79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW  155 (396)
T ss_dssp             SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence            333 3347899999999999999999999999876432   22223322222                   356788873


Q ss_pred             EEEEEE-----eCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEE
Q 001358          456 ISVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVD  524 (1092)
Q Consensus       456 l~l~s~-----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~  524 (1092)
                        ++.+     ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+........
T Consensus       156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (396)
T 3c5m_A          156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI  231 (396)
T ss_dssp             --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred             --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence              3332     45678999999998765544 46677888888552 45666655543      3588888876544333


Q ss_pred             ecCC-CCceEEEEEecCCCEEEEEecCC-CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC-CCCEEEEEe----
Q 001358          525 YDAP-GLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----  597 (1092)
Q Consensus       525 ~~~~-~~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~s----  597 (1092)
                      .... ...+..++|+|||++|+..+... .....|++||+.+++....... .    ... +.|+| +++.+++++    
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC-
T ss_pred             eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcc
Confidence            3321 33578899999999888775432 1224599999998876543322 2    123 88999 999888754    


Q ss_pred             ------------CCCeEEEEECCCCceEEEEeCCCCC--------CCCceEEEccCCCEEEEEeC-CCeEEEE--ECCCC
Q 001358          598 ------------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES  654 (1092)
Q Consensus       598 ------------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--~~~~~  654 (1092)
                                  .++.|++||+.+++...........        ..+..++|+|+|+.|+.++. ++...+|  ++.++
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence                        3478999999888754333222110        02466899999999887775 4544454  44444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=1.3e-16  Score=178.57  Aligned_cols=250  Identities=9%  Similarity=0.057  Sum_probs=172.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEEcc-CCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-----------
Q 001358          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----------  462 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-----------  462 (1092)
                      +...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            34568889999999999999888 89999997 665332 1111111 235678999999853344553           


Q ss_pred             --CCCcEEEEECC-CCceeEEEe----cCCcceEEEeecccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCC
Q 001358          463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG  529 (1092)
Q Consensus       463 --~d~~i~vwd~~-~~~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~~--~~~  529 (1092)
                        .++++.+|++. +|+....+.    .+...+.+++|+  +||+++++++ .++.|++|+++ +++...  .+.  .+.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence              68999999997 466654443    245678888885  4777777765 46899999998 554322  232  235


Q ss_pred             CceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeEEE---EEeeccc----cCC------ceEEEE-EcCCCCEE
Q 001358          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI  593 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~~~~~~~l  593 (1092)
                      ..+..++|+|||++++++..   .++.|.+|+..  +++...   .+.....    +..      .+..++ |+|+|+++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            67899999999999988763   24568887654  566432   2222110    011      478899 99999998


Q ss_pred             EEEeCC-C-----eEEEEECC-CCceEEE---EeCCCCCCCCceEEEcc---CCCEEEEEeCC-CeEEEEECCCC
Q 001358          594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES  654 (1092)
Q Consensus       594 ~~~s~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~  654 (1092)
                      +++..+ +     .|.+|++. +++....   ...+  ......++|+|   +|++|+++..+ +.|.+|+....
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            876543 2     89999996 6665432   2222  22467899999   89999999864 89999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=4.7e-16  Score=172.85  Aligned_cols=313  Identities=10%  Similarity=0.099  Sum_probs=209.6

Q ss_pred             CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001358          498 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG  565 (1092)
Q Consensus       498 ~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~------~~~~~~~i~iwd~~~~  565 (1092)
                      ++++++...      .|+.|.+||..+++....+.....+  .++|+|||++++++..      .++.++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            445555543      3779999999888877666655444  8999999999998863      1223677999999999


Q ss_pred             eEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceEEE-EeCCCCCCCCceEEEccCC-CEEE
Q 001358          566 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA  638 (1092)
Q Consensus       566 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~  638 (1092)
                      +.+..+.....   +......++++|+|++++++..  +++|.+||+.+++.+.. +...+    ...+.+.|++ ..++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence            99888765320   1134667899999999999864  68999999999988877 65432    2235677765 6778


Q ss_pred             EEeCCCeEEEEECCC-CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceee
Q 001358          639 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1092)
                      +.+.||.+.+|+... ++......                                               ...+|+...
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~  200 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD  200 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred             EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence            888999999998764 32221100                                               001111100


Q ss_pred             ccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC
Q 001358          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1092)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  797 (1092)
                                       .. ..+.+++++..++..+.++.+.++++.......         +..|........   ...
T Consensus       201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~  250 (361)
T 2oiz_A          201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN  250 (361)
T ss_dssp             -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred             -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence                             00 011224455555555566777777654321100         000110000000   000


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEe------------CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001358          798 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1092)
Q Consensus       798 ~~~~~~~v~~~~~s~dg~~l~~~s------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1092)
                        -.......++|+||++.+.++.            .+.|.+||+.+++.+.++..+.  +.+++|+| |+++|++++. 
T Consensus       251 --~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-  324 (361)
T 2oiz_A          251 --WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-  324 (361)
T ss_dssp             --CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred             --cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence              0011122378999988777653            2479999999999999998776  99999999 8889998887 


Q ss_pred             CeEEEEEcCCc--eeeEeeccccCCeEEEEEcCCCC
Q 001358          866 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN  899 (1092)
Q Consensus       866 g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~  899 (1092)
                      +.|.+||..++  +.+..+..+......++++|||+
T Consensus       325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999999  99999877888889999999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.9e-14  Score=167.75  Aligned_cols=329  Identities=11%  Similarity=0.108  Sum_probs=223.5

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECC--CCceEEEEeCCCCCCCCceEEEc
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      ++.|.++|..+++.+..+...    ..+..+.|+||++++++++.++.|.+||+.  +++.+..+....   ....++|+
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s  248 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETS  248 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEc
Confidence            678999999999999888753    356789999999999999999999999996  888888877543   25789999


Q ss_pred             ----cCCCEEEEEeC-CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecc
Q 001358          632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1092)
Q Consensus       632 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1092)
                          |||++++++.. ++.+.++|..+.+.+..+......+....+.                                 
T Consensus       249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~---------------------------------  295 (567)
T 1qks_A          249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH---------------------------------  295 (567)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---------------------------------
T ss_pred             cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---------------------------------
Confidence                69998888765 5999999988877665443110000000000                                 


Q ss_pred             ccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEe-ecCCeeEEeeecCCccccCcccccccCCccccC
Q 001358          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1092)
                                                ....+..+.+++++..++.. ...|.+.++++.....                 
T Consensus       296 --------------------------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------------  332 (567)
T 1qks_A          296 --------------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------------  332 (567)
T ss_dssp             --------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------------
T ss_pred             --------------------------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------------
Confidence                                      11245667777776554444 4458888777543210                 


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCE
Q 001358          786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNV  858 (1092)
Q Consensus       786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~  858 (1092)
                           +....+   ........+.|+|+|++++++.  ++.|.++|+.+++.+..+..     |.+.-..+ ++|+.+.+
T Consensus       333 -----~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v  403 (567)
T 1qks_A          333 -----LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV  403 (567)
T ss_dssp             -----EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred             -----ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence                 111111   1233456789999999998886  58899999999998776643     33222222 67833555


Q ss_pred             EEEEe-CCCeEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCce---
Q 001358          859 IAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI---  920 (1092)
Q Consensus       859 lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-------Dg~i~iwd~~~~~~---  920 (1092)
                      .+++. .++.|.++|..+       .+.+.++......-..+..+||+++|.....       ..+|.++|+.+.+.   
T Consensus       404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~  483 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS  483 (567)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred             EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence            55554 468999999988       5677887765444345778999999887663       35899999987511   


Q ss_pred             -eeeeeeecC--CCCcCCCCCceEEEEecCCCEEEEE-e-----CCcEEEEEcCCceeeeeec
Q 001358          921 -QTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF  974 (1092)
Q Consensus       921 -~~~~~~~~~--~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~v~lwd~~~~~~~~~~~  974 (1092)
                       .....+...  .+.......+..+.|+|||+.+.++ .     ++.|.|+|..+++.+..+.
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence             111223210  0000011358899999999988774 2     6889999999999877643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=8.7e-14  Score=162.13  Aligned_cols=246  Identities=11%  Similarity=0.018  Sum_probs=161.4

Q ss_pred             CCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEE
Q 001358          344 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY  423 (1092)
Q Consensus       344 pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iw  423 (1092)
                      |.+ +++++...+++|.++|..+++.+....                    ....+..++|||||+++++++.++.|.+|
T Consensus       165 ~~~-~~~V~~~~~~~V~viD~~t~~v~~~i~--------------------~g~~p~~v~~SpDGr~lyv~~~dg~V~vi  223 (567)
T 1qks_A          165 LEN-LFSVTLRDAGQIALIDGSTYEIKTVLD--------------------TGYAVHISRLSASGRYLFVIGRDGKVNMI  223 (567)
T ss_dssp             GGG-EEEEEETTTTEEEEEETTTCCEEEEEE--------------------CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCc-eEEEEeCCCCeEEEEECCCCeEEEEEe--------------------CCCCccceEECCCCCEEEEEcCCCeEEEE
Confidence            444 478888889999999999998876421                    23467799999999999999999999999


Q ss_pred             Ecc--CCCCccceEEecccccceeEEEee----CCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC
Q 001358          424 AYH--GGSDARQQLEIDAHVGNVNDLAFS----APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  497 (1092)
Q Consensus       424 d~~--~~~~~~~~~~l~~h~~~v~~~~~s----~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~  497 (1092)
                      |+.  +++.+.   ++.... ....++|+    |||++ ++++...+++|.|+|..+.+.+..+......+....++   
T Consensus       224 D~~~~t~~~v~---~i~~G~-~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~---  295 (567)
T 1qks_A          224 DLWMKEPTTVA---EIKIGS-EARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH---  295 (567)
T ss_dssp             ETTSSSCCEEE---EEECCS-EEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---
T ss_pred             ECCCCCCcEeE---EEecCC-CCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---
Confidence            996  665443   343322 35789999    69995 45556677999999999998887765221100000000   


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001358          498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  577 (1092)
Q Consensus       498 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  577 (1092)
                                                    ....+..+..++++..++....   ..+.|.++|..+.+......-..  
T Consensus       296 ------------------------------p~~rva~i~~s~~~~~~vv~~~---~~g~v~~vd~~~~~~~~v~~i~~--  340 (567)
T 1qks_A          296 ------------------------------PEPRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--  340 (567)
T ss_dssp             ------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--
T ss_pred             ------------------------------CCCceEEEEEcCCCCEEEEEec---CCCeEEEEecCCCccceeeeeec--
Confidence                                          0113344555666555444331   24567777776543222211111  


Q ss_pred             CCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeC-CCCCCCCceEE-EccCCCEEEEEe--CCCeEEEEECC
Q 001358          578 HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC-FNKNGTLLAVIA--NENRIKILETP  652 (1092)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~-~s~~~~~l~~~~--~dg~i~iw~~~  652 (1092)
                      ......+.|+|++++++++. .++.|.++|..+++.+..+.. ......-.... ++|++..+.+.+  .++.|.+++..
T Consensus       341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence            24567789999999988765 678999999999998888875 32111112333 578755554433  35789998876


Q ss_pred             C
Q 001358          653 E  653 (1092)
Q Consensus       653 ~  653 (1092)
                      +
T Consensus       421 ~  421 (567)
T 1qks_A          421 P  421 (567)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=1.1e-15  Score=186.56  Aligned_cols=295  Identities=10%  Similarity=0.002  Sum_probs=196.5

Q ss_pred             EecccCCCCceEEeecCCCceEEEEE--cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEE-----
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-----  400 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg--~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~-----  400 (1092)
                      ..+.+|...|..++|++++- +++++  +.++...||....+.....                   +..|...+.     
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~   76 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE   76 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred             HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence            45678999999999999875 56666  5578899999654443332                   455655555     


Q ss_pred             ----EEEEC--CCCCE-EEEEeC-CCEEEEEEcc--C-CCCccceEEecc-----cccceeEEEeeCCCCcEEEEEEeCC
Q 001358          401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD  464 (1092)
Q Consensus       401 ----~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~~~~s~d~~~l~l~s~~~d  464 (1092)
                          ..+|+  |||++ ||.++. +..|.+|++.  + ++ ..   .+..     |...+.+++|||||+  .|++++.|
T Consensus        77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~  150 (662)
T 3azo_A           77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE  150 (662)
T ss_dssp             TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred             cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence                56565  99999 887654 4566777765  3 43 22   3444     677899999999999  67766665


Q ss_pred             ----------CcEEEEECCC------CceeEEEe-cCCcceEEEeecccCCccEEEEEecC--------CeEEEEEcC-C
Q 001358          465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S  518 (1092)
Q Consensus       465 ----------~~i~vwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~-~  518 (1092)
                                ..|++||+.+      ++ ...+. .+...+..++|  ++||++|+.++.+        ..|.+||++ +
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence                      5899999988      54 44555 55666777777  5588899887755        379999998 4


Q ss_pred             C---CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCC-----ceEEEEEcCCC
Q 001358          519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK  590 (1092)
Q Consensus       519 ~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~  590 (1092)
                      +   ........+...+..++|+|||+.++++..  ++...|++||..+++.......+.....     .+..++|+|++
T Consensus       228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence            5   233333344678899999999995555433  3344789999888876554443321000     14678899999


Q ss_pred             CEEEEEeCCCeEEEE--ECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCC--eEEEEECCCCCeee
Q 001358          591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSVD  658 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~~  658 (1092)
                      ..+++++. +.+++|  |..+++ +..+..+.  ..+..+ +++++..  ++.++.+.  .|.+++..+++...
T Consensus       306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART  374 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence            99999988 999999  655555 55555442  234444 1444443  33444454  45556666665443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=2.5e-15  Score=167.13  Aligned_cols=262  Identities=10%  Similarity=0.112  Sum_probs=178.0

Q ss_pred             CceEEeecCCCceEEEEE--------cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      .+..+++  ||++++.+.        ..++.|.+||+.+++...                    +    ..+..++||||
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD   69 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD   69 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence            5677788  898654442        125679999998876432                    2    46788999999


Q ss_pred             CCEEEEEeCC---C--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-------------------
Q 001358          408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-------------------  463 (1092)
Q Consensus       408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-------------------  463 (1092)
                      |++||.++.+   +  .|.+||+.+++...    +..+.. +..++|+|||+.  |+.++.                   
T Consensus        70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~  142 (347)
T 2gop_A           70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD  142 (347)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred             CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence            9999988653   3  47888888765332    223334 999999999994  555442                   


Q ss_pred             --------CCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCC-------eEEEEEcCCCCceEEecCC
Q 001358          464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP  528 (1092)
Q Consensus       464 --------d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~  528 (1092)
                              ...|.+||+.+++.+..+.. . .+..++|+  +|| +++++..++       ...+|.++ ......+..+
T Consensus       143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~  216 (347)
T 2gop_A          143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK  216 (347)
T ss_dssp             -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred             CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence                    25799999999887555654 3 67778885  577 777776542       44555555 3333333333


Q ss_pred             CCceEEEEEecCCCEEEEEecCCC----CceeEEEEeCCCCeEEEEEeeccccCCceEE-EEEcCCCCEEEEEeCCCeEE
Q 001358          529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~s~dg~i~  603 (1092)
                       ..+..+  +|||++|+.++....    ....|++||  +++......++.   ..+.. +.|+ ++ .+++++.++.++
T Consensus       217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~  286 (347)
T 2gop_A          217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN  286 (347)
T ss_dssp             -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred             -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence             444444  999999988775321    245789999  666544444433   56775 8999 88 888899999999


Q ss_pred             EEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeE-EEEECC
Q 001358          604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP  652 (1092)
Q Consensus       604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~  652 (1092)
                      +| +.+++....+..   ...+..++|+|  .++++++.++.. .+|.+.
T Consensus       287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            99 876665444432   23578899999  677777776654 677665

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.70  E-value=7.5e-16  Score=175.00  Aligned_cols=244  Identities=9%  Similarity=-0.010  Sum_probs=166.6

Q ss_pred             EEEEEECCCCCEEEEEeCC---CEEEEEEccCCCCccceEEecccccc-eeEEEeeCCCCcEEEEEEeCCCcEEEEECCC
Q 001358          399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~  474 (1092)
                      +.+++|||||++||.....   ..|.+||+.+++...    +..+... ...+.|+|||+  .|+.++.++.|++||+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence            6778999999999887543   478899998875332    3333333 33478999999  788888888999999999


Q ss_pred             CceeEEEecCCcceEE---Eee--------------cccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCce
Q 001358          475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC  532 (1092)
Q Consensus       475 ~~~~~~~~~~~~~v~~---i~~--------------~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i  532 (1092)
                      ++.......+......   +++              ..+++++.++..     ..+..|.+||+.+++..... .+...+
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~  190 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL  190 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence            8876666545443322   111              123344444433     35668999999887654443 345578


Q ss_pred             EEEEEec-CCCEEEEEecCCCC--ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEE
Q 001358          533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI  604 (1092)
Q Consensus       533 ~~~~~s~-dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~i  604 (1092)
                      ..+.|+| +++.|+.++.....  ...|++||..+++.........  ...+..+.|+|++++|+.++.+     +.|++
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            8999999 88888777642110  1569999987765433333111  1357889999999988776543     45999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEEe----------------CCCeEEEEECCCCCe
Q 001358          605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS  656 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~  656 (1092)
                      ||+.+++.........    .. ++|+| +|+++++++                .++.|++|+..+++.
T Consensus       269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            9999887655443321    23 89999 999888765                347899999987653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=2.7e-14  Score=153.75  Aligned_cols=242  Identities=10%  Similarity=0.092  Sum_probs=174.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecC------CCCCeEEEEEc-CCCCCEEEEEeC-CCeEEEE
Q 001358          801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY  871 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~iw  871 (1092)
                      +-..+.+++++++|+++++.. ++.|.+||.. ++.+..+..      +...+..++++ + +++++++... ++.|++|
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence            456688999999999888765 6899999987 666666542      33578899994 5 7766666643 8899999


Q ss_pred             EcCCceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358          872 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       872 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      | .+++.+..+. .+...+.+++++|+|+++++...++.|.+||..... ..  .+... +..   ..+..++++++|++
T Consensus       106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~--~~~~~-~~~---~~p~~i~~~~~g~l  177 (286)
T 1q7f_A          106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEI  177 (286)
T ss_dssp             C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred             C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence            9 5677776664 345678999999999988888888999999975422 11  12111 111   24789999999997


Q ss_pred             EEEE-eCCcEEEEEcCCceeeeeec-cCCCcCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCceEEeeccccccCCCCc
Q 001358          951 FLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1027 (1092)
Q Consensus       951 la~~-~d~~v~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1027 (1092)
                      +++. .++.|++||.. ++.+..+. .++...+..++++++|+++++...++ .|.+|+. +++.+..+...        
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~--------  247 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK--------  247 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence            7774 57899999974 55544432 22346789999999999988887776 9999995 56666555421        


Q ss_pred             cCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358         1028 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1028 ~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .....+.+++++| ++.++++ +.|++|++|++....
T Consensus       248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence            1122456788998 4665555 689999999986544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.6e-14  Score=158.84  Aligned_cols=248  Identities=11%  Similarity=0.085  Sum_probs=183.9

Q ss_pred             CCceEEeecCCCceEEEEEcCc------------------------CcEEEEecCCCCceeeeeeeeeecccccceeEEe
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA  390 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d------------------------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~  390 (1092)
                      +.|.+++++|+|+ ++++.+.+                        ++|.+||..+|+.+...                 
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----------------   85 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----------------   85 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence            4899999999998 67777766                        47999999888765420                 


Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC-CccceEEe---------cccccceeEEEeeC-CCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI  459 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~~~~s~-d~~~l~l~  459 (1092)
                       -.++-..+..++++|+|+++++...++.|++||..+.. .+.   .+         .++......++|+| ++.  +++
T Consensus        86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv  159 (329)
T 3fvz_A           86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV  159 (329)
T ss_dssp             -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred             -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence             22455689999999999988888889999999987542 222   33         24445788999999 677  677


Q ss_pred             EEe-CCCcEEEEECCCCceeEEEecCC----------cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001358          460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--  526 (1092)
Q Consensus       460 s~~-~d~~i~vwd~~~~~~~~~~~~~~----------~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--  526 (1092)
                      +.+ .++.|++|| .+|+.+..+....          .....+++.+. .+.++++...++.|++|+.++++....+.  
T Consensus       160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            776 689999999 6788777774322          33778888543 26788888889999999998777666653  


Q ss_pred             CCCCceEEEEEecCCCEEEEEecC---CCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001358          527 APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~  603 (1092)
                      .....+..++++| +..+...+..   ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus       238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            3455788999999 4444333210   12245799999999999888753222236789999999997777788899999


Q ss_pred             EEECCC
Q 001358          604 IWDMNK  609 (1092)
Q Consensus       604 iwd~~~  609 (1092)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.68  E-value=2.7e-10  Score=141.38  Aligned_cols=587  Identities=9%  Similarity=0.020  Sum_probs=338.7

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|+++.-.++|...  .|+.+| +..||-   .....     +.......      -.-....|.++...++|.+.+ |
T Consensus        43 n~v~~I~qD~~G~lW--igT~~G-L~ryDG---~~f~~-----~~~~~~~~------~~l~~n~I~~i~~d~~g~lWi-g  104 (795)
T 4a2l_A           43 STVFSIDQDKRGNMW--FATYDG-VNKYDG---YAFTV-----YQHNEDDP------NSIANDISRIVKTDSQGRVWI-G  104 (795)
T ss_dssp             SCEEEEEECTTSCEE--EEETTE-EEEECS---SCEEE-----ECCCTTCT------TSCSCSCEEEEEECTTSCEEE-E
T ss_pred             ceeEEEEEcCCCCEE--EeecCc-CcccCC---CceEE-----EeCCCCCC------CcccccceeEEEECCCCCEEE-E
Confidence            489999999999644  444554 566663   22211     11000000      000246799999999987665 4


Q ss_pred             eCCCEEEEEEccCCCCccceEEeccccc----ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-Ccc-e
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V  488 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~----~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~-v  488 (1092)
                      +.+| +..||..+++..    .+.....    .|.++...++|.  +.+ ++. +.|..||..+++.......+ ... |
T Consensus       105 T~~G-l~~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i  175 (795)
T 4a2l_A          105 TRDG-LSRYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI  175 (795)
T ss_dssp             ESSC-EEEEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred             eCCc-hheeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence            4566 899998775421    2222111    288999888887  343 444 45899998776543211111 112 6


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      .++...  .++. +..++.++.+..|+..+....... ......|.++...++|...+.....     -++.||..+++.
T Consensus       176 ~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~  247 (795)
T 4a2l_A          176 ASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEI  247 (795)
T ss_dssp             EEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEE
T ss_pred             EEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeE
Confidence            666653  3444 445666556888887665543321 1234568888888888766654221     289999888765


Q ss_pred             EEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCCCCCceEEEccCCCEEE
Q 001358          568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       568 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~~~~l~  638 (1092)
                      .......    ......|.++...++|. +..|+.+ -|.+||..++.........     -....|.++...++|. +.
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW  324 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW  324 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence            4432221    11235799999988876 4455555 5899998877654432211     0123577888888876 55


Q ss_pred             EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1092)
                      +|+.++.|..|+..+.... ....          .                      +.                     
T Consensus       325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~---------------------  350 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY---------------------  350 (795)
T ss_dssp             EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred             EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence            6777777877775433111 0000          0                      00                     


Q ss_pred             cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  798 (1092)
                                +.......|.++...++|. +..++.++-+..|+......            ..+....+. .. ..+  
T Consensus       351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~l--  403 (795)
T 4a2l_A          351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RGI--  403 (795)
T ss_dssp             ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------CC--
T ss_pred             ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cCC--
Confidence                      0001234578888888887 44455555566665332111            001000000 00 000  


Q ss_pred             CCCCCCeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEEec----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001358          799 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1092)
                        ....|.+++..++|+ +.+...++.+..+|..+++......    .+...|.++...+ ++.+.+ |+.+ -+.+||.
T Consensus       404 --~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~  478 (795)
T 4a2l_A          404 --GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP  478 (795)
T ss_dssp             --SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred             --CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence              245789999999998 5554445789999998776443321    1345789999988 676555 4554 5888998


Q ss_pred             CCceeeEeec------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358          874 RSSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       874 ~~~~~~~~l~------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      .+++......      -+...|.++...++|++.+... . -|..||..+++. .  ..............|.++...++
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~  553 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASN  553 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTT
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCC
Confidence            8775433221      1236799999999988777554 4 488999887543 1  11000100111236889999999


Q ss_pred             CCEEEEEeCCcEEEEEcCCceeeeeec-cC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC
Q 001358          948 QTRFLLVHETHLAIYEAEELTCLKQWF-PI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus       948 g~~la~~~d~~v~lwd~~~~~~~~~~~-~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
                      |.+.+++.. .+..||..+++...-.. .+ ....|.++...++|.+.+++ . +-|..|+..++... .+....-++..
T Consensus       554 g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~~  629 (795)
T 4a2l_A          554 GIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQSN  629 (795)
T ss_dssp             SCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSCS
T ss_pred             CCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCccc
Confidence            997776554 78899987765433111 11 14568899999999877755 3 45788998877543 34322222222


Q ss_pred             CccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                          .+...++..++ + ..|..|+.+|- ..++..
T Consensus       630 ----~f~~~~~~~~~-~-G~l~~g~~~Gl-~~~~p~  658 (795)
T 4a2l_A          630 ----QFNTASYCRTS-V-GQMYFGGINGI-TTFRPE  658 (795)
T ss_dssp             ----CEEEEEEEECT-T-SCEEEEETTEE-EEECGG
T ss_pred             ----cCccCceeECC-C-CeEEEecCCce-EEEcHH
Confidence                22223555665 3 45777777774 455543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.4e-14  Score=159.32  Aligned_cols=248  Identities=12%  Similarity=0.095  Sum_probs=181.6

Q ss_pred             CCCeeEEEEecCCCEEEEEeCC-------------------------eEEEEEcCCceeeEEec-CCCCCeEEEEEcCCC
Q 001358          802 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD  855 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d  855 (1092)
                      -..+.+++++|+|+++++...+                         .|.+||..+++.+..+. .+......++++| +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            4568999999999999887643                         69999999898877665 3446789999999 8


Q ss_pred             CCEEEEEeCCCeEEEEEcCCce-eeEee---------ccccCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcCCCceeee
Q 001358          856 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC  923 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~l~s~s-~Dg~i~iwd~~~~~~~~~  923 (1092)
                      ++++++...++.|++|+..... .+..+         .++......++++| ++.++++.+ .++.|++|+.+. +....
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence            8888888889999999986542 45555         34556789999999 888888886 689999999543 32221


Q ss_pred             eeeecC-----CCCcCCCCCceEEEEecC-CCEEEE-EeCCcEEEEEcCCceeeeeec-cCCCcCEEEEEEec------C
Q 001358          924 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D  989 (1092)
Q Consensus       924 ~~~~~~-----~~~~~~~~~v~~l~~s~d-g~~la~-~~d~~v~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~------d  989 (1092)
                      ......     .+..   .....++++|+ |.++++ ..++.|++||..+++.+..+. ..+...+..++|+|      +
T Consensus       181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            110000     0111   24789999999 555555 367789999999888877653 34567889999999      3


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358          990 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus       990 g~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                      |+..++...+.+|++|++.+|+.+..+....       ...-.+..++++| ++.++++...++.|++|++..
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence            3333333345589999999999887764211       1112456789999 468888888999999999854

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=1.4e-14  Score=176.79  Aligned_cols=249  Identities=11%  Similarity=0.002  Sum_probs=171.4

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEE--eCCCEEEEEEccCCCCccceEEeccccccee---------EEEee--CCCCcEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV  458 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~~~~s--~d~~~l~l  458 (1092)
                      +.+|...|..++|++++.++++.  +.++...||....+...+   .+..|...+.         ...|+  |||+.+ |
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l   94 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L   94 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence            66789999999999887777777  557889999975443322   4566666666         66666  999941 4


Q ss_pred             EEEe-CCCcEEEEECC--CCceeEEEec-----CCcceEEEeecccCCccEEEEEecC----------CeEEEEEcCCC-
Q 001358          459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL-  519 (1092)
Q Consensus       459 ~s~~-~d~~i~vwd~~--~~~~~~~~~~-----~~~~v~~i~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~-  519 (1092)
                      +.++ .+..|.+|++.  ++.....+..     |...+.+++|+  +||+.|++++.+          ..|.+||+.+. 
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            4443 35667777765  2034455555     56677888885  577899988877          57999999872 


Q ss_pred             ----CceEEec-CCCCceEEEEEecCCCEEEEEecCCC----CceeEEEEeCC-CC---eEEEEEeeccccCCceEEEEE
Q 001358          520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF  586 (1092)
Q Consensus       520 ----~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~  586 (1092)
                          .....+. .+...+..++|||||++|+.++.+..    ....|++||+. ++   +......++.   ..+..+.|
T Consensus       173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~  249 (662)
T 3azo_A          173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW  249 (662)
T ss_dssp             TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred             cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence                2334444 44567788999999999998875432    13579999998 57   4444444444   67899999


Q ss_pred             cCCCCEEEEEeCCC--eEEEEECCCCceEEEEeCCCCC------CCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358          587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       587 ~~~~~~l~~~s~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +|||+.+++++.++  .|++||..+++.......+...      ..+..++|+|+++++++++. +.++||.
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            99999777787788  6777777677655443322111      01456777777777777777 7777773

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.65  E-value=4.2e-10  Score=139.60  Aligned_cols=535  Identities=8%  Similarity=0.034  Sum_probs=319.0

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.++...++|..++  |+. +.+..||..+++...- ...               .......|.++...++|.+.+..
T Consensus        88 n~I~~i~~d~~g~lWi--gT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t  148 (795)
T 4a2l_A           88 DISRIVKTDSQGRVWI--GTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST  148 (795)
T ss_dssp             SCEEEEEECTTSCEEE--EES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred             cceeEEEECCCCCEEE--EeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence            4799999999998333  334 4589999877643221 000               00000118888888888766654


Q ss_pred             eCCCEEEEEEccCCCCccceEEeccc-ccc-eeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-ecCCcceEEE
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  491 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~i  491 (1092)
                       ..| +..||..+++....   ..++ ... |.++...+++.   +..++.++-|..||..+++..... ......|.++
T Consensus       149 -~~g-l~~~~~~~~~~~~~---~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i  220 (795)
T 4a2l_A          149 -PEG-LIMFDIKESKFIDD---SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI  220 (795)
T ss_dssp             -TTE-EEEEETTTTEEECS---SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred             -CCc-eEEEECCCCEEEec---cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence             444 89999876532110   0011 123 88888888886   444665556899998877654321 1234567777


Q ss_pred             eecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ...  .++. +..++.++-+..||..+.........       ....|.++...++|...+... .     -|.+||..+
T Consensus       221 ~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~  291 (795)
T 4a2l_A          221 LQQ--SPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT  291 (795)
T ss_dssp             EEE--ETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred             EEc--CCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence            653  3444 55555554588888766543322211       235689999998888666542 1     289999888


Q ss_pred             CeEEEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC--C--CCCCCceEEEccCCCE
Q 001358          565 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL  636 (1092)
Q Consensus       565 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~  636 (1092)
                      +.........    ......|.++...++|. +..|+.++-|..|+..++.........  .  ....|.+++..++|. 
T Consensus       292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-  369 (795)
T 4a2l_A          292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-  369 (795)
T ss_dssp             TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred             CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence            7654432211    12246799999998875 666777788999987665543222111  0  123477888888776 


Q ss_pred             EEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      |.+|+.++.|..|+..++..........                                 ..                 
T Consensus       370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~---------------------------------~~-----------------  399 (795)
T 4a2l_A          370 LWIGTNDGGLNLYNPITQRFTSYTLQED---------------------------------ES-----------------  399 (795)
T ss_dssp             EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred             EEEEECCCCeEEEcCCCCcEEEEecCCC---------------------------------Cc-----------------
Confidence            5567777788888876543211100000                                 00                 


Q ss_pred             eccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecC
Q 001358          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1092)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  796 (1092)
                             . .    ......|.++...++|+.|..++.++-+..|+......            ..+.....        
T Consensus       400 -------~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~--------  447 (795)
T 4a2l_A          400 -------A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS--------  447 (795)
T ss_dssp             --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred             -------c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence                   0 0    00234577888888888455555555566666432211            11110000        


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001358          797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1092)
Q Consensus       797 ~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1092)
                        ......|.++...++|.+.+... +.+.+||..+++.......      ....|.++...+ ++.+.+ |+. +-+..
T Consensus       448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~  521 (795)
T 4a2l_A          448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV  521 (795)
T ss_dssp             --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred             --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence              01345789999999998777665 5688999887655432211      235789999988 676555 444 45888


Q ss_pred             EEcCCceeeEeec-------cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358          871 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       871 wd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                      |+..+++.  .+.       .+...|.++...++|++.++.. .| |..||..+++...   .....+..  ...|.++.
T Consensus       522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~  592 (795)
T 4a2l_A          522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLP--NNVVYGIL  592 (795)
T ss_dssp             EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCS--CSCEEEEE
T ss_pred             EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCc--hhheEEEE
Confidence            99887765  222       2456799999999998766543 44 8889987754322   22222221  13588899


Q ss_pred             EecCCCEEEEEeCCcEEEEEcCCceeeeeeccCC---CcCE--EEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       944 ~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      ..++|.+.+++ ++.|..|+..+++... +....   ...+  .++...+||++++ |+.+| +..++..
T Consensus       593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~  658 (795)
T 4a2l_A          593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE  658 (795)
T ss_dssp             ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred             ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence            99999877766 5668888987665432 21111   1222  4677788897666 66676 4455543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=1.7e-13  Score=147.47  Aligned_cols=248  Identities=14%  Similarity=0.157  Sum_probs=177.7

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE-CCCCC
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS  409 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~  409 (1092)
                      .+|-..+.+++++|+|+ ++++...++.|.+||.. ++.+.....             .....+|...+..+++ .++|+
T Consensus        26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~   90 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD   90 (286)
T ss_dssp             TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred             CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence            35556899999999998 78888888999999987 554432110             0001234567899999 57777


Q ss_pred             EEEEEeC-CCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe--cCC
Q 001358          410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG  485 (1092)
Q Consensus       410 ~las~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~  485 (1092)
                      ++++... ++.|.+|| .+++.+.   .+. .+...+.+++++++|+  ++++...++.|.+||. .++.+..+.  ++.
T Consensus        91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  163 (286)
T 1q7f_A           91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL  163 (286)
T ss_dssp             EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred             EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence            7776643 78899999 4454333   332 3445789999999998  7788778899999995 566666664  344


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CCceEEEEEecCCCEEEEEecCCCCce-eEEEEeC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE  562 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~~-~i~iwd~  562 (1092)
                      ..+..+++.+  ++.++++...++.|++||... .....+...  ...+..++++++|+.+++...    ++ .|.+||.
T Consensus       164 ~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~  236 (286)
T 1q7f_A          164 EFPNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ  236 (286)
T ss_dssp             SSEEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred             CCcEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence            5678888854  667888888899999999743 444444433  256889999999987777643    33 7999995


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                       +++.+..+..+. ....+..++++|+++.+++ +.++.|++|+....
T Consensus       237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence             566777776643 1234789999999976555 67999999997653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=1.1e-13  Score=152.75  Aligned_cols=274  Identities=10%  Similarity=0.024  Sum_probs=188.6

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.+++|+|++. .++..+.++.++.|.   ++....                   +.++...+.+++|+|+|++++++
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~   62 (333)
T 2dg1_A            6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD   62 (333)
T ss_dssp             CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred             cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence            3688999999997 466667788899992   332221                   44566778999999999988888


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe--cCCcce
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV  488 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~--~~~~~v  488 (1092)
                      ..++.|.+||..+++...   ....+...+.+++|+++|+  ++++...+    +.|.+||.++++....+.  .+...+
T Consensus        63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            888999999998875332   1224567899999999998  66766655    689999988877654443  234568


Q ss_pred             EEEeecccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      ..+++.+  ++.++++...      .+.|..++....+... +......+..++|+|+|+.++.+..   .++.|++||.
T Consensus       138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL  211 (333)
T ss_dssp             EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred             cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence            8888854  6667776553      2455555544433322 2222235788999999997766542   1457999998


Q ss_pred             CC-CeEEEEEe-----eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCC----CCCCceEEEcc
Q 001358          563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK  632 (1092)
Q Consensus       563 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~  632 (1092)
                      .+ +.....+.     ... ....+..++++++++..++...++.|.+||. +++.+..+..+..    ...+.+++|+|
T Consensus       212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence            63 33322211     111 0136788999999988787778899999998 5677777654421    11478999999


Q ss_pred             CCCEEEEEeCCC
Q 001358          633 NGTLLAVIANEN  644 (1092)
Q Consensus       633 ~~~~l~~~~~dg  644 (1092)
                      +++.|++++.++
T Consensus       290 dg~~L~v~~~~g  301 (333)
T 2dg1_A          290 GTNQLIICSNDI  301 (333)
T ss_dssp             TSCEEEEEEECG
T ss_pred             CCCEEEEEeCcc
Confidence            987777766653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=1.4e-13  Score=168.76  Aligned_cols=250  Identities=10%  Similarity=-0.009  Sum_probs=176.0

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  466 (1092)
                      +|...+..++|||||++||.++.++     .|++||+.+++....  .+  ....+..++|+|||+  .|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence            4556789999999999999876543     899999999875442  12  222367899999999  5776666655  


Q ss_pred             --------------EEEEECCCCcee--EEEec--CCcceEEEeecccCCccEEEEEec-----CCeEEEEEcCC-----
Q 001358          467 --------------IKVWDAVTGSRT--YSFEG--HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS-----  518 (1092)
Q Consensus       467 --------------i~vwd~~~~~~~--~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~~-----  518 (1092)
                                    |++|++.+++..  ..+..  |...+..+.|  ++||++|+.++.     +..|.+||+.+     
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence                          999999887632  22232  4455667777  557788887765     56899999976     


Q ss_pred             -CC-ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEE
Q 001358          519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL  594 (1092)
Q Consensus       519 -~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~  594 (1092)
                       +. ....+..+...+.. .|+++|+.|+..+........|++||+.++..  ...+..+. ....+..+.|++++..++
T Consensus       274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred             CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence             32 34444444444444 58899999888775443467899999988742  34444443 013677889987777778


Q ss_pred             EEeCCCe--EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCC
Q 001358          595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1092)
Q Consensus       595 ~~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  655 (1092)
                      +...++.  |++|++.+|+.+..+..+  ...+..++++|++..++....    .++++.||+.+++
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            8888875  566787778877777765  334677889999887665433    4789999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.61  E-value=1.9e-13  Score=147.96  Aligned_cols=249  Identities=12%  Similarity=0.047  Sum_probs=177.5

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+..+..+.....+++|+|+|+.+++++..++.|..||..++  ...                   +..+...+.++++
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~   76 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL   76 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence            3345556666688999999999877889999999999999887  322                   3346678999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEeccc-ccceeEEEeeCCCCcEEEEEE----e-------------CCCc
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITC----G-------------DDKT  466 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s~----~-------------~d~~  466 (1092)
                      +|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+  ++++.    +             ..+.
T Consensus        77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence            999998888777789999999887643211111111 23567899999998  67763    2             1345


Q ss_pred             EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-CCCc---eEEecCCCCceEEEEEecCCC
Q 001358          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~i~~~~~s~dg~  542 (1092)
                      |..++.. ++ +..+..+......++|+  ++++.+++.+.++.|.+|++. .+..   ...+......+..++++++|+
T Consensus       155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            6666654 44 44455566677888884  466777778888999999997 3332   223333444567899999998


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-cCCCCEEEEEeCCCeEEEEECCCCce
Q 001358          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                      ..++.      .+.|.+||.. ++.+..+..+.   . +.+++| .|+++.|++++.+ .+..++..+..+
T Consensus       231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            76665      2359999986 77777777666   4 888999 5898999998876 455566666544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=3.9e-09  Score=130.62  Aligned_cols=588  Identities=12%  Similarity=0.105  Sum_probs=335.7

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.++.-.++|...+  |+.+| +..||-.+   ...     +........  .  ..-....|.++...++|..|-+|
T Consensus        19 n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~~-----~~~~~~~~~--~--~~l~~n~I~~i~~d~~g~~lWig   83 (781)
T 3v9f_A           19 NYVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FIT-----YYKEEQSSS--V--QSITGNELNEVYTDPVQPVIWIA   83 (781)
T ss_dssp             SBEEEEEECTTSCEEE--EESSC-EEEECSSS---EEE-----ECCCSSCSS--S--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred             CEeEEEEECCCCCEEE--ccCCc-CccccCCc---eEE-----EEcCCCCCc--c--ccccccccceEEEcCCCCEEEEE
Confidence            4899999999996444  44544 66676332   211     110000000  0  00023569999999988845567


Q ss_pred             eCCCEEEEEEccCCCCccceEEec-----c---cccceeEEEeeC--CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-  483 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~-----~---h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-  483 (1092)
                      +.++-+..||..+++..    .+.     .   ....|.++....  ++.   +..++.++.|..+|..+++.. .+.. 
T Consensus        84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~-~~~~~  155 (781)
T 3v9f_A           84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFT-HYNKS  155 (781)
T ss_dssp             ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEE-EESTT
T ss_pred             eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEE-eeccC
Confidence            77734999998875421    121     0   123588888877  665   444554556889998776543 2321 


Q ss_pred             -----CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------CCCCceEEEEEecCCCEEEEEecCC
Q 001358          484 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       484 -----~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                           ....|.++...  .++ .|..++.++-+..||..+........       .....|.++...++|...+...   
T Consensus       156 ~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~---  229 (781)
T 3v9f_A          156 TVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS---  229 (781)
T ss_dssp             TCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred             cccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence                 12346666553  344 45556666567888876654322111       1234688898888888766542   


Q ss_pred             CCceeEEEEeCCCCeEEEEEeec----cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe-------CC-
Q 001358          552 EGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-  619 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-------~~-  619 (1092)
                        . -+.+||..+++........    ......|.++...+++. +..|+..+-|.++|..++.......       .. 
T Consensus       230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~  305 (781)
T 3v9f_A          230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD  305 (781)
T ss_dssp             --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred             --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence              2 3899998877654332211    11235789998887764 6667765678899988765432221       10 


Q ss_pred             ----CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCC
Q 001358          620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1092)
Q Consensus       620 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1092)
                          -....|.++...++|. |.+|+.++-|..++........ ...          .+                     
T Consensus       306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~---------------------  352 (781)
T 3v9f_A          306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP---------------------  352 (781)
T ss_dssp             STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----------------------------------
T ss_pred             CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc---------------------
Confidence                1123477788888776 5567766778777765432111 100          00                     


Q ss_pred             CCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc
Q 001358          696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  775 (1092)
Q Consensus       696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~  775 (1092)
                       ..                            ..+.......|.++...++|.. ..++.++-+..|+......       
T Consensus       353 -~~----------------------------~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~-------  395 (781)
T 3v9f_A          353 -TQ----------------------------MNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVA-------  395 (781)
T ss_dssp             --C----------------------------CCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEE-------
T ss_pred             -cc----------------------------cccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeE-------
Confidence             00                            0000002345778888888874 4455444566665322110       


Q ss_pred             cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec--CCCCCeEEEEEcC
Q 001358          776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNP  853 (1092)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~  853 (1092)
                           ..+....           ......|.+++..++|.+.+...++.+..++..+++......  .....|.+++..+
T Consensus       396 -----~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~  459 (781)
T 3v9f_A          396 -----IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK  459 (781)
T ss_dssp             -----ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred             -----EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence                 0000000           014467889999888887775546778899987765433221  2346789999887


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeeEeeccc-----cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeec
Q 001358          854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT  928 (1092)
Q Consensus       854 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~  928 (1092)
                       ++.+ ..|+. +-+..||..+++........     ...|.++...++|.+.+.....| |..||..+++...   +..
T Consensus       460 -~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~  532 (781)
T 3v9f_A          460 -NKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQ  532 (781)
T ss_dssp             -TSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECT
T ss_pred             -CCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccC
Confidence             6654 44665 55889998876543322212     46799999999988766443345 7888887654222   222


Q ss_pred             CCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC---CCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001358          929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~s~Dg~i~vw 1005 (1092)
                      ..+.  ....|.++...++|.+.+++.+|-+..||..+++... +...   ....|.++...++|.+.++ +..| |..+
T Consensus       533 ~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~  607 (781)
T 3v9f_A          533 YEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCY  607 (781)
T ss_dssp             TTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEE
T ss_pred             CCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEE
Confidence            2221  1246889999999998777664444888887665332 1111   1346788999999987665 4555 7778


Q ss_pred             ECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1006 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1006 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      +..++... .+....-++..    ....-++..++ + ..|..|+.+| +..++..
T Consensus       608 ~~~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~-G~l~~g~~~G-l~~f~p~  655 (781)
T 3v9f_A          608 ITSKKCFY-TYDHSNNIPQG----SFISGCVTKDH-N-GLIYFGSING-LCFFNPD  655 (781)
T ss_dssp             ETTTTEEE-EECGGGTCCSS----CEEEEEEEECT-T-SCEEEEETTE-EEEECSC
T ss_pred             ECCCCceE-EecccCCcccc----ccccCceEECC-C-CEEEEECCCc-eEEEChh
Confidence            88766543 33322222221    22223455665 3 4577788887 4556653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.60  E-value=1.4e-13  Score=168.73  Aligned_cols=250  Identities=10%  Similarity=-0.009  Sum_probs=172.5

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +|+..+..++|||||++++.+.+.+|    +|++||+.+|+.+.. .                 +  +...+..++||||
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD  181 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD  181 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence            45557889999999995444433333    899999999986642 0                 1  1123667999999


Q ss_pred             CCEEEEEeCCCE----------------EEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeC-----CC
Q 001358          408 GSLLGVAYSKHI----------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK  465 (1092)
Q Consensus       408 g~~las~~~d~~----------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~  465 (1092)
                      |+.|+.++.++.                |++|++.++.... .......|...+..++|||||++  |+.++.     +.
T Consensus       182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~  259 (710)
T 2xdw_A          182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN  259 (710)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred             CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence            999999987765                9999998875321 11122235566889999999995  444432     57


Q ss_pred             cEEEEECCC------Cc-eeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCCc--eEEecCCC--C
Q 001358          466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L  530 (1092)
Q Consensus       466 ~i~vwd~~~------~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~--~  530 (1092)
                      .|.+||+.+      +. ....+..+...+... |++  +|..|+..+..    +.|.+||+.+...  ...+..+.  .
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  336 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence            899999987      53 466676676666543 433  55555555443    3699999987652  23333333  3


Q ss_pred             ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEE
Q 001358          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD  606 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd  606 (1092)
                      .+..++|++++..+++...  ++...|++|++.+|+.++.+..+.   +.+..+.++|+++.++...    ..++++.||
T Consensus       337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            6788899877766666654  335678999987888777777654   7788899999987776432    457899999


Q ss_pred             CCCCc
Q 001358          607 MNKVQ  611 (1092)
Q Consensus       607 ~~~~~  611 (1092)
                      +.+++
T Consensus       412 ~~tg~  416 (710)
T 2xdw_A          412 LTKEE  416 (710)
T ss_dssp             TTSSS
T ss_pred             CCCCc
Confidence            99877

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=3.9e-13  Score=149.35  Aligned_cols=285  Identities=11%  Similarity=0.040  Sum_probs=175.6

Q ss_pred             ceEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC---Ce--
Q 001358          580 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---NR--  645 (1092)
Q Consensus       580 ~v~~~~~~~~~~~l~~~s---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g~--  645 (1092)
                      .+....+  +|++++...         .++.|++||+.+++....       ..+..++|+|||++|+.++.+   +.  
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            4556666  777776542         257799999998875433       236889999999999987754   33  


Q ss_pred             EEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcccee
Q 001358          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1092)
                      |.+|++.+++......                                                                
T Consensus        87 l~~~~~~~g~~~~l~~----------------------------------------------------------------  102 (347)
T 2gop_A           87 IWVADLETLSSKKILE----------------------------------------------------------------  102 (347)
T ss_dssp             EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred             EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence            6666666543221110                                                                


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001358          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v  805 (1092)
                             ... +..++|+|||+.|+.++.+..       ..                     .            ....+
T Consensus       103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------~------------~~~~~  134 (347)
T 2gop_A          103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------E------------DFIFE  134 (347)
T ss_dssp             -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred             -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------C------------CcEEE
Confidence                   112 677889999998887765410       00                     0            00011


Q ss_pred             eEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-------eEEEEEcCCcee
Q 001358          806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV  878 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~v~iwd~~~~~~  878 (1092)
                      ..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++       ...||.+.+++.
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence            122233344332222235699999998887455544 3 788999999 78 888776542       344544445553


Q ss_pred             eEeeccccCCeEEEEEcCCCCEEEEEeCCC--------cEEEEEcCCCceeeeeeeecCCCCcCCCCCceE-EEEecCCC
Q 001358          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT  949 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~dg~  949 (1092)
                       ..+..+ ..+..+  ||||++|+.++.++        .|.+||  +++.     .....++.   ..+.. ++|+ || 
T Consensus       211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~---~~~~~~~~~s-dg-  274 (347)
T 2gop_A          211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVD---RGVGQAKIKD-GK-  274 (347)
T ss_dssp             -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCC---SEEEEEEEET-TE-
T ss_pred             -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCC---cccCCccEEc-Cc-
Confidence             444445 556554  99999998887553        577777  4331     22222222   24665 8999 88 


Q ss_pred             EEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcE-EEEECCCCc
Q 001358          950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1011 (1092)
Q Consensus       950 ~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i-~vwd~~~~~ 1011 (1092)
                      ++++ ..++.++|| +.+++... +. .+...|.+++|+|  .++++++.++.. .+|.++ ++
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~~~~-~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGEIKP-IA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSSEEE-EE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             EEEEEecCCcEEEE-EcCCceEE-Ee-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            6666 577889999 87665433 23 3477899999999  688888877765 888887 54

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.58  E-value=1.1e-12  Score=139.16  Aligned_cols=245  Identities=12%  Similarity=0.104  Sum_probs=179.7

Q ss_pred             EEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001358          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       349 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~  427 (1092)
                      +|++++.++.|.+||.++|+.+..                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            789999999999999999998765                   33344 4788999999999998  35677999999 7


Q ss_pred             CCCccceEEeccc-ccceeEEEeeCCCCcEEEEEEeC-CCcEEEEECCCCceeEEEecC------CcceEEEeecccCCc
Q 001358          428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI  499 (1092)
Q Consensus       428 ~~~~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~  499 (1092)
                      |+.+.   .+..+ ...+.++.+.+||+  ++++.+. ++.|..+|. +|+.+..+...      ......+++  .++|
T Consensus        65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G  136 (276)
T 3no2_A           65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG  136 (276)
T ss_dssp             SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred             CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence            76554   34443 34688999999999  7777776 778888884 78888777521      122333333  5678


Q ss_pred             cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc--
Q 001358          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--  577 (1092)
Q Consensus       500 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--  577 (1092)
                      .++++...++.|..||.+ ++.+..+.... ...++.+.++|+.++++..    .+.|..+|..+|+.+..+......  
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~  210 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV  210 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence            899999999999999988 78777776643 4556778899999988764    457999999999999988754311  


Q ss_pred             -CCceEEEEEcCCCCEEEEEeCC--------CeEEEEEC-CCCceEEEEeCCCCCCCCceEE
Q 001358          578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       578 -~~~v~~~~~~~~~~~l~~~s~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                       -..+..+...++++.+++.+..        +..+++.+ .+|+.+..+........+..++
T Consensus       211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence             1237888889999888776421        23345555 4677777776665555555544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.58  E-value=3.6e-13  Score=147.57  Aligned_cols=278  Identities=10%  Similarity=-0.013  Sum_probs=191.0

Q ss_pred             CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccce
Q 001358          355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       355 ~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~  434 (1092)
                      .+++|.+||.++++........    .   .      -.........+++. +++..++...++.|.+||..+++.+.  
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~----~---n------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~--   78 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYR----A---N------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG--   78 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHH----H---H------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred             CCceEEEEECCCCEEhhhhHhh----h---c------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence            3789999999998765421000    0   0      00122446777774 45555556667899999999987655  


Q ss_pred             EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC-----cceEEEeecccCCccEEEEEe-cC
Q 001358          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD  508 (1092)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~~l~s~~-~d  508 (1092)
                       ++. .......++++++++  ++++...++.|.+||..+++....+....     .....+++  . ++.++++.. .+
T Consensus        79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~  151 (328)
T 3dsm_A           79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ  151 (328)
T ss_dssp             -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred             -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence             333 335688999999985  66666578999999999999887776433     13455666  2 344444444 48


Q ss_pred             CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC------ceeEEEEeCCCCeEEEEEeeccccCCceE
Q 001358          509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS  582 (1092)
Q Consensus       509 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~  582 (1092)
                      +.|.++|..+.+....+... .....++++|+|++++++......      .+.|+++|..+++....+....  .....
T Consensus       152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~  228 (328)
T 3dsm_A          152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS  228 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred             CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence            99999999988776665543 244678999999977766432100      2679999999999887775432  23688


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc-CCCEEEEE----eCCCeEEEEECCCCCee
Q 001358          583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV  657 (1092)
Q Consensus       583 ~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~  657 (1092)
                      .++++|+++.++++..  .|.+||..+++................++++| ++.++++.    ..++.|.+|+.. ++.+
T Consensus       229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            9999999999988765  89999999887632111111123467899999 55555555    568999999998 7777


Q ss_pred             eecc
Q 001358          658 DAAG  661 (1092)
Q Consensus       658 ~~~~  661 (1092)
                      ..+.
T Consensus       306 ~~i~  309 (328)
T 3dsm_A          306 DEFY  309 (328)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.57  E-value=2e-13  Score=166.68  Aligned_cols=248  Identities=11%  Similarity=-0.007  Sum_probs=166.1

Q ss_pred             CCCCcEEEEEECCCCCEEEEE-----eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358          394 DPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  466 (1092)
                      +|...+..++|||||++||.+     +.+.+|++||+.+|+.+... .+...  ....++|+|||+  .|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCCC
Confidence            566789999999999999954     34468999999998755110 11111  126899999999  6777777765  


Q ss_pred             -----------EEEEECCCCc----eeEEEecCCcceEEEeecccCCccEEEEEecCC----eEEEEEcCCCCceEEecC
Q 001358          467 -----------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYDA  527 (1092)
Q Consensus       467 -----------i~vwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~  527 (1092)
                                 |++|++.++.    .+.....|...+..+.+  ++||++|+.++.++    .|.+|+...+. ...+..
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~  269 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVK  269 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEE
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeec
Confidence                       9999999886    33333345566777777  55778887777665    56666554443 333333


Q ss_pred             CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~i  604 (1092)
                      +...+....+ ++|. ++..+.....+..|++||+.++..   ...+..+.  ...+..++++ ++..+++...|+..++
T Consensus       270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence            4444555555 6777 665554333467899999988753   33333321  2457888888 6677788889998888


Q ss_pred             EECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCC
Q 001358          605 WDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1092)
Q Consensus       605 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  655 (1092)
                      |.+. ++.....+..+. ...+..++++|+++.++....    .++|++||+.+++
T Consensus       345 ~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          345 RVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8654 455556555432 234667788999987775443    4789999998775

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=3.2e-12  Score=141.00  Aligned_cols=246  Identities=8%  Similarity=-0.029  Sum_probs=168.9

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ......+.++...+.+++|+|+|+ +++++..++.|.+||..+++....                   ...+...+.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~   93 (333)
T 2dg1_A           34 AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIK   93 (333)
T ss_dssp             CEEEEEEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEE
T ss_pred             cceeEEEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEE
Confidence            345566777777889999999998 788888889999999998875432                   223567899999


Q ss_pred             ECCCCCEEEEEeCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC------CCcEEEEECC
Q 001358          404 WSPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAV  473 (1092)
Q Consensus       404 ~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~  473 (1092)
                      |+|+|+++++...+    +.|.+||..++...... .-..+...+.+++++|+|+  ++++...      .+.|..+|..
T Consensus        94 ~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~  170 (333)
T 2dg1_A           94 IHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD  170 (333)
T ss_dssp             ECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT
T ss_pred             ECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCC
Confidence            99999988887666    68999999887543211 1012445789999999998  5665543      3556667766


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcCCC-CceEE------ecCC-CCceEEEEEecCCCEE
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSL-GARVD------YDAP-GLGCTRMAYSANGRRL  544 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~-~~~~~------~~~~-~~~i~~~~~s~dg~~l  544 (1092)
                      +++... +..+...+..++++  +++..+ ++.+.++.|.+|+++.. .....      .... ...+..++++++|+..
T Consensus       171 ~~~~~~-~~~~~~~~~~i~~~--~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~  247 (333)
T 2dg1_A          171 FRTVTP-IIQNISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY  247 (333)
T ss_dssp             SCCEEE-EEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred             CCEEEE-eecCCCcccceEEC--CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEE
Confidence            555433 32333456778874  466644 55566889999999642 22211      1111 1367889999999977


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccc---cCCceEEEEEcCCCCEEEEEeCCC
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGDDH  600 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~s~dg  600 (1092)
                      ++...    ++.|.+||. +++.+..+.....   +...+.+++|+|+++.|++++.++
T Consensus       248 v~~~~----~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          248 VAMYG----QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEET----TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EEEcC----CCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            76643    456999998 5666666654431   011578999999988887766554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.57  E-value=1.6e-11  Score=132.98  Aligned_cols=285  Identities=11%  Similarity=0.057  Sum_probs=195.2

Q ss_pred             cccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      +..+...+.+++++|+|+ +.++...++.|.+||.. ++.... .                 +..+...+.+++++++|+
T Consensus        10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~   69 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE   69 (299)
T ss_dssp             CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred             CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence            445556899999999998 56666667899999988 543321 0                 223457899999999999


Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcce
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV  488 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v  488 (1092)
                      ++++...++.|..||.. ++ ... ..+......+.++++.++|.  ++++...++.|.+||. +++.... ...+...+
T Consensus        70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~  143 (299)
T 2z2n_A           70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP  143 (299)
T ss_dssp             EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence            88887778889999986 32 221 12223455789999999998  6777777889999998 6654432 22344567


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      ..+++.  +++.++++...++.|..||. +++.... .......+..++++++|+..++...    .+.|..||. +++.
T Consensus       144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred             ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence            788874  46677777777889999998 4443322 3334456889999999986665432    456999999 6664


Q ss_pred             EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      .. +.... ....+..++++++++..++...++.|.+||. ++. +..+........+.++++ ++|.+.++.. .+.+.
T Consensus       216 ~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~  289 (299)
T 2z2n_A          216 TE-FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG  289 (299)
T ss_dssp             EE-EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred             EE-EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence            43 32211 2357889999999886666557889999998 454 334433333345788999 8887666654 56777


Q ss_pred             EEECCCC
Q 001358          648 ILETPES  654 (1092)
Q Consensus       648 iw~~~~~  654 (1092)
                      .++..+.
T Consensus       290 ~~~~~~~  296 (299)
T 2z2n_A          290 KLTLIKD  296 (299)
T ss_dssp             EEEEC--
T ss_pred             EEEcCcc
Confidence            7776543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=4.3e-12  Score=137.81  Aligned_cols=204  Identities=13%  Similarity=0.079  Sum_probs=142.4

Q ss_pred             eeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeeE
Q 001358          805 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~  880 (1092)
                      ...++|+|||+++.++.   ++.|.++|+.+++.+.++....  . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence            44688999999888775   4789999999999999886432  1 233433 566777888899999999876 55432


Q ss_pred             eeccc----cCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEecCC
Q 001358          881 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       881 ~l~~h----~~~V~-~l~~s-pdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s~dg  948 (1092)
                      ....+    ..++. ..+|. ++|++++ .+.+|.|.+.|+.++.......+...      .+...  +....+++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~  291 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL  291 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence            22111    12222 24664 6775554 66789999999987643222222210      11111  234568889999


Q ss_pred             CEEEEEe-----------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEE-eCCCcEEEEECCCCceEEe
Q 001358          949 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1015 (1092)
Q Consensus       949 ~~la~~~-----------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~-s~Dg~i~vwd~~~~~~~~~ 1015 (1092)
                      +.+.+..           .+.|.++|+.+++.+..+..++  .+.+++||+|++ +|+++ ..++.|.++|..+++.+.+
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            9988842           1469999999999998877653  788999999997 66664 4589999999999999988


Q ss_pred             ec
Q 001358         1016 IL 1017 (1092)
Q Consensus      1016 ~~ 1017 (1092)
                      +.
T Consensus       370 i~  371 (386)
T 3sjl_D          370 VN  371 (386)
T ss_dssp             EC
T ss_pred             ec
Confidence            86

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=6.2e-13  Score=144.41  Aligned_cols=288  Identities=14%  Similarity=0.113  Sum_probs=194.3

Q ss_pred             EEeecCCCceEEEEEcC----cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          339 SMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~----d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      .....||+++++++-..    ++.|.+.|..+++.+....                   ....+ . +++||||++|+++
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P-~-va~spDG~~lyVa   95 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP-N-PVVADDGSFIAHA   95 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC-E-EEECTTSSCEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC-c-EEECCCCCEEEEE
Confidence            35667999876666554    6899999999998876421                   12223 4 9999999999887


Q ss_pred             e----------CCCEEEEEEccCCCCccceEEecc--c---ccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCce
Q 001358          415 Y----------SKHIVQLYAYHGGSDARQQLEIDA--H---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSR  477 (1092)
Q Consensus       415 ~----------~d~~i~iwd~~~~~~~~~~~~l~~--h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~  477 (1092)
                      +          .++.|.+||..+++.+..+. +..  +   ...-..++|+|||++  ++.+.  .++.|.++|+.+++.
T Consensus        96 n~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t~~v  172 (386)
T 3sjl_D           96 STVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEGKAF  172 (386)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTTTEE
T ss_pred             cccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCCCcE
Confidence            5          35789999999987665432 211  0   123557899999995  44443  378999999999999


Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCC-CCceEEec----CCCCceE-EEEEe-cCCCEEEEEecC
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYD----APGLGCT-RMAYS-ANGRRLFSCGTS  550 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~----~~~~~i~-~~~~s-~dg~~l~~~~~~  550 (1092)
                      +.++.....    ..+.|. ..+.+++.+.||.+.+.++.. ++......    ....++. ...|. ++|++++...  
T Consensus       173 v~tI~v~g~----~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--  245 (386)
T 3sjl_D          173 KRMLDVPDC----YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--  245 (386)
T ss_dssp             EEEEECCSE----EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred             EEEEECCCc----ceeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--
Confidence            998854221    111222 235677888899999999876 33322111    1112221 23554 6786665432  


Q ss_pred             CCCceeEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCc
Q 001358          551 KEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQ  611 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~  611 (1092)
                         .+.|++.|..++.  ....+.-.       .........++++++++.++....          .+.|.+.|+.+++
T Consensus       246 ---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k  322 (386)
T 3sjl_D          246 ---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE  322 (386)
T ss_dssp             ---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             ---CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence               4569999987664  33333200       000123345677999999988643          2579999999999


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCCeeeecccc
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                      .+..+....   .+..+++++|++ +|++.. .++.|.++|..+++.+..+...
T Consensus       323 v~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          323 RLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            999987653   367999999997 666654 4899999999999888877643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.4e-11  Score=136.49  Aligned_cols=203  Identities=10%  Similarity=0.011  Sum_probs=141.4

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEE-ecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 001358          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1092)
                      ..++++|||++|++++   ++.|.++| .+++.+.. +....    ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            4688999999998875   36799999 99988877 65322    24555645567777889999999999 8876633


Q ss_pred             ec-----cccCC-eEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCC----cCCCCCceEEEEecCCCEE
Q 001358          882 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       882 l~-----~h~~~-V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~~s~dg~~l  951 (1092)
                      ..     ....+ .....+++++..++..+..+.+.+.|+.+........+......    .........++++||++.+
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence            22     11122 23356777776665556788999999976542221222111100    0000124458899999988


Q ss_pred             EEEe-----------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEee
Q 001358          952 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       952 a~~~-----------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      .+..           .+.|.++|..+++.+..+..+  ....+++|+|||+ .++++. .++.|.+||+.+++.+.++
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            7742           247999999999998886543  3688999999999 777776 4899999999999999774

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.4e-11  Score=136.66  Aligned_cols=281  Identities=12%  Similarity=0.011  Sum_probs=186.6

Q ss_pred             eecCCCceEEEEEc-CcC---cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-
Q 001358          341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-  415 (1092)
Q Consensus       341 ~~spdg~~llasg~-~d~---~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-  415 (1092)
                      ...|++++++++-. ...   +|.++|..+++.+..                   +.....+  .++|||||++|+++. 
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~   85 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST   85 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence            44578875444433 223   889999999887643                   2222223  899999999999986 


Q ss_pred             ---------CCCEEEEEEccCCCCccceEEec--cc---ccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCceeE
Q 001358          416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       416 ---------~d~~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~  479 (1092)
                               .++.|.+||..+.+.+.... +.  .+   ...-..++|+|||++  |+.++  .++.|.++| .+++.+.
T Consensus        86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence                     36789999999876555332 11  00   123457899999994  55544  257899999 9999887


Q ss_pred             E-EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCc-eEEEEEecCCCEEEEEecCCC
Q 001358          480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       480 ~-~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      . +... ..   +.+.+... ..+++.+.||.+.++|. +++......     ....+ .....+.+++..++..+.   
T Consensus       162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---  232 (373)
T 2mad_H          162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---  232 (373)
T ss_pred             EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence            7 6432 21   23333332 45677888999999999 665542221     11112 233566777666554443   


Q ss_pred             CceeEEEEeCCCCe--EEEEEeecc-------ccCCceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceE
Q 001358          553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL  613 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~  613 (1092)
                       .+.+.+.|..++.  .+..+....       ........+.++|+++.++++..          .+.|.++|..+++.+
T Consensus       233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence             3468889987653  222222110       00123445789999998888653          357999999999999


Q ss_pred             EEEeCCCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCCeeee
Q 001358          614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA  659 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~  659 (1092)
                      ..+....   ....++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus       312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            9997653   368999999999 677776 489999999999988766

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=1.2e-12  Score=141.59  Aligned_cols=238  Identities=11%  Similarity=0.057  Sum_probs=168.7

Q ss_pred             ecCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      +..+.....+++|+|+|+ +++++..++.|..||..++  ..   .+..+...+.+++++++|+  ++++...++.|.+|
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ   95 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence            445666788999999998 7777888899999999886  33   4556777899999999998  67777777899999


Q ss_pred             ECCCCceeEEEecC----CcceEEEeecccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCC
Q 001358          471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       471 d~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~  529 (1092)
                      |..+++........    ...+..+++  +++|.++++.+.                 .+.|..++..  .....+....
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~  171 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR  171 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence            99888765443222    123556777  457778887321                 2344444443  4444444555


Q ss_pred             CceEEEEEecCCCEEEEEecCCCCceeEEEEeCC-CCeE---EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw  605 (1092)
                      .....++|+|||+.+++...    ++.|++|+.. +++.   ...+..   ....+..++++++|+..++.  ++.|.+|
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            56789999999999844432    5679999986 5554   333411   23567789999999865555  7899999


Q ss_pred             ECCCCceEEEEeCCCCCCCCceEEE-ccCCCEEEEEeCCCeEEEEECCCC
Q 001358          606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                      |.. ++.+..+..+..   +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus       243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred             CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence            986 777777775543   788999 5899999998876 4444555544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=1.7e-12  Score=142.20  Aligned_cols=272  Identities=8%  Similarity=0.032  Sum_probs=182.8

Q ss_pred             cccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccC
Q 001358          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1092)
                      .++++.++|..+.+....................+++. +++.+++...++.+.+||..                     
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~---------------------   72 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN---------------------   72 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT---------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc---------------------
Confidence            36778888865433221110000001122345667764 45555555667888887643                     


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE-eCCeEEEEEcCCceeeEEecCCC-----CCeEEEEEcCCCCCEE
Q 001358          786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI  859 (1092)
Q Consensus       786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~-sdg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l  859 (1092)
                       +++.+....     .......++++++++++++. .++.|.+||..+++....+....     .....+++ . +++++
T Consensus        73 -t~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly  144 (328)
T 3dsm_A           73 -TFKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY  144 (328)
T ss_dssp             -TCCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred             -ccEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence             333333321     23567899999999655555 37999999999999887765433     14556777 3 56555


Q ss_pred             EEEe-CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEcCCCceeeeeeeec
Q 001358          860 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT  928 (1092)
Q Consensus       860 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D----------g~i~iwd~~~~~~~~~~~~~~  928 (1092)
                      ++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+          +.|.++|..+++...  .+..
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence            5554 4889999999999988877643 345689999999988877654          789999998876433  2222


Q ss_pred             CCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeee-eccCCCcCEEEEEEec-CCCEEEEE----eCCCcE
Q 001358          929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1002 (1092)
Q Consensus       929 ~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~-~~~~h~~~v~~l~fs~-dg~~l~t~----s~Dg~i 1002 (1092)
                      ..+     .....++|+||++.|.++.. .|.+||..+++.... +...+......++++| +++++++.    ..+++|
T Consensus       222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            222     14789999999999988654 999999998876432 2222246789999999 55666665    568899


Q ss_pred             EEEECCCCceEEeec
Q 001358         1003 SIHEASNLEVQCRIL 1017 (1092)
Q Consensus      1003 ~vwd~~~~~~~~~~~ 1017 (1092)
                      .+||.. |+.+.++.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 99888876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=1.2e-08  Score=126.29  Aligned_cols=536  Identities=11%  Similarity=0.038  Sum_probs=309.2

Q ss_pred             CCceEEeecCCCc-eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC--CCCEE
Q 001358          335 SSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL  411 (1092)
Q Consensus       335 ~~V~~v~~spdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l  411 (1092)
                      ..|.++...++|. .++  |+.++.+..||..+++...- ..   ...      ..  ..-....|.++...+  +|.+.
T Consensus        66 n~I~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~f~~~-~~---~~~------~~--~~l~~~~i~~i~~d~~~~g~lw  131 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWI--ATQRAGLNAYNYETQSFSVY-QY---NPE------DP--QSLITNDVTHITSSVQAGKGLW  131 (781)
T ss_dssp             SCEEEEEECSSSSEEEE--EESSSCEEEEETTTTEEEEE-CC---CTT------CS--SSCSCSCEEEEEECSSTTSEEE
T ss_pred             cccceEEEcCCCCEEEE--EeCCCCcceECCCCCeEEee-cc---ccC------CC--CCcccCcceEEEecCccCCCEE
Confidence            3699999999997 443  45555799999887653221 00   000      00  000124688998887  66654


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEec------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe---
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE---  482 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~---  482 (1092)
                       .++.++-|..||..+++..    .+.      -....|.++...++|.   +..++.++-|..||..+++...-..   
T Consensus       132 -i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~  203 (781)
T 3v9f_A          132 -VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQ  203 (781)
T ss_dssp             -EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC---
T ss_pred             -EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCC
Confidence             4553334888998765321    121      1134588888888876   4446666568999988775432111   


Q ss_pred             ----cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEecCCCEEEEEecCC
Q 001358          483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       483 ----~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                          .....|.++..  +.++.+. .|+.+ -+.+||..+.......       ......|.++...++|...+....  
T Consensus       204 ~~~~l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~--  277 (781)
T 3v9f_A          204 NPNSLPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL--  277 (781)
T ss_dssp             -----CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS--
T ss_pred             CcccCCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC--
Confidence                11345777765  3455444 45555 5788887654332211       112346889988888876654321  


Q ss_pred             CCceeEEEEeCCCCeEEEEEe-----------eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe---
Q 001358          552 EGESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---  617 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~---  617 (1092)
                         +-|.++|..++.......           ........|.++...++|. +-.|+.++-|..++..++.......   
T Consensus       278 ---~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~  353 (781)
T 3v9f_A          278 ---NGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT  353 (781)
T ss_dssp             ---SCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred             ---CCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence               128889988765433221           0112246789999888775 6677777789999987655433211   


Q ss_pred             ----CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCC
Q 001358          618 ----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1092)
Q Consensus       618 ----~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1092)
                          ..-....|.+++..++|. |.+|+.++.|..|+..++... .+..                               
T Consensus       354 ~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~-------------------------------  400 (781)
T 3v9f_A          354 QMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE-------------------------------  400 (781)
T ss_dssp             CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC---------------------------------
T ss_pred             ccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC-------------------------------
Confidence                011123477788777776 556666666888876532110 0000                               


Q ss_pred             CCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcc
Q 001358          694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  773 (1092)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~  773 (1092)
                                                         +.......|.++...++|...+ ++.++-+..++....       
T Consensus       401 -----------------------------------~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-------  437 (781)
T 3v9f_A          401 -----------------------------------NRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK-------  437 (781)
T ss_dssp             --------------------------------------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-------
T ss_pred             -----------------------------------CCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-------
Confidence                                               0001234577788777887444 554444555543221       


Q ss_pred             cccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC-----CCCeEE
Q 001358          774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATS  848 (1092)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~-----~~~i~~  848 (1092)
                                     . ....... ......|.++...++|.+.+... +.+..+|..+++........     ...|.+
T Consensus       438 ---------------~-~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          438 ---------------K-FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             ---------------E-EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             ---------------c-EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence                           1 1111000 01346788999888887666554 67899998876554333222     357899


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeee
Q 001358          849 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS  925 (1092)
Q Consensus       849 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~  925 (1092)
                      ++..+ ++.+.+ |+.++-+..||..+++...-...   ....|.++...++|.+.++. .+|.|..||..+++..   .
T Consensus       500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~---~  573 (781)
T 3v9f_A          500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ---V  573 (781)
T ss_dssp             EEECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE---E
T ss_pred             EEEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE---E
Confidence            99988 676555 56544478898877653322111   24578999999998876654 4775488888775432   2


Q ss_pred             eecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeecc--C---CCcCEEEEEEecCCCEEEEEeCCC
Q 001358          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--I---SSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~--~---h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
                      .....+-.  ...|.++...++|.+.+++. +.|..++..+..... +..  +   ..-...++...+||++++ |+.+|
T Consensus       574 ~~~~~gl~--~~~i~~i~~d~~g~lW~~t~-~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G  648 (781)
T 3v9f_A          574 FQRKEGLP--NTHIRAISEDKNGNIWASTN-TGISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSING  648 (781)
T ss_dssp             ECGGGTCS--CCCCCEEEECSSSCEEEECS-SCEEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE
T ss_pred             ccccCCCC--CceEEEEEECCCCCEEEEcC-CceEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCCc
Confidence            22222221  13578899999998777654 447778877655432 111  1   111234677788898666 66777


Q ss_pred             cEEEEECC
Q 001358         1001 TLSIHEAS 1008 (1092)
Q Consensus      1001 ~i~vwd~~ 1008 (1092)
                       +..++..
T Consensus       649 -l~~f~p~  655 (781)
T 3v9f_A          649 -LCFFNPD  655 (781)
T ss_dssp             -EEEECSC
T ss_pred             -eEEEChh
Confidence             5556654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=3.4e-13  Score=164.63  Aligned_cols=250  Identities=9%  Similarity=-0.073  Sum_probs=163.9

Q ss_pred             cCCCCceEEeecCCCceEEEEE----cCcCcEEEEecCCCCce-eeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg----~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      +|+..+..++|||||++++.+.    +.+.+|++||+.+|+.+ .. .                 +.+.  ....++|||
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp  177 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP  177 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence            5666799999999999544333    33467999999999865 21 0                 1111  125789999


Q ss_pred             CCCEEEEEeCCCE-------------EEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeCCC----cEE
Q 001358          407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK  468 (1092)
Q Consensus       407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~----~i~  468 (1092)
                      ||+.|+.++.+..             |++|++.++.... .......|...+..+.|||||++  |+.++.++    .|.
T Consensus       178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY  255 (695)
T ss_dssp             TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred             CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence            9999999988765             9999999875321 22223345567899999999995  44444344    677


Q ss_pred             EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCceEEEEEecCC
Q 001358          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG  541 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~-~~~i~~~~~s~dg  541 (1092)
                      +||..+++ ...+..+...+....+   +++.+++...   .++.|.+||+.+...   ...+... ...+..++++ ++
T Consensus       256 ~~~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~  330 (695)
T 2bkl_A          256 WKRPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG  330 (695)
T ss_dssp             EECTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred             EEcCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence            77765554 4455556555555554   2444545444   257899999987653   3333333 4467888888 66


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCceE
Q 001358          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL  613 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~~  613 (1092)
                      ..+++...  ++...|++++.. ++..+.+..+.  ...+..+.++|+++.++...    ..++|++||+.+++..
T Consensus       331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~  401 (695)
T 2bkl_A          331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE  401 (695)
T ss_dssp             EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            66666554  334556666654 55555555442  25677788899988776432    3578999999988743

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.52  E-value=2.4e-12  Score=136.40  Aligned_cols=247  Identities=9%  Similarity=0.001  Sum_probs=175.8

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecccc-CCe
Q 001358          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV  889 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V  889 (1092)
                      .+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| ++++++  +.++.|+.||. +|+.+.++..+. ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            456777776 6999999999999999998766 4789999999 888888  45788999999 899999988753 578


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecC-CCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCC
Q 001358          890 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE  966 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~  966 (1092)
                      .++.+.+||+++++.+. ++.|..+|.+ ++......+... .+..   .....+++.++|+++++. .++.|..||.. 
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            89999999999999887 7777777763 443322222111 1111   135567889999999985 67899999998 


Q ss_pred             ceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001358          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
                      |+.+..+..  ...+.++.+.++|..+++++.+++|..+|..+|+.+.++..... +..   .-..+..++..+ ++..+
T Consensus       155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~  227 (276)
T 3no2_A          155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY  227 (276)
T ss_dssp             SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred             CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence            888877543  24566788899999999998888999999999999988863221 110   112344566666 46766


Q ss_pred             EEEeCC--------CcEEEEecC-CCCCccccCCCCCc
Q 001358         1047 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDEI 1075 (1092)
Q Consensus      1047 ~~~~~d--------g~v~~w~~~-~~~~~~~~~~~~~~ 1075 (1092)
                      ++.+..        +..+++++. +.+-.|+.....+.
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~  265 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF  265 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence            666421        234566663 33444655444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=9.6e-11  Score=126.70  Aligned_cols=241  Identities=10%  Similarity=0.017  Sum_probs=170.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +..+...+.+++++++|++.++...++.|.+||.. ++. ... .+..+...+.++++.++|.  ++++...++.|..||
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEY-PLPTPDAKVMCLTISSDGE--VWFTENAANKIGRIT   84 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEe-cCCcccCceeeEEECCCCC--EEEeCCCCCeEEEEC
Confidence            44566789999999999988877667899999988 542 211 2223456799999999998  677766688999999


Q ss_pred             CCCCceeEEEe--cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEe
Q 001358          472 AVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       472 ~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      .. ++. ..+.  .....+..+++.  +++.++++...++.|.+||. ++.... ........+..+++.++|+..++..
T Consensus        85 ~~-g~~-~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           85 KK-GII-KEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             TT-SCE-EEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             CC-CcE-EEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC
Confidence            76 433 3332  244567788874  46677777777889999988 333322 2333445788999999998776653


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    .+.|..||. +++.... .... ....+..+++.+++...++...++.|.+||. +++... +........+..+
T Consensus       160 ~----~~~i~~~~~-~g~~~~~-~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i  230 (299)
T 2z2n_A          160 Q----NNAIGRITE-SGDITEF-KIPT-PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAI  230 (299)
T ss_dssp             T----TTEEEEECT-TCCEEEE-ECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEE
T ss_pred             C----CCEEEEEcC-CCcEEEe-eCCC-CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeE
Confidence            2    456999998 6665442 1111 1256889999999887666667889999999 666443 3333333457899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEC
Q 001358          629 CFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      +++++|+++++...++.|..|+.
T Consensus       231 ~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          231 TAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EECSTTCEEEEETTTTEEEEEET
T ss_pred             EECCCCCEEEeccCCceEEEECC
Confidence            99999987666657789999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.50  E-value=2.6e-12  Score=136.88  Aligned_cols=240  Identities=8%  Similarity=-0.042  Sum_probs=166.5

Q ss_pred             CceEEeecCCCceEEE-EEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~lla-sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ...+++++|+|+ +++ +...++.|.+||..++.....                   ...+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence            778999999998 666 556778999999766543211                   11233567889999999966665


Q ss_pred             eCCCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~  493 (1092)
                      . ++.|.+||..++...    .+. .....+..++++++|+  ++++...++.|.+|+..+.............+..+++
T Consensus        85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 888999998775422    122 2235688999999998  6777777889999986655443322233345677777


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee
Q 001358          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1092)
                      .  +++.++++...++.|.+||................+..++++++|..+++...    ++.|.+||..+.........
T Consensus       158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~  231 (270)
T 1rwi_B          158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT  231 (270)
T ss_dssp             C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred             e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence            5  46677777777889999998766544333333356889999999966665532    45699999876544332212


Q ss_pred             ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 001358          574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       574 ~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~  611 (1092)
                      .   ...+.+++++++++.+++...++.|++++....+
T Consensus       232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            1   2568999999999877888889999999987654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=1.7e-12  Score=159.53  Aligned_cols=247  Identities=9%  Similarity=0.050  Sum_probs=164.0

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--  466 (1092)
                      +|...+..++|||||++||.++.+     ..|++||+.+|+.+..    ..+...+..++|+|| +  .|+.++.|+.  
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence            344578899999999999988654     4699999999875431    112223468899999 8  4555555443  


Q ss_pred             ------------EEEEECCCCce--eEEEec--CCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001358          467 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV  523 (1092)
Q Consensus       467 ------------i~vwd~~~~~~--~~~~~~--~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~  523 (1092)
                                  |++|++.++..  ...+..  +...+..+.|  ++||++|+..+.++     .|.+||+.++  ....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence                        89999988763  223332  3334677777  56888888777554     7999999876  3133


Q ss_pred             EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC--eEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358          524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~  601 (1092)
                      .+..+...+... ++|+|+.|+..+..+.....|++||+.++  .....+..+.   ..+..+.+. ++..+++...|+.
T Consensus       311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred             EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence            343343344444 35999999888765444678999999885  3333443333   456677777 5566777888888


Q ss_pred             EEEEECC-CCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC----CCeEEEEECCCCC
Q 001358          602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1092)
Q Consensus       602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~  655 (1092)
                      .++|.+. ++.....+..+. ...+..++++|+++.++....    .++|++||+.+++
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7777554 456666665432 234678889999886664432    4789999998765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.48  E-value=1.6e-10  Score=124.94  Aligned_cols=280  Identities=10%  Similarity=0.027  Sum_probs=191.2

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .....+.+++++++|+ +.++...++.|.+||.. ++.... .                 +..+...+.++++.++|++.
T Consensus        17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~   76 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW   76 (300)
T ss_dssp             STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred             CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence            3445889999999998 66666677899999987 543321 1                 22344679999999999988


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE-EEecCCcceEE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS  490 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~  490 (1092)
                      ++...++.|..||.. ++. . ...+......+.++++.++|+  ++++...++.|..||.. ++... .+......+..
T Consensus        77 v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           77 FTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             EEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             EEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence            877767889999988 543 2 112333446789999999998  67777668899999987 65542 22333456777


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      +++.  +++.+.++...++.|..++. .++... ........+..+++.++|+..++...    .+.|..||. +++...
T Consensus       151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~  222 (300)
T 2qc5_A          151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE  222 (300)
T ss_dssp             EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred             EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence            8774  46677776666888999988 333322 22233456889999999986665432    446999998 555443


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001358          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  649 (1092)
                      .....  ....+.++++.++++..++...++.|..|+. ++... .+........+.+++++++|++.++.. . .|..+
T Consensus       223 ~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          223 YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            21111  1356889999999886666656789999998 45443 333332334578999999998665544 4 66666


Q ss_pred             EC
Q 001358          650 ET  651 (1092)
Q Consensus       650 ~~  651 (1092)
                      +.
T Consensus       297 ~p  298 (300)
T 2qc5_A          297 NL  298 (300)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=6.7e-12  Score=133.61  Aligned_cols=240  Identities=10%  Similarity=-0.057  Sum_probs=166.4

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       398 ~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      ...+++++++|++++ +.+.++.|.+||..++....   ....+...+.+++++++|+  ++++.. ++.|.+||..++.
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence            788999999999777 44677889999987653211   1123335688999999998  566655 8899999977654


Q ss_pred             eeEEEe-cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358          477 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       477 ~~~~~~-~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      . ..+. .....+..+++.+  ++.++++...++.|.+|+..+.............+..++++++|+.+++...    .+
T Consensus        99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~  171 (270)
T 1rwi_B           99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN  171 (270)
T ss_dssp             C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred             E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence            3 3332 2335678888854  6677777778899999976554443322223345778999999986665433    45


Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001358          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  635 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  635 (1092)
                      .|.+||..++..........   ..+..+++++++..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred             EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence            79999988776543322222   568899999999766666678899999987655433 221 2223578999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCC
Q 001358          636 LLAVIANENRIKILETPESN  655 (1092)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~~  655 (1092)
                      ++++...++.|++++....+
T Consensus       247 l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          247 VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEEGGGTEEEEECCCGGG
T ss_pred             EEEEECCCCEEEEEcCCCcc
Confidence            88888889999999987653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.47  E-value=2.2e-11  Score=134.98  Aligned_cols=205  Identities=14%  Similarity=0.086  Sum_probs=143.1

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe-
Q 001358          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-  881 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-  881 (1092)
                      ..++|+|||+++.++.   ++.|.+.|+.+++.+.++.....    ....|++.+.+++.+.||.+.+.+..+++.... 
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            4568899999888875   36899999999999888764321    333442446667777888888888866655432 


Q ss_pred             ---eccccCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc-C---CCCCceEEEEecCCCEEEE
Q 001358          882 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       882 ---l~~h~~~V-~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~~s~dg~~la~  953 (1092)
                         +.....++ ..+.|+++++.++..+..+.|.+.|+.+........+....... .   .......++++||++.+.+
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence               22112222 23578999998888888899999999765432211111110000 0   0012334799999998777


Q ss_pred             Ee-----------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceEEee
Q 001358          954 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       954 ~~-----------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      ..           .+.|.++|..+.+.+..+..+  ....++.|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus       336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            42           247999999999999886544  3588999999999 888887 5899999999999999887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.45  E-value=1.1e-11  Score=137.49  Aligned_cols=281  Identities=11%  Similarity=0.093  Sum_probs=191.4

Q ss_pred             CCCceEEEEEcCc----CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe----
Q 001358          344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY----  415 (1092)
Q Consensus       344 pdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~----  415 (1092)
                      |++++++++...+    +.|.+.|..+++.+.....                   -..+  .+++||||++|+++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence            5666666665544    7999999999988865221                   1233  799999999998886    


Q ss_pred             ------CCCEEEEEEccCCCCccceEEec--c---cccceeEEEeeCCCCcEEEEEEe--CCCcEEEEECCCCceeEEEe
Q 001358          416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       416 ------~d~~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~~~  482 (1092)
                            .++.|.++|..+++.+..+. +.  .   ....-..++|+|||++  ++.+.  .++.|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  36789999999987665432 22  0   0123457899999994  55544  36889999999999998886


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCce-EEEEEecCCCEEEEEecCCCCceeE
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~i-~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                      ....    ....+... ..+++.+.||.+.+.+....+....    +.....++ ..+.+++++..++....    .+.+
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V  288 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI  288 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence            4221    12222222 4667778888888888854443321    11112221 23567899988877654    4569


Q ss_pred             EEEeCCCCeEE--EEEeec-----c--ccCCceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceEEEEeC
Q 001358          558 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       558 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~~~~~~~~~~l~~~s~----------dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      ++.|..++...  ..+...     .  ........++++|+++++++...          .+.|.++|..+.+.+..+..
T Consensus       289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v  368 (426)
T 3c75_H          289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL  368 (426)
T ss_dssp             EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence            99998765432  111110     0  00011223689999998887642          35799999999999999876


Q ss_pred             CCCCCCCceEEEccCCC-EEEEEe-CCCeEEEEECCCCCeeeec
Q 001358          619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA  660 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1092)
                      ..   ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus       369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            53   258899999999 888887 5899999999999888775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=7.9e-12  Score=153.67  Aligned_cols=249  Identities=11%  Similarity=0.017  Sum_probs=158.3

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +|...+..++|||||++++.+.+.+|    +|++||+.+|+.+.. .                 .  +...+..++||||
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD  219 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN  219 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC
Confidence            34447889999999996444433333    599999999987542 0                 0  1112356899999


Q ss_pred             CCEEEEEeCCCE--------------EEEEEccCCCCcc-ceEEecccccceeEEEeeCCCCcEEEEEEeC-----CCcE
Q 001358          408 GSLLGVAYSKHI--------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTI  467 (1092)
Q Consensus       408 g~~las~~~d~~--------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i  467 (1092)
                       +.|+.++.++.              |++|++.++.... .......+...+..+.|||||++  |+..+.     ...|
T Consensus       220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l  296 (741)
T 1yr2_A          220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV  296 (741)
T ss_dssp             -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred             -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence             99998876543              8999998765321 11122233345889999999994  444443     3489


Q ss_pred             EEEECCCC--ceeEEEecCCcceEEEeecccCCccEEEEEecC----CeEEEEEcCCCC-c-eEEecCCCCceEEEEEec
Q 001358          468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSA  539 (1092)
Q Consensus       468 ~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~-~-~~~~~~~~~~i~~~~~s~  539 (1092)
                      ++||+.++  ++...+..+...+....+   +++..|+..+.+    +.|.+||+.+.. . ...+..+...+..++++ 
T Consensus       297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-  372 (741)
T 1yr2_A          297 HVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-  372 (741)
T ss_dssp             EEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred             EEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence            99999887  425566556555544432   355667666653    459999988742 2 33334444456677776 


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCce
Q 001358          540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL  612 (1092)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~  612 (1092)
                      ++..+++...  ++...|++++.. +...+.+..+.  ...+..+.++|+++.++...    ..++|++||+.+++.
T Consensus       373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4455555544  335556777764 55555555432  36788899999988666432    457899999988873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.39  E-value=1.1e-10  Score=127.32  Aligned_cols=250  Identities=13%  Similarity=0.098  Sum_probs=165.2

Q ss_pred             ccCCCCceEEeecCCCceEEEE-------EcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llas-------g~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      .+.-....+++|+++|+ ++++       +..++.|.+||..+++.... ..              ....++...+.+++
T Consensus        14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~   77 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ   77 (314)
T ss_dssp             ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred             hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence            33444788999999997 6666       56678999999888875421 00              00122446789999


Q ss_pred             ECCC-CCEEEEEeCCCEEEEEEccCCCCccc-eEEecc-cccceeEEEeeCCCCcEEEEEEeCC---------------C
Q 001358          404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K  465 (1092)
Q Consensus       404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d---------------~  465 (1092)
                      ++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+  ++++...+               +
T Consensus        78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence            9999 76555544 4469999988 653211 000011 224588999999998  56665544               5


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeec--ccCCccEE-EEEecCCeEEEEEcCC-CC-----ceEEecCCC-CceEEE
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFI-FSISVDGKIKAWLYDS-LG-----ARVDYDAPG-LGCTRM  535 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~l-~s~~~dg~i~vwd~~~-~~-----~~~~~~~~~-~~i~~~  535 (1092)
                      .|..||.. ++..... .+......++++  .+++++.+ ++...++.|.+|+++. +.     ....+..+. ..+..+
T Consensus       154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            67777765 5544332 333445677775  11566555 4445688999999762 22     112233332 567889


Q ss_pred             EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 001358          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK  609 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~  609 (1092)
                      +++++|+..++...    ++.|.+||..+++.+..+..+.   ..+.+++++|+++.|+++ ..++.|..|++..
T Consensus       232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999988777643    4569999998788777776554   678999999999966555 4568899998864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=1.6e-09  Score=117.04  Aligned_cols=243  Identities=12%  Similarity=0.027  Sum_probs=169.1

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +......+.++++.++|+..++...++.|.+||.. ++...  ..+..+...+.++++.++|.  ++++...++.|..||
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS   89 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence            34456788999999999988877778899999988 54221  12333446789999999998  667666678899999


Q ss_pred             CCCCceeE-EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEecCCCEEEEEec
Q 001358          472 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      .. ++... .+......+..+++.  +++.++++...++.|..+|.+ ++.. .........+..+++.++|+..++...
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence            77 65432 222234567788875  466777777778899999887 3333 223334457889999999996555432


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          .+.|..+|. +++... +.... ....+..+++.++++..++....+.|.+|+. ++..... ........+..++
T Consensus       166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~  236 (300)
T 2qc5_A          166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT  236 (300)
T ss_dssp             ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred             ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence                456999998 565543 32211 1256889999999876666666788999998 5554433 2222234578899


Q ss_pred             EccCCCEEEEEeCCCeEEEEECC
Q 001358          630 FNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ++++|++.++...++.|..|+..
T Consensus       237 ~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          237 AGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ECSTTCEEEEETTTTEEEEECTT
T ss_pred             ECCCCCEEEeccCCCeEEEECCC
Confidence            99999877666667899999983

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.36  E-value=3.9e-10  Score=126.90  Aligned_cols=242  Identities=12%  Similarity=0.012  Sum_probs=164.2

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ...+.++|+|+|+ |+++...++.|++||..++.....                   ... ..... ++|+|+++.|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4688999999998 788888889999999988765532                   112 22333 9999999999998


Q ss_pred             eCCC--EEEEEEccCCCCccceEEecc-cccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE----EecCCcc
Q 001358          415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP  487 (1092)
Q Consensus       415 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----~~~~~~~  487 (1092)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            7765  799999887654332211112 4556889999995552  44467788999999987764322    2222222


Q ss_pred             e--EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC---------------CCceEEEEEecCCCEEEEEecC
Q 001358          488 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       488 v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------------~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                      -  ..++|++. ++.++++...++.|+.|+.+..  ...+.+.               -.....++++++|+.+++-.  
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~--  341 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG--  341 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence            2  27888653 3567777778899999987654  2222221               13478899999999655543  


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeecc------------ccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                       .+++.|+.|+..++.. ..+.++.            ........+++++++..+++-..++.|+.+++
T Consensus       342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             0266899999877764 4444431            00145889999999877777778888887765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.35  E-value=2e-10  Score=125.18  Aligned_cols=245  Identities=9%  Similarity=0.066  Sum_probs=163.5

Q ss_pred             cEEEEEEecCCcEEEE-------eecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC-CCCCCCCeeE
Q 001358          736 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC  807 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~-------~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~v~~  807 (1092)
                      ...+++|+++|..+++       ...++.|..|+....                      ... ....+ ..++...+.+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~-~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKT-VICKPEVNGYGGIPAG   75 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEE-EEECCEETTEECCEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEE-EEEecccCCCCCCCce
Confidence            4568899999987777       466777887764332                      211 11000 0013356889


Q ss_pred             EEEecC-CCEEEEEeCCeEEEEEcCCceeeEE-ecC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001358          808 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S  866 (1092)
Q Consensus       808 ~~~s~d-g~~l~~~sdg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g  866 (1092)
                      ++++++ |+++++..++.|.+||.. ++.... ...    +...+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 776666656689999988 665432 221    123578999999 78887776655               5


Q ss_pred             eEEEEEcCCceeeEeeccccCCeEEEEEc----CCCCEEE-EEeCCCcEEEEEcC-CCceeeeeeeecCCCCcCCCCCce
Q 001358          867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILV-SSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~l~-s~s~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      .|..|+.. ++... +..+......++|+    |+++.|. +...++.|.+|+++ .++...........+...  ..+.
T Consensus       154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD  229 (314)
T ss_dssp             EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred             eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence            67777766 55433 33344567889999    9997654 44567899999987 443322223333332210  1467


Q ss_pred             EEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEE-EEeCCCcEEEEECCCC
Q 001358          941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       941 ~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~-t~s~Dg~i~vwd~~~~ 1010 (1092)
                      .++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++...
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            89999999988874 6788999999877766553 34557899999999999555 4445678999998753

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.33  E-value=2.3e-10  Score=139.06  Aligned_cols=252  Identities=11%  Similarity=0.046  Sum_probs=165.7

Q ss_pred             cCCCCceEEeecCCCceEEEEEcC----cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~----d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +|...+..++|||||++++.+.+.    ..+|+|||+.+|+.+.. .                 +.  ......++|+ |
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-D  184 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-G  184 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-T
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-C
Confidence            456678899999999964444332    35799999999986542 1                 11  1112467899 9


Q ss_pred             CCEEEEEeCCC-------------EEEEEEccCCCCcc-ceEEecc-cccceeEEEeeCCCCcEEEEEEe---CCCcEEE
Q 001358          408 GSLLGVAYSKH-------------IVQLYAYHGGSDAR-QQLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV  469 (1092)
Q Consensus       408 g~~las~~~d~-------------~i~iwd~~~~~~~~-~~~~l~~-h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~v  469 (1092)
                      |+.|+.++.+.             .|++|++.++..-. .+..... |...+..+.|||||+++ +++.+   .++.|++
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~  263 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV  263 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence            99999998773             49999998764321 1112223 44557889999999963 33333   2358999


Q ss_pred             EECCCCc-eeEEEecCCcceEEEeecccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCceEEEEEecCCCE
Q 001358          470 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR  543 (1092)
Q Consensus       470 wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~  543 (1092)
                      ||+.++. ....+..+....... +.+. ++.+++....+   +.|..+++.+...  ...+..+...+.  .|+++++.
T Consensus       264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~  339 (693)
T 3iuj_A          264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY  339 (693)
T ss_dssp             EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred             EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence            9998774 455666666655544 3322 33455555443   5799999987654  234444444454  89999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCceE
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL  613 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----g~i~iwd~~~~~~~  613 (1092)
                      |+..... ++...|++||..++. .+.+....  ...+..+.++++++.++....+    ++++.||+.+++..
T Consensus       340 lv~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          340 LFAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            8877643 345679999988554 34443222  2457777888888877765544    88999999887644

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.33  E-value=3.4e-10  Score=123.61  Aligned_cols=256  Identities=9%  Similarity=0.040  Sum_probs=169.2

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCce-----------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  872 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1092)
                      .+..+++++...++++|+...+.+|++++.+           ..... .+.. |+.++|   |+.+|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence            6889999999999999998888889976544           11222 3555 999999   57899988 889999999


Q ss_pred             cCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEE
Q 001358          873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1092)
Q Consensus       873 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la  952 (1092)
                      +.+.........|..++.++.+.+..  +++++.||.|.+||++++....   +.         ..|++++|||+| ..+
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~---------~~Vs~v~WSpkG-~~v  177 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA---------QNVTSFDVTNSQ-LAV  177 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE---------ESEEEEEECSSE-EEE
T ss_pred             chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc---------CCceEEEEcCCc-eEE
Confidence            98876666677788889988887653  8889999999999999765321   11         259999999999 444


Q ss_pred             EEeCCcEEEEEcCCcee--eeeec-----c---CCCcCEEEEEEecCCCEEEEEeCC-----------CcEEEEECCCCc
Q 001358          953 LVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSFVD-----------GTLSIHEASNLE 1011 (1092)
Q Consensus       953 ~~~d~~v~lwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~s~D-----------g~i~vwd~~~~~ 1011 (1092)
                      ...||++++|+...++.  ...+.     .   +|...|.++.|.+++.++++-+..           ..+++-....+.
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~  257 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGS  257 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCC
Confidence            47899999999887775  44331     1   478899999999999999874321           145666633333


Q ss_pred             eEE-ee-ccccccCCCCccCcccceE-EEECCCCCCEEEEEeCCC-cEEEEecCCCCCccccCCCCCcccCCCCCCcc
Q 001358         1012 VQC-RI-LSTAYLRPTTSCLHVYPHA-IAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSE 1085 (1092)
Q Consensus      1012 ~~~-~~-~~~~~~~~~~~~~~v~~~~-~~~~p~~~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1085 (1092)
                      ... .+ ...............+... -.|.|+..+++++++.-. .|.+++-.    . ...+..|..+++.+.+.+
T Consensus       258 ~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~----~-~~~~~~Ds~Ra~lPl~~~  330 (388)
T 1xip_A          258 ASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK----Q-VIEPSQDSERAVLPISEE  330 (388)
T ss_dssp             EEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS----S-EEEESSGGGCCBCCBCTT
T ss_pred             ceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc----c-EEeecCccccceeccCCC
Confidence            221 11 1110011100011112111 235443334555555544 57777532    1 233445567777766665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.31  E-value=9e-10  Score=118.64  Aligned_cols=228  Identities=10%  Similarity=0.052  Sum_probs=149.8

Q ss_pred             cEEEEEEecCCcEE-EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358          736 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      -..+..|++++..+ ++...++.|..|+...                      +. .....     ....+.+++++++|
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~~~~i~~~~dG   65 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQ-VQRVT-----MDAPVSSVALRQSG   65 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CC-EEEEE-----CSSCEEEEEEBTTS
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEe-----CCCceEEEEECCCC
Confidence            34578889865544 4444567777776432                      22 11111     34568899999999


Q ss_pred             CEEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-ceeeE
Q 001358          815 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS  880 (1092)
Q Consensus       815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~-~~~~~  880 (1092)
                      +++++ .++.|.+||..+++.......    ....+..++++| +++++++...+         ..-.||.+.. ++. .
T Consensus        66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~  142 (297)
T 3g4e_A           66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K  142 (297)
T ss_dssp             SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred             CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence            95554 577899999988765433221    123578899999 78877654322         2334555543 333 3


Q ss_pred             eeccccCCeEEEEEcCCCCEE-EEEeCCCcEEEEEc--CCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC
Q 001358          881 KLEGHSKRVTGLVFSDALNIL-VSSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  956 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l-~s~s~Dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d  956 (1092)
                      .+..+......++|+||++.| ++.+.++.|.+|++  .++.....+.+.......   ..+..+++.++|++.++. ..
T Consensus       143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred             EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence            333344557889999999876 45556788999998  455543333333332211   246789999999988775 45


Q ss_pred             CcEEEEEcCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEeC
Q 001358          957 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV  998 (1092)
Q Consensus       957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~s~  998 (1092)
                      +.|..||..+++.+..+. .+...+++++|. ||++.|+.++.
T Consensus       220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence            779999999898877643 445789999999 89887766654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.30  E-value=9.5e-10  Score=118.48  Aligned_cols=233  Identities=12%  Similarity=0.094  Sum_probs=156.0

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      ..+..-..+..|+|++..++.+...++.|..||..++....                    + .....+.+++++|+|++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l   67 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGY   67 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCE
Confidence            33334566899999766688888888999999999876431                    1 13467999999999996


Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEecc--cccceeEEEeeCCCCcEEEEEEeC---------CCcEEEEECCCCceeE
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~l~l~s~~~---------d~~i~vwd~~~~~~~~  479 (1092)
                      +++.  ++.|.+||.++++... ......  ....+..++++|+|+  ++++...         .....||.+.....+.
T Consensus        68 ~v~~--~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~  142 (297)
T 3g4e_A           68 VATI--GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK  142 (297)
T ss_dssp             EEEE--TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred             EEEE--CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence            5553  4569999998875321 111111  224588999999998  4554322         1234555544322233


Q ss_pred             EEecCCcceEEEeecccCCccEE-EEEecCCeEEEEEcC--CCCce-----EEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          480 SFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~-----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .+..+....+.++|++  +++.+ ++.+.++.|.+|+++  ++...     ..+.........+++.++|+..++...  
T Consensus       143 ~~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~--  218 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN--  218 (297)
T ss_dssp             EEEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET--
T ss_pred             EEeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC--
Confidence            3333444567888854  56555 556678899999984  33211     122222346788999999987766643  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeC
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD  598 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~  598 (1092)
                        .+.|..||..+|+.+..+..+.   ..+.+++|. |+++.|++++.
T Consensus       219 --~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          219 --GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             --TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred             --CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence              4569999999999998887765   678999998 88888877654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.30  E-value=8e-06  Score=96.36  Aligned_cols=532  Identities=9%  Similarity=-0.000  Sum_probs=290.3

Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceE
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      +|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            45554 45568999998654211 11121 2345789999997764 556666788999999876544333332224466


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      .+++.+. ++.+.++-...+.|.+.+++...........-.....+++.|....|+..-..  ....|...++.......
T Consensus        84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred             eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence            7777543 34566666677889999987665444443444567899999976666665321  14568888876554433


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEE
Q 001358          570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i  648 (1092)
                      ....    ......+++++++..|+.+. ..+.|...|+..... ..+...  ......+++.. +.++++-...+.|..
T Consensus       161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence            3322    25688999999887777765 567899999876544 333222  22345777765 445555555788988


Q ss_pred             EECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceeccc
Q 001358          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1092)
Q Consensus       649 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1092)
                      .|..+++....+.........+.+.......  +       .+.....++.    +   ..+.+-..  .....|.   -
T Consensus       233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~-------~n~C~~~ng~----C---~~~C~~~~--~~~~~C~---C  291 (628)
T 4a0p_A          233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--G-------WNECASSNGH----C---SHLCLAVP--VGGFVCG---C  291 (628)
T ss_dssp             EETTTCCSCEEEECSCCSCCEEEEECGGGSC--C-------CCTTTTTGGG----C---SSEEEEET--TTEEEEE---C
T ss_pred             EECCCCCceEEEecCCCCcceeeeeeecccc--c-------ceEeccCCCC----c---chhhhcCC--CCCeeEE---c
Confidence            8877775555444333333333322111000  0       0000000000    0   00000000  0000000   0


Q ss_pred             CC--ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358          729 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       729 ~~--~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~  806 (1092)
                      +.  ........|.   +....++.+. ...|+-..+...                    ... -.....   ..-..+.
T Consensus       292 ~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~  343 (628)
T 4a0p_A          292 PAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVR  343 (628)
T ss_dssp             STTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEE
T ss_pred             CCCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCce
Confidence            00  0000001111   1112222222 223322221110                    000 001111   1234577


Q ss_pred             EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358          807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      .++|.+.+..|..+.  .+.|+.++.........+..      ....+..+|+....+++..+-+..+.|.+.+++ |+.
T Consensus       344 ~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~  422 (628)
T 4a0p_A          344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS  422 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE
T ss_pred             EEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe
Confidence            899999877777776  47788888764433333332      234678999998335555666677899999987 444


Q ss_pred             eEee-ccccCCeEEEEEcC-CCCEEEEEeCCC--cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358          879 ISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       879 ~~~l-~~h~~~V~~l~~sp-dg~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      ...+ ........+|++.| .|.++++-....  .|...+++......  .+..   ..   .....+++.++++.|..+
T Consensus       423 ~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~gla~D~~~~~LYw~  494 (628)
T 4a0p_A          423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFS---GL---SKPIALALDSRLGKLFWA  494 (628)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEec---cC---CCccEEEEeCCCCEEEEE
Confidence            4443 33456789999999 555555543332  46666665432111  1211   11   257899999998888775


Q ss_pred             e--CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee
Q 001358          955 H--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       955 ~--d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      .  .+.|..+++. |.....+.........+++... +..+++=...+.|...|..+|+....+
T Consensus       495 D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          495 DSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             ETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             eCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            3  4679999985 4444444433344567777654 555555555677888888877654443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.29  E-value=6.2e-11  Score=130.73  Aligned_cols=273  Identities=11%  Similarity=0.015  Sum_probs=175.5

Q ss_pred             CCceEEeecCCCceEEEEEc--CcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      ..+..++++|+|+ ++++..  .++.++||.+.+++..   .++-|..          ...+|-..+..++|+++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence            5899999999998 666653  2343667766544322   2211110          0224667899999999998776


Q ss_pred             EEeC-----CCEEEEEEccCCCCccceEEec----ccccceeEEEeeCCCCcEEEEEEe---CCCcEEEEECCCCceeEE
Q 001358          413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       413 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~vwd~~~~~~~~~  480 (1092)
                      +-..     ++.|.+||+.+++.++.. .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6544     578999999988644422 221    12345689999987653 456655   688999999999987777


Q ss_pred             EecCCcceE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       481 ~~~~~~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      +.+|..... ...+  ..++..+.+.+.+|.++.|.              ..+..++++|||+.|+.+...   ...++.
T Consensus       161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~  221 (343)
T 2qe8_A          161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR  221 (343)
T ss_dssp             CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred             ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence            665432211 1222  22556677777888876663              145789999999998887642   224666


Q ss_pred             EeCC---CCe-----EEE--EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358          560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                      ++..   .+.     ...  ...++.   .....++++++|..+++...++.|.+||..+++........ .......++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va  297 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN  297 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence            6532   111     000  111222   34567899999988888888999999998666654433322 223467899


Q ss_pred             EccCCCEEEEEeCCCeE
Q 001358          630 FNKNGTLLAVIANENRI  646 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i  646 (1092)
                      |.+++.++++....+.+
T Consensus       298 ~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          298 FGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             ECTTSCEEEEECCGGGS
T ss_pred             ECCCCcEEEEeCccccc
Confidence            99998877777654433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.28  E-value=6.3e-10  Score=120.43  Aligned_cols=239  Identities=12%  Similarity=0.044  Sum_probs=160.4

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ...+..|..+.......+|+|+|+.++.++..++.|..|+. +++.. .                   +..+...+..++
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~   92 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA   92 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence            33445555555678899999999878889888999999998 45422 1                   223566789999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCccceEEeccc-ccceeEEEeeCCCCcEEEEE----EeC-------------CC
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK  465 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~l~l~s----~~~-------------d~  465 (1092)
                      ++++|+++++...++.|.+|+.. ++.........+. ...+.++++.++|+  ++++    |..             .+
T Consensus        93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A           93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence            99999977776666789999986 4421111111111 13477899999998  6665    321             25


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA  536 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~  536 (1092)
                      .|..||..+++.....  .....+.++|+  +|++.|+.+...      +.|.+|++.....   .............++
T Consensus       170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~  245 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC  245 (305)
T ss_dssp             EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred             eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence            6888887777654433  33456778884  566767666654      7899999875431   111122233455789


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~  601 (1092)
                      +.++|+..++. .    + .|.+|+. .++.+..+....    .+..++|+++++.|+.++.++.
T Consensus       246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEE
T ss_pred             ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeE
Confidence            99999955443 2    2 3999998 577777776543    4788999999998988887653

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=2.1e-10  Score=125.20  Aligned_cols=272  Identities=10%  Similarity=-0.031  Sum_probs=174.6

Q ss_pred             eEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe--------
Q 001358          348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--------  415 (1092)
Q Consensus       348 ~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~--------  415 (1092)
                      +++++...++    +|.+.|..+++.+.+..                  .+. .+  .+++||||++++++.        
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~------------------vG~-~P--~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSL------------------GAF-LS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEe------------------CCC-CC--ceEECCCCCEEEEEccccccccc
Confidence            4556655555    78899999998887522                  122 34  799999999999986        


Q ss_pred             --CCCEEEEEEccCCCCccceEEecc-c----ccceeEEEeeCCCCcEEEEEEe--CCCcEEE--EECCCCceeEEEecC
Q 001358          416 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH  484 (1092)
Q Consensus       416 --~d~~i~iwd~~~~~~~~~~~~l~~-h----~~~v~~~~~s~d~~~l~l~s~~--~d~~i~v--wd~~~~~~~~~~~~~  484 (1092)
                        .++.|.+||+.+++.+..+. +.+ .    ......++|+|||++  ++.+.  .+..|.+  +|+.+   +.++...
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence              36789999999998766432 220 0    123568999999995  44443  3567888  99877   4555321


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCC-----CCceE----EecCCCCceEEEEEecCCCEEEEEecCCCCce
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      . .   ..+.+.+. ..+++.+.||.+.+.|+.+     ++...    .+.....+.   . ++++..++..+.     +
T Consensus       166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~  231 (368)
T 1mda_H          166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S  231 (368)
T ss_dssp             S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred             C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence            1 1   11223322 3456667788888888876     22111    011112233   3 677776666553     3


Q ss_pred             eEEEEeCCCCe--EEEEEeec-------cccCCceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceEEEEe
Q 001358          556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~s~---------dg~i~iwd~~~~~~~~~~~  617 (1092)
                      .+.+.|..++.  .+..+...       .........++++|++++++++..         ++.+.++|+.+.+.+..+.
T Consensus       232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~  311 (368)
T 1mda_H          232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS  311 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred             EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence            58888886542  22222110       000011122679999999887643         2356699999999998887


Q ss_pred             CCCCCCCCceEEEccCCCE-EEEEe-CCCeEEEEECCCCCeeeecccc
Q 001358          618 AGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       618 ~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                      ...   ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus       312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            553   3688999999984 55555 5899999999999888877643

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.26  E-value=3.7e-10  Score=137.32  Aligned_cols=245  Identities=9%  Similarity=0.063  Sum_probs=160.6

Q ss_pred             CCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC---
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK---  465 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~---  465 (1092)
                      +|...+..++|||||++||.+.     ...+|++||+++|+.+..  .+.  ......++|+ ||+  .|+.++.+.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~--~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNE--GFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCC--EEEEEEecCccc
Confidence            4566788999999999999653     235799999999875431  111  1123678999 999  566666553   


Q ss_pred             ----------cEEEEECCCCce----eEEEec-CCcceEEEeecccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001358          466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY  525 (1092)
Q Consensus       466 ----------~i~vwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~  525 (1092)
                                .|++|++.++..    +..... |...+.++.+  ++||++|+....    +..|.++|+.+.. ....+
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                      499999987653    222233 3444666666  557777754432    2479999988764 34444


Q ss_pred             cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeC-CC--
Q 001358          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DH--  600 (1092)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~-dg--  600 (1092)
                      ..+....... ++++|..|+..+........|+.+|+.++..  .+.+..+.   ..+.  .|++++++|+.... ++  
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence            4444444444 7788887776665433367899999988754  34455554   3343  88899988887654 43  


Q ss_pred             eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCC
Q 001358          601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN  655 (1092)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~  655 (1092)
                      .|++|++.++ ....+..... ..+..+.+++++..++....+    +.+..||+.+++
T Consensus       351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            6889998744 4455543321 234566677888877766554    889999987764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=3.1e-10  Score=123.83  Aligned_cols=196  Identities=11%  Similarity=0.005  Sum_probs=127.7

Q ss_pred             eEEEEecCCCEEEEEe---CCeEEE--EEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----
Q 001358          806 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----  875 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----  875 (1092)
                      ..++++|||++++++.   ++.+.+  +|..+   +.++.... .   ..+.|++...+++.+.||.+.+.++.+     
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            3578888888888875   256878  88876   34443211 1   223343455666677888888889887     


Q ss_pred             ceeeEe----eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecC------CCCcCCCCCceEEEEe
Q 001358          876 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH  945 (1092)
Q Consensus       876 ~~~~~~----l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s  945 (1092)
                      ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+........+...      .+..+  .....++|+
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s  272 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL  272 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence            543321    11122343   3 667777766677 8999999976432211111111      01000  112337899


Q ss_pred             cCCCEEEEE-e-C--------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEECCCCceE
Q 001358          946 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus       946 ~dg~~la~~-~-d--------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~s-~Dg~i~vwd~~~~~~~ 1013 (1092)
                      ||++.+.++ . .        +.+.++|+.+++.+..+..+.  ....++|+|||+ .+++.. .+++|.++|+.+++.+
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            999988874 3 2        357799999999888765443  688999999998 456666 5899999999999999


Q ss_pred             Eeec
Q 001358         1014 CRIL 1017 (1092)
Q Consensus      1014 ~~~~ 1017 (1092)
                      .++.
T Consensus       351 ~~I~  354 (368)
T 1mda_H          351 SSVE  354 (368)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            8886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=3.9e-09  Score=118.72  Aligned_cols=241  Identities=9%  Similarity=0.054  Sum_probs=163.2

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCC--cEEEEECCC
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVT  474 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~  474 (1092)
                      ..+..++|+|+|+++++...++.|++||..++....   .... ..... ++|+++++  .|+.+..++  .|.+|+..+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence            468899999999988887778899999998865332   1222 22333 99999999  677777655  799999877


Q ss_pred             CceeEEE----ecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCce--EEEEEecCCCEE
Q 001358          475 GSRTYSF----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGC--TRMAYSANGRRL  544 (1092)
Q Consensus       475 ~~~~~~~----~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~i--~~~~~s~dg~~l  544 (1092)
                      +.....+    ......+.++++++. ++ .|+.+..++.|..||.........    .......-  ..++|+|++..|
T Consensus       204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          204 GWAPTRIGQLGSTFSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             TTCEEEEEECCTTSCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CceeEEeeeccchhcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            6654444    224456777888542 34 455577788999999987654332    22222222  289999975555


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeecc------------ccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ  611 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~  611 (1092)
                      +.+..   ..+.|+.|+....  +..+.++.            ........++++|+++.+++-+ .++.|+.|++.++.
T Consensus       282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            55532   2567999987644  33343321            0013478999999999777777 88999999987876


Q ss_pred             eEEEEeCCC------------CCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          612 LLTTIDAGG------------GLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       612 ~~~~~~~~~------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      .........            .......++++++|.++++-..++.|+.+++
T Consensus       357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            544332200            0123578999999888888888888887764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.22  E-value=5.8e-09  Score=113.87  Aligned_cols=225  Identities=13%  Similarity=0.030  Sum_probs=150.0

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      -..+.+|+|++..++.++..++.|..||..+++...                    + .....|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence            456789999876688888888999999998875331                    1 123579999999999987765 


Q ss_pred             CCCEEEEEEccCCCCccceEEec-c-cccceeEEEeeCCCCcEEEEEEeC------CCcEEEEECCCCceeEEEecCCcc
Q 001358          416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~-~-h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      .++ |.+||..+++... ..... + ....+.+++++|+|+  ++++...      .+.|..++  +++.. .+..+...
T Consensus       108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~  180 (326)
T 2ghs_A          108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI  180 (326)
T ss_dssp             TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred             CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence            444 9999998876321 11111 1 124688999999998  4544432      24555555  45443 33333345


Q ss_pred             eEEEeecccCCccEE-EEEecCCeEEEEEcC--CC-Cc-----eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEE
Q 001358          488 VYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1092)
                      .+.++|+  ++++.+ ++.+.++.|.+|+++  ++ ..     ...+.........+++.++|+..++...    .+.|.
T Consensus       181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~  254 (326)
T 2ghs_A          181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD  254 (326)
T ss_dssp             EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred             cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence            6678885  466655 444567899999986  43 21     1122223445778999999987776542    34699


Q ss_pred             EEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCC
Q 001358          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD  599 (1092)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~d  599 (1092)
                      .||. +++.+..+....   ..+.+++|+ ++++.|++++..
T Consensus       255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence            9998 677777776544   579999998 888877665543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=7.6e-10  Score=121.94  Aligned_cols=273  Identities=7%  Similarity=-0.012  Sum_probs=175.3

Q ss_pred             ccEEEEEEecCCcEEEEeec--CCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEec
Q 001358          735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~--dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~  812 (1092)
                      ..+..++++++|+.+++...  ++.+++|.+...      ....   ..-|..           ...++-..+..+++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g------~~~~---~p~~~~-----------~~~~~~~~p~gv~~d~   76 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD------GLIP---FPPQSG-----------NAIITFDTVLGIKSDG   76 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT------EEEE---SCCCCS-----------SCCCCCSCEEEEEECS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC------Ceec---CCCccc-----------CcccceeEeeEEEEcC
Confidence            46788999999998777542  343677776411      1000   000000           0112556789999999


Q ss_pred             CCCEEEEEe------CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCce
Q 001358          813 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE  877 (1092)
Q Consensus       813 dg~~l~~~s------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~  877 (1092)
                      +|+++++-.      ++.|.+||+.+++.+..+..+      ...+..++++++++..+++..   .++.|.+||+.+++
T Consensus        77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A           77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred             CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence            998766553      378999999999877766432      235689999983454555555   67899999999988


Q ss_pred             eeEeeccccCCeE-EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e
Q 001358          878 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H  955 (1092)
Q Consensus       878 ~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~  955 (1092)
                      ....+.+|..... ...++++|..+.+.+.|+.++.|..                      .+..++|+|||+.|.++ .
T Consensus       157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred             EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence            7777766533111 1445567878887888887765531                      25689999999988875 3


Q ss_pred             CC-cEEEEEcCC---ce-----eeeee-ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCC
Q 001358          956 ET-HLAIYEAEE---LT-----CLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1092)
Q Consensus       956 d~-~v~lwd~~~---~~-----~~~~~-~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1025 (1092)
                      .+ .+..++...   +.     ....+ ..++.+....++++++|.++++...++.|.+||..+|+......    .+  
T Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~--  288 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE--  288 (343)
T ss_dssp             SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred             CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence            33 455554321   10     00000 11234456789999999999999889999999996676432222    11  


Q ss_pred             CccCcccceEEEECCCCCCEEEEEeCCCcEEEEe
Q 001358         1026 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1026 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                         ....+..++++| ++.++++....+.+.+|+
T Consensus       289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred             ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence               123566889998 477888877665554443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=1.2e-08  Score=122.54  Aligned_cols=199  Identities=11%  Similarity=0.089  Sum_probs=134.0

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcc----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      .++.++.++.|..+|..+|+.+.++......          + ..+++    ++..++.++.|+.|..+|..+++.+..+
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            4666777899999999999999887643221          0 11222    3357888899999999999999988876


Q ss_pred             cCC-C----CceEEEEEecCCCEEEEEecCCC--CceeEEEEeCCCCeEEEEEeecccc---------------------
Q 001358          526 DAP-G----LGCTRMAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ---------------------  577 (1092)
Q Consensus       526 ~~~-~----~~i~~~~~s~dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~---------------------  577 (1092)
                      ... .    ..+.+.-.. .+..+++++...+  .++.|+.+|..+|+.+-.+......                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g  233 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence            654 1    112111111 2345555443211  2578999999999998777643210                     


Q ss_pred             --------CCceEEEEEcCCCCEEEEEeCCC-------------------eEEEEECCCCceEEEEeCCCCC-------C
Q 001358          578 --------HNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------P  623 (1092)
Q Consensus       578 --------~~~v~~~~~~~~~~~l~~~s~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~  623 (1092)
                              ......++++|++..++.++.++                   .|..+|..+|+.+..+....+.       .
T Consensus       234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~  313 (677)
T 1kb0_A          234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (677)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence                    01113578889999999887664                   5999999999999887753221       1


Q ss_pred             CCceEEEccCC---CEEEEEeCCCeEEEEECCCCCeeeec
Q 001358          624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAA  660 (1092)
Q Consensus       624 ~v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1092)
                      ....+....+|   ..+++++.+|.++++|..+++.+...
T Consensus       314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (677)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence            12223333477   68899999999999999999876654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=7.6e-09  Score=124.24  Aligned_cols=194  Identities=13%  Similarity=0.126  Sum_probs=135.5

Q ss_pred             CCeEEEEEcCCceeeEEecCCCCC--------------------------------eEEEEEcCCCCCEEEEEeCCC---
Q 001358          822 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS---  866 (1092)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~d~~~lasg~~dg---  866 (1092)
                      ++.|+.+|..+|+.+.++......                                ...++++| ++.+|+.++.++   
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w  267 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW  267 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence            467888888888887666432211                                13578899 677888887764   


Q ss_pred             ----------------eEEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCC---CEEEEEeCCCcEEEEEcCCC
Q 001358          867 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       867 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                                      .|..+|..+|+.+..++.  |.       ....-+....+|   +.++.++.+|.|.++|..++
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                            599999999999887653  31       122233444477   68999999999999999998


Q ss_pred             ceeeeeeeecC--------CCC------------c-----CC-C-CCceEEEEecCCCEEEEE-eC--------------
Q 001358          919 GIQTCRSLQTP--------DGV------------M-----TL-A-PSETHIQFHKDQTRFLLV-HE--------------  956 (1092)
Q Consensus       919 ~~~~~~~~~~~--------~~~------------~-----~~-~-~~v~~l~~s~dg~~la~~-~d--------------  956 (1092)
                      +..........        .+.            .     .. . ..-..++|+|++.++.+. .+              
T Consensus       348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence            86542221100        000            0     00 0 001367999999888773 21              


Q ss_pred             -----------------------------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          957 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       957 -----------------------------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                                                   +.|..||+.+++.+....  +..++....++.+|..+++++.||.+++||+
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                                         679999999999876643  3445556667888889999999999999999


Q ss_pred             CCCceEEeecc
Q 001358         1008 SNLEVQCRILS 1018 (1092)
Q Consensus      1008 ~~~~~~~~~~~ 1018 (1092)
                      .+|+.+.++..
T Consensus       506 ~tG~~lw~~~~  516 (677)
T 1kb0_A          506 ATGEKLWEAPT  516 (677)
T ss_dssp             TTCCEEEEEEC
T ss_pred             CCCceeeeeeC
Confidence            99999988873

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=7.6e-09  Score=124.50  Aligned_cols=383  Identities=11%  Similarity=0.106  Sum_probs=216.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcc----------e-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      .++.++.++.|..+|..+|+.+.++......          + ..+++    ++..++.++.|+.|..+|..+++.+...
T Consensus        72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            4677777899999999999999888643321          0 11111    2357888999999999999999988766


Q ss_pred             cCC-C-CceEEEEEe---cCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc----------------------
Q 001358          526 DAP-G-LGCTRMAYS---ANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL----------------------  576 (1092)
Q Consensus       526 ~~~-~-~~i~~~~~s---~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~----------------------  576 (1092)
                      ... . .....+..+   .++. ++++....  ..++.|+.||..+|+.+-.+.....                      
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            543 1 110111111   2444 44443211  1367899999999999877653110                      


Q ss_pred             ------cCCceEEEEEcCCCCEEEEEeCCCe-------------------EEEEECCCCceEEEEeCCCCC-------CC
Q 001358          577 ------QHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE  624 (1092)
Q Consensus       577 ------~~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~  624 (1092)
                            +......++++|++..++.++.++.                   |..||..+|+.+..+....+.       ..
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~  306 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH  306 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence                  0011125788899899999888764                   999999999999888753221       01


Q ss_pred             CceEEEccCCC---EEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          625 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       625 v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ........+|+   .++.++.+|.++++|..+++.+......... +...+.+.                     .+..+
T Consensus       307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~---------------------~~~pi  364 (689)
T 1yiq_A          307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK---------------------TGRPI  364 (689)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT---------------------TTEEE
T ss_pred             cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc---------------------CCCcc
Confidence            11112223565   7888999999999999999877544321100 00000000                     00000


Q ss_pred             eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      ....    . .|..    +.....+..|.......-..++++|+...+++...+....++......              
T Consensus       365 ~~~~----~-~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~--------------  421 (689)
T 1yiq_A          365 LDEE----N-AAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP--------------  421 (689)
T ss_dssp             ECHH----H-HCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred             cchh----h-cccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence            0000    0 0000    000111122222222233458899998888887776544443321100              


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC
Q 001358          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN  857 (1092)
Q Consensus       782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~  857 (1092)
                      .|....+. .         .....  +...|.   +....... +|.|..||+.+++.+..+..+.. ...-.++. .+.
T Consensus       422 ~~~~~~~~-~---------~~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg  487 (689)
T 1yiq_A          422 KRNPFKSM-Y---------QLGLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN  487 (689)
T ss_dssp             CCCSCTTS-C---------CCSSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred             cccccccc-c---------ccCcc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence            01110000 0         00000  000000   00000001 37899999999999888765432 22334555 566


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001358          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  903 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s  903 (1092)
                      ++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+..+.
T Consensus       488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            9999999999999999999999888754332 234677788875443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.18  E-value=1.9e-05  Score=93.16  Aligned_cols=520  Identities=8%  Similarity=-0.021  Sum_probs=270.6

Q ss_pred             CCEEEEEEccCCC-CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce-eEEEecCCcceEEEeec
Q 001358          417 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       417 d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~  494 (1092)
                      ...|+..++.+.. ...   .+...-.....++|++.+.. ++++-...+.|..++++.... ...+.........+++.
T Consensus        17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD   92 (619)
T 3s94_A           17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   92 (619)
T ss_dssp             SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred             cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence            4457888877542 111   11223345778999997774 445555677899999876532 22333333567788885


Q ss_pred             ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      +. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-..  ....|...++............
T Consensus        93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~  169 (619)
T 3s94_A           93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE  169 (619)
T ss_dssp             TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred             ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC
Confidence            53 34566666778899999998765544443444456789999987666655321  1346777776543332222222


Q ss_pred             cccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                         ......+++++++..|+.+. ..+.|...|+............  ......+++..+ ..+++-...+.|...|..+
T Consensus       170 ---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t  243 (619)
T 3s94_A          170 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT  243 (619)
T ss_dssp             ---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred             ---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence               25678999999877777654 5677888888654433322211  123457787665 4444445578899999887


Q ss_pred             CCeeeecccccccceeeeec-CCccccc--ccc---cC-CceeecCCCCCCcccceeeccccccceeceeeccCccceec
Q 001358          654 SNSVDAAGVLSDNLRKLSVN-PISTVTG--AGI---AN-GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~~~~~-~~~~~~~--~~~---~~-~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  726 (1092)
                      ++....+.........+++. +.....+  .+.   +. ....+.   +|......+...+|....              
T Consensus       244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l~--------------  306 (619)
T 3s94_A          244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKLL--------------  306 (619)
T ss_dssp             CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCBC--------------
T ss_pred             CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchheec--------------
Confidence            76555444332223333332 1110000  000   00 000110   010000000000000000              


Q ss_pred             ccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCee
Q 001358          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1092)
Q Consensus       727 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~  806 (1092)
                             .....|.   +..+.++..+..+.|+..++.....                    . .....+.   .-..+.
T Consensus       307 -------~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~~  352 (619)
T 3s94_A          307 -------ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHAI  352 (619)
T ss_dssp             -------TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSEE
T ss_pred             -------ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCccE
Confidence                   0000000   0011222223334444444332110                    0 0011111   223467


Q ss_pred             EEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee-c
Q 001358          807 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-E  883 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~  883 (1092)
                      .++|.+.+..|..+.  .+.|..++.........+...-.....+|+.+.++++.++-+..+.|.+.++.... ...+ .
T Consensus       353 ~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~  431 (619)
T 3s94_A          353 AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILIS  431 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC
T ss_pred             EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEE
Confidence            899998776666665  57899998875443333433335667899986355566666667899999987543 3333 3


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeC--CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcE
Q 001358          884 GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHL  959 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v  959 (1092)
                      ..-....+|++.|....|..+..  ...|...+++......  ...   ...   .....+++++++..|..+  ..+.|
T Consensus       432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~GlalD~~~~~LY~aD~~~~~I  503 (619)
T 3s94_A          432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVN---TSL---GWPNGLALDYDEGKIYWGDAKTDKI  503 (619)
T ss_dssp             TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEe---CCC---CCCeeeEEcccCCEEEEEECCCCEE
Confidence            34456889999997444444432  3566666766533211  111   111   257899999988887775  44678


Q ss_pred             EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                      ..+++.... ...+.........+++...+ ...++-...+.|..-+..+|.
T Consensus       504 ~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          504 EVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             EEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            888886433 33322222222344555433 344444445677777877773

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.17  E-value=6.5e-08  Score=108.20  Aligned_cols=151  Identities=15%  Similarity=0.071  Sum_probs=99.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCC---------cceE-EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~-~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  526 (1092)
                      .++.++.++.|..+|.++|+.+.......         ..+. ....    ++..++.++.++.|..+|..+++......
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            47778889999999999999987765422         2222 2222    33578888999999999999988877665


Q ss_pred             CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC--CceEEEEEcCCCCEEEEEeCCCeEEE
Q 001358          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI  604 (1092)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~s~dg~i~i  604 (1092)
                      ........... .+ ..+++++.    ++.|+.+|..+|+.+..+.......  .........  +..+++++.++.+..
T Consensus       131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred             CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence            44322111222 23 35555543    5679999999999887766533000  000111222  457888888999999


Q ss_pred             EECCCCceEEEEeCC
Q 001358          605 WDMNKVQLLTTIDAG  619 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~  619 (1092)
                      +|..+|+.+......
T Consensus       203 ~d~~tG~~~w~~~~~  217 (376)
T 3q7m_A          203 VLMEQGQMIWQQRIS  217 (376)
T ss_dssp             EETTTCCEEEEEECC
T ss_pred             EECCCCcEEEEEecc
Confidence            999999988777643

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.17  E-value=4.7e-10  Score=122.51  Aligned_cols=176  Identities=12%  Similarity=0.048  Sum_probs=132.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEEccCCCC--------ccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      .++.+++++...++++|+.++ +.+|+++....        ..... ...+.. |++++|  |++  +|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGD--QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence            689999999999999999986 67799764330        11111 224666 999999  888  67777 7899999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      ||+.+.........|..++.++.+.+.    .+++++.||.+.+||+.......    ....|++++|||+|  ++.+..
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET
T ss_pred             EEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc
Confidence            999887766677778888888776432    28889999999999998766543    33589999999999  455554


Q ss_pred             CCCCceeEEEEeCCCCeE--EEEEeec------cccCCceEEEEEcCCCCEEEE
Q 001358          550 SKEGESFLVEWNESEGAI--KRTYQGL------QLQHNSVSVVHFDTAKDQILA  595 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~--~~~~~~~------~~~~~~v~~~~~~~~~~~l~~  595 (1092)
                          ++.+++|+...+..  .+++...      ..+...|.++.|.+++.++++
T Consensus       181 ----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          181 ----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence                56699999888875  5566211      012478999999999888776

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=1.3e-08  Score=111.12  Aligned_cols=225  Identities=10%  Similarity=0.009  Sum_probs=145.3

Q ss_pred             EEEEEEecCCcEE-EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358          737 ISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       737 i~~l~~s~~g~~l-~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      ..+.+|++++..+ ++...++.|..|+....                      . .....     ....+.+++++++|+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~  102 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK  102 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence            4567899975544 44445677777764322                      1 11111     234688999999999


Q ss_pred             EEEEEeCCeEEEEEcCCceeeEEecC----CCCCeEEEEEcCCCCCEEEEEeC------CCeEEEEEcCCceeeEeeccc
Q 001358          816 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      ++++. ++.|.+||..+++.......    ....+..++++| +++++++...      .+.|..++  +++.. .+..+
T Consensus       103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~  177 (326)
T 2ghs_A          103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD  177 (326)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred             EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence            87765 55599999988775433221    123578999999 7877665442      24566666  45543 33334


Q ss_pred             cCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcC--CC-ceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEE
Q 001358          886 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA  960 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~-s~Dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~  960 (1092)
                      ......++|+||++.|..+ +.++.|.+|++.  ++ +......+.......   ..+..+++.++|.+.++. .++.|.
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence            4567889999999876554 457889999986  54 322212222222111   246789999999987775 467899


Q ss_pred             EEEcCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEeCC
Q 001358          961 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD  999 (1092)
Q Consensus       961 lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~s~D  999 (1092)
                      +||. +++.+..+ ..+...+++++|+ +|++.|++++..
T Consensus       255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9998 56665553 3445679999999 898877655544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.17  E-value=7.4e-09  Score=111.98  Aligned_cols=232  Identities=14%  Similarity=0.084  Sum_probs=152.1

Q ss_pred             CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358          394 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      .........+|+|+|+ ++++...++.|..|+.. ++ ..   .+..+...+..++++++|+  ++++...++.|.+||.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECT
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECC
Confidence            3455677899999999 55566677899999984 43 22   3445667789999999998  5666556678999997


Q ss_pred             CCCceeEEEecC----CcceEEEeecccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCc
Q 001358          473 VTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLG  531 (1092)
Q Consensus       473 ~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~  531 (1092)
                      + ++........    ...++.+++.  ++|.++++    |..             .+.|..+|..+++.....  ....
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~  189 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDH  189 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESS
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCC
Confidence            6 6533222111    1235567774  57777776    322             245666666555543332  3345


Q ss_pred             eEEEEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEE--EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          532 CTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                      ...++|+||++.|+.+....  .+.+.|+.|++..+...  ..+...  .......+++.++|+ +.+++.+ .|.+|+.
T Consensus       190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~  265 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS  265 (305)
T ss_dssp             EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT
T ss_pred             CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC
Confidence            67899999999887765421  01257999998765421  111111  124456788999998 4554444 4999998


Q ss_pred             CCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001358          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                       +++.+..+..+.   .+..++|+++++.|.+++.++.
T Consensus       266 -~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          266 -DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             -TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred             -CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence             577777776554   3789999999998988887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.13  E-value=7.8e-08  Score=107.56  Aligned_cols=276  Identities=11%  Similarity=0.039  Sum_probs=172.0

Q ss_pred             EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC
Q 001358          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS  429 (1092)
Q Consensus       350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~  429 (1092)
                      +.+++.++.|..+|..+|+.+-...+....      ..    .......+.+ ....++..+++++.++.|..+|..+|+
T Consensus        56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~------~~----~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           56 VYAADRAGLVKALNADDGKEIWSVSLAEKD------GW----FSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCC---------C----CSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEcCCCeEEEEEccCCceeeeecCcccc------cc----ccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCC
Confidence            556677889999999999877543221000      00    0000122222 122246678888899999999999997


Q ss_pred             CccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce-----EEEeecccCCccEEEE
Q 001358          430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS  504 (1092)
Q Consensus       430 ~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~~l~s  504 (1092)
                      .+-.   .............. ++   .++.++.++.|..+|..+|+.+..........     .....    .+..++.
T Consensus       125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~  193 (376)
T 3q7m_A          125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV  193 (376)
T ss_dssp             EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred             EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence            5532   22222111122222 34   47778889999999999999988776433221     11112    1246788


Q ss_pred             EecCCeEEEEEcCCCCceEEecCCCCc----------eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358          505 ISVDGKIKAWLYDSLGARVDYDAPGLG----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       505 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      ++.++.+..+|..+++...........          +...... .+..++.++.    ++.++.+|..+|+.+..... 
T Consensus       194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~-  267 (376)
T 3q7m_A          194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAY----NGNLTALDLRSGQIMWKREL-  267 (376)
T ss_dssp             CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECT----TSCEEEEETTTCCEEEEECC-
T ss_pred             EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEec----CcEEEEEECCCCcEEeeccC-
Confidence            888999999999988877665432210          0000011 2445555543    45699999999988766543 


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCC
Q 001358          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1092)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~  654 (1092)
                          .....+..  ++..+++++.++.+..+|..+++.+........ ..+.....  .+..+++++.+|.+..+|..++
T Consensus       268 ----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG  338 (376)
T 3q7m_A          268 ----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDG  338 (376)
T ss_dssp             ----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred             ----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence                22333333  467888899999999999999998877752211 11222333  2568888999999999999999


Q ss_pred             Ceeeeccc
Q 001358          655 NSVDAAGV  662 (1092)
Q Consensus       655 ~~~~~~~~  662 (1092)
                      +.+.....
T Consensus       339 ~~~~~~~~  346 (376)
T 3q7m_A          339 RFVAQQKV  346 (376)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEec
Confidence            87765543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=8.7e-08  Score=104.33  Aligned_cols=233  Identities=14%  Similarity=0.109  Sum_probs=151.2

Q ss_pred             EEe--cCCCEEEEEe--CCeEEEEEcCCc----eeeEEec------C-CCCCeEEEEEcCCCCCEEEEEeCC------Ce
Q 001358          809 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM------P-PSPTATSLAFNPHDNNVIAIGMDD------ST  867 (1092)
Q Consensus       809 ~~s--~dg~~l~~~s--dg~i~iwd~~~~----~~~~~~~------~-~~~~i~~l~~s~~d~~~lasg~~d------g~  867 (1092)
                      .++  +++++|++.+  +++|.++|+.+.    +...++.      . ....-..+.++| ++ +++++..+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            346  8899998887  588999999765    6666663      1 112446678899 77 66666555      78


Q ss_pred             EEEEEcCCceeeEeeccccC---CeEEEEEcCCCCEEEEEe-------------------CCCcEEEEEcCCCceeeeee
Q 001358          868 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS  925 (1092)
Q Consensus       868 v~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~s~s-------------------~Dg~i~iwd~~~~~~~~~~~  925 (1092)
                      |.++|..+.+.+.++..-.+   --..+.|+|+++.+++..                   .+.+|.+||+.+++...  .
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence            99999999999999873222   234588899999999874                   36789999999864333  2


Q ss_pred             eecCCCCcCCCCCceEEEE--ecCCCEEEEE-------eCCcEEEEEcCCceeeeee---ccC----------------C
Q 001358          926 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPI----------------S  977 (1092)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~~--s~dg~~la~~-------~d~~v~lwd~~~~~~~~~~---~~~----------------h  977 (1092)
                      +.......    ....+.|  +|+|+++.++       .+++|.+|....++.....   ...                -
T Consensus       244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            33321111    2445655  9999988873       3357777665444211110   000                0


Q ss_pred             CcCEEEEEEecCCCEEEEEeC-CCcEEEEECCC---CceEEeeccccccCCCCc----cCcccceEEEECCCCCCEEEEE
Q 001358          978 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~s~-Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~p~~~~~l~~~ 1049 (1092)
                      ...+..+.+|+||++|.++.. .+.|.++|+..   .+++..+..........|    .....+..++++| |+++|.++
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa  398 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT  398 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence            245788999999999987765 57899999863   355555543321100000    0011466789999 57888888


Q ss_pred             e
Q 001358         1050 L 1050 (1092)
Q Consensus      1050 ~ 1050 (1092)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            7

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.10  E-value=1.6e-08  Score=121.65  Aligned_cols=290  Identities=12%  Similarity=0.057  Sum_probs=180.6

Q ss_pred             EEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCC-cE-EEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001358          350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SV-NRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       350 lasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~-~V-~~l~~spdg~~las~~~d~~i~iwd~~~  427 (1092)
                      +.+++.++.|.-+|..+|+.+-.+....-     ...     ...... .+ ..+++  ++..|++++.|+.|..+|..+
T Consensus        73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~-----~~~-----~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~T  140 (689)
T 1yiq_A           73 MYTTGPFSVVYALDARDGRLIWKYDPQSD-----RHR-----AGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKT  140 (689)
T ss_dssp             EEEECGGGCEEEEETTTCCEEEEECCCCC-----GGG-----GGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             EEEEcCCCeEEEEECCCCceeEEEcCCCC-----ccc-----cccccccCCCCccEE--ECCEEEEEccCCEEEEEECCC
Confidence            55566789999999999998765332100     000     000000 00 01122  467888888999999999999


Q ss_pred             CCCccceEEecccccceeEEEeeC---CCCcEEEEEEe-----CCCcEEEEECCCCceeEEEecCC-c------------
Q 001358          428 GSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHG-A------------  486 (1092)
Q Consensus       428 ~~~~~~~~~l~~h~~~v~~~~~s~---d~~~l~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~~-~------------  486 (1092)
                      |+.+-.... ..+......+..+|   ++.  +++..+     .++.|+.||.++|+.+..+.... .            
T Consensus       141 G~~~W~~~~-~~~~~~~~~~~~sP~v~~g~--v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~  217 (689)
T 1yiq_A          141 GQRAWSVDT-RADHKRSYTITGAPRVVNGK--VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI  217 (689)
T ss_dssp             CCEEEEEEC-CSCTTSCCBCCSCCEEETTE--EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred             CCEeeeecC-cCCCCCCccccCCcEEECCE--EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence            986543211 10111111111122   554  333322     37899999999999998775211 0            


Q ss_pred             ------------------ceEEEeecccCCccEEEEEecCCe-------------------EEEEEcCCCCceEEecCCC
Q 001358          487 ------------------PVYSLCPHAKENIHFIFSISVDGK-------------------IKAWLYDSLGARVDYDAPG  529 (1092)
Q Consensus       487 ------------------~v~~i~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~  529 (1092)
                                        ....+++  +++..+++.++.++.                   |..+|.++++.+..+....
T Consensus       218 ~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~  295 (689)
T 1yiq_A          218 AAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTP  295 (689)
T ss_dssp             HHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred             cccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCC
Confidence                              0012344  334567888887764                   9999999999887665421


Q ss_pred             ---------CceEEEEEecCCC---EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------------
Q 001358          530 ---------LGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------------  576 (1092)
Q Consensus       530 ---------~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------------  576 (1092)
                               .+........+|+   .++.+..    ++.++++|..+|+.+........                     
T Consensus       296 ~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~  371 (689)
T 1yiq_A          296 GDAWDYTATQHMILAELPIDGKPRKVLMQAPK----NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA  371 (689)
T ss_dssp             TCCSCCCCCSCEEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred             cccccccCCCCcEEEeeccCCcEEEEEEEECC----CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence                     1122222334665   5555543    77899999999998744322110                     


Q ss_pred             ---------------cCCceEEEEEcCCCCEEEEEeC-------------------------------------------
Q 001358          577 ---------------QHNSVSVVHFDTAKDQILAAGD-------------------------------------------  598 (1092)
Q Consensus       577 ---------------~~~~v~~~~~~~~~~~l~~~s~-------------------------------------------  598 (1092)
                                     ....-..++++|+...+++...                                           
T Consensus       372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~  451 (689)
T 1yiq_A          372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK  451 (689)
T ss_dssp             TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred             ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence                           0000112688888888877532                                           


Q ss_pred             --CCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccc
Q 001358          599 --DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL  663 (1092)
Q Consensus       599 --dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  663 (1092)
                        +|.|+.||+.+|+.+.....+..   +....+...+.++++++.||.++.||..+++.+..++..
T Consensus       452 ~~~g~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          452 SWSGKLIAWDPVKQQAAWEVPYVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CcceeEEEEECCCCCeEeEccCCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence              37899999999999988876532   334466677889999999999999999999988777644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=8.4e-09  Score=113.17  Aligned_cols=301  Identities=11%  Similarity=0.049  Sum_probs=176.6

Q ss_pred             EEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358          446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      +..+..++.   +..++.++.|..|| .+++.+.....+...+.++..  ..++ .+..++.+  +..+|. +++....+
T Consensus        24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred             CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEE
Confidence            445556665   66677888999999 888887665544444555554  3344 45555544  777775 33333333


Q ss_pred             cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEE
Q 001358          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1092)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iw  605 (1092)
                      ...........+. + ..+..++.    ++.|+.+|.. ++.........   ..+.++...+++. ++.++.++.|..+
T Consensus        94 ~~~~~~~~~~~~~-~-~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~  162 (330)
T 3hxj_A           94 DTKKAIVSDFTIF-E-DILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI  162 (330)
T ss_dssp             CC-----CCEEEE-T-TEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred             ECCCCcccCceEE-C-CEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence            3222222223333 4 44555543    4569999988 77766655433   4455666666665 6778888999999


Q ss_pred             ECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccC
Q 001358          606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  685 (1092)
Q Consensus       606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  685 (1092)
                      |.. ++.........  ..+.++...+++.+.+ ++  +.+..++ .+++.......                       
T Consensus       163 d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~-----------------------  212 (330)
T 3hxj_A          163 NPD-GTEKWRFKTND--AITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA-----------------------  212 (330)
T ss_dssp             CTT-SCEEEEEECSS--CCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred             CCC-CCEeEEEecCC--CceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence            998 87776665442  2356666666666443 33  5566665 33221111000                       


Q ss_pred             CceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecC
Q 001358          686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1092)
Q Consensus       686 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~  765 (1092)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (330)
T 3hxj_A          213 --------------------------------------------------------------------------------  212 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCC
Q 001358          766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT  845 (1092)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~  845 (1092)
                                                         ....+.++++.++|.+.+...++.+..+|. +++.+..+......
T Consensus       213 -----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~  256 (330)
T 3hxj_A          213 -----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI  256 (330)
T ss_dssp             -----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred             -----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence                                               111233444555555554444556666653 34444444433333


Q ss_pred             eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCC
Q 001358          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      +.++.+.+ ++ .|.+++.+|.+..+|. +++.+..+......+.++...++|++. .++.+|.+++...+.
T Consensus       257 ~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          257 ESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE  324 (330)
T ss_dssp             CSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred             cccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence            44556665 45 5667888989999996 677777666556667778887787654 588999998887665

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.05  E-value=4.9e-08  Score=106.25  Aligned_cols=239  Identities=12%  Similarity=0.078  Sum_probs=153.6

Q ss_pred             eec--CCCceEEEEEcCcCcEEEEecCCCC--ceeeeeeeeeecccccceeEEeeecC-CCCcEEEEEECCCCCEEEEEe
Q 001358          341 DFH--PVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       341 ~~s--pdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~~  415 (1092)
                      +++  ++++++++.|..++.|.|+|+.+..  ......++.-+           +... .......+..+||| .++++.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~-----------~~~~~g~s~Ph~~~~~pdG-i~Vs~~  155 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE-----------VKKVSGYSRLHTVHCGPDA-IYISAL  155 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH-----------HHHHHCEEEEEEEEECSSC-EEEEEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhh-----------cccccCCCcccceeECCCe-EEEEcC
Confidence            447  9999989999999999999997552  11111110000           0000 11245668899999 666654


Q ss_pred             CC------CEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEe-------------------CCCcEEE
Q 001358          416 SK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIKV  469 (1092)
Q Consensus       416 ~d------~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~-------------------~d~~i~v  469 (1092)
                      .+      +.|.+.|.++++.+.... ..... .--..+.|+|+++  .+++..                   ...+|.+
T Consensus       156 g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v  232 (462)
T 2ece_A          156 GNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF  232 (462)
T ss_dssp             EETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred             CCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEE
Confidence            44      689999999987665321 11222 2233588899999  677764                   3689999


Q ss_pred             EECCCCceeEEEecC-C-cceEEEeecccCCccEEEEEe------cCCeEEEEEcCCCCce--EE--ecCC---------
Q 001358          470 WDAVTGSRTYSFEGH-G-APVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP---------  528 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~-~-~~v~~i~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~--~~--~~~~---------  528 (1092)
                      ||+.+++.+.++... . .....+.|..++++++++.++      .+++|.+|..+.+.-.  ..  +...         
T Consensus       233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~  312 (462)
T 2ece_A          233 WDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI  312 (462)
T ss_dssp             EETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred             EECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence            999999888888653 1 234456666677888777766      4668877766542110  11  1110         


Q ss_pred             -------CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC---CCeEEEEEeeccc-----------cCCceEEEEEc
Q 001358          529 -------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES---EGAIKRTYQGLQL-----------QHNSVSVVHFD  587 (1092)
Q Consensus       529 -------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~-----------~~~~v~~~~~~  587 (1092)
                             ......+.+|+||++|+++..   +.+.|.++|+.   +.+.+..+.....           -.+....++++
T Consensus       313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS  389 (462)
T 2ece_A          313 LKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS  389 (462)
T ss_dssp             GGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred             ccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence                   234678999999999998764   35679999985   2345544443200           00135788999


Q ss_pred             CCCCEEEEEe
Q 001358          588 TAKDQILAAG  597 (1092)
Q Consensus       588 ~~~~~l~~~s  597 (1092)
                      |||++++++.
T Consensus       390 pDGk~LyVaN  399 (462)
T 2ece_A          390 RDGRRVYVTN  399 (462)
T ss_dssp             TTSSEEEEEC
T ss_pred             CCCCEEEEEc
Confidence            9999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.03  E-value=7.1e-08  Score=108.98  Aligned_cols=346  Identities=11%  Similarity=0.044  Sum_probs=199.4

Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe----------cCCeEEEEEcCCCCceEE
Q 001358          455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVD  524 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~  524 (1092)
                      ++.+.||+..|.++|+-+.+++.++.+......-. .-|-.+.....++..+          .+|.          .  .
T Consensus        15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~--~   81 (595)
T 1fwx_A           15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------R--I   81 (595)
T ss_dssp             EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------S--S
T ss_pred             EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------e--e
Confidence            44688999999999999999999988863221000 0000000000000000          0010          0  0


Q ss_pred             ecCCCCceEEEEE---ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE-c-CCCCEEEEEe--
Q 001358          525 YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG--  597 (1092)
Q Consensus       525 ~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~s--  597 (1092)
                      +......-..+++   .+||++++.+..   .+..|.+.|+.+.++.+.+.-..  ......+++ . |+++++++++  
T Consensus        82 ~~~gd~hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~  156 (595)
T 1fwx_A           82 HDNGDLHHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGED  156 (595)
T ss_dssp             CCCCCBCCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECS
T ss_pred             cccCCCCccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEeccc
Confidence            0000111122333   348999998753   36679999999999888664332  245778887 5 9999999985  


Q ss_pred             ----------------CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358          598 ----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       598 ----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                                      .++.+.+.|.++.+...++...+.   ...++++|+|+++++.+.+...       +..+....
T Consensus       157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~  226 (595)
T 1fwx_A          157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMT  226 (595)
T ss_dssp             CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHT
T ss_pred             ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhcc
Confidence                            345799999999999998886542   4678999999999999876321       00000000


Q ss_pred             cccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEE
Q 001358          662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  741 (1092)
Q Consensus       662 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~  741 (1092)
                      .  .....+.+-....                       ..                                      .
T Consensus       227 ~--~~~d~v~V~~~~~-----------------------~~--------------------------------------~  243 (595)
T 1fwx_A          227 A--AEMDHIVVFNIAE-----------------------IE--------------------------------------K  243 (595)
T ss_dssp             C--CSEEEEEEEEHHH-----------------------HH--------------------------------------H
T ss_pred             c--cccceEEEeeccc-----------------------ee--------------------------------------E
Confidence            0  0000000000000                       00                                      0


Q ss_pred             EecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCc-eeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001358          742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSA  820 (1092)
Q Consensus       742 ~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~  820 (1092)
                      +.++|+....    +.+.+.|....+                    +.. +....     -.....++.++|||++++++
T Consensus       244 ~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~  294 (595)
T 1fwx_A          244 AIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVA  294 (595)
T ss_dssp             HHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEE
T ss_pred             eccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEe
Confidence            0111111111    223333322100                    111 11111     12244578999999999988


Q ss_pred             e--CCeEEEEEcCCce------------eeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------c
Q 001358          821 S--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------S  876 (1092)
Q Consensus       821 s--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~  876 (1092)
                      +  +++|.++|+.+.+            ..... .-......++|+| +|...++..-|+.|.+||+.+          .
T Consensus       295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~  372 (595)
T 1fwx_A          295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD  372 (595)
T ss_dssp             CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred             CCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence            7  5889999998663            22233 2335678999999 776666777899999999987          4


Q ss_pred             eeeEeeccccCCe-----EEEEEcCCCCEEEEEeC---CCc----------EEEEEcCCCceee
Q 001358          877 EVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT  922 (1092)
Q Consensus       877 ~~~~~l~~h~~~V-----~~l~~spdg~~l~s~s~---Dg~----------i~iwd~~~~~~~~  922 (1092)
                      +.+.++..|-.+-     .++.++|||++|+++..   |+.          -.++|+++++...
T Consensus       373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l  436 (595)
T 1fwx_A          373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL  436 (595)
T ss_dssp             CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred             eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence            5677776664432     12355899999998753   542          1889997665433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=1.1e-08  Score=112.36  Aligned_cols=269  Identities=12%  Similarity=0.063  Sum_probs=173.3

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  417 (1092)
                      ....+..+|.  +..|+.++.|..|| .+++.+...                   ..+...+.++...++|.+.+ ++.+
T Consensus        23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~   79 (330)
T 3hxj_A           23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK   79 (330)
T ss_dssp             CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred             cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence            4556667786  45666788999999 888765431                   11234456777777776444 4333


Q ss_pred             CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC
Q 001358          418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  497 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~  497 (1092)
                        |..+|. +++.+..   +...........+. ++   .+..++.++.|..+|.. ++.......+...+.++..  .+
T Consensus        80 --l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~  146 (330)
T 3hxj_A           80 --VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE  146 (330)
T ss_dssp             --EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred             --EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence              888886 5544332   11122223333343 44   47778889999999988 8877777655555555554  33


Q ss_pred             CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecccc
Q 001358          498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  577 (1092)
Q Consensus       498 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  577 (1092)
                      ++ .+..++.++.|..+|.. +.....+......+.++.+.++|...+..       +.|+.+| .+++....+....  
T Consensus       147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~--  214 (330)
T 3hxj_A          147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY--  214 (330)
T ss_dssp             TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred             CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence            44 46678888999999988 66665665555566677777888766554       2399999 7777666555433  


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCee
Q 001358          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                       ..+.++...+++ .+.+++.++.+..+|. +++.+........  .+..+.+.+++ .+.+++.+|.+..++. +++..
T Consensus       215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred             -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence             567777888776 5667777888888874 5666666654432  23455666555 5667888889999985 55555


Q ss_pred             eecc
Q 001358          658 DAAG  661 (1092)
Q Consensus       658 ~~~~  661 (1092)
                      ....
T Consensus       288 ~~~~  291 (330)
T 3hxj_A          288 WNFE  291 (330)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.97  E-value=7.2e-10  Score=123.09  Aligned_cols=192  Identities=8%  Similarity=-0.022  Sum_probs=113.1

Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ++..+++++.|+.|+.||..+|+.+-   .+..  +.+.+..+..++.  ++++++.|+.|+.||.++|+.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            68899999999999999999997654   3333  4566666677777  577778999999999999998877654322


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      .......... ++..+++++.++.+..||..+++....+..+.    ...++|++..+++++.    ++.|+.||..+|+
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~  151 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE  151 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence            1111111111 33578888999999999999988877665443    2345678888888765    6779999999998


Q ss_pred             EEEEEeeccccCCceEEEEEcCCC---CEEEEEeCCCeEEEEECCCCceEEEEeCC
Q 001358          567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~s~dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      .+..+....     .....+.++.   ..+++++.+|.++.||..+|+.+......
T Consensus       152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred             EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            876655322     1122233332   56888999999999999999998877643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.95  E-value=0.00049  Score=86.71  Aligned_cols=609  Identities=9%  Similarity=0.034  Sum_probs=304.6

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC----CCCEEEE
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP----DGSLLGV  413 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp----dg~~las  413 (1092)
                      +++++-.+|  ++..|+..|.=.+|.+.....-....+.+-|            --..-++|..++...    +...|++
T Consensus       330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~  395 (1158)
T 3ei3_A          330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT  395 (1158)
T ss_dssp             SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred             cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence            566666666  5777788777777777643210000000000            111346777777643    1235555


Q ss_pred             Ee---CCCEEEEEEccCCCCccceEEecccccceeEEEeeC---CCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcc
Q 001358          414 AY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1092)
Q Consensus       414 ~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~  487 (1092)
                      ++   .+|.+++..-.-+-.......+.+ ...++.+....   ...  +|+.+..+.+ .|+.+. ++.+..+.. .  
T Consensus       396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~-~--  467 (1158)
T 3ei3_A          396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETEL-M--  467 (1158)
T ss_dssp             EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECC-T--
T ss_pred             EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccc-c--
Confidence            43   457788775432211111112332 23456555432   233  5665555555 455432 223333211 1  


Q ss_pred             eEEEeecccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCC-CceEEEEEecCCCEEEEEecCCCCceeE
Q 001358          488 VYSLCPHAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1092)
Q Consensus       488 v~~i~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1092)
                          .|  ..+...|+++..         ...|++.+.........+..+. ..|...+.+  +.+++.+.     .+.+
T Consensus       468 ----gf--~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-----g~~l  534 (1158)
T 3ei3_A          468 ----GF--VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-----GRAL  534 (1158)
T ss_dssp             ----TC--CSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-----TTEE
T ss_pred             ----cc--cCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-----CCEE
Confidence                11  112223333321         2235566655444454555443 356555544  34555553     1236


Q ss_pred             EEEeCCCCeEEEEEeeccccCCceEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      ..+++..+++... .... -...|.|+++.|.      +.++++|.. |++++|+++.+.+.+........ ....++.+
T Consensus       535 ~~fel~~~~L~~~-~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l  611 (1158)
T 3ei3_A          535 YYLQIHPQELRQI-SHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILM  611 (1158)
T ss_dssp             EEEEEETTEEEEE-EEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEE
T ss_pred             EEEEeeCCceeee-cccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEE
Confidence            6677666654332 2111 1367999998864      368888886 99999999998777765554321 12334433


Q ss_pred             c--cCCCEEEEEeCCCeEEEEECC--CCCeeeec--ccccccceeeeecC----------CcccccccccCC--------
Q 001358          631 N--KNGTLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNP----------ISTVTGAGIANG--------  686 (1092)
Q Consensus       631 s--~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~--~~~~~~v~~~~~~~----------~~~~~~~~~~~~--------  686 (1092)
                      .  ....+|.+|-.||.+.-+.+.  ++......  .-...++.-..+..          ..+.+.... .+        
T Consensus       612 ~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~-~~~l~~s~l~  690 (1158)
T 3ei3_A          612 TTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS-NHKLVFSNVN  690 (1158)
T ss_dssp             EEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEES-SSSEEEEEBS
T ss_pred             EEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEc-CCceEEeccC
Confidence            3  234678899999998666544  33222110  00011111111110          111110000 11        


Q ss_pred             ------ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEE
Q 001358          687 ------SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  760 (1092)
Q Consensus       687 ------~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~l  760 (1092)
                            ...|+....|+|  ++ +..++.+++..++.........+.     -...+..++++|+.+.++.+..+...  
T Consensus       691 ~~~v~~~~~F~se~~~~g--~v-~~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~--  760 (1158)
T 3ei3_A          691 LKEVNYMCPLNSDGYPDS--LA-LANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVLSSRIEV--  760 (1158)
T ss_dssp             SSCCCEEEEECCSSSTTE--EE-EECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEE--
T ss_pred             hHHhceEeccCcccCCCc--EE-EEcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEEEEeccc--
Confidence                  112222212222  22 223355777776532221112111     23577899999998877666543211  


Q ss_pred             eeecCC-----------------------------ccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEE--
Q 001358          761 WRWPRN-----------------------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA--  809 (1092)
Q Consensus       761 w~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~--  809 (1092)
                      ++....                             ....-+.......+++.|+.+...+...++..   ...+.+++  
T Consensus       761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v  837 (1158)
T 3ei3_A          761 QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSC  837 (1158)
T ss_dssp             ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEE
T ss_pred             cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEE
Confidence            111000                             00000111223457788888888777777653   34444444  


Q ss_pred             -EecC-CCEEEEEe-----------CCeEEEEEcCCceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001358          810 -LSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1092)
Q Consensus       810 -~s~d-g~~l~~~s-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1092)
                       |..+ ..++++|.           .|.|.+|++..++...... ...+.+++++--  +|++|| |- ..+|++|++..
T Consensus       838 ~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~  913 (1158)
T 3ei3_A          838 KLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTT  913 (1158)
T ss_dssp             CCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECT
T ss_pred             EEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCC
Confidence             4333 46888774           2569999987544322211 235678887754  454444 43 47899999986


Q ss_pred             ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe
Q 001358          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1092)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~  955 (1092)
                      .+.+..-..+-..|..+.....+++++.|..-..|.+...+..+... ..+..-.. .   .+++++.|-.++.++++-.
T Consensus       914 ~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~D~~-~---~~vta~~~ld~~t~l~aD~  988 (1158)
T 3ei3_A          914 EKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIARDFN-P---NWMSAVEILDDDNFLGAEN  988 (1158)
T ss_dssp             TSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEECCS-C---BCEEEEEEEETTEEEEEET
T ss_pred             CceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEeecc-c---ccEEEEEEEccCcEEEEcC
Confidence            65433111122223333333357899999888888887665432111 12221111 1   3689999988876666557


Q ss_pred             CCcEEEEEcCCc-------eeeeeeccCC-CcCEEEEEE---ecC---------CCEEEEEeCCCcEEEEEC
Q 001358          956 ETHLAIYEAEEL-------TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       956 d~~v~lwd~~~~-------~~~~~~~~~h-~~~v~~l~f---s~d---------g~~l~t~s~Dg~i~vwd~ 1007 (1092)
                      ++.+.++.....       +.+.....-| ...|+++.-   .+.         ...++.++.+|+|.+.-.
T Consensus       989 ~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A          989 AFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             TSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             CCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence            788888876531       2222111112 556777652   222         234677888898887643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.91  E-value=4.7e-10  Score=124.57  Aligned_cols=190  Identities=9%  Similarity=0.056  Sum_probs=109.0

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcC
Q 001358          855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT  934 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~  934 (1092)
                      ++..|++++.||.|+.||..+|+.+.++..  +.+.+..+.+++..+++++.||.|+.||..+++.............. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~-   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ-   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence            456889999999999999999999988876  55666666778888888889999999999887643211111100000 


Q ss_pred             CCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001358          935 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus       935 ~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~ 1013 (1092)
                           .+..++.++ .+++ +.++.++.||..+|+.+..+.. +.    ...++|++..|++++.|+.|+.||..+|+.+
T Consensus        85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence                 011112344 4444 6789999999999998766432 22    2456778889999999999999999999987


Q ss_pred             EeeccccccCCCCccCcccceEEEECCC--CCCEEEEEeCCCcEEEEecCCCCCccccC
Q 001358         1014 CRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1070 (1092)
Q Consensus      1014 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1070 (1092)
                      .++....+..            .+++++  ....+++++.||.|+.||....+..|...
T Consensus       154 W~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          154 WNATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CEEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EeEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            7765322111            111210  01567888999999999998888888764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.89  E-value=0.00041  Score=81.78  Aligned_cols=535  Identities=9%  Similarity=-0.005  Sum_probs=276.3

Q ss_pred             eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEcc
Q 001358          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~  426 (1092)
                      +|+.+  ....|+..++++........                 + ..-..+..++|.+++..|..+ ..++.|..+++.
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~   67 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN   67 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence            34444  34678999988765332111                 1 123468899999977666655 456889999987


Q ss_pred             CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEE-
Q 001358          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-  505 (1092)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-  505 (1092)
                      +... ..  .+.........+++.+.+.. ++++-...+.|.+.+++.......+...-.....+++.|. +|.++++- 
T Consensus        68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~  142 (628)
T 4a0p_A           68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW  142 (628)
T ss_dssp             SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence            6432 21  22222245678999877664 4556666788999997655432223233445678888654 33444443 


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                      +..+.|...+++......... .......+++++++..|+.+-.   +.+.|...|+..... ..+....   .....++
T Consensus       143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla  214 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT  214 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred             CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence            235678888877655444433 4456789999999888887753   356799999876544 3343322   3456777


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE-EEccCCCEEEEEeCCCeEEEEECCCCCeeeeccccc
Q 001358          586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS  664 (1092)
Q Consensus       586 ~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  664 (1092)
                      +.. +..+++-...+.|...|..+++....+.....  ....+ .+++..+.   + .           ..+    ....
T Consensus       215 v~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~-----------n~C----~~~n  272 (628)
T 4a0p_A          215 QYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-W-----------NEC----ASSN  272 (628)
T ss_dssp             EET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-C-----------CTT----TTTG
T ss_pred             EEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-c-----------eEe----ccCC
Confidence            764 33334444678899999888776666543211  12233 22221110   0 0           000    0000


Q ss_pred             ccceeeeec-CCcccccccccCCceeecCCC-CCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEE
Q 001358          665 DNLRKLSVN-PISTVTGAGIANGSVSVNEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1092)
Q Consensus       665 ~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  742 (1092)
                      .....+.+. |.+.....++......-++.. .+....++.+. ...|+-..++....   ....++. .....+.+++|
T Consensus       273 g~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~  347 (628)
T 4a0p_A          273 GHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY  347 (628)
T ss_dssp             GGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred             CCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence            000001110 000000000000000000000 01112222222 23343333321110   0111111 12345778999


Q ss_pred             ecCCcEEEEeec-CCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe
Q 001358          743 NNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS  821 (1092)
Q Consensus       743 s~~g~~l~~~~~-dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s  821 (1092)
                      .+....|+.+.. .+.|..++......           ..         +.............+..+++...++.|..+.
T Consensus       348 d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td  407 (628)
T 4a0p_A          348 DPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC  407 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEEc
Confidence            887666655543 45665554322100           00         0000000000234578999999877776665


Q ss_pred             --CCeEEEEEcCCceeeEEe-cCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeeEeeccccCCeEEEEEcC
Q 001358          822 --GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSD  896 (1092)
Q Consensus       822 --dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~sp  896 (1092)
                        .+.|.+.++. |+....+ ........++++.|..+.++.+-....  .|...+++...........-.....|++.+
T Consensus       408 ~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~  486 (628)
T 4a0p_A          408 EATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS  486 (628)
T ss_dssp             TTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred             CCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence              4789999986 4444343 334467899999995555555543333  566666663332222232344578999999


Q ss_pred             CCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEEEcCCceeeee
Q 001358          897 ALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ  972 (1092)
Q Consensus       897 dg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~  972 (1092)
                      +++.|..+. ..+.|...+++.....   .+..  ...   ....++++.. +.+..+ ...+.|...|..+|+....
T Consensus       487 ~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~  555 (628)
T 4a0p_A          487 RLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK  555 (628)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred             CCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence            876666554 4578999998764321   2211  111   1345676654 333333 2445677777666654433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.86  E-value=6e-06  Score=86.90  Aligned_cols=224  Identities=12%  Similarity=0.043  Sum_probs=143.9

Q ss_pred             CcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC
Q 001358          397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~  475 (1092)
                      ..+..++|++++..|..+. ..+.|..++..++....   .+.........+++.+++.. ++++....+.|.+++++..
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence            4578899999777666654 56789999998754221   22222246789999998664 4556666789999997654


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      ...............+++.+. ++.++++...  .+.|..++++.................+++++++..|+.+..   +
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~  187 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G  187 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred             CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence            322222222245677888543 2334444333  468888888754433333233346788999999888877653   2


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      .+.|..+|.........+.+.    .....++..  +..++.+. ..+.|.++|..+++.+..+.... ......+++.|
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~  260 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL  260 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred             CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence            567999998765544443321    234566654  45565554 56899999999999988886432 12357888888


Q ss_pred             CCC
Q 001358          633 NGT  635 (1092)
Q Consensus       633 ~~~  635 (1092)
                      ++.
T Consensus       261 ~~~  263 (267)
T 1npe_A          261 SQC  263 (267)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.86  E-value=1.2e-06  Score=105.03  Aligned_cols=375  Identities=13%  Similarity=0.134  Sum_probs=206.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcce-----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      .++.++.++.|..+|..+|+.+.++.......           ..+++    .+..++.++.|+.|..+|..+++.+...
T Consensus        68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            46667778999999999999998875432211           11122    2357888899999999999999988766


Q ss_pred             cCCC----CceEEEEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccc--c--------------------
Q 001358          526 DAPG----LGCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL--Q--------------------  577 (1092)
Q Consensus       526 ~~~~----~~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~--~--------------------  577 (1092)
                      ....    ..+.+.-.-.++ .++++....  ..++.|+.+|..+|+.+-.+.....  .                    
T Consensus       144 ~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             ccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            5421    111110011144 444443221  1257899999999999887753210  0                    


Q ss_pred             ------CCceEEEEEcCCCCEEEEEeCCCe-------------------EEEEECCCCceEEEEeCCCCC-------CCC
Q 001358          578 ------HNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PEN  625 (1092)
Q Consensus       578 ------~~~v~~~~~~~~~~~l~~~s~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~v  625 (1092)
                            ......+++.|+...++.++.++.                   |..+|..+|+.+.......+.       ...
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~  302 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI  302 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc
Confidence                  011124678888889988887763                   999999999999888753221       111


Q ss_pred             ceEEEccCCC---EEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccce
Q 001358          626 PRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1092)
Q Consensus       626 ~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1092)
                      ....+..+|+   .+++++.+|.++++|..+++.+......... +...+.+         ..+..........+++.  
T Consensus       303 ~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~--  370 (668)
T 1kv9_A          303 TLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP--  370 (668)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC--
T ss_pred             EEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe--
Confidence            1122234665   6888999999999999999887654322210 0001110         00000000000000000  


Q ss_pred             eeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCcc
Q 001358          703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1092)
Q Consensus       703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~  782 (1092)
                                            .+..|.......-..++++|+...++....+-...+... .               ..
T Consensus       371 ----------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~-~---------------~~  412 (668)
T 1kv9_A          371 ----------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE-G---------------KD  412 (668)
T ss_dssp             ----------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC-G---------------GG
T ss_pred             ----------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEeeee-c---------------cc
Confidence                                  000111000111123578888776666555422221110 0               00


Q ss_pred             ccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEE-EEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEE
Q 001358          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       783 ~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~-~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1092)
                      |....+.  .        ....     +  .+..++ ... +|.|..||..+++.+.+...+.. .....+.. .+.+++
T Consensus       413 ~~~~~~~--~--------~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~vf  473 (668)
T 1kv9_A          413 FVTRKAF--N--------TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVF  473 (668)
T ss_dssp             CCCCSSC--C--------CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEE
T ss_pred             ccccccc--c--------cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEe-CCCEEE
Confidence            1100000  0        0000     0  011111 122 47899999999998877654332 22223333 466888


Q ss_pred             EEeCCCeEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-EEEEEe
Q 001358          861 IGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG  905 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~s~s  905 (1092)
                      +|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus       474 ~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          474 QGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            89999999999999999998887543211 1234445676 444443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.86  E-value=1e-07  Score=107.77  Aligned_cols=235  Identities=9%  Similarity=0.016  Sum_probs=159.3

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEE-c-CCCCCEEEEEe------------------CCCeE
Q 001358          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI  868 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~------------------~dg~v  868 (1092)
                      +||+++.+..  +++|.+.|+.+.++...+.-. ......+++ + | ++.++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            4899998876  477999999999988855433 246788888 5 8 888888884                  34589


Q ss_pred             EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 001358          869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI  910 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--------------------------------------~i  910 (1092)
                      .++|.++.+.+.++.--. ....++++|||+++++.+.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999999888876322 356788999999999988653                                      35


Q ss_pred             EEEEcCC--CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCce------------eeeeec
Q 001358          911 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF  974 (1092)
Q Consensus       911 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~------------~~~~~~  974 (1092)
                      .|.|..+  ++.. ...+....       ...++.++|||++++++  .+++|.++|+.+.+            ......
T Consensus       257 ~VID~~~~~~~~~-~~~Ipvg~-------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          257 KVVDGRKEASSLF-TRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             EEEECSGGGCCSS-EEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             EEEeCcccCCcee-EEEEecCC-------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence            5666655  2110 11222211       35679999999999885  56789999999663            222222


Q ss_pred             cCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC----------CceEEeeccccccCCCCccCcccceEEEECCCCCC
Q 001358          975 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1044 (1092)
Q Consensus       975 ~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1044 (1092)
                        -......++|++||...++..-|+.|.+||+.+          ...+.++... +.|.+    .-.++..+.+| |++
T Consensus       329 --vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpGh----~~~~~g~t~~~-DGk  400 (595)
T 1fwx_A          329 --LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGH----LKTVMGETLDA-TND  400 (595)
T ss_dssp             --CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEE----EEETTTTSTTC-CSS
T ss_pred             --CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccccc----ceeccceEeCC-CCC
Confidence              246788999999995555677899999999987          4455555421 11111    11123344677 578


Q ss_pred             EEEEEeCCC--cE-----------EEEecCCCC
Q 001358         1045 QFAVGLTNG--EV-----------YVIEPNEPG 1064 (1092)
Q Consensus      1045 ~l~~~~~dg--~v-----------~~w~~~~~~ 1064 (1092)
                      +|+++..-.  ++           .++|++..+
T Consensus       401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            887776532  23           788884333

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.84  E-value=9.4e-06  Score=85.38  Aligned_cols=257  Identities=11%  Similarity=0.011  Sum_probs=156.1

Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCcc--ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      |.+|..+.. +.|+.+++.+.....  ....+......+..++|++++.. ++++....+.|.+++...+.....+....
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            345655543 468889987654211  01112222345789999997764 55566667899999987665433333333


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+.... ..+.|+.++....
T Consensus        79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~  156 (267)
T 1npe_A           79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (267)
T ss_dssp             CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence            45678888543 334556666678999999876544333333334678999999877766654321 1356888887543


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      . ...+....  ......+++++++..|+.+. ..+.|.++|.........+...   .....++.. ++.++++...++
T Consensus       157 ~-~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~lyva~~~~~  229 (267)
T 1npe_A          157 N-RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKNLYYTDWKTN  229 (267)
T ss_dssp             C-CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTEEEEEETTTT
T ss_pred             C-cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCEEEEEECCCC
Confidence            2 23332111  24678899999887776654 5689999999765544444321   123456654 344444444568


Q ss_pred             eEEEEECCCCCeeeeccccc-ccceeeeecCC
Q 001358          645 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI  675 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~  675 (1092)
                      .|..++..+++.+..+.... .....+++.|.
T Consensus       230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            99999999887776665332 23445555544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.84  E-value=0.0012  Score=83.27  Aligned_cols=572  Identities=10%  Similarity=0.091  Sum_probs=280.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEEccCCCC-----ccceEEecccccceeEEEeeCCC---CcEEEEEEe---CCCcE
Q 001358          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITCG---DDKTI  467 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s~d~---~~l~l~s~~---~d~~i  467 (1092)
                      ..++++-.+| +|..|+..|.=.+|.+.....     +....++ ..-++|.+++.....   .. .+++++   .+|.+
T Consensus       329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL  405 (1158)
T 3ei3_A          329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL  405 (1158)
T ss_dssp             CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred             ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence            3567776555 788888877767777664321     1222233 244688888875421   21 244332   56788


Q ss_pred             EEEECCCC-ceeEEEec-CCcceEEEeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEec-CC
Q 001358          468 KVWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSA-NG  541 (1092)
Q Consensus       468 ~vwd~~~~-~~~~~~~~-~~~~v~~i~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~~~~s~-dg  541 (1092)
                      ++..-.-+ +.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+.. +........+  .....++... .+
T Consensus       406 ~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~-e~veev~~~gf~~~~~TL~~~~l~~  483 (1158)
T 3ei3_A          406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNG-EEVEETELMGFVDDQQTFFCGNVAH  483 (1158)
T ss_dssp             EEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEET-TEEEEECCTTCCSSSCEEEEEEETT
T ss_pred             EEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeC-CcccccccccccCCCCcEEEEEcCC
Confidence            88742211 11122210 112344443211 123457777766666 4554422 1222221111  1111111111 12


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE--EEeCC
Q 001358          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG  619 (1092)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~--~~~~~  619 (1092)
                      ..++=...     ..|++.+...+..+..+....  ...|...+.+.  .+++.++ ++.+.++.+..+++..  .....
T Consensus       484 ~~ivQVt~-----~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~  553 (1158)
T 3ei3_A          484 QQLIQITS-----ASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEME  553 (1158)
T ss_dssp             TEEEEEES-----SCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECS
T ss_pred             CeEEEEec-----CEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCC
Confidence            24443332     227777766555555554433  24566666553  4666665 6788888877654332  22222


Q ss_pred             CCCCCCceEEEccC------CCEEEEEeC-CCeEEEEECCCCCeeeeccccc-ccceeeeecCCcccccccccCCceeec
Q 001358          620 GGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                         ..|.|+++.|.      +.++++|.. |++++|+++++.+.+....-.. ....++.+.               .+ 
T Consensus       554 ---~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~~-  614 (1158)
T 3ei3_A          554 ---HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------TF-  614 (1158)
T ss_dssp             ---SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------EE-
T ss_pred             ---CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------Ee-
Confidence               35888888763      479999996 9999999998755443221111 111112111               11 


Q ss_pred             CCCCCCcccceeeccccccceeceeecc--CccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccc
Q 001358          692 EDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  769 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~  769 (1092)
                          ....++..|-.||.+..+.++...  ........+    ...++.-..+...|..-+.+.++.-..+|.-+     
T Consensus       615 ----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-----  681 (1158)
T 3ei3_A          615 ----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-----  681 (1158)
T ss_dssp             ----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESS-----
T ss_pred             ----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcC-----
Confidence                123455666666665544433211  111111111    11233333333333322222223222222211     


Q ss_pred             cCcccccccCCccccCCCCCceeeecCCCCCCCCCee-EEEEecC--CCEEEEEeCCeEEEEEcCCce--eeEEecCCCC
Q 001358          770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP-CFALSKN--DAYLFSASGGVISLYIVMTFK--TILTIMPPSP  844 (1092)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~-~~~~s~d--g~~l~~~sdg~i~iwd~~~~~--~~~~~~~~~~  844 (1092)
                                        +. +....+    ....+. ...|+..  ..-++..+++.++|..+.+..  .++++. -..
T Consensus       682 ------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~  737 (1158)
T 3ei3_A          682 ------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LYE  737 (1158)
T ss_dssp             ------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CSS
T ss_pred             ------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CCC
Confidence                              00 111111    111222 2234332  234555556668887775432  222222 234


Q ss_pred             CeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CeEEEEEcCC
Q 001358          845 TATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNARS  875 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~v~iwd~~~  875 (1092)
                      .+..++++| ..+.++++..+                                                 +.|++.|..+
T Consensus       738 Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t  816 (1158)
T 3ei3_A          738 SPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT  816 (1158)
T ss_dssp             EEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTT
T ss_pred             CceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCC
Confidence            677788887 55544433211                                                 2467777777


Q ss_pred             ceeeEeecc-ccCCeEEEE---EcCC-CCEEEEEe----------CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358          876 SEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       876 ~~~~~~l~~-h~~~V~~l~---~spd-g~~l~s~s----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      .+.+..++- ....+.+++   |..+ ..+++.|.          ..|.|.++++..++..   .+...+-    .+.+.
T Consensus       817 ~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~---lv~~~~v----~g~v~  889 (1158)
T 3ei3_A          817 FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ---TVAEKEV----KGAVY  889 (1158)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE---EEEEEEE----SSCEE
T ss_pred             CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE---EEEEEEc----CCcCE
Confidence            766655432 222344444   4333 46888775          3478999999854322   2221111    13566


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceEEeecc
Q 001358          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILS 1018 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~--~~~~~~~~~~ 1018 (1092)
                      +++-- +| +|+++-..+|++|++...+.++. ...+-..|..+.....|.+++.|..-.+|.+....  .+++.-..  
T Consensus       890 al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a--  964 (1158)
T 3ei3_A          890 SMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA--  964 (1158)
T ss_dssp             EEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE--
T ss_pred             EEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE--
Confidence            76533 23 67777789999999986654431 11111123333333457788888877777765543  33332111  


Q ss_pred             ccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001358         1019 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1019 ~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      ..+.       +.+..++.+-  |...++.+..+|.+.+...+..
T Consensus       965 ~D~~-------~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          965 RDFN-------PNWMSAVEIL--DDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             ECCS-------CBCEEEEEEE--ETTEEEEEETTSEEEEEEECTT
T ss_pred             eecc-------cccEEEEEEE--ccCcEEEEcCCCcEEEEecCCC
Confidence            1222       2334445543  2368999999999999998753

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.82  E-value=2.6e-06  Score=102.16  Aligned_cols=168  Identities=12%  Similarity=0.156  Sum_probs=114.7

Q ss_pred             EEEEcCCCCCEEEEEeCCCe-------------------EEEEEcCCceeeEeecc--cc-------CCeEEEEEcCCCC
Q 001358          848 SLAFNPHDNNVIAIGMDDST-------------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN  899 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~  899 (1092)
                      .++++| +..+++.++.++.                   |..+|..+|+.+..++.  |.       .+.....+..+|+
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            478888 6778888887764                   99999999999887764  32       2333333334675


Q ss_pred             ---EEEEEeCCCcEEEEEcCCCceeeeeeeec---------CCCCc--------C------CC-----CCceEEEEecCC
Q 001358          900 ---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQ  948 (1092)
Q Consensus       900 ---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---------~~~~~--------~------~~-----~~v~~l~~s~dg  948 (1092)
                         .++.++.+|.+.++|..+++.........         ..+..        .      ..     ..-..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               68889999999999999988652111100         00000        0      00     001237889988


Q ss_pred             CEEEEE-------------------------------------eCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC
Q 001358          949 TRFLLV-------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR  991 (1092)
Q Consensus       949 ~~la~~-------------------------------------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~  991 (1092)
                      .++.+.                                     .++.|.-||..+|+.+-....  ..++....+...|.
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg  470 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGN  470 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTT
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCC
Confidence            776651                                     126799999999998765432  23344445566788


Q ss_pred             EEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          992 MVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       992 ~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      ++++++.||.++.||..+|+.+.++..
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCcccchhhhhhcChhheEecC
Confidence            999999999999999999999988874

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.80  E-value=5.7e-06  Score=96.64  Aligned_cols=167  Identities=14%  Similarity=0.176  Sum_probs=106.9

Q ss_pred             EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCceeeEeecc--cc--------CCeEEEEEc-CCC--
Q 001358          848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL--  898 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pdg--  898 (1092)
                      .+++.+ ...+++.+..+                +.|.-+|.++|+.+..++.  |.        .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            356667 55677777665                3899999999999877764  21        1222 2222 567  


Q ss_pred             -CEEEEEeCCCcEEEEEcCCCceeeeeeeec----------CCCCc----------CC-----------CCCceEEEEec
Q 001358          899 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVM----------TL-----------APSETHIQFHK  946 (1092)
Q Consensus       899 -~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~----------~~~~~----------~~-----------~~~v~~l~~s~  946 (1092)
                       +.++.++.+|.+.+.|..+++..-......          ..+..          ..           ...-..++++|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             567788999999999999987654322110          00000          00           00113567888


Q ss_pred             CCCEEEEE----------------------------------------eCCcEEEEEcCCceeeeeeccCCCcCEEEEEE
Q 001358          947 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF  986 (1092)
Q Consensus       947 dg~~la~~----------------------------------------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~f  986 (1092)
                      +..++.+.                                        ..+.|.-||+.+++.+-+...+  .++..-.+
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~  480 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM  480 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence            87766541                                        1256888888888877654322  22222223


Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       987 s~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      ...|.+++.++.||.++.||..+|+.+.++..
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            44667888899999999999999999988863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.75  E-value=1.3e-06  Score=89.57  Aligned_cols=200  Identities=12%  Similarity=0.065  Sum_probs=138.5

Q ss_pred             CeeEEEEecCCCEEEEEe---CCeEEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee
Q 001358          804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      ....++|++|+.++++.+   ++.|+++|+.+++.+..+.-.. .....+++.  ++++.++...++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            457899999876555554   3789999999999988875322 233456665  3455566667899999999999999


Q ss_pred             EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCc
Q 001358          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  958 (1092)
Q Consensus       880 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~  958 (1092)
                      .++..-...  ...+++||+.|+.+..++.|.++|..+.+......+.......   ..+..+.|. +|...+.. .++.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~---~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV---IRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc---ccceeEEEE-CCEEEEecCCCCe
Confidence            888632121  2446678888877777889999999886654432222211111   135678888 77555444 5689


Q ss_pred             EEEEEcCCceeeeeeccCC------------CcCEEEEEEecCCCE-EEEEeCCCcEEEEECCCCc
Q 001358          959 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRM-VFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       959 v~lwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~-l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                      |.+.|..+++.+..+..+.            ......++|+|+++. ++++...+.+.+-++....
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            9999999999887764320            135689999999865 4555577888888877653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.74  E-value=0.0013  Score=77.58  Aligned_cols=502  Identities=9%  Similarity=-0.046  Sum_probs=253.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358          395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      .-..+..++|++.+..|..+. ..+.|..+++++.....  ..+.........+++.+.+.. ++++-...+.|.+.+++
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d  114 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD  114 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC
Confidence            345678999999777776664 46789999987653211  122222346789999997664 55566677899999976


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      .......+...-.....+++.+. ++.++++- +..+.|...+++.................+++++++..|+.+-.   
T Consensus       115 G~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---  190 (619)
T 3s94_A          115 GSLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---  190 (619)
T ss_dssp             SCSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---
T ss_pred             CCCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---
Confidence            54433333234445667787554 23344443 22456777777655444444444556789999998888887743   


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      ....|...|...........+..   .....+++..+  .++.+ ...+.|...|..+++....+....  .....+++.
T Consensus       191 ~~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~  263 (619)
T 3s94_A          191 KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAF  263 (619)
T ss_dssp             TTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEEC
T ss_pred             CCCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEE
Confidence            25679999987654433333222   22345666654  44444 467788899988887665554321  112333332


Q ss_pred             -cCCCEEEEEeCCCeEEEEECCCCC--eeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358          632 -KNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       632 -~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                       |..+--  +.....     ..++.  .+.........-.  ..+|.+-.+......   ..    .....+++.+ ..+
T Consensus       264 ~~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~~--C~C~~g~~l~~d~~~---C~----~~~~~~Ll~~-~~~  326 (619)
T 3s94_A          264 SQQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFYQ--CACPTGVKLLENGKT---CK----DGATELLLLA-RRT  326 (619)
T ss_dssp             CGGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSEE--EECCTTCCBCTTSSC---BC----SSCSEEEEEE-ESS
T ss_pred             ccccCCC--cccccc-----CCCCcccceEECCCCCCCce--EeCCchheecccCcc---cC----CCCceEEEEE-ccc
Confidence             211000  000000     00000  0000000000000  111111111000000   00    0011223322 234


Q ss_pred             ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEee-cCCeeEEeeecCCccccCcccccccCCccccCCC
Q 001358          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1092)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1092)
                      .|+..+++.....   .+.++. .....+.+++|.+.+..|+.+. ..+.|..++.....                    
T Consensus       327 ~i~~i~l~~~~~~---~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------------------  382 (619)
T 3s94_A          327 DLRRISLDTPDFT---DIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------------------  382 (619)
T ss_dssp             CEEEEESSSTTCC---CEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--------------------
T ss_pred             ceEEEecCCCccc---eeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc--------------------
Confidence            5555554432211   111121 1234567899998655555444 45666665543210                    


Q ss_pred             CCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC-
Q 001358          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-  864 (1092)
Q Consensus       788 ~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-  864 (1092)
                       . .....    ..-.....+++...+..|..+.  .+.|.+.++........+...-.....+++.|..|.+..+-.. 
T Consensus       383 -~-~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~  456 (619)
T 3s94_A          383 -S-QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE  456 (619)
T ss_dssp             -C-EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS
T ss_pred             -c-EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC
Confidence             0 00000    0223456899987666666665  4789999987543322233344678999999944544444322 


Q ss_pred             CCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEE
Q 001358          865 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       865 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1092)
                      .+.|...+++...........-.....|++.++++.|..+. ..+.|...+++......  .+.....      ...+++
T Consensus       457 ~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~gla  528 (619)
T 3s94_A          457 IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFT  528 (619)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEE
T ss_pred             CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEE
Confidence            35777777664332222233345678999998766666554 45678888887643221  2221111      133555


Q ss_pred             EecCCCEEEEE--eCCcEEEEEcCCc
Q 001358          944 FHKDQTRFLLV--HETHLAIYEAEEL  967 (1092)
Q Consensus       944 ~s~dg~~la~~--~d~~v~lwd~~~~  967 (1092)
                      +..+  .|..+  ..+.|...|..++
T Consensus       529 v~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          529 LLGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EETT--EEEEECTTSSCEEEEESSSC
T ss_pred             EECC--EEEEeecCCCeEEEEEcCCC
Confidence            5433  44443  3445666666555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.70  E-value=2.7e-05  Score=91.19  Aligned_cols=378  Identities=11%  Similarity=-0.007  Sum_probs=203.6

Q ss_pred             EEEEEeC-CCcEEEEEC-CCCceeEEEecCCcc-e----------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001358          457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-V----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV  523 (1092)
Q Consensus       457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-v----------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~  523 (1092)
                      .++.++. ++.|..+|. .+|+.+.++...... +          ..+++    ++..++.++.|+.+..+|..+++.+.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            3566666 889999999 899998877533210 0          11122    23578888899999999999998887


Q ss_pred             EecCCCC----ceEE-EEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc-------------------
Q 001358          524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------  577 (1092)
Q Consensus       524 ~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------  577 (1092)
                      .......    .+.+ ... .++ .++++....  ..++.|+.+|..+|+.+-.+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            6554321    1111 111 244 444443211  11567999999999998776643200                   


Q ss_pred             ---------------CC-ceEEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCceEEEEeCCCCC---
Q 001358          578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL---  622 (1092)
Q Consensus       578 ---------------~~-~v~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~---  622 (1092)
                                     .. ....+++.++...++.++.+                +.|..+|..+|+.+...+...+.   
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                           00 00235667777777776642                35999999999999888654221   


Q ss_pred             ----CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCC
Q 001358          623 ----PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1092)
Q Consensus       623 ----~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1092)
                          .....+....+|+   .++.++.+|.+.++|..+++.+.........-....+.+                     
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~---------------------  356 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL---------------------  356 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence                1111122224674   677888899999999999987765432110000000000                     


Q ss_pred             CCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccc
Q 001358          696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  775 (1092)
Q Consensus       696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~  775 (1092)
                      ..++.+......         . .+.....+..|.......-..++++|+...+++...+....++..+..         
T Consensus       357 ~~g~p~~~~~~~---------~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~---------  417 (571)
T 2ad6_A          357 KTGTPVRDPEFA---------T-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP---------  417 (571)
T ss_dssp             TTCSEEECGGGC---------C-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred             cCCceecccccC---------C-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence            000000000000         0 000000001111001111134678998888888877644444332110         


Q ss_pred             cccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCC
Q 001358          776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD  855 (1092)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d  855 (1092)
                               ...+..          .-.....+..+|.+.  ....++.+..||..+++.+.++.... .+....+.. .
T Consensus       418 ---------~~~g~~----------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~  474 (571)
T 2ad6_A          418 ---------YRAGQF----------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K  474 (571)
T ss_dssp             ---------CCTTSC----------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred             ---------cccCCc----------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence                     000100          000011122233321  00124789999999998877765322 222222232 3


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeeEeeccccCC-eEEEEEcCCCCEEEE
Q 001358          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  903 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s  903 (1092)
                      +.++++++.||.|+.||..+|+.+.++...... -.-+.+..+|+.++.
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            457777999999999999999999888743221 112345567765553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.69  E-value=3.3e-06  Score=86.63  Aligned_cols=216  Identities=9%  Similarity=-0.007  Sum_probs=143.9

Q ss_pred             ceeeEEecCCCC--CeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeeEeecccc-CCeEEEEEcCCCCEE-EEEeC
Q 001358          833 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG  906 (1092)
Q Consensus       833 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l-~s~s~  906 (1092)
                      .+.+.++. |..  ....++|++ ++.+.++.+.  ++.|.++|+.+++.+..+.-.. .-...+++.  ++.| ++.-.
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            34555664 443  358999999 6655554443  5799999999999988865211 122345554  4444 44456


Q ss_pred             CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCceeeeeeccCC----CcCE
Q 001358          907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI  981 (1092)
Q Consensus       907 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~~~~~~~~h----~~~v  981 (1092)
                      ++.+.++|..+.+....  +... ..       ....+++||+.|.++ .++.|.++|..+.+.+..+..+.    -..+
T Consensus        85 ~~~v~viD~~t~~v~~~--i~~g-~~-------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~  154 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKN--FTHQ-MK-------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL  154 (266)
T ss_dssp             CSEEEEEETTTTEEEEE--EECC-SS-------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             CCEEEEEECCCCcEEEE--EECC-CC-------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence            88999999998664432  2221 01       124577788877774 45789999999988877755432    1246


Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCC---CCccCcccceEEEECCCCCCEEEEEeCCCcEEEE
Q 001358          982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1058 (1092)
Q Consensus       982 ~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w 1058 (1092)
                      ..+.|. ||+..+....++.|.+-|..+++...++......+.   ..+....-+..++++|+....++++...+.|.+-
T Consensus       155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            788888 786666655678999999999999999875421110   0011123446799999655678888889999999


Q ss_pred             ecCCC
Q 001358         1059 EPNEP 1063 (1092)
Q Consensus      1059 ~~~~~ 1063 (1092)
                      ++.+.
T Consensus       234 ~l~~~  238 (266)
T 2iwa_A          234 KLHLV  238 (266)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            98654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.68  E-value=3.9e-05  Score=89.87  Aligned_cols=379  Identities=12%  Similarity=0.075  Sum_probs=202.4

Q ss_pred             EEEEeCCCcEEEEECCCCceeEEEecCCcce---------EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001358          458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP  528 (1092)
Q Consensus       458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v---------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~  528 (1092)
                      ++.++.++.|..+|.++|+.+.++.......         ..+++    .+..++.++.|+.|..+|..+++.+......
T Consensus        71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            4445554459999999999998876443211         11122    2347888899999999999999988765443


Q ss_pred             CC----ceE-EEEEec---CCC-EEEEEecCC--CCceeEEEEeCCCCeEEEEEeecccc--------------------
Q 001358          529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ--------------------  577 (1092)
Q Consensus       529 ~~----~i~-~~~~s~---dg~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~--------------------  577 (1092)
                      ..    .+. ...+..   +|+ .++++....  ..++.|+.+|..+|+.+-........                    
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            21    111 111222   234 455543211  12678999999999987665431100                    


Q ss_pred             ------------------CCceEEEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCCceEEE
Q 001358          578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       578 ------------------~~~v~~~~~~~~~~~l~~~s~--------------------d----g~i~iwd~~~~~~~~~  615 (1092)
                                        ...-..+++.|+...++.+..                    |    +.|..+|..+|+.+..
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                              000123566777788887663                    2    5899999999999988


Q ss_pred             EeCCCCC----CCCc-eEEEc---cCCC---EEEEEeCCCeEEEEECCCCCeeeecccccc--cceeeeecCCccccccc
Q 001358          616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       616 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~  682 (1092)
                      ++...+.    ..+. -+.+.   .+|+   .++.++.+|.++++|..+++.+........  ....+...         
T Consensus       307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~---------  377 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK---------  377 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT---------
T ss_pred             EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc---------
Confidence            8653221    0111 12222   4674   788899999999999999988766543221  01111000         


Q ss_pred             ccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEee
Q 001358          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  762 (1092)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~  762 (1092)
                        .+.........|..  +. . .+            +.....+..|.......-..++++|+...+++...+-...++.
T Consensus       378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~  439 (582)
T 1flg_A          378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT  439 (582)
T ss_dssp             --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred             --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence              00000000000000  00 0 00            0000001111111111122467888777777766553333332


Q ss_pred             ecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC
Q 001358          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP  842 (1092)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~  842 (1092)
                      .+..                  ...|            ....-..+...|++.    ..+|.|..||+.+++.+.+....
T Consensus       440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~  485 (582)
T 1flg_A          440 EEVS------------------YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             CCCC------------------CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred             cccc------------------ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence            1100                  0001            111111122223310    12578999999999987766533


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEEE
Q 001358          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILVS  903 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~s  903 (1092)
                      .. +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..+.
T Consensus       486 ~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          486 LP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             SC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence            22 21111112 34578889999999999999999998887543321 12566678764443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.67  E-value=1.4e-05  Score=93.24  Aligned_cols=383  Identities=11%  Similarity=0.038  Sum_probs=202.0

Q ss_pred             EEEEEeC-CCcEEEEEC-CCCceeEEEecCCcc-----------eEEEeecccC--CccEEEEEecCCeEEEEEcCCCCc
Q 001358          457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA  521 (1092)
Q Consensus       457 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~~~~~-----------v~~i~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~  521 (1092)
                      .++.++. ++.|.-+|. .+|+.+.++......           ...+++.+..  ...+++.++.|+.+..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4666666 889999999 899999877543211           0122331111  112378888999999999999988


Q ss_pred             eEEecCCCC----ceEE-EEEecCCCEEEEEecCC--CCceeEEEEeCCCCeEEEEEeeccccC----------------
Q 001358          522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH----------------  578 (1092)
Q Consensus       522 ~~~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~----------------  578 (1092)
                      +........    .+.+ ..+ .++ .+++++...  ..++.|+.+|..+|+.+-.+.......                
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            776544321    1111 111 244 444443211  125789999999999987766432000                


Q ss_pred             ------------------Cce-EEEEEcCCCCEEEEEeCC----------------CeEEEEECCCCceEEEEeCCCCCC
Q 001358          579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       579 ------------------~~v-~~~~~~~~~~~l~~~s~d----------------g~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                                        ..+ ..+++.++...++.+..+                +.|..+|..+|+.+..++...+..
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~  301 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence                              000 134566777888887765                389999999999998887643311


Q ss_pred             ----CCce-EEEc---cCC---CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecC
Q 001358          624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       624 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                          .... +.+.   .+|   ..++.++.+|.+.++|..+++.+.........-..-.+.         ...+...+..
T Consensus       302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~  372 (599)
T 1w6s_A          302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP  372 (599)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred             ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence                0111 2222   467   567778899999999999998776543211000000000         0000000000


Q ss_pred             CCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCc
Q 001358          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~  772 (1092)
                      ...+                      .+.....+..|.......-..++++|+...+++...+....++..+..      
T Consensus       373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------  424 (599)
T 1w6s_A          373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------  424 (599)
T ss_dssp             GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred             ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence            0000                      000001111111111122235688999888877776633322211000      


Q ss_pred             ccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEc
Q 001358          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN  852 (1092)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s  852 (1092)
                                  ...+..          .-..-..+..+|.+.-......|.+..||+.+++.+.+.......... .+.
T Consensus       425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~  481 (599)
T 1w6s_A          425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMA  481 (599)
T ss_dssp             ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEE
T ss_pred             ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceE
Confidence                        000100          000000011112110000002477889999999887766422111111 122


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCe-EEEEEcCCCCEEE
Q 001358          853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV  902 (1092)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~l~  902 (1092)
                      . .+.+++.++.||.++.||.++|+.+.+++-..+.+ .-+.+..+|+..+
T Consensus       482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence            2 35577789999999999999999998886433211 1245556776433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.66  E-value=1.1e-05  Score=94.55  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=68.6

Q ss_pred             EEEEEec-CCeEEEEEc-CCCCceEEecCCCCc-----------eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE
Q 001358          501 FIFSISV-DGKIKAWLY-DSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1092)
Q Consensus       501 ~l~s~~~-dg~i~vwd~-~~~~~~~~~~~~~~~-----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1092)
                      .++.++. ++.|..+|. .+++.+..+......           ...+++  ++..++.++.    ++.|+.+|..+|+.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~  137 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGKI  137 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCCE
Confidence            5566666 788888888 788877665443210           011222  3455666643    56799999999998


Q ss_pred             EEEEeeccccC-CceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEeCC
Q 001358          568 KRTYQGLQLQH-NSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       568 ~~~~~~~~~~~-~~v~~-~~~~~~~~~l~~~s~------dg~i~iwd~~~~~~~~~~~~~  619 (1092)
                      +-.+....... ..+.+ ...  .+..+++++.      ++.|+.+|..+|+.+..+...
T Consensus       138 ~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~  195 (571)
T 2ad6_A          138 NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT  195 (571)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccC
Confidence            87665322000 01111 011  1346666654      799999999999999887653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.63  E-value=5.7e-05  Score=88.46  Aligned_cols=167  Identities=14%  Similarity=0.159  Sum_probs=106.8

Q ss_pred             EEEEcCCCCCEEEEEeC--------------------C----CeEEEEEcCCceeeEeecc--cc--------CCeEEEE
Q 001358          848 SLAFNPHDNNVIAIGMD--------------------D----STILIYNARSSEVISKLEG--HS--------KRVTGLV  893 (1092)
Q Consensus       848 ~l~~s~~d~~~lasg~~--------------------d----g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~  893 (1092)
                      .++++| +..+++.+..                    |    +.|.-+|..+|+.+..++.  |.        .++. +.
T Consensus       250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~  327 (582)
T 1flg_A          250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD  327 (582)
T ss_dssp             CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred             CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence            467777 5567776653                    2    6899999999999887753  32        1222 12


Q ss_pred             Ec-CCCC---EEEEEeCCCcEEEEEcCCCceeeeeeeec------------------CCCCc--------C---------
Q 001358          894 FS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT------------------PDGVM--------T---------  934 (1092)
Q Consensus       894 ~s-pdg~---~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~------------------~~~~~--------~---------  934 (1092)
                      .. .+|+   .++.++.+|.++++|..+++..-......                  .....        .         
T Consensus       328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~  407 (582)
T 1flg_A          328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP  407 (582)
T ss_dssp             EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred             eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence            21 4674   78889999999999999987553222110                  00000        0         


Q ss_pred             CC--CCceEEEEecCCCEEEE-Ee---------------------------------CCcEEEEEcCCceeeeeeccCCC
Q 001358          935 LA--PSETHIQFHKDQTRFLL-VH---------------------------------ETHLAIYEAEELTCLKQWFPISS  978 (1092)
Q Consensus       935 ~~--~~v~~l~~s~dg~~la~-~~---------------------------------d~~v~lwd~~~~~~~~~~~~~h~  978 (1092)
                      ..  ..-..++++|+..++.+ ..                                 ++.|.-||+.+|+.+-+...+  
T Consensus       408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--  485 (582)
T 1flg_A          408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--  485 (582)
T ss_dssp             TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--
T ss_pred             CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--
Confidence            00  00124677887665554 21                                 467999999999887654322  


Q ss_pred             cCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecc
Q 001358          979 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1092)
Q Consensus       979 ~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~ 1018 (1092)
                      .++..-.....|.+++.++.||.++.||..+|+.+.++..
T Consensus       486 ~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          486 LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            2222222333566888899999999999999999998874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.60  E-value=5e-06  Score=83.91  Aligned_cols=185  Identities=14%  Similarity=0.070  Sum_probs=130.3

Q ss_pred             eeEEEeeCCCCcEEEEEEeCCC--cEEEEECCCCceeEEEecCCcce-EEEeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001358          444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG  520 (1092)
Q Consensus       444 v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~  520 (1092)
                      ...+.|+ ++.  ++++.+.+|  .|+++|+++|+.+.++....... ..+++  .+ +.+.+..-.++.+.++|..+.+
T Consensus        45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCc
Confidence            4788898 664  667777766  89999999999998886443221 22443  22 2455555568999999999999


Q ss_pred             ceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeC
Q 001358          521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~  598 (1092)
                      .+..+......   ..+++|++.|+...    +...|.++|+.+.+.+..+.....  ....++.+.|. +|...+..-.
T Consensus       119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            88877654422   34557888887763    256799999999999888765320  11334557776 6654444447


Q ss_pred             CCeEEEEECCCCceEEEEeCCCC----------CCCCceEEEccCCCEEEEEeC
Q 001358          599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      ++.|.+.|..+++.+..+...+-          ....+.+||+|+++.|.+.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            88999999999999999876421          123478999999888887776

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.55  E-value=1.1e-05  Score=98.45  Aligned_cols=250  Identities=9%  Similarity=-0.012  Sum_probs=134.5

Q ss_pred             CceEEeec-CCCceEEEEEcCcC----cEEEEecCCC-CceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCC
Q 001358          336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1092)
Q Consensus       336 ~V~~v~~s-pdg~~llasg~~d~----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~  409 (1092)
                      .+...+|| |||++++.+.+.+|    +|+++|+.+| +.+.. .                 +.   .....++|+|||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence            67889999 99996554444333    4999999998 63321 0                 10   1134688999999


Q ss_pred             EEEEEeCC-----CEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEe-CCCcEEEEECCCCc-ee--E
Q 001358          410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y  479 (1092)
Q Consensus       410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~-~~--~  479 (1092)
                      .|+....+     ..|.++++.++...... .+. ........+.|||||+++++.+.. ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            99887654     36888888776422111 222 223346678999999963333322 23468888988762 22  3


Q ss_pred             EE-ecCCcceEEEeecccCCccEEEEEecC--C--eEEEEEcCCCCceEE-ecCCCCceEEEEEecCCCEEEEEecCCCC
Q 001358          480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       480 ~~-~~~~~~v~~i~~~~~~~~~~l~s~~~d--g--~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .+ ........++.|+  .++.+++....+  +  .|..+++.+...... +..+...+.--.+++++..|+.... .++
T Consensus       313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~-~~g  389 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGR-RAG  389 (751)
T ss_dssp             ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEE-ETT
T ss_pred             EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEE-eCC
Confidence            33 2334444554432  233444444443  2  466666654222122 2222222222234445666665543 234


Q ss_pred             ceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEE----cCCCCEE-EEEeCC---CeEEEEECCCCce
Q 001358          554 ESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL  612 (1092)
Q Consensus       554 ~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~s~d---g~i~iwd~~~~~~  612 (1092)
                      ...|+++++       .+++....+....  ...+..+.+    ++++..+ ++.+..   +.++.+|+.+++.
T Consensus       390 ~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          390 LTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             EEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             EEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            667888886       4444123332111  112333322    3455544 443322   4677788877764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.52  E-value=0.0066  Score=74.34  Aligned_cols=572  Identities=13%  Similarity=0.068  Sum_probs=299.2

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      ...|.++.-..+|...++  +.+| +..||-..   ...+..     .          -......|.++....+| .|-.
T Consensus        21 ~n~V~~I~qD~~G~lWig--T~~G-L~ryDG~~---~~~~~~-----~----------~~~~~~~i~~i~~d~~g-~lWi   78 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIG--SNKG-LFSYDGYS---TQQHFT-----Y----------GENNNTRIYCGVIIDNT-YLYM   78 (758)
T ss_dssp             CCCEEEEEECTTSCEEEE--ESSC-EEEECSSC---EEECSC-----T----------TSTTSSCEEEEEEETTT-EEEE
T ss_pred             cceEEEEEECCCCCEEEE--ECCC-ccccCCCc---eEEEEc-----c----------CCCCCceEEEEEEcCCC-cEEE
Confidence            347999999999974444  4555 55666321   111000     0          00123568888877766 5556


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-----cCCcce
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV  488 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v  488 (1092)
                      |+.+| +..||..++....   ........|.++.. .+|.   +..++.+ -+..+|..+++.. .+.     .....|
T Consensus        79 gT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i  148 (758)
T 3ott_A           79 GTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI  148 (758)
T ss_dssp             EETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred             EeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence            66666 8899988753221   01112235777654 3554   4445545 6888998776543 331     112356


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecC----CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      .++..  +.++.+.+ ++.+| +..++..+...... ...    ....|.++...+++..|..+..     +-+..+|..
T Consensus       149 ~~i~~--d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~  219 (758)
T 3ott_A          149 YSIIR--TKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS  219 (758)
T ss_dssp             EEEEE--CTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred             EEEEE--cCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence            66655  33444444 55544 66677655432211 111    1224788888877775555542     128889988


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC-----CCCCCceEEEccCCCEEE
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~  638 (1092)
                      +++........   ...|.++....++.. ..|+. +-+.+++..++..........     ....|.++....+|. |.
T Consensus       220 ~~~~~~~~~l~---~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW  293 (758)
T 3ott_A          220 TGQIKQTEAFH---NNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW  293 (758)
T ss_dssp             TTEEEEEEEEE---EEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred             CCeEEeccCCC---CCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence            77653322111   246888888877654 44554 458888887765433221110     112356666666665 44


Q ss_pred             EEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeec
Q 001358          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1092)
                      +|+..| +.++....  ......                                                     ..  
T Consensus       294 iGT~~G-l~~~~~~~--~~~~~~-----------------------------------------------------~~--  315 (758)
T 3ott_A          294 LGTDYG-ISLSRYNS--ALQFIP-----------------------------------------------------IS--  315 (758)
T ss_dssp             EEESSS-EEEECCCC---CEEEE-----------------------------------------------------HH--
T ss_pred             EEeCCc-ccccccCC--ceeEEe-----------------------------------------------------cc--
Confidence            455555 43332211  000000                                                     00  


Q ss_pred             cCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCC
Q 001358          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1092)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  798 (1092)
                              ..........|.++....+|...+.+ .+|. ..++......         .....+......    ..+  
T Consensus       316 --------~~~~~~~~~~v~~i~~D~~g~lWiGt-~~Gl-~~~~~~~~~~---------~~~~~~~~~~~~----~~l--  370 (758)
T 3ott_A          316 --------QITGTGDGNQFYSLFRDSKGFYWFGG-ANGL-IRFTDPAGER---------HDAIWYRMGDKT----YPL--  370 (758)
T ss_dssp             --------HHSCSCCCCBEEEEEECTTCCEEEEE-TTEE-EEESCTTSSC---------CCCEEECTTCSS----SCC--
T ss_pred             --------cCCCCCCCceEEEEEEcCCCCEEEee-CCcc-eeeccccccc---------ceeEEeccCCcC----CCC--
Confidence                    00000022356777777778755544 4553 3333211100         001111100000    001  


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--cC----CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001358          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHDNNVIAIGMDDSTILIYN  872 (1092)
Q Consensus       799 ~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1092)
                        ....|.++.-.++|++.+.. ++-+..+|..+++.....  ..    ....|.++...+ ++. |-.|+..+-+.++|
T Consensus       371 --~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~  445 (758)
T 3ott_A          371 --SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVD  445 (758)
T ss_dssp             --SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEE
T ss_pred             --CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEc
Confidence              23568888888888876654 667999998877654321  11    224578888876 554 55577766688888


Q ss_pred             cCCc-----eee---Eeec---c-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358          873 ARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       873 ~~~~-----~~~---~~l~---~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      ..+.     ...   ..+.   + ....|.++...++|++.+.++..+-|..+|..+++...   +.. ... .....+.
T Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~~-~~~-~~~~~~~  520 (758)
T 3ott_A          446 KHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LFA-DEL-TGEKSPN  520 (758)
T ss_dssp             HHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---ECT-TTS-CGGGCEE
T ss_pred             cccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ecC-CCc-CCCcccc
Confidence            6531     111   1111   1 12358999999999877644444558889988754332   111 110 0012477


Q ss_pred             EEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccc
Q 001358          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       941 ~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      ++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|.+.+ ++..| +..+|..+.+... +.  
T Consensus       521 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~~-~~--  593 (758)
T 3ott_A          521 YLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDARQ-QN--  593 (758)
T ss_dssp             EEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEEE-C---
T ss_pred             eEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeEE-ec--
Confidence            888888898877654 56888887665432210111 13567888764 665444 55555 7788888776542 11  


Q ss_pred             cccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCC
Q 001358         1020 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062 (1092)
Q Consensus      1020 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~ 1062 (1092)
                        ++..    .+. -++...+  ...|..|+.+|- ..++...
T Consensus       594 --~~~~----~~~-~~~~~~~--~G~l~fG~~~Gl-~~f~p~~  626 (758)
T 3ott_A          594 --MTNK----RFT-SLLFDPK--EDCVYLGGADGF-GISHSNL  626 (758)
T ss_dssp             ---CCC----CCS-EEEEETT--TTEEEEECBSEE-EEEEC--
T ss_pred             --CCCC----cee-eeEEECC--CCcEEEecCCce-EEEChhh
Confidence              1111    122 1222233  357888888875 4455543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.49  E-value=8.2e-06  Score=82.35  Aligned_cols=184  Identities=12%  Similarity=0.109  Sum_probs=125.2

Q ss_pred             eeEEEEecCCCEEEEEe-CC--eEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 001358          805 VPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1092)
                      ...+.|+ ++.++.+.+ +|  .|+++|+++++.+..+.-.... .-.+++.  ++++.+....++.+.+||..+.+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4678898 666655555 44  7999999999998887644322 2335554  34555555668999999999999999


Q ss_pred             eeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcE
Q 001358          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL  959 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v  959 (1092)
                      ++..-.   ....+++|++.|+.+..++.|.++|..+.+......+.. .+...  ..+..+.|. +|+..+.. .++.|
T Consensus       122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I  194 (262)
T 3nol_A          122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI  194 (262)
T ss_dssp             EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence            887422   223444678877776667889999999876554333321 11110  134557776 77655554 56789


Q ss_pred             EEEEcCCceeeeeeccCC-----------CcCEEEEEEecCCCEEEEEeC
Q 001358          960 AIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~t~s~  998 (1092)
                      .+.|..+|+.+..+-.+.           ..-...++|+|+++.|++.+.
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            999999999887754320           235688999999888777764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=6.8e-05  Score=81.29  Aligned_cols=268  Identities=10%  Similarity=0.033  Sum_probs=149.3

Q ss_pred             ecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeee--eeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK--VWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .+.+.-....+++|+++|+ ++.++..++.|..||..++....- ...  .+....|..... .........+..+++.+
T Consensus        13 ~~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~p~gi~~~~   89 (322)
T 2fp8_A           13 LIEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTD-AEKRPLCGRTYDISYNL   89 (322)
T ss_dssp             EEECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCC-GGGHHHHCCEEEEEEET
T ss_pred             ecCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccc-hhccccCCCCceEEEcC
Confidence            3444434678899999998 566777889999999876643210 000  000000000000 00000113578899998


Q ss_pred             -CCCEEEEEeCCCEEEEEEccCCCCccceE-Eecc-cccceeEEEeeC-CCCcEEEEEEeC-----------------CC
Q 001358          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DK  465 (1092)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~-~l~~-h~~~v~~~~~s~-d~~~l~l~s~~~-----------------d~  465 (1092)
                       +|+ |.++...+.|..+|..++.. .... ...+ .......+++.+ +|.  +.++...                 ++
T Consensus        90 ~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           90 QNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             TTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             CCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCc
Confidence             555 55554445588888776532 1111 1111 113467899999 887  5554422                 36


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEE-EEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEecCCC
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGR  542 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~  542 (1092)
                      .|..||..+++....... ....+.++++  +++.+|+ +-+..+.|.++++....  ....+....+ ...+++.++|+
T Consensus       166 ~v~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          166 RLIKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH  241 (322)
T ss_dssp             EEEEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred             eEEEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence            788999877765332222 2234567774  4666554 44667899999987531  1111111222 77899999998


Q ss_pred             EEEEEecCC------CCceeEEEEeCCCCeEEEEEeecccc-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358          543 RLFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       543 ~l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                      ..++.....      ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++...++.|.++++..
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            766654210      013568889874 7777777654210 134566666 3444444445677888888753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=2.7e-05  Score=84.45  Aligned_cols=240  Identities=10%  Similarity=-0.010  Sum_probs=146.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEec-----------------ccccceeEEEeeC-CCCcEEE
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV  458 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-----------------~h~~~v~~~~~s~-d~~~l~l  458 (1092)
                      .....++|.++|+++.++..++.|..||..+++. .......                 ........+++.+ +++   |
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L   94 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence            4566789999999888888889999999876532 1111000                 0123578899998 665   4


Q ss_pred             EEEeCCCcEEEEECCCCceeEEEec-----CCcceEEEeecccC-CccEEEEEec-----------------CCeEEEEE
Q 001358          459 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL  515 (1092)
Q Consensus       459 ~s~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~-~~~~l~s~~~-----------------dg~i~vwd  515 (1092)
                      +.+...+.|..+|..+++. ..+..     .....+.+++  .+ +|.+.++...                 +|.|..+|
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            4444455588899776543 22221     1123566776  44 5566665432                 36688887


Q ss_pred             cCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEE
Q 001358          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI  593 (1092)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l  593 (1092)
                      ..+........ .......++++++|+.|+.+..   ..+.|+.++.....  ....+....   + ...+++.++|+..
T Consensus       172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~  243 (322)
T 2fp8_A          172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW  243 (322)
T ss_dssp             TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred             CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence            76554322211 1123456899999997776643   24579999987531  112222222   3 7789999999866


Q ss_pred             EEEeC----------CCeEEEEECCCCceEEEEeCCCC--CCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          594 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       594 ~~~s~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      ++...          .+.|..+|. .++.+..+....+  ...+..+++ .+++++++...++.|..+++..
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            66544          467888887 4777777765432  234566666 4566666555678899988764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.47  E-value=3.9e-05  Score=77.31  Aligned_cols=185  Identities=10%  Similarity=0.109  Sum_probs=128.0

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      .-...+.|+ ++.+..+.+.+|.|+++|+++++.++..  +..   ........++++. +.+..-.++.+.++|.++.+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence            445778887 4666677788889999999999987754  333   2333223345555 44456678999999999999


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC--CC---ceEEEEEecCCCEEEEEecCC
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GL---GCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~---~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .+.++..... -..++.    |++.|+.+..++.|.++|..+.+....+.-.  ..   .+..+.+. +|+ |.+...  
T Consensus       128 ~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw--  198 (268)
T 3nok_A          128 RERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW--  198 (268)
T ss_dssp             EEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred             EEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence            9999975332 234443    4567777777999999999988876655432  22   34566776 775 444432  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccc----------cCCceEEEEEcCCCCEEEEEeC
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~s~  598 (1092)
                       ....|.+.|+.+|+.+..+.....          .....+.++++|+++.|++.+.
T Consensus       199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence             245799999999999988875311          1245789999999888877664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.46  E-value=8.9e-05  Score=79.57  Aligned_cols=228  Identities=13%  Similarity=0.107  Sum_probs=138.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-CC-cEEEEECCC
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT  474 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-d~-~i~vwd~~~  474 (1092)
                      .....++|+++|+++++-..++.|..||..++.  ...  + ........+++.++|+  ++++... ++ .|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence            457789999999977776678899999987632  211  1 2234688999999998  4554433 32 477778778


Q ss_pred             CceeEEEec-CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCceEEEEEecCCCE
Q 001358          475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR  543 (1092)
Q Consensus       475 ~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~dg~~  543 (1092)
                      ++....... .......++..  .++..+++...++.|.++|......... .       .  ..-.....+  ++|++.
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            875433221 11222344432  2334455555688888888765321111 0       0  111234455  889988


Q ss_pred             EEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358          544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                      |+.+..   ..+.|+.++... ++.  ...+...    .....+++.++|+..++....+.|.+++.. ++.........
T Consensus       181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            877653   356799999864 332  1122111    245668899999876766678899999975 65533222222


Q ss_pred             CCCCCceEEEc---cCCCEEEEEeCC
Q 001358          621 GLPENPRICFN---KNGTLLAVIANE  643 (1092)
Q Consensus       621 ~~~~v~~v~~s---~~~~~l~~~~~d  643 (1092)
                      ......+++|.   |+++.|++.+..
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCC
Confidence            22456889998   888877776654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=6.6e-06  Score=82.90  Aligned_cols=184  Identities=9%  Similarity=0.077  Sum_probs=124.3

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCC-CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 001358          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1092)
                      -...+.|+. +.++.+.+ +|.|+++|+++++.+..+ -... ..-.+++.  ++++.+....++.+.+||..+.+.+.+
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            346788873 44444444 588999999999988887 2222 22346665  355666667789999999999999998


Q ss_pred             eccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEE
Q 001358          882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA  960 (1092)
Q Consensus       882 l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~  960 (1092)
                      +..- ..-..+  ++|++.|+.+..++.|.++|..+.+......+.......   ..+..+.|. +|+..+.. ..+.|.
T Consensus       132 i~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          132 TRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeEE
Confidence            8742 222333  467888888777889999999987655533332211111   135667777 77655554 567899


Q ss_pred             EEEcCCceeeeeeccC------------CCcCEEEEEEecCCCEEEEEeC
Q 001358          961 IYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       961 lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~s~  998 (1092)
                      +.|..+|+.+..+-.+            -..-...++++|+++.|++.+.
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999987765322            1235688999998766655543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.44  E-value=0.00048  Score=74.43  Aligned_cols=234  Identities=9%  Similarity=0.042  Sum_probs=132.5

Q ss_pred             CCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEec---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      ...+.++.+.+ +..++++..+.|.. ....|+.-....   .+...+..+++.+ ++..++++ .+|.|.. ..+.|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence            44678899986 55666665664433 222233222222   2334577888876 66666655 4564432 2222332


Q ss_pred             e-EeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC
Q 001358          879 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1092)
Q Consensus       879 ~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~  957 (1092)
                      = ....++...+..+++.+++.+++.+...+..+-+|-....   ...+....     ...+..+++++++++++++.++
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRTT-----SRRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECCS-----SSCEEEEEECTTSCEEEEETTT
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCCC-----CCccceeEECCCCCEEEEeCCc
Confidence            1 1223455678999999998888766444333333321111   11222211     1257899999999988888888


Q ss_pred             cEEEEEcCCceeeeeeccC---CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358          958 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       958 ~v~lwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      .+++.+...|+.......+   +...+.++.+.+++..++++ .+|.| ++..+.|+.-..+......+.     .++  
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~--  296 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY--  296 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--
Confidence            8877654435443332212   23468899999888877765 57766 566666755433331111111     244  


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEe
Q 001358         1035 AIAAHPLKPTQFAVGLTNGEVYVIE 1059 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~~w~ 1059 (1092)
                      ++.+.+  +..+++++.+|.|.-++
T Consensus       297 ~v~~~~--~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          297 KILFFS--PDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred             EEEEEC--CCceEEEcCCceEEEEc
Confidence            455543  35688888999776654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.42  E-value=1.1e-05  Score=97.11  Aligned_cols=277  Identities=10%  Similarity=0.040  Sum_probs=155.9

Q ss_pred             EEeecC-CCceEEEEEcCcC-----------cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       339 ~v~~sp-dg~~llasg~~d~-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ++++.| +|+ +++.|+.+.           .+.+||..+++-.....                ....+.....++++.+
T Consensus       190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG  252 (656)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred             eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence            567777 787 777776432           57888888775332100                1122333444678889


Q ss_pred             CCCEEEEEeC-CCEEEEEEccCCCCccceEEecccccc-eeEEEeeCCCCcEEEEEEe-CC-----CcEEEEECCCCcee
Q 001358          407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT  478 (1092)
Q Consensus       407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~-v~~~~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~~~~~  478 (1092)
                      +|+.+++|+. +..+.+||..+++-.. ...+  +..+ -.+++..++++  +++.|+ .+     ..+.+||..+++..
T Consensus       253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~  327 (656)
T 1k3i_A          253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT  327 (656)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             CCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence            9999999984 4579999998764221 1111  1111 23456667888  777777 34     57999999887643


Q ss_pred             EEEecC-CcceE----EEeecccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCceEEE
Q 001358          479 YSFEGH-GAPVY----SLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRM  535 (1092)
Q Consensus       479 ~~~~~~-~~~v~----~i~~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~---------~~~i~~~  535 (1092)
                      .. ... ..+..    ...+  ..++..++.++.+|         .+..||..+..-.......         ...-.++
T Consensus       328 ~~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av  404 (656)
T 1k3i_A          328 SL-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  404 (656)
T ss_dssp             EE-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             eC-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceE
Confidence            32 100 00000    0011  12344555565554         4677887765432221111         1122344


Q ss_pred             EEec-CCCEEEEEecCCC----Cce---eEEEEeCCCCeEEEEE--eeccccCCceEEEEEcCCCCEEEEEeCC------
Q 001358          536 AYSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------  599 (1092)
Q Consensus       536 ~~s~-dg~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~s~d------  599 (1092)
                      .+.. +++.+++++....    ...   .+.+||..+.......  ....  ...-.+++..|+++.++.|+.+      
T Consensus       405 ~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~  482 (656)
T 1k3i_A          405 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFE  482 (656)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred             eccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcC
Confidence            4543 6777777764221    011   6888998887654433  1111  1223455677899999998754      


Q ss_pred             -----CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          600 -----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       600 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                           ..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus       483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                 4689999988665432222211112234556789999999885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.42  E-value=0.0008  Score=73.37  Aligned_cols=249  Identities=11%  Similarity=-0.012  Sum_probs=155.0

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .+..+|.+..+++. ++.+  ....|+..++........                   .. ....+..++|++.+..|..
T Consensus        33 ~d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~   89 (349)
T 3v64_C           33 PDRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW   89 (349)
T ss_dssp             TTSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred             CCCCcccccccCce-eEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence            34567877777553 4443  235688888766543221                   22 3345889999987666665


Q ss_pred             E-eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEe
Q 001358          414 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       414 ~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~  492 (1092)
                      + ...+.|..+++.++....   .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........++
T Consensus        90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia  165 (349)
T 3v64_C           90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA  165 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred             EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence            5 456789999998764221   12222334578999986664 456666678999999775543333333445567888


Q ss_pred             ecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEE
Q 001358          493 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1092)
                      +.+. ++.++++-... +.|...+++.................++++|++..|+.+-.   +.+.|..+|.........+
T Consensus       166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI  241 (349)
T ss_dssp             EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred             EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence            8653 34455555555 78888888765444433333446789999998888877643   2567999998754333333


Q ss_pred             eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      ....   .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus       242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            2222   456677773 34444455567888888877777666654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=6.9e-05  Score=75.01  Aligned_cols=186  Identities=12%  Similarity=0.069  Sum_probs=129.3

Q ss_pred             ceeEEEeeCCCCcEEEEEEeCC--CcEEEEECCCCceeEEEecCCcce-EEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001358          443 NVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~~d--~~i~vwd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      -...+.|++ +.  ++.+.+.+  +.|+++|+++|+.+.++....... ..+++  . ++++.+..-.++.+.++|..+.
T Consensus        22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~-~~~ly~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--W-RDRLIQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTT
T ss_pred             ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--e-CCEEEEEEeeCCEEEEEECCcC
Confidence            466889986 44  66677765  489999999999998886443322 23333  2 2355566667899999999999


Q ss_pred             CceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEe
Q 001358          520 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG  597 (1092)
Q Consensus       520 ~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s  597 (1092)
                      +.+.++.....+   ..+.+|+..|+.+.    +...|.++|..+.+.++.+.....  ....++.+.+. +|...+...
T Consensus        96 ~~~~ti~~~~~G---wglt~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           96 TPRARFRYPGEG---WALTSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             EEEEEEECSSCC---CEEEECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             cEEEEEeCCCCc---eEEeeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            888877655433   34457788777763    366799999999999888765330  11245566665 555444444


Q ss_pred             CCCeEEEEECCCCceEEEEeCCC-----------CCCCCceEEEccCCCEEEEEeC
Q 001358          598 DDHVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      .+..|.+.|..+|+.+..+...+           .....+.+|++|+++.|.+.+.
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            68899999999999999987542           1123478999998887777765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.39  E-value=0.00017  Score=73.41  Aligned_cols=207  Identities=8%  Similarity=0.009  Sum_probs=134.3

Q ss_pred             EecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      +.|.|-.+++..++|+|++..|.++...++.|...|.. |+.++...                 +.+ ....-.|++.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~   80 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD   80 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence            46777777999999999887788888888999999998 77665422                 222 256788999999


Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCccceEEe--c----ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC---CCcee
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEI--D----AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRT  478 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l--~----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~  478 (1092)
                      +.++++.-.++.+.++++.....+......  .    ........++|+|+++.  |+++.......||.+.   .+..+
T Consensus        81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l  158 (255)
T 3qqz_A           81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL  158 (255)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred             CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence            987777656778999998765432211111  1    12345689999999985  3333333333444432   12222


Q ss_pred             EEEe-------cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEecCCC
Q 001358          479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR  542 (1092)
Q Consensus       479 ~~~~-------~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~dg~  542 (1092)
                      ..+.       .+...+.++++++. .+++++.....+.+.++|.+.. .+..+....         .....|+|.++|+
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            2221       12345678888875 4578888888888999987644 333332221         2568999999998


Q ss_pred             EEEEEecCCCCceeEEEEeC
Q 001358          543 RLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      ..++ +.    .+.++.+..
T Consensus       237 lyIv-sE----~n~~y~f~~  251 (255)
T 3qqz_A          237 IYIV-SE----PNRFYRFTP  251 (255)
T ss_dssp             EEEE-ET----TTEEEEEEC
T ss_pred             EEEE-cC----CceEEEEEe
Confidence            5555 43    345666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.36  E-value=6.5e-05  Score=90.27  Aligned_cols=121  Identities=12%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             EEEEec-CCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEE
Q 001358          534 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI  604 (1092)
Q Consensus       534 ~~~~s~-dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~i  604 (1092)
                      ..++.+ +++.++.++...+       ....+.+||+.+++................++++..++..++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456777 8888888775432       123689999998865432222111112334567788898888887 4568999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEe-CC-----CeEEEEECCCCC
Q 001358          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN  655 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~~  655 (1092)
                      ||..+.+....-..+.. ..-..++..+++++++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99988765544322221 1123566667899999988 34     457788876653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.36  E-value=0.0004  Score=74.46  Aligned_cols=227  Identities=11%  Similarity=0.029  Sum_probs=136.5

Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      .....++++++|+.+++-..++.|..|+....                       ......     ....+..++++++|
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-----------------------~~~~~~-----~~~~p~gia~~~dG   83 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------------------QQIHAT-----VEGKVSGLAFTSNG   83 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------------------EEEEEE-----CSSEEEEEEECTTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-----------------------eEEEEe-----CCCCceeEEEcCCC
Confidence            35678899999986666556777776653211                       011111     12357789999999


Q ss_pred             CEEEEEeC-C--eEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-eEee-------
Q 001358          815 AYLFSASG-G--VISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKL-------  882 (1092)
Q Consensus       815 ~~l~~~sd-g--~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l-------  882 (1092)
                      +++++... +  .|..+|..+++....... .......++..+ ++..+++-..++.|+++|..+++. +...       
T Consensus        84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~  162 (306)
T 2p4o_A           84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS  162 (306)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred             cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence            97665543 2  476777777765433221 222345566666 565555555688999999876531 1100       


Q ss_pred             --ccccCCeEEEEEcCCCCEEE-EEeCCCcEEEEEcCC-CceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001358          883 --EGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  957 (1092)
Q Consensus       883 --~~h~~~V~~l~~spdg~~l~-s~s~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~  957 (1092)
                        .+.-.....+  +||++.|. +-...+.|..++++. ++......+...       .....+++.++|++.++ ...+
T Consensus       163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~  233 (306)
T 2p4o_A          163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYN  233 (306)
T ss_dssp             STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTC
T ss_pred             cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCC
Confidence              1111234455  78887654 445678899999875 332222222221       13457999999988777 4567


Q ss_pred             cEEEEEcCCceeeee-eccCCCcCEEEEEEe---cCCCEEEEEeCCC
Q 001358          958 HLAIYEAEELTCLKQ-WFPISSVPISQATFS---CDCRMVFTSFVDG 1000 (1092)
Q Consensus       958 ~v~lwd~~~~~~~~~-~~~~h~~~v~~l~fs---~dg~~l~t~s~Dg 1000 (1092)
                      .|.++|.. ++.... .........++++|.   +|++.|+.++..+
T Consensus       234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            89999975 554221 122223568999999   8988777766543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.35  E-value=0.0012  Score=71.02  Aligned_cols=238  Identities=10%  Similarity=-0.039  Sum_probs=145.6

Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC---CceeEE-EecCC
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~~~-~~~~~  485 (1092)
                      +|+.+.. ..|+..|+.+++...   .+ ........++|.+++.. ++++-...+.|..+++.+   +..... +....
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            4444444 348888988765332   22 23445789999987664 555666678999999876   222222 32222


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+...  ..+.|+..++...
T Consensus        77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG~  153 (316)
T 1ijq_A           77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  153 (316)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCCC
Confidence            34567777432 34566666778899999987654444443344567899999977777665431  1357888887543


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                       ....+....  ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       154 -~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          154 -DIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             -CEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             -CeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence             333332211  25678999999887777655 5678999998754433333322222234577775 456666666678


Q ss_pred             eEEEEECCCCCeeeec
Q 001358          645 RIKILETPESNSVDAA  660 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~  660 (1092)
                      .|..++..+++....+
T Consensus       230 ~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          230 AIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTTCCCCEEE
T ss_pred             eEEEEeCCCCcceEEE
Confidence            8999987766554443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.35  E-value=7.6e-05  Score=74.70  Aligned_cols=187  Identities=10%  Similarity=0.039  Sum_probs=125.4

Q ss_pred             CCCeeEEEEecCCCEEEEEe-C--CeEEEEEcCCceeeEEecCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001358          802 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1092)
Q Consensus       802 ~~~v~~~~~s~dg~~l~~~s-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1092)
                      ..-...+.|++ +.++.+.+ +  +.|+.+|+.+++.+..+.-.... --.+++.  ++++......++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            34456888986 45555444 2  47999999999999887644332 2345554  45566666778999999999999


Q ss_pred             eeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC
Q 001358          878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  956 (1092)
Q Consensus       878 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d  956 (1092)
                      .+.++..-.. -..+  ++|++.|+.+..++.|.++|..+.+......+.......   ..+..+.+. +|+..+.. ..
T Consensus        97 ~~~ti~~~~~-Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~---~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPGE-GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL---DNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSSC-CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCCC-ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc---ccceeeEEe-CCEEEEEECCC
Confidence            9998874322 2344  467777777777889999999987655433332211111   134556655 67655554 56


Q ss_pred             CcEEEEEcCCceeeeeeccC------------CCcCEEEEEEecCCCEEEEEeC
Q 001358          957 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       957 ~~v~lwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~s~  998 (1092)
                      +.|.+.|..+|+.+..+-.+            -..-...++++|+++.|++.+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            78999999999988765422            1235688999998877776654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.34  E-value=0.00062  Score=75.44  Aligned_cols=249  Identities=11%  Similarity=-0.005  Sum_probs=155.2

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      +.-.|.+..+.+ +++++  ....|+..++.++.....                   . .....+..++|.+.+..|..+
T Consensus        77 d~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~  133 (386)
T 3v65_B           77 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWS  133 (386)
T ss_dssp             TSSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEE
T ss_pred             CCCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEE
Confidence            345677777754 34443  236788888876654321                   1 233468899999866666555


Q ss_pred             -eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358          415 -YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       415 -~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~  493 (1092)
                       ...+.|..+++.++....   .+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++
T Consensus       134 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giav  209 (386)
T 3v65_B          134 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL  209 (386)
T ss_dssp             ETTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEE
T ss_pred             eCCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEE
Confidence             456789999988754211   12222234567899886664 4556666778999887655433333333455678888


Q ss_pred             cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358          494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      .+. ++.++++-... +.|...+++...........-.....++++|++..|+.+-.   ..+.|..+|.........+.
T Consensus       210 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~  285 (386)
T 3v65_B          210 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS  285 (386)
T ss_dssp             ETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEEC
T ss_pred             EcC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEE
Confidence            643 33445554444 77888888765554444444446789999998888877643   25679999986543333332


Q ss_pred             eccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeC
Q 001358          573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      ...   .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus       286 ~~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          286 QGL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             SSC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            222   45677777 3344455555778888888777777666653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.33  E-value=0.017  Score=70.67  Aligned_cols=525  Identities=11%  Similarity=0.039  Sum_probs=272.5

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..|.++....+|..  -.|+.+ -+..+|..++.....                   .......|.++.. .+| .|..+
T Consensus        63 ~~i~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-------------------~~~~~~~i~~i~~-~~g-~lWig  118 (758)
T 3ott_A           63 TRIYCGVIIDNTYL--YMGTDN-GILVYNYRADRYEQP-------------------ETDFPTDVRTMAL-QGD-TLWLG  118 (758)
T ss_dssp             SCEEEEEEETTTEE--EEEETT-EEEEEETTTTEECCC-------------------SCCCCSCEEEEEE-ETT-EEEEE
T ss_pred             ceEEEEEEcCCCcE--EEEeCC-CeEEEeCCCCEEECc-------------------ccCCCceEEEEEe-cCC-cEEEE
Confidence            46888888888863  334444 478899877532110                   0112235777765 355 55556


Q ss_pred             eCCCEEEEEEccCCCCccceEEec-----ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC-----
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEID-----AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-----  484 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~-----~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~-----  484 (1092)
                      +.+| +..+|..+++..    .+.     .....|.++....+|.  +. .|+.+ -+..+|..+++... +...     
T Consensus       119 t~~G-l~~~~~~~~~~~----~~~~~~~~l~~~~i~~i~~d~~g~--lW-igt~~-Gl~~~~~~~~~~~~-~~~~~~~~~  188 (758)
T 3ott_A          119 ALNG-LYTYQLQSRKLT----SFDTRRNGLPNNTIYSIIRTKDNQ--IY-VGTYN-GLCRYIPSNGKFEG-IPLPVHSSQ  188 (758)
T ss_dssp             ETTE-EEEEETTTCCEE----EECHHHHCCSCSCEEEEEECTTCC--EE-EEETT-EEEEEETTTTEEEE-ECCCCCTTC
T ss_pred             cCCc-ceeEeCCCCeEE----EeccCCCCcCCCeEEEEEEcCCCC--EE-EEeCC-CHhhCccCCCceEE-ecCCCcccc
Confidence            6664 888998765421    121     1134588888887777  33 34444 47788877765432 2111     


Q ss_pred             -CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 -~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                       ...|.++..  +.++..|..|+. +-+..++..+.............|.++....+|...+.. .    . -+.+++..
T Consensus       189 ~~~~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~----~-Gl~~~~~~  259 (758)
T 3ott_A          189 SNLFVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-D----N-GLYVYHND  259 (758)
T ss_dssp             SSCCEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-T----T-EEEEECCT
T ss_pred             ccceeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-C----C-ceeEEecC
Confidence             123666655  334444555554 457778766543322111123457788887788766654 2    1 27888887


Q ss_pred             CCeEEEEEee----ccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe-----CCCCCCCCceEEEccCC
Q 001358          564 EGAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-----AGGGLPENPRICFNKNG  634 (1092)
Q Consensus       564 ~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~v~~s~~~  634 (1092)
                      ++........    .......|.++....++. |-.|+..| +.++.... . .....     .......|.++.-..+|
T Consensus       260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g  335 (758)
T 3ott_A          260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKG  335 (758)
T ss_dssp             TSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred             CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCC
Confidence            7654322211    111235688888887765 55566666 54443322 1 11111     00111246667766667


Q ss_pred             CEEEEEeCCCeEEEEECCCCCe--eeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          635 TLLAVIANENRIKILETPESNS--VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                      .+.+ |+.+ -+..++..++..  +....                                                   
T Consensus       336 ~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~---------------------------------------------------  362 (758)
T 3ott_A          336 FYWF-GGAN-GLIRFTDPAGERHDAIWYR---------------------------------------------------  362 (758)
T ss_dssp             CEEE-EETT-EEEEESCTTSSCCCCEEEC---------------------------------------------------
T ss_pred             CEEE-eeCC-cceeecccccccceeEEec---------------------------------------------------
Confidence            6444 4554 455555443210  00000                                                   


Q ss_pred             eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCcee
Q 001358          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM  792 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  792 (1092)
                        ..  ..        +.......|.++....+|...+.+ . +-+..|+......            ..+..       
T Consensus       363 --~~--~~--------~~~l~~~~v~~i~~d~~g~lWigt-~-~GL~~~~~~~~~~------------~~~~~-------  409 (758)
T 3ott_A          363 --MG--DK--------TYPLSHNRIRHIYEDKEQQLWIAT-D-GSINRYDYATRQF------------IHYNI-------  409 (758)
T ss_dssp             --TT--CS--------SSCCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEE------------EEEEE-------
T ss_pred             --cC--Cc--------CCCCCCCceEEEEECCCCCEEEEe-C-CcHhhcCcCCCcE------------EEeec-------
Confidence              00  00        000022457777777778755543 3 4455555332211            00000       


Q ss_pred             eecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----eee---EEec---C-CCCCeEEEEEcCCCCCEEE
Q 001358          793 VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIA  860 (1092)
Q Consensus       793 ~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~la  860 (1092)
                       ...........|.++...++|.+.+...++-+.++|..+.     ...   ..+.   + ....|.++...+ ++.+.+
T Consensus       410 -~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi  487 (758)
T 3ott_A          410 -VDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWV  487 (758)
T ss_dssp             -ECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEE
T ss_pred             -CCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEE
Confidence             0000000234578888888887666554667888886531     111   1111   1 223588999988 777665


Q ss_pred             EEeCCCeEEEEEcCCceeeEeecc---ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCC
Q 001358          861 IGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1092)
                      .++..+-+..+|..+++.......   ....+.++....+|.+.+. +..| |..++..++....   .. ..+..  ..
T Consensus       488 ~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~--~~  559 (758)
T 3ott_A          488 LLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS--NN  559 (758)
T ss_dssp             EETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC-----C
T ss_pred             EccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--cc
Confidence            344445588899887764432211   1346888888888877764 4555 8888877654222   11 11111  13


Q ss_pred             CceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEe-cCCCEEEEEeCCCcEEEEECC
Q 001358          938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       938 ~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      .|.++... +|.+.+++ ++.+..+|..+.+...--..  ...+....+. +||. |..|+.+|-+ .++..
T Consensus       560 ~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~-~f~p~  625 (758)
T 3ott_A          560 EILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKEDC-VYLGGADGFG-ISHSN  625 (758)
T ss_dssp             CEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTTE-EEEECBSEEE-EEEC-
T ss_pred             ceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCCc-EEEecCCceE-EEChh
Confidence            57777764 66555444 55688889887654321111  1223334444 4665 5557777754 44543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.31  E-value=0.0011  Score=72.14  Aligned_cols=249  Identities=10%  Similarity=-0.032  Sum_probs=154.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~  476 (1092)
                      ...+|.+..++ .+|+.+.. ..|+..++.+....    .+.........++|.+.+.. ++++-...+.|..+++..+.
T Consensus        34 d~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TSSCEEESSSC-CEEEEECB-SCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred             CCCcccccccC-ceeEeecc-cceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence            34456666663 34544433 34888887764321    12223345789999987664 45555667889999987765


Q ss_pred             eeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       477 ~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      ....+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+......  ...
T Consensus       107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~  183 (349)
T 3v64_C          107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR  183 (349)
T ss_dssp             CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred             ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence            44433333334566777543 345666667778999999886655544444445678999999777777654311  367


Q ss_pred             EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCC
Q 001358          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT  635 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~  635 (1092)
                      |+..++...... .+....  ......++++|++..|+.+. ..+.|..+++........+...  ......+++ .++.
T Consensus       184 I~r~~~dG~~~~-~~~~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~  257 (349)
T 3v64_C          184 IEASSMDGSGRR-IIADTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDS  257 (349)
T ss_dssp             EEEEETTSCSCE-ESCCSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTE
T ss_pred             EEEEeCCCCCcE-EEEECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCE
Confidence            888887654332 222111  24578999998877776654 5678999998754443333322  223467777 4455


Q ss_pred             EEEEEeCCCeEEEEECCCCCeeeecc
Q 001358          636 LLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ++++-...+.|..++..+++....+.
T Consensus       258 ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          258 LYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEecCCCCeEEEEEccCCCccEEec
Confidence            66666667888888866665554443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.31  E-value=0.00077  Score=74.69  Aligned_cols=246  Identities=11%  Similarity=-0.038  Sum_probs=153.7

Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      .|.+..+ ..+|+.+.. ..|+..++.++....    +.........++|.+.+.. ++++-...+.|..+++..+....
T Consensus        80 ~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred             eECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence            3555555 345554433 458888887754322    2223345789999987664 45566677889999987765444


Q ss_pred             EEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       480 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..-..  ....|+.
T Consensus       153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r  229 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA  229 (386)
T ss_dssp             EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred             EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence            33323334456676533 34566666677889988887655444444444567899999988877766431  1367888


Q ss_pred             EeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE
Q 001358          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1092)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~  638 (1092)
                      .++............   ......++++|++..|+.+. ..+.|..+++........+...  ......+++ .++.+++
T Consensus       230 ~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~  303 (386)
T 3v65_B          230 SSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW  303 (386)
T ss_dssp             EETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred             EeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence            887654333322221   24578999998777776654 5678999998754443333322  223467777 4456666


Q ss_pred             EEeCCCeEEEEECCCCCeeeecc
Q 001358          639 VIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      +-...+.|..++..+++....+.
T Consensus       304 td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          304 TDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEE
T ss_pred             eeCCCCeEEEEECCCCcceEEEc
Confidence            66677888888866665555544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.26  E-value=0.0019  Score=69.28  Aligned_cols=232  Identities=9%  Similarity=-0.062  Sum_probs=140.3

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCC---CCcc
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR  432 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~---~~~~  432 (1092)
                      ..|+..|+.+++....                   + .....+..++|++++..|..+ ...+.|..+++.+.   ....
T Consensus        10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            6789999887764431                   1 134567899999977666655 45688999998762   2122


Q ss_pred             ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecC-CeE
Q 001358          433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI  511 (1092)
Q Consensus       433 ~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-g~i  511 (1092)
                      .  .+...-.....+++.+.+.. ++++-...+.|.+.|.+.......+.........+++.+. ++.++++.... +.|
T Consensus        70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI  145 (316)
T ss_dssp             E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred             E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence            1  12222235678999876654 4556667889999997754433333333455678888543 33444444333 678


Q ss_pred             EEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCC
Q 001358          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       512 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1092)
                      ...+++...........-.....+++++++..|+.+-.   ..+.|..+|...... +.+............+++. .+.
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~  220 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK  220 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred             EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence            88887654433333333456789999999888877643   256799999874333 3332211012345677774 344


Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          592 QILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      .+++-...+.|..++..+++.+..+.
T Consensus       221 ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCcceEEEe
Confidence            44455567788888887776655553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.26  E-value=0.00018  Score=87.60  Aligned_cols=246  Identities=6%  Similarity=-0.055  Sum_probs=133.6

Q ss_pred             CCCC-cEEEEEEC-CCCCEEEEEeC-C----CEEEEEEccCC-CCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-
Q 001358          394 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-  464 (1092)
Q Consensus       394 ~h~~-~V~~l~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-  464 (1092)
                      +|.. .+...+|| |||++||.+.. +    .+|+++|+.+| +.+..  .+.   .....++|+|||+.  |+....| 
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~  242 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE  242 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence            3443 78899999 99999997643 2    35999999998 64321  111   12457899999985  3333333 


Q ss_pred             ----CcEEEEECCCCce--eEEEec-CCcceEEEeecccCCccEEEEEec---CCeEEEEEcCCCC-ce--EEe-cCCCC
Q 001358          465 ----KTIKVWDAVTGSR--TYSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDY-DAPGL  530 (1092)
Q Consensus       465 ----~~i~vwd~~~~~~--~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~-~~--~~~-~~~~~  530 (1092)
                          ..|.++++.++..  ...+.. .......+.+  ++||++|+..+.   ...|.++|+.+.. ..  ..+ .....
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~  320 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG  320 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence                3688889887753  223322 2233445556  567777776553   3357888887653 22  223 22333


Q ss_pred             ceEEEEEecCCCEEEEEecCC-CCceeEEEEeCCCCeEEEE-EeeccccCCceEEEEEcCCCCEE-EEEeCCCe--EEEE
Q 001358          531 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW  605 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~--i~iw  605 (1092)
                      ...++.|+ +|+.|+..+... .+...|+.+|..++..... +..+. ....+..+.+.  ++.+ ++...++.  |+++
T Consensus       321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred             ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence            44444443 366666555432 3466788899875322222 22222 01234555554  4444 55666775  4555


Q ss_pred             EC-------CCCceEEEEeCCCCCCCCceEEE------ccCCCE-EEEEeCC---CeEEEEECCCCC
Q 001358          606 DM-------NKVQLLTTIDAGGGLPENPRICF------NKNGTL-LAVIANE---NRIKILETPESN  655 (1092)
Q Consensus       606 d~-------~~~~~~~~~~~~~~~~~v~~v~~------s~~~~~-l~~~~~d---g~i~iw~~~~~~  655 (1092)
                      ++       .+++....+.....   ...+.+      ++++.. +++.+..   +.+..+++.+++
T Consensus       397 dl~~~~~~~~~g~~~~~l~l~~~---~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          397 MADSQDGVFKAGTGLREVVMEEP---IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             ECCTTTSCCCTTTCCEECCCCCS---SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             ecccccccccCCccceEECCCCc---eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            65       34441344433221   223344      345543 3333332   456667766553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.26  E-value=0.001  Score=67.64  Aligned_cols=217  Identities=12%  Similarity=0.122  Sum_probs=134.4

Q ss_pred             EecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc-ccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001358          838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1092)
Q Consensus       838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~  916 (1092)
                      .+.+-...+..++++|+++.+.++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4555556899999999555666678889999999998 887777642 22568889999999877776677889999987


Q ss_pred             CCce-eeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEe-CCcEEEEEcCC---ceeeeee------ccCCCcCEEEEE
Q 001358          917 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEE---LTCLKQW------FPISSVPISQAT  985 (1092)
Q Consensus       917 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-d~~v~lwd~~~---~~~~~~~------~~~h~~~v~~l~  985 (1092)
                      .... ..........+..........++++|+++.|.++. .....||.+..   ...+...      ...+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            6542 11122221111111223578999999997777643 33445555431   1111111      011344678999


Q ss_pred             EecCC-CEEEEEeCCCcEEEEECCCCceEEeecccc-ccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEec
Q 001358          986 FSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus       986 fs~dg-~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      |.|.. ++++.......+.++|.. |+.+..+.... ....  ....-.+--++++| +++ |...+.-+.++++.-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECT-TCC-EEEEETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECC-CCC-EEEEcCCceEEEEEe
Confidence            99854 555666666788899976 55665555332 1000  01112346789999 466 445577776666654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.22  E-value=0.0023  Score=71.12  Aligned_cols=240  Identities=10%  Similarity=-0.028  Sum_probs=150.6

Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~  485 (1092)
                      +|+.+. ...|+..++.+.....    +......+..++|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~----~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEec-cceeEEEccCCcceeE----eccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            455443 4568888888754322    2234556889999987664 4555556788999998752    2223333234


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+.+|+..-..  ....|+..++...
T Consensus       159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~  235 (400)
T 3p5b_L          159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  235 (400)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred             CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence            45667777543 34566666778899999988665555554444567899999977777665421  1356888887654


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .........   -.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            433333322   25678999999888887765 5678999998765544444432222334566663 345556666678


Q ss_pred             eEEEEECCCCCeeeeccc
Q 001358          645 RIKILETPESNSVDAAGV  662 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~  662 (1092)
                      .|..++..+++....+..
T Consensus       312 ~V~~~~~~~G~~~~~i~~  329 (400)
T 3p5b_L          312 AIFSANRLTGSDVNLLAE  329 (400)
T ss_dssp             SEEEEESSSCCCCEEEEC
T ss_pred             eEEEEEcCCCCceEEEec
Confidence            888888777765555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.15  E-value=0.0043  Score=66.86  Aligned_cols=281  Identities=12%  Similarity=0.033  Sum_probs=148.2

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ..+.+|.|.+++. ++++|. .+.| +...+.|+.=......               .......+.+++|++ +..++ +
T Consensus        36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~~---------------~~~~~~~~~~i~~~~-~~~~~-~   95 (327)
T 2xbg_A           36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTLV---------------LDHSDYRFNSVSFQG-NEGWI-V   95 (327)
T ss_dssp             SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCCC---------------CSCCCCEEEEEEEET-TEEEE-E
T ss_pred             CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCCC---------------CCCCCccEEEEEecC-CeEEE-E
Confidence            4799999988887 566654 4543 3333444321110000               112345788999986 44444 4


Q ss_pred             eCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE-EecCCcceEEEee
Q 001358          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP  493 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~i~~  493 (1092)
                      +..+.|.. ....|+..........+.+.+..+.+.+++.  +++.+ .++.|.. ..+.|+.-.. ...+...+..+++
T Consensus        96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred             ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence            45664433 3444544332211112345577888877776  45544 4665433 2233433222 2344556778877


Q ss_pred             cccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358          494 HAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      .+  ++.+++.+...+..+-+|-. +.. ..........+..+++.++++.++.+.     .+.+++.+...|+....+.
T Consensus       171 ~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~  242 (327)
T 2xbg_A          171 SP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL  242 (327)
T ss_dssp             CT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred             cC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence            54  55666655443333333321 111 111123345788899999988766542     3446665433344333332


Q ss_pred             ec-cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-CCCCCCceEEEccCCCEEEEEeCCCeEEEEE
Q 001358          573 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       573 ~~-~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      .. ......+..+.+.+++..+++ +.+|.+ .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++
T Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            21 001235888999887665554 456766 4555556554444421 1123578898876554 66667788777665


Q ss_pred             C
Q 001358          651 T  651 (1092)
Q Consensus       651 ~  651 (1092)
                      -
T Consensus       320 ~  320 (327)
T 2xbg_A          320 T  320 (327)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.14  E-value=0.0005  Score=77.30  Aligned_cols=248  Identities=11%  Similarity=0.047  Sum_probs=143.5

Q ss_pred             CeeEEEEecC--CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC---C-eEEEEEcCCc
Q 001358          804 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS  876 (1092)
Q Consensus       804 ~v~~~~~s~d--g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~~  876 (1092)
                      ....++++|+  +..|.++. .+.|+.+|..++..... .........+++++ +++++++....   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            4568999984  44454454 48899999987766544 33556789999999 77754443321   1 2333333222


Q ss_pred             eee-EeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358          877 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       877 ~~~-~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      ... ..+. .......+++.| +|.++++-..++.|+.++..++.... ........     .....++|+|+|+.|.++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~~-----~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDTK-----GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCCC-----CCcccEEEeCCCCEEEEE
Confidence            110 1111 233456688999 67777666677889999988665411 11111111     124579999999966664


Q ss_pred             --eCCcEEEEEcC--Cceee--eeecc-----C---------CCcCEEEEEE---------ecCCCEEEEEeCCCcEEEE
Q 001358          955 --HETHLAIYEAE--ELTCL--KQWFP-----I---------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1005 (1092)
Q Consensus       955 --~d~~v~lwd~~--~~~~~--~~~~~-----~---------h~~~v~~l~f---------s~dg~~l~t~s~Dg~i~vw 1005 (1092)
                        ..+.|..++..  ++...  ..+..     +         .-.....+++         .++|.++++-...++|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              45679888765  23211  11110     0         1124677999         7778777777777889999


Q ss_pred             ECCCCceEEeecccc-----ccCC-CC-ccCcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1006 EASNLEVQCRILSTA-----YLRP-TT-SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1006 d~~~~~~~~~~~~~~-----~~~~-~~-~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      +. +|..........     +... .. ...--.|..++++|.++.++++=...+.|+.+++.
T Consensus       371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            85 564432221100     0000 00 00112467899995456666666667788888763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.14  E-value=0.00053  Score=77.11  Aligned_cols=246  Identities=12%  Similarity=0.040  Sum_probs=142.0

Q ss_pred             CeeEEEEec-CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeC-CC----eEEEEEcCCc
Q 001358          804 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS  876 (1092)
Q Consensus       804 ~v~~~~~s~-dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~~  876 (1092)
                      ....++++| ++..|.++. .+.|+.+|..++...... ........++|++ ++++|+++.. ++    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            456889998 455565555 478999999876654433 3456688999999 7885555554 22    3444443 33


Q ss_pred             eee--EeeccccCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358          877 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       877 ~~~--~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      ...  ..+. .......++++| +|.++++-..++.|..++..++....  .......     .....++|+|+|++|.+
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            222  2222 123456789999 67777776678889999998754321  1222111     24678999999996665


Q ss_pred             E--eCCcEEEEEcCC--cee--eeeecc-----C---------CCcCEE-EEEEe--------cCCCEEEEEeCCCcEEE
Q 001358          954 V--HETHLAIYEAEE--LTC--LKQWFP-----I---------SSVPIS-QATFS--------CDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       954 ~--~d~~v~lwd~~~--~~~--~~~~~~-----~---------h~~~v~-~l~fs--------~dg~~l~t~s~Dg~i~v 1004 (1092)
                      +  ..+.|..++...  +..  +..+..     +         .-.... .++..        ++|.++++-...++|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  557888887653  221  111110     0         011233 45553        34666666566678998


Q ss_pred             EECCCCceEEeecccc--ccC--CC--Ccc-CcccceEEEECCCCCCEEEEEeCCCcEEEEecC
Q 001358         1005 HEASNLEVQCRILSTA--YLR--PT--TSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1061 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~--~~~--~~--~~~-~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~ 1061 (1092)
                      ++ .+|..........  ...  .+  ... .--.|..++++|+++.++++-...+.|+.+++.
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            88 4565443332100  000  00  000 112577899998545566665566788887763

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.01  E-value=0.0087  Score=66.41  Aligned_cols=250  Identities=8%  Similarity=-0.061  Sum_probs=149.9

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-C
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-S  416 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~  416 (1092)
                      .|.+..+.. +++.+.  ...|+..++.+.....                    +...-..+..++|++.+..|..+. .
T Consensus        76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~  132 (400)
T 3p5b_L           76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS  132 (400)
T ss_dssp             SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred             ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence            344443333 344443  3678888888765432                    122446788999999766666654 5


Q ss_pred             CCEEEEEEccCCCCc-cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          417 KHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      .+.|+.+++.+.... .....+.........+++.+.+.. ++++-...+.|.+.+++.......+.........+++.+
T Consensus       133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp  211 (400)
T 3p5b_L          133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP  211 (400)
T ss_dssp             TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred             CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence            678999998763210 111122223446778999885554 556666778999999876654444443445567888865


Q ss_pred             cCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec
Q 001358          496 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1092)
Q Consensus       496 ~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1092)
                      . ++.++++-.. .+.|...+++...........-.....+++++++..|+.+-.   ....|..+|.............
T Consensus       212 ~-~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~  287 (400)
T 3p5b_L          212 V-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE  287 (400)
T ss_dssp             T-TTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred             c-cCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence            4 3334444323 477888888765554444444456789999999888887743   2567999998654443333321


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q 001358          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      . .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus       288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            1 11345566663 23344455566788888877777666654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0026  Score=71.43  Aligned_cols=239  Identities=13%  Similarity=0.072  Sum_probs=135.4

Q ss_pred             CceEEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE
Q 001358          336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1092)
Q Consensus       336 ~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~  414 (1092)
                      ....++++| ++..|.++-.. +.|+.+|..++....                    +.........++|+++|++|.++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva  196 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT  196 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence            568999998 34445554433 788999988765432                    22244678899999999977666


Q ss_pred             eCC----C-EEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcc
Q 001358          415 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP  487 (1092)
Q Consensus       415 ~~d----~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~  487 (1092)
                      ...    . .+.+.+.. +.... ...+. .......++++| ++.  ++++-..++.|..++..++........ ....
T Consensus       197 d~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~  271 (430)
T 3tc9_A          197 NDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW  271 (430)
T ss_dssp             ECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred             eCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence            542    2 34444443 33221 11222 123456788999 565  666666788999999887664322221 2234


Q ss_pred             eEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceE-EEEEe--------
Q 001358          488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCT-RMAYS--------  538 (1092)
Q Consensus       488 v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~-~~~~s--------  538 (1092)
                      ...+++++  ++. ++++-...+.|..++.+....    ...+...               -.... .++..        
T Consensus       272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D  349 (430)
T 3tc9_A          272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSS  349 (430)
T ss_dssp             CEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSS
T ss_pred             ceeEEEcC--CCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccC
Confidence            66788854  666 555556778899988764311    1111110               00122 45553        


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeec---------c------ccCCceEEEEEcCC-CCEEEEEeCCCeE
Q 001358          539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------Q------LQHNSVSVVHFDTA-KDQILAAGDDHVI  602 (1092)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------~------~~~~~v~~~~~~~~-~~~l~~~s~dg~i  602 (1092)
                      ++|...++-.    +.+.|+.++. +|... .+.+.         .      ..-.....+++.|+ +..+++-..++.|
T Consensus       350 ~~g~lyvaD~----~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rI  423 (430)
T 3tc9_A          350 DEYDFYFCDR----ENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRI  423 (430)
T ss_dssp             CCEEEEEEEG----GGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEE
T ss_pred             CCCeEEEEEC----CCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence            2344444332    2567888884 45433 33332         0      00125788999985 4444444456777


Q ss_pred             EEEECC
Q 001358          603 KIWDMN  608 (1092)
Q Consensus       603 ~iwd~~  608 (1092)
                      +.++++
T Consensus       424 r~i~~e  429 (430)
T 3tc9_A          424 RKIGYE  429 (430)
T ss_dssp             EEEEEC
T ss_pred             EEEccC
Confidence            777653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.97  E-value=0.0019  Score=72.48  Aligned_cols=238  Identities=16%  Similarity=0.090  Sum_probs=136.2

Q ss_pred             CceEEeecCC---CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE
Q 001358          336 SPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1092)
Q Consensus       336 ~V~~v~~spd---g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la  412 (1092)
                      ....++|+|+   |. |.++-.. +.|+.+|..++....                    +.+....+..++|+++|++++
T Consensus       140 ~P~gvavd~~s~~g~-Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDD-LYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             CCCEEEECTTTTTCE-EEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred             CCceEEEccccCCCE-EEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence            5779999995   55 4444333 889999988776543                    222445689999999999444


Q ss_pred             EEeCC---C-EEEEEEccCCCCccceEEecccccceeEEEeeC-CCCcEEEEEEeCCCcEEEEECCCCceeEEE-ec-CC
Q 001358          413 VAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-HG  485 (1092)
Q Consensus       413 s~~~d---~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~-~~  485 (1092)
                      +....   . .+...+...+....  ..+. .-.....+++.| +|.  ++++-..++.|+.+|..++.....+ .. ..
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence            43311   2 24444443322111  1121 223456788999 666  5666667788999998878763333 21 12


Q ss_pred             cceEEEeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceEEEEE--------
Q 001358          486 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY--------  537 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~i~~~~~--------  537 (1092)
                      ..-..+++++  ++. +.++-...+.|+.++++....    ...+.+.               -.....+++        
T Consensus       273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~  350 (433)
T 4hw6_A          273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG  350 (433)
T ss_dssp             SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred             CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence            2234577754  556 555556678899988763211    1111110               113567888        


Q ss_pred             -ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc---------------cCCceEEEEEc-CCCCEEEEEeCCC
Q 001358          538 -SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDH  600 (1092)
Q Consensus       538 -s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~s~dg  600 (1092)
                       .++|...++-.    +.+.|+.++. +|.. .++.+...               .-.....+++. +++..+++-..++
T Consensus       351 dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~  424 (433)
T 4hw6_A          351 EEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH  424 (433)
T ss_dssp             SSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred             cCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence             56666555533    2567888885 5543 34433210               01346778888 4554444445666


Q ss_pred             eEEEEECC
Q 001358          601 VIKIWDMN  608 (1092)
Q Consensus       601 ~i~iwd~~  608 (1092)
                      .|+.++++
T Consensus       425 rIr~i~~e  432 (433)
T 4hw6_A          425 RVRKIAPE  432 (433)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecC
Confidence            77777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.96  E-value=0.012  Score=62.82  Aligned_cols=239  Identities=9%  Similarity=-0.027  Sum_probs=146.3

Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee-EEEecCCcce
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV  488 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~~~~~v  488 (1092)
                      +|+.+ ....|+..++.+....... .+. ......+++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~-~~~-~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATI-VVG-GLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEE-EEE-EEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEE-Eec-CCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            34443 3456899999876411111 122 2335678999986654 5556667788999998776422 2222222345


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1092)
                      ..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+.....  ....|+..++..... 
T Consensus        82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~-  157 (318)
T 3sov_A           82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR-  157 (318)
T ss_dssp             CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSC-
T ss_pred             cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCe-
Confidence            56776532 44566666677899999987655444444444567899999987777665421  245688888764332 


Q ss_pred             EEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEE
Q 001358          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1092)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~  647 (1092)
                      ..+....  -.....+++++++..|+.+. ..+.|..+|+...........  .......+++.. +.++.+-...+.|.
T Consensus       158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~  232 (318)
T 3sov_A          158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL  232 (318)
T ss_dssp             EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence            2222111  24578999999877776654 678899999875443333321  123346677753 45555656678899


Q ss_pred             EEECCCCCeeeecc
Q 001358          648 ILETPESNSVDAAG  661 (1092)
Q Consensus       648 iw~~~~~~~~~~~~  661 (1092)
                      .++..+++....+.
T Consensus       233 ~~~~~~G~~~~~i~  246 (318)
T 3sov_A          233 ACNKYTGEGLREIH  246 (318)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCCceEEEe
Confidence            99887776544443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.89  E-value=0.012  Score=70.79  Aligned_cols=238  Identities=10%  Similarity=-0.025  Sum_probs=146.7

Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCC----ceeEEEecCC
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~  485 (1092)
                      +|+.+. ...|+..++......    .+......+..++|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence            444443 344788888765422    22234456789999986664 5556666788999998753    2223333234


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      .....|++.+. .+.++++-...+.|.+.+++.......+.........|++.|.+.+|+..-..  ....|...++...
T Consensus       471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~  547 (791)
T 3m0c_C          471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  547 (791)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence            45667777543 33566677778899999998665555444444568899999987777765421  1256888888655


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .....+...   ......|++.+.+..|+.+. ..+.|...++........+...........+++.. +.++++-...+
T Consensus       548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~  623 (791)
T 3m0c_C          548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE  623 (791)
T ss_dssp             CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred             ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence            443333322   25688999998877777764 56789999987665555554333223334566532 34444445567


Q ss_pred             eEEEEECCCCCeeeec
Q 001358          645 RIKILETPESNSVDAA  660 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~  660 (1092)
                      .|...+..++..+..+
T Consensus       624 ~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          624 AIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTTCCCCEEE
T ss_pred             EEEEEeCCCCcceEEe
Confidence            8888887766554444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.89  E-value=0.01  Score=63.42  Aligned_cols=233  Identities=12%  Similarity=0.005  Sum_probs=141.5

Q ss_pred             cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-eCCCEEEEEEccCCCCccce
Q 001358          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       356 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~  434 (1092)
                      ...|+..++.+........                 .. ....+..++|.+.+..|..+ ...+.|..++..++..... 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-   72 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-   72 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred             cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence            3678999988764221100                 11 12356789999965555554 4567899999887642221 


Q ss_pred             EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEe--cCCeEE
Q 001358          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK  512 (1092)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~--~dg~i~  512 (1092)
                       .+...-.....+++.+.+.. ++++-...+.|.+++++.......+.........+++.+. ++ .|+.+.  ..+.|.
T Consensus        73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~-~g-~ly~td~~~~~~I~  148 (318)
T 3sov_A           73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS-SG-FMYWTDWGEVPKIE  148 (318)
T ss_dssp             -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG-GT-EEEEEECSSSCEEE
T ss_pred             -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC-CC-EEEEEecCCCCEEE
Confidence             12222235678999876554 5556666789999997654333333334455678888653 23 444443  357788


Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001358          513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  592 (1092)
Q Consensus       513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  592 (1092)
                      ..+++...........-.....+++++++..|+.+-.   ..+.|..+|...........+..   .....+++.. +..
T Consensus       149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l  221 (318)
T 3sov_A          149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL  221 (318)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred             EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence            8887754444333333446689999998888877643   35679999986543322222222   4556777753 334


Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEeC
Q 001358          593 ILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.+-...+.|..++..+|+....+..
T Consensus       222 ywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          222 YWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEEecCCCeEEEEECCCCCceEEEeC
Confidence            44555678888899877776665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.83  E-value=0.0071  Score=63.76  Aligned_cols=197  Identities=12%  Similarity=0.157  Sum_probs=125.6

Q ss_pred             CCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCC---CCC---EEEEEeC---CCeEEEEEcC--CceeeEe
Q 001358          814 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGMD---DSTILIYNAR--SSEVISK  881 (1092)
Q Consensus       814 g~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~~---dg~v~iwd~~--~~~~~~~  881 (1092)
                      ..+++... .+.+.+||+ +|+.++.+..  +.+..+.+-|.   +++   ++++...   +++|.+|++.  +++ +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            34444333 578999999 8888888853  56777766651   111   2333333   5799999773  333 444


Q ss_pred             ecc------cc-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCC---CceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358          882 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       882 l~~------h~-~~V~~l~~--spd-g~-~l~s~s~Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      +..      .. ..+..+++  +|. ++ +++....+|.+..|++..   +.. ..+.++.+.-.    +.+..++..+.
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd~  190 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADDE  190 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEETT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcCC
Confidence            421      11 56677888  775 44 577788899999999843   222 23334433222    25889999999


Q ss_pred             CCEEEEEeCC-cEEEEEcC-----CceeeeeeccCC-CcCEEEEEE--ecCCC-EEEEEe-CCCcEEEEECC-CCceEEe
Q 001358          948 QTRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1015 (1092)
Q Consensus       948 g~~la~~~d~-~v~lwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~s-~Dg~i~vwd~~-~~~~~~~ 1015 (1092)
                      ...|.++.+. .|..|+.+     +++.+..+-.++ ...+..|++  .++|+ ||++++ .+.+..+||.. +.+.+.+
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            8888887554 45556644     344554432333 347888887  56666 666666 56799999997 7888888


Q ss_pred             eccc
Q 001358         1016 ILST 1019 (1092)
Q Consensus      1016 ~~~~ 1019 (1092)
                      |...
T Consensus       271 f~Ig  274 (355)
T 3amr_A          271 FRIT  274 (355)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8633

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.0058  Score=68.49  Aligned_cols=250  Identities=11%  Similarity=0.120  Sum_probs=142.1

Q ss_pred             cEEEEEECC-CCCEEEEEe-CCCEEEEEEccCCCCccceEEec-ccccceeEEEe-------eCCCCcEEEEEEeCCC--
Q 001358          398 SVNRVVWSP-DGSLLGVAY-SKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK--  465 (1092)
Q Consensus       398 ~V~~l~~sp-dg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~-------s~d~~~l~l~s~~~d~--  465 (1092)
                      ....|+|+| ++..|.++. ..+.|++.|.+++.... +.... ........++|       ++++++  |+.+...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence            577899999 455555554 44678889988764322 11111 12235889999       999984  44443332  


Q ss_pred             -----cEEEEECCC-Ccee-----EEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001358          466 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------  521 (1092)
Q Consensus       466 -----~i~vwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~------  521 (1092)
                           .|.+.+... |...     ..+.... ....+++++. ++.++++-..++.|..+|+.       ++..      
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                 266666443 2221     2232212 2345566442 45667777788899999987       4432      


Q ss_pred             -----e-EEe-cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC--CCCeE--EEEEeecc------------ccC
Q 001358          522 -----R-VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAI--KRTYQGLQ------------LQH  578 (1092)
Q Consensus       522 -----~-~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~~------------~~~  578 (1092)
                           . ..+ .........++|+|+|+.|+.+-.   ..+.|+.++.  .++..  ...+.+..            ..-
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence                 0 111 122345678999999997666532   2567888554  34432  13333321            001


Q ss_pred             CceE-EEEEc-------CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC----------------------CCCCCceE
Q 001358          579 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI  628 (1092)
Q Consensus       579 ~~v~-~~~~~-------~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v  628 (1092)
                      .... .++..       +++..+++-..+..|+.++ .+|. +.++...+                      .......+
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            2234 45554       4566666666788999998 4554 44443221                      01224578


Q ss_pred             EEccC-CCEEEEEeCCCeEEEEECCCCCee
Q 001358          629 CFNKN-GTLLAVIANENRIKILETPESNSV  657 (1092)
Q Consensus       629 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~  657 (1092)
                      +++++ |.++++=..++.|+.+++......
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            89986 766666666788998888765433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.78  E-value=0.026  Score=67.92  Aligned_cols=251  Identities=9%  Similarity=-0.038  Sum_probs=149.1

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEE-
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-  414 (1092)
                      .-+|.+..+.. +|+.+  ....|+..++.......                    +......+..|+|.+.+..|..+ 
T Consensus       386 ~~~C~~~~~~p-~Ll~a--n~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD  442 (791)
T 3m0c_C          386 TKACKAVGSIA-YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSD  442 (791)
T ss_dssp             CCCCEETTSCC-EEEEE--CBSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEE
T ss_pred             Cceeeeccccc-ccccc--cccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEee
Confidence            33455544433 23333  23567777777654332                    22234567899999966655554 


Q ss_pred             eCCCEEEEEEccCCCCc-cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEee
Q 001358          415 YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1092)
Q Consensus       415 ~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~  493 (1092)
                      ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++........+.........|++
T Consensus       443 ~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaV  521 (791)
T 3m0c_C          443 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV  521 (791)
T ss_dssp             TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred             ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEE
Confidence            45678999998753210 111123334456778999988865 5566667889999998755443334444455788888


Q ss_pred             cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358          494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       494 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      .+. .+.++++-... +.|.+.+++...........-.....|++.+.+..|+.+-.   +...|...++........+.
T Consensus       522 Dp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~  597 (791)
T 3m0c_C          522 DPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILE  597 (791)
T ss_dssp             ETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEE
T ss_pred             ecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEec
Confidence            654 23344443333 67888888765555454444457889999988888877643   25679999986554444443


Q ss_pred             eccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEe
Q 001358          573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID  617 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~  617 (1092)
                      ... ......++++.  +.+|+.+ ...+.|...|..+|+.+..+.
T Consensus       598 ~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          598 DEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             CTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence            321 11234556653  3355544 466778888877776665554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.016  Score=64.85  Aligned_cols=253  Identities=14%  Similarity=0.118  Sum_probs=142.8

Q ss_pred             CceEEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE-------CCC
Q 001358          336 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-------SPD  407 (1092)
Q Consensus       336 ~V~~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~-------spd  407 (1092)
                      ....|+|+| ++..|+++....+.|++.|..++........                -...-.....++|       +++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~----------------~~~~~~~p~~ia~~~~~~~~d~~  203 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI----------------NTIPTNRIRSIAFNKKIEGYADE  203 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC----------------TTSSCSBEEEEEECCCBTTTBCT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc----------------CccccCCCcEEEEeecccccCCC
Confidence            467899999 4554666665557788899887765432100                0112246899999       999


Q ss_pred             CCEEEEEeCCC-------EEEEEEccC-CCCcc-c-eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC----
Q 001358          408 GSLLGVAYSKH-------IVQLYAYHG-GSDAR-Q-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV----  473 (1092)
Q Consensus       408 g~~las~~~d~-------~i~iwd~~~-~~~~~-~-~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~----  473 (1092)
                      |++|+++...+       .|.+.+... |.... . ...+... .....++++|++.. ++++-..++.|..+|++    
T Consensus       204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~-LYvtd~~~g~V~r~d~~~~~~  281 (496)
T 3kya_A          204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGE-LYFNSYEKGQVFRLDLVDYFK  281 (496)
T ss_dssp             TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCC-EEEEETTTTEEEEECHHHHHH
T ss_pred             CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCe-EEEEECCCCEEEEEecccccc
Confidence            99777765543       366666444 22221 0 0122211 23457788996554 56667778889999987    


Q ss_pred             ---CCce-----------eEE-Ee-cCCcceEEEeecccCCccE-EEEEecCCeEEEEEcCCCCce----EEecCC---C
Q 001358          474 ---TGSR-----------TYS-FE-GHGAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGAR----VDYDAP---G  529 (1092)
Q Consensus       474 ---~~~~-----------~~~-~~-~~~~~v~~i~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~----~~~~~~---~  529 (1092)
                         ++..           ... +. +.......++|++  ++.+ .++-+....|+.++.+.....    ..+.+.   .
T Consensus       282 ~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~  359 (496)
T 3kya_A          282 TIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQS  359 (496)
T ss_dssp             HHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBC
T ss_pred             cccCceeecccccccccccceeEecCCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCC
Confidence               5553           122 21 2234457788854  5664 555566788988776543211    111110   0


Q ss_pred             ------------CceE-EEEEe-------cCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc-------------
Q 001358          530 ------------LGCT-RMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-------------  576 (1092)
Q Consensus       530 ------------~~i~-~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-------------  576 (1092)
                                  .... .++..       ++|...++-..    ..+|+.++ .+| .+.++.+...             
T Consensus       360 G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~----N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~  433 (496)
T 3kya_A          360 GYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL----NFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTD  433 (496)
T ss_dssp             CCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG----GTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCC
T ss_pred             cccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC----CCEEEEEe-CCC-CEEEEecccccccccCccccccC
Confidence                        1233 45554       44554444332    66799998 455 3455544310             


Q ss_pred             --------cCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceEE
Q 001358          577 --------QHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       577 --------~~~~v~~~~~~~~-~~~l~~~s~dg~i~iwd~~~~~~~~  614 (1092)
                              .-.....+++.++ +..+++=..+..|+.++++......
T Consensus       434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence                    0134567888886 5544555567778888776654443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.73  E-value=0.0073  Score=63.70  Aligned_cols=194  Identities=12%  Similarity=0.132  Sum_probs=121.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccC--Ccc---EEEEE-ec--CCeEEEEEcCCCC-ceEEecC
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSI-SV--DGKIKAWLYDSLG-ARVDYDA  527 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~---~l~s~-~~--dg~i~vwd~~~~~-~~~~~~~  527 (1092)
                      +++.....+-+.+||+ +|+.++.+..  +.++.+.+.+.-  +++   ++++. -.  +++|++|+++... ....+..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            4666667788999998 9999988864  456666554310  111   22333 33  5789999885322 2333321


Q ss_pred             ------CC-CceEEEEE--ecC-CC-EEEEEecCCCCceeEEEEeC-------CCCeEEEEEeeccccCCceEEEEEcCC
Q 001358          528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1092)
Q Consensus       528 ------~~-~~i~~~~~--s~d-g~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1092)
                            .. ..+..+|+  +|. ++ ++++...    ++.+..|++       .+.+.++++...    ..+..|...+.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~  190 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence                  11 45667777  674 44 3444433    456777777       234566666653    47889999999


Q ss_pred             CCEEEEEeCCCeEEEEECC-----CCceEEEEeCCCCCCCCceEEE--ccCCC-EEEEEe-CCCeEEEEECC-CCCeeee
Q 001358          590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA  659 (1092)
Q Consensus       590 ~~~l~~~s~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~  659 (1092)
                      ..+|+.+-++..|..++.+     +++.+..+....-...+..+++  .++++ +|++.+ .+.++.+|+.. +.+.+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            9999999999877777755     3445555433222234677777  45555 666666 57899999996 4454544


Q ss_pred             cc
Q 001358          660 AG  661 (1092)
Q Consensus       660 ~~  661 (1092)
                      +.
T Consensus       271 f~  272 (355)
T 3amr_A          271 FR  272 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.65  E-value=0.0066  Score=63.42  Aligned_cols=202  Identities=12%  Similarity=0.090  Sum_probs=124.6

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEE-ecC----CC--CCeEEEEE---cCCCCCEEEEEeC-------
Q 001358          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGMD-------  864 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~~-------  864 (1092)
                      -..++.|.+....+..++  .++|..||...+..... +..    ..  ..+..+.+   .| +++++++...       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence            345788988666666665  79999999986544333 222    11  13578999   68 6777776442       


Q ss_pred             ------CCeEEEEEcC---CceeeEeec--ccc-----------CCeEEEEEcCCCCEEEEEeCC-CcEEEEEcCCCcee
Q 001358          865 ------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ  921 (1092)
Q Consensus       865 ------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spdg~~l~s~s~D-g~i~iwd~~~~~~~  921 (1092)
                            +..|..||+.   +++.+....  +..           .....++..++|+..++++.- +.|...+.+.... 
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-  171 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-  171 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE-
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE-
Confidence                  6789999999   787664443  211           247889999999999999887 7766666554322 


Q ss_pred             eeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eCCcEEEEEcCCcee--eeeeccCC---CcCEEEE-EEecCCCE-E
Q 001358          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V  993 (1092)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d~~v~lwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l  993 (1092)
                      ....+.......  ......+++.|||..|++. ..+.+..+|+.+...  +..-..+.   -.....+ .--.+|+. |
T Consensus       172 ~~~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          172 STFAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             EEEEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             eeeeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence            111122211111  1246799999999988883 578899999885333  21100021   1233443 33357877 5


Q ss_pred             EEEeCCCcEEEEECCC
Q 001358          994 FTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       994 ~t~s~Dg~i~vwd~~~ 1009 (1092)
                      ++.+..+.+.+.+-+.
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            5555566655555544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.59  E-value=0.022  Score=61.92  Aligned_cols=226  Identities=12%  Similarity=0.082  Sum_probs=125.2

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCce-eeEEec---CCCCCeEEEEEcCCC---CCEEEEEeC----C----Ce
Q 001358          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPHD---NNVIAIGMD----D----ST  867 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~d---~~~lasg~~----d----g~  867 (1092)
                      .....++|.|||+++++-.+|.|++++ .+++ .+..+.   ........++++| +   +..|.+...    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHP-EFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCC-CCCcCCEEEEEEeccCCCCCcceE
Confidence            346789999999977776689999887 3454 222221   1235688999999 5   334444332    3    56


Q ss_pred             EEEEEcCCc-------eee-Eeec---cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee--
Q 001358          868 ILIYNARSS-------EVI-SKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ--  921 (1092)
Q Consensus       868 v~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~~~~--  921 (1092)
                      |..|+....       +.+ ..+.   .|.  ...|+|.|||.++++.+..             |.|.-.+.+. +..  
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~  183 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPAD  183 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTT
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCC
Confidence            777877654       111 2222   132  3579999999888875432             3344444332 100  


Q ss_pred             ----eeeeeecCCCCcCCCCCceEEEEec-CCCEEEEE--eCC--cEEEEEcCCce------------------eeeeec
Q 001358          922 ----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWF  974 (1092)
Q Consensus       922 ----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~--~v~lwd~~~~~------------------~~~~~~  974 (1092)
                          ......  .++.    ....++|+| +|++.++-  .+.  .|.+..  .+.                  .+..+-
T Consensus       184 npf~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~  255 (354)
T 3a9g_A          184 NPFPNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG  255 (354)
T ss_dssp             SSSTTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CCCCCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC
Confidence                000111  1111    356899999 67777762  222  244332  221                  111110


Q ss_pred             cCCCcCEEEEEEe-------cCCCEEEEEeCCCcEEEEECCCC-ceEEeeccccccCCCCccCcccceEEEECCCCCCEE
Q 001358          975 PISSVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1046 (1092)
Q Consensus       975 ~~h~~~v~~l~fs-------~dg~~l~t~s~Dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l 1046 (1092)
                      . .......++|.       .+|.++++....+.|...++... .......   .+..    ..-++..+++.| |+.++
T Consensus       256 ~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~ly  326 (354)
T 3a9g_A          256 S-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGIL  326 (354)
T ss_dssp             T-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEE
T ss_pred             C-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEE
Confidence            1 13467888883       67877777767778888888753 3321111   1111    112456788998 46666


Q ss_pred             EEEe
Q 001358         1047 AVGL 1050 (1092)
Q Consensus      1047 ~~~~ 1050 (1092)
                      ++..
T Consensus       327 v~~~  330 (354)
T 3a9g_A          327 ISTS  330 (354)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.59  E-value=0.00039  Score=83.34  Aligned_cols=234  Identities=9%  Similarity=-0.016  Sum_probs=135.2

Q ss_pred             CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCC----CceeEEEecCCcceEEEe
Q 001358          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC  492 (1092)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~i~  492 (1092)
                      .+.|+..++.+.+...    +......+..++|.+.+.. ++++-...+.|+.+++.+    ......+.........++
T Consensus       385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla  459 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA  459 (699)
T ss_dssp             TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred             ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence            3467788887654322    1122335678999987763 444445567899999875    222222211112334566


Q ss_pred             ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe
Q 001358          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1092)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1092)
                      +.+. ++.++++-...+.|.+++++.......+.........+++.|++.+|+.....  ..+.|+.+++..... ..+.
T Consensus       460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~  535 (699)
T 1n7d_A          460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV  535 (699)
T ss_dssp             CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred             EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence            6432 34555665667889999887655444433333455678999977766654321  125687777654322 2221


Q ss_pred             eccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEEC
Q 001358          573 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      ...  ......++++|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus       536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            111  2456789999987666655 4667899999875444433332222223456666554 45555566789999998


Q ss_pred             CCCCeeeeccc
Q 001358          652 PESNSVDAAGV  662 (1092)
Q Consensus       652 ~~~~~~~~~~~  662 (1092)
                      .+++.+..+..
T Consensus       613 ~~G~~~~~i~~  623 (699)
T 1n7d_A          613 LTGSDVNLLAE  623 (699)
T ss_dssp             TTEEEEECCCT
T ss_pred             cCCCceEEeec
Confidence            77766665543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.56  E-value=0.016  Score=63.07  Aligned_cols=228  Identities=11%  Similarity=0.079  Sum_probs=120.8

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCcee--eEEec---CCCCCeEEEEEcCCC---CCEEEEEeC-C-----CeEE
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD---NNVIAIGMD-D-----STIL  869 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d---~~~lasg~~-d-----g~v~  869 (1092)
                      ....++|.|||+++++-..|.|.+++  +++.  +..+.   ........++++| +   +..|+++.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence            46789999999977776679999998  3432  22221   1235678999999 6   334444333 2     6788


Q ss_pred             EEEcCCce-----e-eEeec---cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCCcee------
Q 001358          870 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------  921 (1092)
Q Consensus       870 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~~~~------  921 (1092)
                      .|+...+.     . +..+.   +.......++|.|||.+.++.+..             |.|.-++.+. ...      
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~  187 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL  187 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence            88877531     1 22233   111123579999999877775432             3444444432 100      


Q ss_pred             -----eeeeeecCCCCcCCCCCceEEEEec-CCCEEEE-EeCCcE------EEEEcCCce------------------ee
Q 001358          922 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL-VHETHL------AIYEAEELT------------------CL  970 (1092)
Q Consensus       922 -----~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~-~~d~~v------~lwd~~~~~------------------~~  970 (1092)
                           .......  ++.    ....++|+| +|.+.++ ...+.+      .|.-+..+.                  .+
T Consensus       188 ~~~~~~~~i~a~--G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          188 GRRGARPEVYSL--GHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TCTTSCTTEEEE--CCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCCCCCccEEEE--cCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                 0001110  111    256799999 6777666 222221      233333222                  11


Q ss_pred             eeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee-ccccccCCCCccCcccceEEEECCCCCCEEEEE
Q 001358          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1049 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~ 1049 (1092)
                      ..+  .+......++| .+|.++++....+.|...+++........ ....++..     .-++..+++.| |+.++++.
T Consensus       262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~  332 (352)
T 2ism_A          262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT  332 (352)
T ss_dssp             EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred             Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence            111  22345677888 57777776666677777777654311000 00011111     12456788888 46655554


Q ss_pred             e
Q 001358         1050 L 1050 (1092)
Q Consensus      1050 ~ 1050 (1092)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.55  E-value=0.00042  Score=83.06  Aligned_cols=205  Identities=9%  Similarity=0.010  Sum_probs=124.0

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC----ceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001358          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1092)
                      ..+..++|++.+..|..+.  .+.|+.+++.+    ......+.........+++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3456789998887777775  47899999875    22222222222345678888635666666566789999998865


Q ss_pred             eeeEeeccccCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358          877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                      .....+.........|++.|++.+|..+.. . +.|.+.++.......  .+..   ..   .....|+|+|++..|..+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~---~l---~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---NI---QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS---SC---SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC---CC---CCccEEEEeccCCEEEEE
Confidence            433333333345678899997655544432 2 678777776532111  1111   11   135689999987766664


Q ss_pred             --eCCcEEEEEcCCceeeeeecc--CCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 001358          955 --HETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       955 --~d~~v~lwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                        ..+.|..+++.... ...+..  ........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              45679999986432 222222  11233445566544 455555567889999998898876665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.51  E-value=0.12  Score=55.43  Aligned_cols=236  Identities=12%  Similarity=0.091  Sum_probs=145.5

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      .-.+|..+ ++|.-. ..++.|+|+++...++.+.+                    ..+|..=.|-.+. .|+-.+ +..
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~ta  126 (494)
T 1bpo_A           71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA  126 (494)
T ss_dssp             EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SSE
T ss_pred             eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CCe
Confidence            34567776 555543 57899999999888875432                    2467777776544 444443 446


Q ss_pred             EEEEEccCCCCccceEEecccc----cceeEEEeeCCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcceE
Q 001358          420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       420 i~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      |+-|++++.....  ..+..|.    ..|..-..++|.+++ +++|=      -.|.+.+|..+.+ .-+.+.||.....
T Consensus       127 VyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~  202 (494)
T 1bpo_A          127 VYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  202 (494)
T ss_dssp             EEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEE
T ss_pred             eEEecccCCCCch--hheecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeecccc-ccchheeeeeeeE
Confidence            9999998644332  2344443    357777788999963 33332      3467889996655 4567888887776


Q ss_pred             EEeecccCCcc-EEEEEecC---CeEEEEEcCCC---C-----ceEEecCC----CCceEEEEEecCCCEEEEEecCCCC
Q 001358          490 SLCPHAKENIH-FIFSISVD---GKIKAWLYDSL---G-----ARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       490 ~i~~~~~~~~~-~l~s~~~d---g~i~vwd~~~~---~-----~~~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .+.+...+... ++..+...   +.+++-++...   .     ....+..+    ..-..++..|+.-..++..+.    
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK----  278 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----  278 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----
Confidence            66554322222 33334332   78999988653   1     11111111    123456778887777777664    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~  610 (1092)
                      -|.++++|+.++.++..-+-..   ..|...+......-+++....|.|.--.++..
T Consensus       279 ~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            6789999999999987666544   56655555555555666666666555554443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.27  E-value=0.046  Score=59.30  Aligned_cols=236  Identities=11%  Similarity=0.104  Sum_probs=125.8

Q ss_pred             CeeEEEEecCCC-EEEEEeCCeEEEEEcCCceeeEE---e----cCCCCCeEEEEEcCCC---CCEEEEEe-C-------
Q 001358          804 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILT---I----MPPSPTATSLAFNPHD---NNVIAIGM-D-------  864 (1092)
Q Consensus       804 ~v~~~~~s~dg~-~l~~~sdg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~s~~d---~~~lasg~-~-------  864 (1092)
                      ....++|.|+|+ ++++-..|.|++++.. ++....   +    .........++++| +   +..|.+.. .       
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~p-df~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAP-DFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECT-THHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECC-CCCCCCEEEEEEeCCCCCCCc
Confidence            457899999999 7766667999999854 332211   1    11234568999999 4   33444432 2       


Q ss_pred             CCeEEEEEcCCc-------eee-Eeec-----cccCCeEEEEEcCCCCEEEEEeCC-------------CcEEEEEcCCC
Q 001358          865 DSTILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGW  918 (1092)
Q Consensus       865 dg~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~spdg~~l~s~s~D-------------g~i~iwd~~~~  918 (1092)
                      ...|..|++..+       +.+ ..+.     .|.  ...|+|.|||.++++.+..             |.|.-.+.+..
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            235666666432       111 1121     132  3569999999777776542             34555555431


Q ss_pred             cee-----------eeeeeecCCCCcCCCCCceEEEEec-CCCEEEEE--eCCcEEEEEcCCceee--------------
Q 001358          919 GIQ-----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTCL--------------  970 (1092)
Q Consensus       919 ~~~-----------~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~v~lwd~~~~~~~--------------  970 (1092)
                       ..           ......  .++.    ....++|.| +|++.++-  .++.=.|.-+..+...              
T Consensus       175 -~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~  247 (353)
T 2g8s_A          175 -IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGF  247 (353)
T ss_dssp             -CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSS
T ss_pred             -CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCC
Confidence             00           000111  1111    367899999 67666662  2222222222111110              


Q ss_pred             ---------------eeeccCCCcCEEEEEEec-------CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCcc
Q 001358          971 ---------------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1028 (1092)
Q Consensus       971 ---------------~~~~~~h~~~v~~l~fs~-------dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1092)
                                     ..+.-.+...+..++|..       +|.++++.-..+.|...++..+........   +.    .
T Consensus       248 ~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~---~~----~  320 (353)
T 2g8s_A          248 KIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI---LT----D  320 (353)
T ss_dssp             CCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE---SG----G
T ss_pred             ccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEc---cc----C
Confidence                           000001234677888863       577777777778888888886654433221   11    1


Q ss_pred             CcccceEEEECCCCCCEEEEEe-CCCcEEEEec
Q 001358         1029 LHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1060 (1092)
Q Consensus      1029 ~~v~~~~~~~~p~~~~~l~~~~-~dg~v~~w~~ 1060 (1092)
                      ..-++..+++.| |+.++++.. .+|  +||.+
T Consensus       321 ~~~rp~~v~~~p-dG~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          321 RGQRIRDVRTGP-DGYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             GCCCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred             CCCceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence            112467889999 467555443 344  45555

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.26  E-value=0.16  Score=53.09  Aligned_cols=170  Identities=7%  Similarity=0.021  Sum_probs=108.6

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE---CCCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPDG  408 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~---spdg  408 (1092)
                      ...---.+++|.+....++++.-..++|..||...+..... .++  ++..         -......+..|.|   .|+|
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~g   77 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNSK   77 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSCC
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCCC
Confidence            33334568899886555677766789999999986654322 110  0000         0001124678999   6888


Q ss_pred             CEEEEEe-------------CCCEEEEEEcc---CCCCccceEEecccc-----------cceeEEEeeCCCCcEEEEEE
Q 001358          409 SLLGVAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVITC  461 (1092)
Q Consensus       409 ~~las~~-------------~d~~i~iwd~~---~~~~~~~~~~l~~h~-----------~~v~~~~~s~d~~~l~l~s~  461 (1092)
                      +++++..             .+..|..+|+.   +++.+... .+....           .....++..++|+  ..|++
T Consensus        78 rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~  154 (334)
T 2p9w_A           78 RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAF  154 (334)
T ss_dssp             EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEE
T ss_pred             cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeC
Confidence            8888644             25779999999   77655422 232221           2488999999999  78888


Q ss_pred             eCC-CcEEEEECCCCceeEEEecC------CcceEEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001358          462 GDD-KTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       462 ~~d-~~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      +.- +.|...+.+.. .+..+...      ....+.|++++  ++.+|++....|.+..+|+...
T Consensus       155 s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          155 ALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred             CCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence            887 88877775433 33332111      11255778854  6677877777999999998853

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.25  E-value=0.043  Score=58.83  Aligned_cols=208  Identities=11%  Similarity=0.048  Sum_probs=114.3

Q ss_pred             cEEEEEECCCCCEEEEEe------------CCCEEEEEEccCCCCccceEEecc-----cccceeEEEeeC--CCCcEEE
Q 001358          398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSDARQQLEIDA-----HVGNVNDLAFSA--PCKQISV  458 (1092)
Q Consensus       398 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~~~~~~~~~l~~-----h~~~v~~~~~s~--d~~~l~l  458 (1092)
                      ..-.++..|+|..+++++            .+|.|.++|..+.........+.+     .......+.+.+  ++...++
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            344566788886666652            688999999974321111112333     234566777766  4543233


Q ss_pred             EEEeC--CCcEEEEECCCCc-e---eEEEecC-CcceEEEeecccCCccEEEEEec-----------------CCeEEEE
Q 001358          459 ITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAW  514 (1092)
Q Consensus       459 ~s~~~--d~~i~vwd~~~~~-~---~~~~~~~-~~~v~~i~~~~~~~~~~l~s~~~-----------------dg~i~vw  514 (1092)
                      ++-..  +.+|.+|+++.+. .   +.++.+. -...+.+.+.  ++|.+.++...                 .|.|..+
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            43333  5678888766532 2   2334332 2345677774  45666666541                 2344444


Q ss_pred             EcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC-CeE--EEEEeeccccCCceEEEEEcC-CC
Q 001358          515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AK  590 (1092)
Q Consensus       515 d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~  590 (1092)
                      +  ..+.. .....-...+.++|+||++.|+.+..   ....|+.|++.. ++.  .+.+ ..   .+....+++.+ +|
T Consensus       209 d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~-~~---~g~PDGi~vD~e~G  278 (355)
T 3sre_A          209 S--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVL-SF---DTLVDNISVDPVTG  278 (355)
T ss_dssp             C--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEE-EC---SSEEEEEEECTTTC
T ss_pred             E--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEE-eC---CCCCceEEEeCCCC
Confidence            3  33322 22222234678999999999888754   255789998753 433  2233 11   25678889999 58


Q ss_pred             CEEEEEeCC-CeEEEEECC--CCceEEEEe
Q 001358          591 DQILAAGDD-HVIKIWDMN--KVQLLTTID  617 (1092)
Q Consensus       591 ~~l~~~s~d-g~i~iwd~~--~~~~~~~~~  617 (1092)
                      +..+++..+ +.|..|+..  .+..+..+.
T Consensus       279 ~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          279 DLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             cEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            877766533 344445544  244444444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.25  E-value=0.098  Score=56.71  Aligned_cols=107  Identities=15%  Similarity=0.168  Sum_probs=62.6

Q ss_pred             CCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---CCEE
Q 001358          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL  411 (1092)
Q Consensus       335 ~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~l  411 (1092)
                      ...+.++|.|||+ ++++- .++.|.+++  +++......++              +..........|+|+||   +.+|
T Consensus        31 ~~P~~ia~~pdG~-l~V~e-~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g~l   92 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIAE-RPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEPYV   92 (352)
T ss_dssp             SCEEEEEECTTSC-EEEEE-TTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred             CCceEEEEcCCCe-EEEEe-CCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCCEE
Confidence            3678999999998 55554 458999998  44321110000              12223457889999998   5666


Q ss_pred             EEEeC-C-----CEEEEEEccCCCCc--cceE-Eec---ccccceeEEEeeCCCCcEEEEEE
Q 001358          412 GVAYS-K-----HIVQLYAYHGGSDA--RQQL-EID---AHVGNVNDLAFSAPCKQISVITC  461 (1092)
Q Consensus       412 as~~~-d-----~~i~iwd~~~~~~~--~~~~-~l~---~h~~~v~~~~~s~d~~~l~l~s~  461 (1092)
                      .++.. .     +.|..|+...+..-  +... .+.   +.......++|.|||.  ++++.
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~  152 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT  152 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence            55533 2     56888888754211  1111 122   1112346899999996  45543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.20  E-value=0.25  Score=53.48  Aligned_cols=233  Identities=17%  Similarity=0.136  Sum_probs=118.7

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC---CCE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL  410 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~  410 (1092)
                      -...+.++|.|||+ ++++- .++.|.+++ .+|+ .....++              +..........|+|+|+   +..
T Consensus        28 l~~P~~ia~~pdG~-l~V~e-~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~   89 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTE-RPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW   89 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEE-TTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCCeEEEEcCCCe-EEEEe-CCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence            34789999999997 55554 458999887 3444 1110000              11223456889999998   555


Q ss_pred             EEEEeC----C----CEEEEEEccCCC-Ccc---ce-EEec-ccccceeEEEeeCCCCcEEEEEEeC-------------
Q 001358          411 LGVAYS----K----HIVQLYAYHGGS-DAR---QQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD-------------  463 (1092)
Q Consensus       411 las~~~----d----~~i~iwd~~~~~-~~~---~~-~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~-------------  463 (1092)
                      |.++..    +    ..|..|+...+. .+.   .+ ..+. +.......++|.|||.  ++++.+.             
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence            555433    2    567888876541 111   11 0121 1111346799999997  4555332             


Q ss_pred             CCcEEEEECCCC---------ceeEEEecCCcceEEEeecccCCccEEEEEecCC---eEEEEEcCCCC-----------
Q 001358          464 DKTIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG-----------  520 (1092)
Q Consensus       464 d~~i~vwd~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~-----------  520 (1092)
                      .+.|.-.+.+..         ..+.. .++.. ...++|.+. ++.++++-....   .|.+.  ..+.           
T Consensus       168 ~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~  242 (354)
T 3a9g_A          168 AGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKA  242 (354)
T ss_dssp             SSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCC
T ss_pred             CeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCC
Confidence            245555554321         11221 23433 345677542 344444432221   13222  1111           


Q ss_pred             -------ceEEecCCCCceEEEEEe-------cCCCEEEEEecCCCCceeEEEEeCCCC-eEE--EEEeeccccCCceEE
Q 001358          521 -------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSV  583 (1092)
Q Consensus       521 -------~~~~~~~~~~~i~~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~  583 (1092)
                             ....+.........++|.       .+|+++++...    .+.|...++... +..  ..+...  ....+..
T Consensus       243 ~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~  316 (354)
T 3a9g_A          243 GRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRD  316 (354)
T ss_dssp             CCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEE
T ss_pred             CCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeE
Confidence                   112221223356778883       56765555432    445777777643 322  122111  1256888


Q ss_pred             EEEcCCCCEEEEEe
Q 001358          584 VHFDTAKDQILAAG  597 (1092)
Q Consensus       584 ~~~~~~~~~l~~~s  597 (1092)
                      +++.|||...++..
T Consensus       317 v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          317 VVIDDDGGILISTS  330 (354)
T ss_dssp             EEECTTSCEEEEEC
T ss_pred             EEECCCCcEEEEEe
Confidence            99999986555543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.12  E-value=0.026  Score=60.70  Aligned_cols=110  Identities=13%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee----
Q 001358          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV----  878 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~----  878 (1092)
                      ......+|.-++.+.++.||.-++......+.+...    -..|..+..+| +|++||..+ +..|.|-.+..+..    
T Consensus        25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            345667889999999999999998855555555443    23688999999 899999876 55799988874321    


Q ss_pred             --------eEeecc------ccCCeEEEEEcCC---CCEEEEEeCCCcEEEEEcCCC
Q 001358          879 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       879 --------~~~l~~------h~~~V~~l~~spd---g~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                              ...+.-      ...+|..+.|+|-   +..|++-..|++|++||+...
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence                    112221      2567999999995   568999999999999999873

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.06  E-value=0.029  Score=59.52  Aligned_cols=224  Identities=13%  Similarity=0.083  Sum_probs=119.1

Q ss_pred             CeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCce-----eeEeeccccCCeE
Q 001358          823 GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE-----VISKLEGHSKRVT  890 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~-----~~~~l~~h~~~V~  890 (1092)
                      ..+.+||..+.+-..  .+.........+.  . ++.+++.|+.+     ..+.+||..+.+     .+..+......-.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG  107 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence            358899988765322  2222111222222  2 56788888765     368999988765     2222222222222


Q ss_pred             EEEEcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-eC-----CcE
Q 001358          891 GLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----THL  959 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~d-----~~v  959 (1092)
                      .+.+  ++++++.|+.++     .+.+||..+.+......+.  ...      ....+..-++++++.| .+     ..+
T Consensus       108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ--TAR------EGAGLVVASGVIYCLGGYDGLNILNSV  177 (301)
T ss_dssp             EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECS--SCC------BSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred             EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCC--CCc------ccceEEEECCEEEEECCCCCCcccceE
Confidence            2232  677888777543     5888998886644422221  111      1112223367766663 22     469


Q ss_pred             EEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       960 ~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      .+||..+.+-...-.... ......+...++++++.|+.+     ..+.+||+.+.+....-    ..+..    .....
T Consensus       178 ~~~d~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~----~~p~~----r~~~~  248 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMAT-KRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT----SMTTP----RCYVG  248 (301)
T ss_dssp             EEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC----CCSSC----CBSCE
T ss_pred             EEEeCCCCcEEeCCCCCc-ccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC----CCCCc----cccee
Confidence            999988765443211111 111112223377788888764     46899999988654221    12211    11112


Q ss_pred             EEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001358         1035 AIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
                      ++..   ++.+++.|+.++     .|.+||+.  ..+|...++.
T Consensus       249 ~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  287 (301)
T 2vpj_A          249 ATVL---RGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTSM  287 (301)
T ss_dssp             EEEE---TTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEEE
T ss_pred             EEEE---CCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCCC
Confidence            2223   357888887663     56777774  4568776543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.05  E-value=0.041  Score=58.53  Aligned_cols=233  Identities=10%  Similarity=0.010  Sum_probs=124.6

Q ss_pred             CEEEEEe---CCeEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcee--eEeec
Q 001358          815 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE  883 (1092)
Q Consensus       815 ~~l~~~s---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~--~~~l~  883 (1092)
                      .+++.|+   ...+.+||..+.+-..  .+........++.+   ++.+++.|+.+    ..+.+||..+.+-  +..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3444454   2569999998765332  22222222233333   56788888765    5789999988642  22332


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-
Q 001358          884 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-  955 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-  955 (1092)
                      .....-..+.+  ++++++.|+.+      ..+.+||..+.+......+..  ..      ....+..-++++++.+ . 
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r------~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QR------CSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CC------BSCEEEEETTEEEEECCEE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--Cc------ceeEEEEECCEEEEECCCC
Confidence            22222222232  67788888765      458899998866433211111  11      1112223366666663 2 


Q ss_pred             --------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeecccccc
Q 001358          956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1022 (1092)
Q Consensus       956 --------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~ 1022 (1092)
                              -..+.+||..+.+-...-.... ......+..-++++++.|+.+     ..+.+||+.+.+....    ...
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~  234 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPM  234 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCC
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCC
Confidence                    3458899998775433211111 111112222377778877754     3588999988754422    122


Q ss_pred             CCCCccCcccceEEEECCCCCCEEEEEeCC-----CcEEEEecCCCCCccccCCCCC
Q 001358         1023 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1023 ~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                      +..     ....+++..  ++.+++.|+.+     ..+.+||+  ...+|...++..
T Consensus       235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~  282 (306)
T 3ii7_A          235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVR  282 (306)
T ss_dssp             SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEE
T ss_pred             CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcc
Confidence            221     111222222  35788888865     45777777  445688765443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.00  E-value=0.54  Score=50.61  Aligned_cols=259  Identities=11%  Similarity=0.079  Sum_probs=149.9

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ...|.+.|+.++..+....-      ...+.-.+|..+.++.-. ..++.|||+++.+.+........   |..-.|-.+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWkWis~  116 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL  116 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEEEET
T ss_pred             CCeEEEEECCCCCcceeccc------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEEecCC
Confidence            44788899988665432221      223455888887666654 78999999999999998876643   555666544


Q ss_pred             CCEEEEEeCCCeEEEEECCCC-CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          634 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                       +.|+..+. ..|+-|++... .+...+..|..-                                              
T Consensus       117 -~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L----------------------------------------------  148 (494)
T 1bpo_A          117 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSL----------------------------------------------  148 (494)
T ss_dssp             -TEEEEECS-SEEEEEESSSSCCCEEEEECCGGG----------------------------------------------
T ss_pred             -CeEEEEcC-CeeEEecccCCCCchhheecchhc----------------------------------------------
Confidence             34555544 58999998642 122221111100                                              


Q ss_pred             eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec-------CCeeEEeeecCCccccCcccccccCCccccC
Q 001358          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1092)
                                          ....|-....+++.++++..+-       .|.+.+|..+....                 
T Consensus       149 --------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-----------------  191 (494)
T 1bpo_A          149 --------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----------------  191 (494)
T ss_dssp             --------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-----------------
T ss_pred             --------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-----------------
Confidence                                1223444555566665554332       25566665543211                 


Q ss_pred             CCCCceeeecCCCCCCCCCeeEEEEecC---CCEEEEEe----CCeEEEEEcCCc---------eeeEEecC---CCCCe
Q 001358          786 RHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS----GGVISLYIVMTF---------KTILTIMP---PSPTA  846 (1092)
Q Consensus       786 ~~~~~~~~~~l~~~~~~~~v~~~~~s~d---g~~l~~~s----dg~i~iwd~~~~---------~~~~~~~~---~~~~i  846 (1092)
                           ..   +.  +|......+.+..+   ..+++.+.    .++++|.++...         +.+..+-.   ..+--
T Consensus       192 -----Q~---ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP  261 (494)
T 1bpo_A          192 -----QP---IE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (494)
T ss_dssp             -----EE---EC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred             -----ch---he--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence                 00   00  12222211111111   12333332    378999988532         11111111   23455


Q ss_pred             EEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCC
Q 001358          847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1092)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~  918 (1092)
                      .++.+|+ .-.++..-+.-|.+++||+.++.++..-+-....|-..+-..+..=++.....|.|.--.++..
T Consensus       262 vamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          262 VAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             eEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            7888998 6678889999999999999999998777666666766666555555555667777766666553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.97  E-value=0.041  Score=58.35  Aligned_cols=236  Identities=11%  Similarity=-0.006  Sum_probs=119.3

Q ss_pred             CCCEEEEEe-CC-----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001358          407 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG  475 (1092)
Q Consensus       407 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~  475 (1092)
                      ++..++.|+ .+     ..+.+||..+++-.. ...+....  ....+...+++  +++.|+.+     ..+.+||+.++
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r--~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKR--RYVASVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCC--BSCEEEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhh--ccccEEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence            455666665 32     358889988754211 11111111  11112223555  66667654     46899998887


Q ss_pred             c---eeEE--EecCCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEE
Q 001358          476 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1092)
Q Consensus       476 ~---~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1092)
                      +   -...  +.........+.+    ++.+++.|+.++     .+.+||..+.+-...-..+.......+...+++.++
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  164 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC  164 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred             CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence            6   3222  1111111111212    456777776543     577888766543222111111111122223677777


Q ss_pred             EEecCCC-CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCC
Q 001358          546 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG  619 (1092)
Q Consensus       546 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~  619 (1092)
                      .++.++. ....+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||+.+.+....-...
T Consensus       165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            7665332 13458999998876544321111 1112222222  45566666653     46899999887765443322


Q ss_pred             CCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCCe
Q 001358          620 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS  656 (1092)
Q Consensus       620 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~  656 (1092)
                      ..  .....+..-++++++.|+.+     ..+.+||..+.+.
T Consensus       242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence            21  12222233367777777765     4577888876643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.93  E-value=0.083  Score=55.93  Aligned_cols=222  Identities=10%  Similarity=0.039  Sum_probs=117.2

Q ss_pred             CeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcee--eEeeccccCCeEEEE
Q 001358          823 GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV--ISKLEGHSKRVTGLV  893 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~--~~~l~~h~~~V~~l~  893 (1092)
                      ..+..||..+.+-...  +......-..+.+   ++.+++.|+.++     .+.+||..+.+-  +..+......-..+.
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence            4588899887653222  2211112222222   567777777553     688999887642  222222122222222


Q ss_pred             EcCCCCEEEEEeCCC-----cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-------CCcEE
Q 001358          894 FSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLA  960 (1092)
Q Consensus       894 ~spdg~~l~s~s~Dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-------d~~v~  960 (1092)
                      +  ++++++.|+.++     .+.+||+.+.+.....   ......    .-.++ ..-++++++.| .       -..+.
T Consensus       107 ~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r----~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          107 L--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA---PMNTRR----SSVGV-GVVGGLLYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             E--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC---CCSSCC----BSCEE-EEETTEEEEECCEETTTTEECCCEE
T ss_pred             E--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecC---CCCCcc----cCceE-EEECCEEEEEeCCCCCCCccccEEE
Confidence            2  677888887654     4778888876543322   111111    11122 22366666663 2       23588


Q ss_pred             EEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeeccccccCCCCccCcccceE
Q 001358          961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1035 (1092)
Q Consensus       961 lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1035 (1092)
                      +||..+.+-...-.......-.+ +..-++++++.|+.+     ..+.+||+.+.+....-    ..+..     .....
T Consensus       177 ~yd~~~~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~~~~-----r~~~~  246 (302)
T 2xn4_A          177 CYNATTNEWTYIAEMSTRRSGAG-VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA----DMNMC-----RRNAG  246 (302)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCE-EEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC----CCSSC-----CBSCE
T ss_pred             EEeCCCCcEEECCCCcccccccc-EEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC----CCCCc-----cccCe
Confidence            99998765433211111111112 223377888888765     36889999887554221    12211     11112


Q ss_pred             EEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCC
Q 001358         1036 IAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus      1036 ~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~ 1071 (1092)
                      ++..  ++.+++.|+.++     .+.+||+.  ..+|...+
T Consensus       247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~  283 (302)
T 2xn4_A          247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPT--TDKWTVVS  283 (302)
T ss_dssp             EEEE--TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECS
T ss_pred             EEEE--CCEEEEECCcCCCcccccEEEEcCC--CCeEEECC
Confidence            2222  357888888664     47888884  45698776

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.89  E-value=0.23  Score=53.67  Aligned_cols=237  Identities=8%  Similarity=-0.011  Sum_probs=118.1

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEEccCCC--CccceE-EecccccceeEEEeeCC---CCcEEEEEEeC-------
Q 001358          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQL-EIDAHVGNVNDLAFSAP---CKQISVITCGD-------  463 (1092)
Q Consensus       397 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~-~l~~h~~~v~~~~~s~d---~~~l~l~s~~~-------  463 (1092)
                      .....|+|.|||+.|.++...|.|++++.....  .+.... ...........++|+|+   +.. +.++-..       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCCc
Confidence            457889999999944455577899999854321  111000 01112345689999996   554 3333222       


Q ss_pred             CCcEEEEECCCC--c--eeEE-EecC------CcceEEEeecccCCccEEEEEec-------------CCeEEEEEcCCC
Q 001358          464 DKTIKVWDAVTG--S--RTYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL  519 (1092)
Q Consensus       464 d~~i~vwd~~~~--~--~~~~-~~~~------~~~v~~i~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~  519 (1092)
                      ...|..|+...+  .  .... +...      ...-..++|.  +||.+.++.+.             .|.|.-++.+..
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            235666666533  1  1111 1111      1113457774  46666555433             245666665532


Q ss_pred             C------------ceEEecCCCCceEEEEEec-CCCEEEEEecCCCCceeEEEEe--------CCCC-------------
Q 001358          520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWN--------ESEG-------------  565 (1092)
Q Consensus       520 ~------------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd--------~~~~-------------  565 (1092)
                      -            ....+...-.....++|.| +|+..++ -...++...|.+..        ...+             
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            0            1111111223467899999 5554443 32211111222211        1000             


Q ss_pred             --------eEEEEEeeccccCCceEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCceEEEEeC-CCCCCCCceEE
Q 001358          566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRIC  629 (1092)
Q Consensus       566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~  629 (1092)
                              ..+..+..    ......+.|..       ++.++++.-..+.|...++..++....... ......+..++
T Consensus       254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence                    00001111    12456677753       456666666777888888776554433221 11123578899


Q ss_pred             EccCCCEEEEEe
Q 001358          630 FNKNGTLLAVIA  641 (1092)
Q Consensus       630 ~s~~~~~l~~~~  641 (1092)
                      +.|||.++++..
T Consensus       330 ~~pdG~lyv~td  341 (353)
T 2g8s_A          330 TGPDGYLYVLTD  341 (353)
T ss_dssp             ECTTSCEEEEEC
T ss_pred             ECCCCcEEEEEe
Confidence            999998666543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.82  E-value=0.075  Score=56.41  Aligned_cols=235  Identities=8%  Similarity=-0.027  Sum_probs=118.6

Q ss_pred             CEEEEEeC--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC----CcEEEEECCCCceeEEEe
Q 001358          409 SLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       409 ~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~  482 (1092)
                      .+++.|+.  ...+.+||..+++-.. ...+......-..+  .-+++  +++.|+.+    ..+.+||+.+++-...-.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~--~~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACV--FWDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEE--EETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEE--EECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            34555553  3468899988754211 11111111111122  23555  66677654    578899988876433221


Q ss_pred             cCC--cceEEEeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCC-
Q 001358          483 GHG--APVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-  553 (1092)
Q Consensus       483 ~~~--~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~-  553 (1092)
                      ...  .....+.+    ++.+++.|+.+      ..+.+||..+..-...-..+.......+..-+++.++.++..... 
T Consensus        88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV  163 (306)
T ss_dssp             CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTT
T ss_pred             CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCC
Confidence            111  11111222    45677777765      357888877654322211111111111223466766766653332 


Q ss_pred             ----ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCC
Q 001358          554 ----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPE  624 (1092)
Q Consensus       554 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~  624 (1092)
                          ...+.+||+.+.+-...-.... ....-..+.+  ++..++.|+.+     ..+.+||..+.+....-........
T Consensus       164 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  240 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT  240 (306)
T ss_dssp             TCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred             cccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence                3558999998876543322111 1112222222  45556666543     4688999988765443222221111


Q ss_pred             CceEEEccCCCEEEEEeCC-----CeEEEEECCCCCee
Q 001358          625 NPRICFNKNGTLLAVIANE-----NRIKILETPESNSV  657 (1092)
Q Consensus       625 v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~  657 (1092)
                      ...+.  -++++++.|+.+     ..+.+||..+.+..
T Consensus       241 ~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          241 VKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             CEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             eeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            22222  267788888753     56888888876433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.80  E-value=0.13  Score=54.94  Aligned_cols=229  Identities=10%  Similarity=0.072  Sum_probs=120.7

Q ss_pred             eCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC-----C------CeEEEEEcCCcee--eEeecccc
Q 001358          821 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHS  886 (1092)
Q Consensus       821 sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~v~iwd~~~~~~--~~~l~~h~  886 (1092)
                      ++..+.+||..+.+-.. .+..+.......+... ++.+++.|+.     .      ..+.+||..+.+-  +..+....
T Consensus        11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r   89 (315)
T 4asc_A           11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR   89 (315)
T ss_dssp             ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred             cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence            34678999998876432 2222223333334444 6778888874     1      1378899887642  22222111


Q ss_pred             CCeEEEEEcCCCCEEEEEeCC--------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-C
Q 001358          887 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E  956 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~D--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d  956 (1092)
                      ..-..+.+  ++++++.|+.+        ..+.+||..+.+......+..  .      .....+..-++++++.| . +
T Consensus        90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~------r~~~~~~~~~~~iyv~GG~~~  159 (315)
T 4asc_A           90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--V------VYGHTVLSHMDLVYVIGGKGS  159 (315)
T ss_dssp             ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--C------CBSCEEEEETTEEEEECCBCT
T ss_pred             hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--c------ccceeEEEECCEEEEEeCCCC
Confidence            11122222  66777777743        358899998865333221111  1      11222333566666664 3 2


Q ss_pred             -----CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceEEeeccccccCCCC
Q 001358          957 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1026 (1092)
Q Consensus       957 -----~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1026 (1092)
                           +.+.+||..+.+-....... .......+..-++++++.|+.++     .+.+||+.+.+....-    ..+.. 
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~-  233 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE----AFPQE-  233 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC----CCSSC-
T ss_pred             CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC----CCCCc-
Confidence                 46999999876543321111 11111122233778888888764     4888999887554221    12211 


Q ss_pred             ccCcccceEEEECCCCCCEEEEEeCCC--------------cEEEEecCCCCCccccCCCCC
Q 001358         1027 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1027 ~~~~v~~~~~~~~p~~~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                          ....+++..  ++.+++.|+.++              .+.+||+  ...+|...+|..
T Consensus       234 ----r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~  287 (315)
T 4asc_A          234 ----RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREI  287 (315)
T ss_dssp             ----CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCS
T ss_pred             ----ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCC
Confidence                111122222  357888888643              3556666  455798875544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.76  E-value=0.77  Score=48.86  Aligned_cols=99  Identities=11%  Similarity=0.125  Sum_probs=58.4

Q ss_pred             eeEEEEecCCCEEEEEe--CCeEEEEEcCCcee------------------eEEecCCCCCeEEEEEcCCCCCEEEEEeC
Q 001358          805 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGMD  864 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~  864 (1092)
                      ...++|.|+|.+.++-.  ++.-.|--+..+..                  +..+..+......++|..  +.++.....
T Consensus       204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~  281 (347)
T 3das_A          204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLR  281 (347)
T ss_dssp             CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEEST
T ss_pred             cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeecccc
Confidence            45789999887766553  22223333332221                  122222223556788874  556666666


Q ss_pred             CCeEEEEEcCCcee----eEeeccccCCeEEEEEcCCCCEEEEEe
Q 001358          865 DSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       865 dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s~s  905 (1092)
                      .+.|....+.....    ...+.+..+.+..|+..|||.++++.+
T Consensus       282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            66777777765432    233445557899999999998877654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.76  E-value=0.089  Score=55.69  Aligned_cols=235  Identities=12%  Similarity=0.036  Sum_probs=116.6

Q ss_pred             CCEEEEEeCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC-----CcEEEEECCCCcee
Q 001358          408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT  478 (1092)
Q Consensus       408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~~~  478 (1092)
                      +..++.|+.+    ..+..||+.+++- .....+...... .+++ .-+++  +++.|+.+     ..+.+||..+.+-.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~-~~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCR-AGMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBS-CEEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCccccc-ceEE-EECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence            4455555532    3478888887532 111111111111 1222 22555  66666644     35889998877543


Q ss_pred             EEE--ecCCcceEEEeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          479 YSF--EGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       479 ~~~--~~~~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      ..-  .........+.+    ++.+++.|+.++     .+.+||+.+.+-...-..........+..-+++.++.++.+.
T Consensus        91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence            221  111111112222    456777777654     466777765443222111111111112223667677766543


Q ss_pred             CC---ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCC
Q 001358          552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP  623 (1092)
Q Consensus       552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~  623 (1092)
                      ..   ...+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||..+.+....-.....  
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--  241 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--  241 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred             CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence            32   3458899998876544321111 1122222222  45666666654     4689999988766544322211  


Q ss_pred             CCceEEEccCCCEEEEEeCCC-----eEEEEECCCCCe
Q 001358          624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS  656 (1092)
Q Consensus       624 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~  656 (1092)
                      .....+..-++++++.|+.++     .+.+||..+.+.
T Consensus       242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            112222333677778877653     478888887643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.67  E-value=0.085  Score=56.08  Aligned_cols=236  Identities=10%  Similarity=0.051  Sum_probs=122.9

Q ss_pred             ecCCCEEEEEe-----CCeEEEEEcCCceeeEE--ecCCCCCeEEEEEcCCCCCEEEEEeC----C-----CeEEEEEcC
Q 001358          811 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR  874 (1092)
Q Consensus       811 s~dg~~l~~~s-----dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~  874 (1092)
                      .-++.+++.|+     -..+.+||..+.+-...  +....... +++..  ++.+++.|+.    +     ..+.+||..
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            34566666665     14689999887653322  22111122 22222  5667777775    2     368899988


Q ss_pred             Ccee--eEeeccccCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC
Q 001358          875 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       875 ~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      +.+-  +..+......-..+.+  ++++++.|+.+     ..+.+||..+.+......+  +....     -.+++ .-+
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~-----~~~~~-~~~  168 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM--LTRRI-----GVGVA-VLN  168 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCC--SSCCB-----SCEEE-EET
T ss_pred             CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCC--Ccccc-----ceEEE-EEC
Confidence            7642  2222221122222333  67777777654     3588899988654332211  11111     11222 226


Q ss_pred             CCEEEEE-eC-----CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEee
Q 001358          948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       948 g~~la~~-~d-----~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~ 1016 (1092)
                      +++++.| .+     +.+.+||..+.+-...-.......-.+++ .-++++++.|+.+     ..+.+||+.+.+....-
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            6666663 22     45899998876543221111111111122 2377788888765     46899999887554211


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCC-----cEEEEecCCCCCccccCCCC
Q 001358         1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1073 (1092)
Q Consensus      1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1073 (1092)
                          ..+..     ....+++..  ++.+++.|+.++     .+.+||+.  ..+|...++.
T Consensus       248 ----~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~  296 (308)
T 1zgk_A          248 ----PMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM  296 (308)
T ss_dssp             ----CCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred             ----CCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence                12211     111222222  357888887653     56777774  4568876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.65  E-value=1.2  Score=49.62  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=77.4

Q ss_pred             CeeEEEEecCCCEEEEEe--CCeEEEEEcCCcee-------------eEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001358          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI  868 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  868 (1092)
                      ..-.+.++|||+++++++  +.++.++|+.....             ..... -.-.....+|.+ +|....+..-|..|
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv  401 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV  401 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence            345688999999999997  68899999874211             11121 234567899999 78666667789999


Q ss_pred             EEEEcCCc----------eeeEeeccccCCeEEEEE------cCCCCEEEEEe---CCCc----------EEEEEcCCCc
Q 001358          869 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGWG  919 (1092)
Q Consensus       869 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spdg~~l~s~s---~Dg~----------i~iwd~~~~~  919 (1092)
                      .-|++...          ..+.++.-|-.+- .+.-      .|||++|++..   .|+-          -.+.|+...+
T Consensus       402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk  480 (638)
T 3sbq_A          402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE  480 (638)
T ss_dssp             EEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred             EEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence            99999764          3556666554422 2322      57999999874   4553          3677776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.62  E-value=0.18  Score=53.78  Aligned_cols=232  Identities=9%  Similarity=-0.029  Sum_probs=115.4

Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC-----C------CcEEEEECCCCceeE
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY  479 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~~~~~~  479 (1092)
                      ++.|+  ..+.+||..+++-..  ..+..........+...+++  +++.|+.     .      ..+.+||..+++-..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            34444  468999998865221  22222222333333445666  5666663     1      127788988776432


Q ss_pred             EEecCCcceE--EEeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358          480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       480 ~~~~~~~~v~--~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                       +.....+-.  +++.  . ++.+++.|+.+        ..+.+||..+.+=...-..+.......+...+++.++.++.
T Consensus        82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  157 (315)
T 4asc_A           82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK  157 (315)
T ss_dssp             -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence             111111111  1111  1 44666766632        34788887765322211111111112223356666667664


Q ss_pred             CC--CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCceEEEEeCCCCC
Q 001358          550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL  622 (1092)
Q Consensus       550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg-----~i~iwd~~~~~~~~~~~~~~~~  622 (1092)
                      ..  .....+.+||+.+.+-...-.... ......++.+  ++..++.|+.++     .+.+||+.+.+....-..... 
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-  233 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-  233 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred             CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence            21  123468999998876543221111 1112222222  556666776544     588899988766554332222 


Q ss_pred             CCCceEEEccCCCEEEEEeCC--------------CeEEEEECCCCCee
Q 001358          623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV  657 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~  657 (1092)
                       .....+..-++++++.|+.+              ..+.+||..+.+..
T Consensus       234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence             12222223367777777753              24677888776443

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=96.48  E-value=0.0021  Score=51.36  Aligned_cols=35  Identities=34%  Similarity=0.569  Sum_probs=32.5

Q ss_pred             CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001358            1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1092)
Q Consensus         1 ~~~~~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~   35 (1092)
                      |+....||-.||..||+|.||..||-+|++||+|.
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            78899999999999999999999999999999974

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.47  E-value=0.67  Score=49.53  Aligned_cols=189  Identities=9%  Similarity=0.095  Sum_probs=110.9

Q ss_pred             ceeEEEeeCCCCcEEEEEEe------------CCCcEEEEECCC--Ccee-EEEec-----CCcceEEEeecccCCc--c
Q 001358          443 NVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVT--GSRT-YSFEG-----HGAPVYSLCPHAKENI--H  500 (1092)
Q Consensus       443 ~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~--~~~~-~~~~~-----~~~~v~~i~~~~~~~~--~  500 (1092)
                      ..-.++..|+|.  .+++++            .+|.|.++|.++  ++.. ..+.+     .......+.+..+.++  .
T Consensus        51 G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            344666778765  444442            689999999874  2321 12332     1234556666554344  3


Q ss_pred             EEEEEec--CCeEEEEEcCCCCceE----EecC-CCCceEEEEEecCCCEEEEEecC-------------CCCceeEEEE
Q 001358          501 FIFSISV--DGKIKAWLYDSLGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEW  560 (1092)
Q Consensus       501 ~l~s~~~--dg~i~vwd~~~~~~~~----~~~~-~~~~i~~~~~s~dg~~l~~~~~~-------------~~~~~~i~iw  560 (1092)
                      ++++-..  +.+|.+|+++......    .+.. .-.....+.+.++|++.++....             +...+.|+.+
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~  208 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  208 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence            4444333  5678888877654332    2222 22357899999999977765310             1234678888


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC-CceE--EEEeCCCCCCCCceEEEcc-CCC
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK-VQLL--TTIDAGGGLPENPRICFNK-NGT  635 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~v~~s~-~~~  635 (1092)
                      |..  +......+.    ...+.++|+||++.++.+. ..+.|+.|++.. +...  ..+...   ...-.+++.+ +|+
T Consensus       209 d~~--~~~~~~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~  279 (355)
T 3sre_A          209 SPN--DVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGD  279 (355)
T ss_dssp             CTT--CCEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCC
T ss_pred             ECC--eEEEeecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCc
Confidence            763  332223332    4678999999998887765 678899999863 4332  233221   2245678888 487


Q ss_pred             EEEEEeC
Q 001358          636 LLAVIAN  642 (1092)
Q Consensus       636 ~l~~~~~  642 (1092)
                      +.+++..
T Consensus       280 lwva~~~  286 (355)
T 3sre_A          280 LWVGCHP  286 (355)
T ss_dssp             EEEEEES
T ss_pred             EEEEecC
Confidence            7665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.25  E-value=0.038  Score=53.48  Aligned_cols=142  Identities=8%  Similarity=-0.005  Sum_probs=80.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCcee-----eEeeccc--cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee----e
Q 001358          855 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT----C  923 (1092)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~----~  923 (1092)
                      ...+|++...| +|+.=...++..     ..+-.++  =..++.++|+|+|.+.+.  .+|.+.-.+..+.....    .
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34567777777 666554444431     1111122  236779999999997777  66654444433211110    0


Q ss_pred             eeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeec-c------CCCcCEEEEEEecCCCEEEEE
Q 001358          924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF-P------ISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       924 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~-~------~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      ..+-.. +-.    ...++.|.|+|.+.++ .|+.|+-++-.+.... .|+ .      .--..+..|.|.|+|.+.+..
T Consensus        80 t~IG~~-Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A           80 KKIGNG-GWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             EEEECS-CGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             cEeccc-ccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            111000 100    1368999999999988 7798887775432111 111 0      112567999999999877765


Q ss_pred             eCCCcEEEEECC
Q 001358          997 FVDGTLSIHEAS 1008 (1092)
Q Consensus       997 s~Dg~i~vwd~~ 1008 (1092)
                        |+.++-+...
T Consensus       153 --dg~lyr~~~P  162 (236)
T 1tl2_A          153 --GQQFYKALPP  162 (236)
T ss_dssp             --TTEEEEECCC
T ss_pred             --CCcEEecCCC
Confidence              7775544444

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.18  E-value=0.1  Score=56.18  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=79.3

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceee-------eeeeeeecccccceeEEeeecCCCCcEEEEEECCC-
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-------RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-  407 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd-  407 (1092)
                      +|..+..||+|+ +||..+. .+|.|-.+..+.....       ...+-|.+...        ......+|..+.|+|- 
T Consensus        67 ~i~qlvlSpsG~-lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~--------~~~~~s~I~qVlWHPl~  136 (452)
T 3pbp_A           67 DTFHVISSTSGD-LLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE--------EVGPKSSIKKVLFHPKS  136 (452)
T ss_dssp             TTCEEEECTTSS-EEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC--------C--CCCCEEEEEECTTB
T ss_pred             ceeEEEECCCCC-EEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc--------ccCCCCceeEEEecccc
Confidence            788999999999 5555433 6899988874432221       11112222110        0114678999999994 


Q ss_pred             --CCEEEEEeCCCEEEEEEccCCCCccceEEec---------ccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          408 --GSLLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       408 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                        |..|++-..|++|++||+....... . .+.         .....|.+++|.+++-++++++....|.|+-.
T Consensus       137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P-~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          137 YRDSCIVVLKEDDTITMFDILNSQEKP-I-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             GGGCEEEEEETTSCEEEEETTCTTSCC-E-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CCCCeEEEEecCCEEEEEEcccCCCCC-c-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence              5689999999999999998633211 1 222         22356888899888776666666666766554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.08  E-value=0.31  Score=60.66  Aligned_cols=233  Identities=13%  Similarity=0.119  Sum_probs=140.0

Q ss_pred             EEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeeEeeccc
Q 001358          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH  885 (1092)
Q Consensus       807 ~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h  885 (1092)
                      +.-.+|..+.+|.-.+.++.|+|+++...+..+.- ...|.-=.|-.  .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            45578888888888888999999998877766553 33565556654  34555444 56799999974 3455555545


Q ss_pred             ----cCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEE--ec-CCCEE
Q 001358          886 ----SKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF--HK-DQTRF  951 (1092)
Q Consensus       886 ----~~~V~~l~~spdg~~l~s~s~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--s~-dg~~l  951 (1092)
                          ...|..-.-+++.++++..|-       .|.+.+|+++.+.      -+..+||..   ....+.+  ++ ....+
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence                456777888899999886543       4788999988743      344455543   1111111  11 12222


Q ss_pred             EEEe----CCcEEEEEcCCc---ee------eeeeccC--CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEee
Q 001358          952 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1092)
Q Consensus       952 a~~~----d~~v~lwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~ 1016 (1092)
                      +.+.    .++++|.++...   ..      +..+++.  -..-..++..|+.-..+...+.-|.|.++|+.+|..+.+-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            2232    267888887542   11      1111111  1444556677776677888888999999999999887544


Q ss_pred             ccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCC
Q 001358         1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1063 (1092)
Q Consensus      1017 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~ 1063 (1092)
                      +.        ++..|...  +.+.. ..-++.....|.|.--.+.+.
T Consensus       297 ri--------s~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~~  332 (1630)
T 1xi4_A          297 RI--------SGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEE  332 (1630)
T ss_pred             cc--------cCCceEEe--ccCCC-CCceEEEcCCceEEEEEEccc
Confidence            41        12233322  22322 233555557777766665443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.01  E-value=0.43  Score=51.73  Aligned_cols=239  Identities=12%  Similarity=0.069  Sum_probs=117.3

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCC----ceeeEEec-CCCCCeEEEEEcCCCCCEEEEEeC-C---------CeEEEEEcC
Q 001358          812 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR  874 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~  874 (1092)
                      -++++++.|+  ...+.+||..+    ++.+..+. .......++.+   ++++++.|+. +         ..+.+||..
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            3677777775  36799999863    33333332 11222223333   5677777776 2         468999998


Q ss_pred             Ccee--eEeec-cccCCeEEEEEcCCCCEEEEEeCC---------------------------------------CcEEE
Q 001358          875 SSEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV  912 (1092)
Q Consensus       875 ~~~~--~~~l~-~h~~~V~~l~~spdg~~l~s~s~D---------------------------------------g~i~i  912 (1092)
                      +.+-  +..+. .....-.++.  .++++++.|+.+                                       ..+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  172 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS  172 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred             CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence            7642  22222 1111122222  577888888865                                       46889


Q ss_pred             EEcCCCceeeeeeeecCCCCcCCCCCc-eEEEEecCCCEEEEE-e------CCcEEEEEc--CCceeeeee-ccCCCcCE
Q 001358          913 WDVDGWGIQTCRSLQTPDGVMTLAPSE-THIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPI  981 (1092)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~s~dg~~la~~-~------d~~v~lwd~--~~~~~~~~~-~~~h~~~v  981 (1092)
                      ||..+.+......+....       .- .+++. -++++++.+ .      ...+..||+  .+.+-.... ........
T Consensus       173 yd~~~~~W~~~~~~p~~~-------~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          173 FDPSTQQWSYAGESPWYG-------TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA  244 (357)
T ss_dssp             EETTTTEEEEEEECSSCC-------CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred             EeCCCCcEEECCCCCCCC-------cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence            999886644422211111       11 22222 356666653 2      235777876  443322211 11111111


Q ss_pred             EEEEEecCCCEEEEEeCC----------------------CcEEEEECCCCceEEeeccccccCCCCccCcccceEEEEC
Q 001358          982 SQATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1039 (1092)
Q Consensus       982 ~~l~fs~dg~~l~t~s~D----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1039 (1092)
                      ...+...++++++.|+.+                      ..+.+||+.+.+....    ...+..    .....++.. 
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----r~~~~~~~~-  315 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG----RAYGVSLPW-  315 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC----CBSSEEEEE-
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC----cccceeEEe-
Confidence            222334577788877742                      2578899987755432    122222    111122333 


Q ss_pred             CCCCCEEEEEeCCC------cEEEEecCCCCCccccCCCCCcc
Q 001358         1040 PLKPTQFAVGLTNG------EVYVIEPNEPGDTWAVLPPDEIV 1076 (1092)
Q Consensus      1040 p~~~~~l~~~~~dg------~v~~w~~~~~~~~~~~~~~~~~~ 1076 (1092)
                        ++.+++.|+.++      .|.++++  ...+|....|...+
T Consensus       316 --~~~i~v~GG~~~~~~~~~~v~~l~~--~~~~~~~~~~~~~~  354 (357)
T 2uvk_A          316 --NNSLLIIGGETAGGKAVTDSVLITV--KDNKVTVQNLEHHH  354 (357)
T ss_dssp             --TTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC-----
T ss_pred             --CCEEEEEeeeCCCCCEeeeEEEEEE--cCcEeEeeeccccc
Confidence              368889999764      2334455  55668877776643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.05  Score=57.72  Aligned_cols=198  Identities=9%  Similarity=0.040  Sum_probs=110.0

Q ss_pred             CEEEEEeCCCeEEEEEcCCceeeEeeccc-cCCeEEEEE--cC-CCCEEEEE-eCCCcEEEEEcCCCceeeeeeeecCCC
Q 001358          857 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG  931 (1092)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-dg~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~~~~~~  931 (1092)
                      .++++++.||.|+-.|..+|+.+.+++.. ..++....-  .+ ++..++.. +.||.|..++..+|.......+.....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999999888754 123322110  01 23334333 589999999988874332111111111


Q ss_pred             CcCCCCCceEEEE------------ecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcC------EEEEEEe-----c
Q 001358          932 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C  988 (1092)
Q Consensus       932 ~~~~~~~v~~l~~------------s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~  988 (1092)
                      .       .-+..            +.+|..++.+.++++.-.|+.+|+.+..+..+....      ..|....     .
T Consensus        91 ~-------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           91 T-------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             T-------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             c-------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence            0       00121            244544444789999999999999998765442111      1111111     1


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcEEEEecCCCCCcc
Q 001358          989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1067 (1092)
Q Consensus       989 dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~~~~ 1067 (1092)
                      .+..|+.+..+..+.+.+ .+|+ ...+....+.+.... ..+.. ....+. |+.. ++++.||.|..+|.......|
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            245777788888888777 5564 433333333332200 00000 000011 3344 557888999888888777778

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.95  E-value=0.24  Score=52.48  Aligned_cols=238  Identities=6%  Similarity=-0.053  Sum_probs=117.5

Q ss_pred             CCCCCEEEEEeCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC----C-----CcEEEEE
Q 001358          405 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD  471 (1092)
Q Consensus       405 spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~----d-----~~i~vwd  471 (1092)
                      .-++..++.|+.+    ..+.+||..+++-... ..+......- +++ .-+++  +++.|+.    +     ..+.+||
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence            3466777777632    3588999887542211 0111111111 222 22555  5666664    2     4688999


Q ss_pred             CCCCceeEE--EecCCcceEEEeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358          472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       472 ~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1092)
                      +.+.+-...  +.........+.+    ++.+++.|+.+     ..+.+||..+.+-...-..+.......+..-+++.+
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  172 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY  172 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence            887754321  1111111112222    45667776644     357778876644222111111111111122266667


Q ss_pred             EEEecCCCC-ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeC
Q 001358          545 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       545 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.++.++.. ...+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||+.+.+....-..
T Consensus       173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  249 (308)
T 1zgk_A          173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM  249 (308)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred             EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence            776654322 3558999998876543221111 1122222333  55566666654     5689999988765543222


Q ss_pred             CCCCCCCceEEEccCCCEEEEEeCC-----CeEEEEECCCCCe
Q 001358          619 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS  656 (1092)
Q Consensus       619 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~  656 (1092)
                      ...  .....+..-++++++.|+.+     ..+.+||..+.+.
T Consensus       250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence            211  11122222367777777643     4577888876643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.87  E-value=0.71  Score=49.03  Aligned_cols=227  Identities=10%  Similarity=0.001  Sum_probs=110.7

Q ss_pred             EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC----CC-------cEEEEECCCCceeEE--EecCC
Q 001358          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG  485 (1092)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~~~~~~~--~~~~~  485 (1092)
                      .+..||..+++-..  ..+..........+...++.  +++.|+.    ++       .+.++|..+++-...  +....
T Consensus        25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r  100 (318)
T 2woz_A           25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR  100 (318)
T ss_dssp             EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred             ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence            37889988765322  12221112222333345666  6677773    11       177888877754321  11111


Q ss_pred             cceEEEeecccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC--Ccee
Q 001358          486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF  556 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~  556 (1092)
                      .....+.+    ++.+++.|+.+       ..+.+||..+.+-...-..+.......+...+++.++.++....  ....
T Consensus       101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  176 (318)
T 2woz_A          101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR  176 (318)
T ss_dssp             CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred             cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence            11111112    45677777754       24677777654322221112111111222356777676664221  1345


Q ss_pred             EEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEeCCCCCCCCceEEEc
Q 001358          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1092)
                      +.+||+.+.+-...-.... ......++.+  ++..++.|+.+     ..+.+||+.+.+....-..+..  .....+..
T Consensus       177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~  251 (318)
T 2woz_A          177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS  251 (318)
T ss_dssp             EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred             EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence            8999998876543321111 1112222222  45666666533     3577899988765543222211  11222233


Q ss_pred             cCCCEEEEEeCC--------------CeEEEEECCCCCeee
Q 001358          632 KNGTLLAVIANE--------------NRIKILETPESNSVD  658 (1092)
Q Consensus       632 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~  658 (1092)
                      -++++++.|+.+              ..+.+||..+.+...
T Consensus       252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            457777777653              357788887765443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.85  E-value=0.089  Score=50.98  Aligned_cols=149  Identities=9%  Similarity=0.027  Sum_probs=85.6

Q ss_pred             CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------eEeec--cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcC
Q 001358          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1092)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~  916 (1092)
                      .++.++|+| ++.+.++  .+|.++-.+..++..      -..+-  +-.. -.++.|.|+|.+.++  .||.|.-++-.
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            667999999 8887776  678777766654221      11110  1112 478999999999888  56888777653


Q ss_pred             CCceeeee--eeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee-----eeecc-CCCcCEEEEEEec
Q 001358          917 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC  988 (1092)
Q Consensus       917 ~~~~~~~~--~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~-----~~~~~-~h~~~v~~l~fs~  988 (1092)
                      +.......  ......+...   .+..|.|.|+|.+-++. |+.++-....++...     ...+. .....-..+.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            32211100  0001111111   47899999999999998 888654333322100     01111 2233444577899


Q ss_pred             CCCEEEEEeCCCcEEEEEC
Q 001358          989 DCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       989 dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                      +|...++.  +|  ++|..
T Consensus       192 ~G~l~~v~--~g--~~Y~~  206 (236)
T 1tl2_A          192 VGTLFGVQ--GG--KFYED  206 (236)
T ss_dssp             TSCEEEEE--TT--EEEEE
T ss_pred             CCcEEEEe--CC--eEEec
Confidence            98777655  66  44443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.53  E-value=0.92  Score=48.13  Aligned_cols=224  Identities=14%  Similarity=0.119  Sum_probs=115.6

Q ss_pred             CeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeC----CC-------eEEEEEcCCceee--EeeccccCC
Q 001358          823 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSKR  888 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~----dg-------~v~iwd~~~~~~~--~~l~~h~~~  888 (1092)
                      ..+..||..+.+-.. .+..........+... ++.+++.|+.    ++       .+.+||..+.+-.  ..+......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            458899988776433 2222222233333444 6778888883    12       2778888776432  222221111


Q ss_pred             eEEEEEcCCCCEEEEEeCC-------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-C---
Q 001358          889 VTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E---  956 (1092)
Q Consensus       889 V~~l~~spdg~~l~s~s~D-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-d---  956 (1092)
                      -..+.+  ++++++.|+.+       ..+.+||..+.+......+  +...      ....+...++++++.| . +   
T Consensus       103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r------~~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL--PIKV------YGHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC--SSCE------ESCEEEEETTEEEEECCEESSSC
T ss_pred             cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC--CCcc------cccEEEEECCEEEEEcCCCCCCC
Confidence            222222  67788888764       2478888887654332111  1111      1112223567766663 2 1   


Q ss_pred             --CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeeccccccCCCCccC
Q 001358          957 --THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCL 1029 (1092)
Q Consensus       957 --~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1029 (1092)
                        +.+.+||..+.+-...-.......-.++ ..-+++.++.|+.+     ..+.+||+.+.+....    ...|..    
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----  243 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQE----  243 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSC----
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCc----
Confidence              3599999987754332111111111122 22377888888754     3477899888765422    112221    


Q ss_pred             cccceEEEECCCCCCEEEEEeCC--------------CcEEEEecCCCCCccccCC
Q 001358         1030 HVYPHAIAAHPLKPTQFAVGLTN--------------GEVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus      1030 ~v~~~~~~~~p~~~~~l~~~~~d--------------g~v~~w~~~~~~~~~~~~~ 1071 (1092)
                       ....+++..  ++.+++.|+.+              ..+.+||+  ...+|....
T Consensus       244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~  294 (318)
T 2woz_A          244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGML  294 (318)
T ss_dssp             -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEEE
T ss_pred             -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhhc
Confidence             111122222  35778887764              34667777  445698763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.51  E-value=0.43  Score=59.44  Aligned_cols=236  Identities=12%  Similarity=0.114  Sum_probs=135.0

Q ss_pred             ecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEE
Q 001358          342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ  421 (1092)
Q Consensus       342 ~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~  421 (1092)
                      .+|..+ ++|.-. ..++.|+|+++...+..+.+                    ..+|..=.|-.+..+-+++  +..|.
T Consensus        73 MnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~l~lVT--~~aVy  128 (1630)
T 1xi4_A           73 MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNTVALVT--DNAVY  128 (1630)
T ss_pred             cCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCeeEEEc--CCeEE
Confidence            466666 566543 57899999999887765332                    2467777787555443333  34599


Q ss_pred             EEEccCCCCccceEEeccc----ccceeEEEeeCCCCcEEEEEEe------CCCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          422 LYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       422 iwd~~~~~~~~~~~~l~~h----~~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      -|++.+......  .+..|    ...|..-..+++.+++ +++|=      -.|.+.+|..+.+. .+.+.||.+....+
T Consensus       129 HW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~  204 (1630)
T 1xi4_A          129 HWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQF  204 (1630)
T ss_pred             EeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhhee
Confidence            999975432221  22233    3457777888999963 33332      45788899866543 45566777665555


Q ss_pred             eecccCCccEEEE-Eec---CCeEEEEEcCCC---CceE-----EecCC----CCceEEEEEecCCCEEEEEecCCCCce
Q 001358          492 CPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----DYDAP----GLGCTRMAYSANGRRLFSCGTSKEGES  555 (1092)
Q Consensus       492 ~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~---~~~~-----~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1092)
                      .+...+....+++ +..   .+.++|-++...   ....     .+..+    ..-..++..++.-..+...+.    .|
T Consensus       205 ~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G  280 (1630)
T 1xi4_A          205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YG  280 (1630)
T ss_pred             ccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cc
Confidence            4432222222333 222   268899888653   1111     11111    112235666666666665553    67


Q ss_pred             eEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 001358          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  612 (1092)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~  612 (1092)
                      .+.++|+.||.++..-+-..   .+|...+......-+++....|.|.--.+.....
T Consensus       281 ~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i  334 (1630)
T 1xi4_A          281 YIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (1630)
T ss_pred             eEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence            89999999998875544333   4555444444444455555666665555544443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.35  E-value=1.6  Score=48.87  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCc--CCCCCceEEEEecC---CCEEEE--Ee---
Q 001358          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLL--VH---  955 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~s~d---g~~la~--~~---  955 (1092)
                      -...+.|+|.|||+++++-...+.|++++..++....  .........  ........++|+||   +..|.+  +.   
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~  103 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP  103 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence            3457799999999988865444568888765544322  111111110  01135779999996   555554  22   


Q ss_pred             ---------CCcEEEEEcCCc-------eeeee-eccCCCcCEEEEEEecCCCEEEEEeC
Q 001358          956 ---------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       956 ---------d~~v~lwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~s~  998 (1092)
                               ...|.-|+...+       +.+.. +..........|+|.|||.+.++.+.
T Consensus       104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                     134555555321       11111 11122235788999999998777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.25  E-value=3.8  Score=43.51  Aligned_cols=122  Identities=17%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ....++...-...+.++|.|||+ ++++-...|.|++++..++.......+.             .+..........|+|
T Consensus        22 ~~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~-------------~v~~~g~~GllGia~   87 (347)
T 3das_A           22 KVLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVP-------------GVSPSGEGGLLGIAL   87 (347)
T ss_dssp             EEEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT-------------TCCCBTTBSEEEEEE
T ss_pred             ceeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccC-------------ceeecCCCCceeeEe
Confidence            34445555555889999999998 6777655799999987666532110000             012234567889999


Q ss_pred             CCC---CCEEEEE-e--CCCEEEEEEccCCC----Cc---cceE-Eec-ccccceeEEEeeCCCCcEEEEEEe
Q 001358          405 SPD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG  462 (1092)
Q Consensus       405 spd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~~-~l~-~h~~~v~~~~~s~d~~~l~l~s~~  462 (1092)
                      +||   +.+|.+. +  .++.|.-|.+..+.    .+   +.+. .+. +....-..++|.|||.  ++++.+
T Consensus        88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G  158 (347)
T 3das_A           88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG  158 (347)
T ss_dssp             CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred             ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence            996   4445443 2  34567677766521    11   1111 121 1112346799999997  555543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.03  E-value=1.2  Score=48.08  Aligned_cols=141  Identities=6%  Similarity=-0.042  Sum_probs=67.5

Q ss_pred             CeEEEEEcCCce--eeEeecc-ccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEc--CCCceeeeeeeecCCCCcC
Q 001358          866 STILIYNARSSE--VISKLEG-HSKRVTGLVFSDALNILVSSGGD------AQIFVWDV--DGWGIQTCRSLQTPDGVMT  934 (1092)
Q Consensus       866 g~v~iwd~~~~~--~~~~l~~-h~~~V~~l~~spdg~~l~s~s~D------g~i~iwd~--~~~~~~~~~~~~~~~~~~~  934 (1092)
                      ..+.+||..+.+  .+..+.. ....- +++. -++++++.|+.+      ..+.++|+  .+.+..   .+....... 
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~---~~~~~~~~~-  241 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGA-AVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN---KLAPVSSPD-  241 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSC-EEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEE---ECCCSSTTT-
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccc-cEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEE---ecCCCCCCc-
Confidence            478999998764  3333321 11111 2222 256777777642      35777877  443322   222211110 


Q ss_pred             CCCCceEEEEecCCCEEEEE-eC----------------------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCC
Q 001358          935 LAPSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR  991 (1092)
Q Consensus       935 ~~~~v~~l~~s~dg~~la~~-~d----------------------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~  991 (1092)
                        ......+...++++++.+ .+                      ..+.+||..+.+-...-... ..+....+...+++
T Consensus       242 --~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~  318 (357)
T 2uvk_A          242 --GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS-QGRAYGVSLPWNNS  318 (357)
T ss_dssp             --CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS-SCCBSSEEEEETTE
T ss_pred             --ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC-CCcccceeEEeCCE
Confidence              112223444566766663 21                      24788998866533221111 11111223445888


Q ss_pred             EEEEEeCCC------cEEEEECCCCceEEe
Q 001358          992 MVFTSFVDG------TLSIHEASNLEVQCR 1015 (1092)
Q Consensus       992 ~l~t~s~Dg------~i~vwd~~~~~~~~~ 1015 (1092)
                      +++.|+.++      .|.++++++++....
T Consensus       319 i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          319 LLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             EEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            888898653      355668888877633

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.70  E-value=2.8  Score=46.79  Aligned_cols=163  Identities=12%  Similarity=0.087  Sum_probs=90.7

Q ss_pred             CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--eEeecc------ccCCeEEEEEcCC----CCEEEEEeC-----
Q 001358          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG-----  906 (1092)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~spd----g~~l~s~s~-----  906 (1092)
                      .....++|.| +++++++-...+.|++++..+++.  +..+..      ..+....|+|+||    +.+.++-+.     
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4567999999 888777544445798888765543  222321      2456789999995    444444432     


Q ss_pred             -------CCcEEEEEcCCC--ceeee-eeeecCCCCcCCCCCceEEEEecCCCEEEEEeCC-------------------
Q 001358          907 -------DAQIFVWDVDGW--GIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-------------------  957 (1092)
Q Consensus       907 -------Dg~i~iwd~~~~--~~~~~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~-------------------  957 (1092)
                             ...|.-+++..+  ..... .++........  .....++|.|||.+.++..|+                   
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~--H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~  183 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPT  183 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC--CCCCeEeECCCCeEEEEECCCCCCCccccccccccccccc
Confidence                   234555655432  11111 12221111111  246899999999988773221                   


Q ss_pred             ------------cEEEEEcC-Cce-----------eeeeeccCCCcCEEEEEEecCCCEEEEE-eCCCcEEEEECCCC
Q 001358          958 ------------HLAIYEAE-ELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1092)
Q Consensus       958 ------------~v~lwd~~-~~~-----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~-s~Dg~i~vwd~~~~ 1010 (1092)
                                  .=+|+.+. .+.           ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus       184 ~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G  260 (454)
T 1cru_A          184 QQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG  260 (454)
T ss_dssp             HHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred             cccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence                        11344332 222           122333344 457789999998866653 34555566666554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.70  E-value=4.9  Score=41.92  Aligned_cols=183  Identities=10%  Similarity=0.059  Sum_probs=101.3

Q ss_pred             EEeecCCCceEEEEEcCc-------------CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEEC
Q 001358          339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d-------------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~s  405 (1092)
                      +--++++|.++..+...+             ..|+..+++.++...                    +...  .  +.+|+
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~~--~--~~~~s  112 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDPD--P--CIYAS  112 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EECS--C--EEEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eecC--C--ccEEE
Confidence            345688998766665543             356777777665332                    1111  1  23778


Q ss_pred             CCCCEEEEEe--C--CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE
Q 001358          406 PDGSLLGVAY--S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1092)
Q Consensus       406 pdg~~las~~--~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~  481 (1092)
                      +++++|+...  .  ...|..-++.+.. ..   .+..+..    .+|+++++. +..+......|.+-++..+.....+
T Consensus       113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence            8999999876  2  3355555665432 22   2333332    467889985 2333334678888887776544333


Q ss_pred             ecCCcceEEEeecccCCccEEEEEecC--CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEE
Q 001358          482 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1092)
Q Consensus       482 ~~~~~~v~~i~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1092)
                      .+   ... ..+.  |++.+|+-....  ..|..-+++...... +..  ..+  ..++|++++|+.+....  ...|..
T Consensus       184 ~~---~~~-~~~~--P~g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~  250 (302)
T 3s25_A          184 DC---NCY-KPVV--LDDTNVYYMDVNRDNAIVHVNINNPNPVV-LTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV  250 (302)
T ss_dssp             CS---CEE-EEEE--EETTEEEEEEGGGTTEEEEECSSSCCCEE-CSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred             CC---Ccc-ceee--ecCCEEEEEEcCCCcEEEEEECCCCCeEE-EeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence            32   222 2233  344566655443  245555665544332 222  222  34889999998764321  356777


Q ss_pred             EeCCCCeE
Q 001358          560 WNESEGAI  567 (1092)
Q Consensus       560 wd~~~~~~  567 (1092)
                      -++.....
T Consensus       251 ~~~DG~~r  258 (302)
T 3s25_A          251 VKNDGTGF  258 (302)
T ss_dssp             EETTSCCC
T ss_pred             EECCCCcc
Confidence            77765443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.60  E-value=3.3  Score=46.18  Aligned_cols=195  Identities=11%  Similarity=0.099  Sum_probs=116.9

Q ss_pred             cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEEc--CCCCCEEEEEeCC-------CeE-----------
Q 001358          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMDD-------STI-----------  868 (1092)
Q Consensus       812 ~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--~~d~~~lasg~~d-------g~v-----------  868 (1092)
                      .||+||..-.  +.+|...++...++-+.+.-+ ...+..+.|-  | +..|++.+++.       |..           
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            4789998887  477989999988876665533 3577788876  6 66677776542       221           


Q ss_pred             -EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEcCC-------Cceee---
Q 001358          869 -LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQT---  922 (1092)
Q Consensus       869 -~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~i~iwd~~~-------~~~~~---  922 (1092)
                       ...|..+.+...++.- .+....+...++|++.++.+...               -+.++++..       |+...   
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence             1123333333333221 22333455678888888776542               255555421       11110   


Q ss_pred             --eeeeecCC----CC-----cCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCcee-------------eeeeccC
Q 001358          923 --CRSLQTPD----GV-----MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI  976 (1092)
Q Consensus       923 --~~~~~~~~----~~-----~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~-------------~~~~~~~  976 (1092)
                        ..++....    +.     .+.......+.++|||++++++  -+.++.++|++....             ....  .
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~--e  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP--E  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC--B
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec--c
Confidence              11111111    00     0111345679999999999995  567899999974321             1111  1


Q ss_pred             CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 001358          977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1092)
Q Consensus       977 h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~ 1010 (1092)
                      -.......+|.++|.-..|-.-|..|.-|++...
T Consensus       376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            2567788999999955556668999999999764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.46  E-value=0.095  Score=55.57  Aligned_cols=194  Identities=10%  Similarity=0.043  Sum_probs=104.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecC-CcceEEEe-ecccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCC----C
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLC-PHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G  529 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~i~-~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~----~  529 (1092)
                      +++.++.||.|.-.|.++|+.+.++... ..++.... .....++..++.. +.||.|..++..++.....+...    .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            5788999999999999999999988754 12332221 1111133344443 68999999988776444332211    1


Q ss_pred             CceEE---EEE-----ecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCc-----eEEEEEc-----CCCC
Q 001358          530 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD  591 (1092)
Q Consensus       530 ~~i~~---~~~-----s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~  591 (1092)
                      .++..   ..+     +..+..+++++.    ++.++..|..+|+.+..+..... ...     ..+....     ..+.
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSK-NGYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCB-CC--------------------CC
T ss_pred             cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCC-cccccccccccccccccccccCCC
Confidence            11111   000     014456666665    77899999999999988864321 010     0011110     1235


Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEeCCCC-CCCCc-----eEEEccCCCEEEEEeCCCeEEEEECCCCCeee
Q 001358          592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENP-----RICFNKNGTLLAVIANENRIKILETPESNSVD  658 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~-----~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~  658 (1092)
                      .++.+..+..+.+.+ ++|+ ...+..... ...+.     .-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            677777777777766 3443 211110000 00000     0001234555 557889999999988887654

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=94.17  E-value=0.037  Score=43.97  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001358            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS   59 (1092)
Q Consensus         5 ~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~   59 (1092)
                      ++|+-+=|++||..+||.+++.+|.+|.+++.+  ...=....|+=+|..++.+=++
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK   66 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   66 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence            578999999999999999999999999998774  2223566777788877776443

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.80  E-value=9.3  Score=41.68  Aligned_cols=260  Identities=12%  Similarity=0.065  Sum_probs=123.4

Q ss_pred             CCCeeEEEEec--CCCEEEEEeCC----eEEEEEcCCceeeEEec------C--------CCCCeEEEEEcCCC-CCEEE
Q 001358          802 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIM------P--------PSPTATSLAFNPHD-NNVIA  860 (1092)
Q Consensus       802 ~~~v~~~~~s~--dg~~l~~~sdg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la  860 (1092)
                      ...|.++++.|  ++.+++.+..|    .|... ...++.-..+.      .        ....|.++++.|.+ ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            45688999998  66666666554    33332 12222212211      1        11247789998733 44556


Q ss_pred             EEeCCCeEEEEEcCCceeeEeecc-------------------ccCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcCCCce
Q 001358          861 IGMDDSTILIYNARSSEVISKLEG-------------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI  920 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~spd-g~~l~s~s~Dg~i~iwd~~~~~~  920 (1092)
                      ++...+.|...+ +.|+.-..+..                   ....|.+|.+.|. ...|..+..++.|...+-.... 
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~t-  210 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGTD-  210 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTSS-
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCCC-
Confidence            566566555442 22222111110                   1235789999873 3444444444434433222211 


Q ss_pred             eeeeeeec-CCC-Cc-----CCCCCceEEEEecC-CCEEEEEeCCcEEEEEcCCceeeeeeccCC-C---cCEEEEEEec
Q 001358          921 QTCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC  988 (1092)
Q Consensus       921 ~~~~~~~~-~~~-~~-----~~~~~v~~l~~s~d-g~~la~~~d~~v~lwd~~~~~~~~~~~~~h-~---~~v~~l~fs~  988 (1092)
                        ...+.. ... ..     .....+.++++.|+ ...|.++..+.|...+- .++....+...- .   ..+..++++|
T Consensus       211 --W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          211 --WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ  287 (394)
T ss_dssp             --CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred             --ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence              111111 000 00     00124788999986 35566665665655542 233322222111 1   3456788876


Q ss_pred             -CCCEEEEEeC-----------CCcEEEEECCC-CceEEeeccccccCCCCccCcccceEEEECCCCCCEEEEEeCCCcE
Q 001358          989 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1055 (1092)
Q Consensus       989 -dg~~l~t~s~-----------Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v 1055 (1092)
                       +...|..++.           ++...+|...+ |+.-..+.  .-++....-..+...+++++|.++..|.+++.++. 
T Consensus       288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~-  364 (394)
T 3b7f_A          288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGE-  364 (394)
T ss_dssp             SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSC-
T ss_pred             CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCe-
Confidence             3333444432           33345665554 33333332  11222100011222357788865566777776665 


Q ss_pred             EEEecCCCCCccccCC
Q 001358         1056 YVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus      1056 ~~w~~~~~~~~~~~~~ 1071 (1092)
                       +|.-.+.+..|....
T Consensus       365 -l~~S~D~G~tW~~~~  379 (394)
T 3b7f_A          365 -IWASADEGEHWQCIA  379 (394)
T ss_dssp             -EEEESSTTSBCEEEE
T ss_pred             -EEEECCCCCCceEcc
Confidence             455556777787653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.48  E-value=5  Score=47.75  Aligned_cols=196  Identities=10%  Similarity=0.104  Sum_probs=106.7

Q ss_pred             cCCCEEEEEeC-----CeEEEEEcCCceeeEEe--------cCCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001358          812 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN  872 (1092)
Q Consensus       812 ~dg~~l~~~sd-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd  872 (1092)
                      .++.+++.|+.     +.+.+||..+.+-...-        ......-.++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            56677776652     45889998776433222        11112334455543 466777777543      588999


Q ss_pred             cCCce--eeEeeccccCCeEEEEEcCCCCEEEEEeCCC--cEEEEEcCCCceeeeeeee-cCCCCcCCCCCceEEEEecC
Q 001358          873 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD  947 (1092)
Q Consensus       873 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~d  947 (1092)
                      ..+.+  .+..+......- +++...++++++.||.++  .+.+||..+.......... .+....    ...++.+..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~  549 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV  549 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence            88753  222222111111 223324888999988765  6899999886533322100 111111    1234566666


Q ss_pred             -CCEEEEE-e--C-----CcEEEEEcCCcee-----eeeecc--CCCcCEEEEEEecCCCEEEEEeCC--------CcEE
Q 001358          948 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 1003 (1092)
Q Consensus       948 -g~~la~~-~--d-----~~v~lwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~t~s~D--------g~i~ 1003 (1092)
                       +++++.| .  +     +.+.+||..+...     ......  .....-.+++...++++++.||.+        ..|.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             5555654 2  2     3589999987761     111111  111111123333447888888743        4599


Q ss_pred             EEECCCCceE
Q 001358         1004 IHEASNLEVQ 1013 (1092)
Q Consensus      1004 vwd~~~~~~~ 1013 (1092)
                      +||+.+....
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999988765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.08  E-value=18  Score=40.29  Aligned_cols=56  Identities=21%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCEEEEEEccCCCCccceEEec---------ccccceeEEEeeCC
Q 001358          397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP  452 (1092)
Q Consensus       397 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d  452 (1092)
                      .....|+|.|||. .|+++...|.|++++.........+..+.         ........|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4567899999996 55566788999999754331111111111         11456788999997

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.91  E-value=30  Score=40.81  Aligned_cols=246  Identities=9%  Similarity=0.027  Sum_probs=123.7

Q ss_pred             EEe-ecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCC-----CcEEEEEECCCC
Q 001358          339 SMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSPDG  408 (1092)
Q Consensus       339 ~v~-~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~-----~~V~~l~~spdg  408 (1092)
                      .+. ++||+++++++-|..|    .++++|+.+++.+.. .|. ..              ...     .....++|..++
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d~~  196 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWINKD  196 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEETT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEECCC
Confidence            344 8999997666555443    599999999976632 110 00              000     011234666333


Q ss_pred             CEEEEE----------eCCCEEEEEEccCCCCccceEEecccccce-eEEEeeCCCCc---EEEEEEeCC---CcEEEEE
Q 001358          409 SLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQ---ISVITCGDD---KTIKVWD  471 (1092)
Q Consensus       409 ~~las~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v-~~~~~s~d~~~---l~l~s~~~d---~~i~vwd  471 (1092)
                      ..+++.          +....|+.|.+.+...-.. ..+.+....+ .....+++++.   ..+++.+.+   ..+.+.|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  275 (711)
T 4hvt_A          197 TIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILD  275 (711)
T ss_dssp             EEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEE
T ss_pred             EEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEc
Confidence            333321          1124688888776532221 1333333332 34556777774   235554422   3456666


Q ss_pred             CCC--CceeEEEecCCcceEEEeecccCCccEEEEE----------ecCCeEEEEEcCCC-------CceEE-e-cCCCC
Q 001358          472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPGL  530 (1092)
Q Consensus       472 ~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~-------~~~~~-~-~~~~~  530 (1092)
                      ...  ++ +..+.......  +..  ..++.+++..          ...+.|...++...       ..... + .....
T Consensus       276 ~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (711)
T 4hvt_A          276 TKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE  350 (711)
T ss_dssp             CSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE
T ss_pred             CCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC
Confidence            543  33 22232111111  111  1133444422          24677888888763       12222 2 22344


Q ss_pred             ceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe-EEEE-EeeccccCCceEEEEEcCCCCEEEE-Ee---CCCeEEE
Q 001358          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKI  604 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~s---~dg~i~i  604 (1092)
                      .+..+.+..+ ..+++...  ++...++++|+.++. .... +....  .+.+......+++..++. .+   .-+.+..
T Consensus       351 ~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~  425 (711)
T 4hvt_A          351 VFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYL  425 (711)
T ss_dssp             EEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEE
T ss_pred             eEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEE
Confidence            6777888765 34444433  446678999987775 2233 22221  145666666677655544 33   3467888


Q ss_pred             EECCCCce
Q 001358          605 WDMNKVQL  612 (1092)
Q Consensus       605 wd~~~~~~  612 (1092)
                      +|+. ++.
T Consensus       426 ~d~~-~~~  432 (711)
T 4hvt_A          426 WVKT-HEL  432 (711)
T ss_dssp             ECTT-SCE
T ss_pred             EeCC-CcE
Confidence            8876 443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.89  E-value=15  Score=37.78  Aligned_cols=222  Identities=13%  Similarity=0.103  Sum_probs=108.6

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .|..++....-  .++. . ||.|..|-......+.. +                  ......|..++...+-.. +. .
T Consensus        25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-p------------------~~~~~~i~~ia~G~~hs~-~l-~   79 (282)
T 3qhy_B           25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-P------------------AATQSGVDAIAAGNYHSL-AL-K   79 (282)
T ss_dssp             SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-C------------------GGGGSCCCEEEECSSEEE-EE-E
T ss_pred             CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-C------------------ccCCCCEEEEEeCCCEEE-EE-E
Confidence            45666655443  2333 3 78888887665433321 0                  001235666666543332 33 4


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                       ||.|..|-.....++...   ..-...|..++...+-.    +.-. ||.|..|-....-.+.........|..++.- 
T Consensus        80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs----~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G-  149 (282)
T 3qhy_B           80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS----YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG-  149 (282)
T ss_dssp             -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE----EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred             -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE----EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence             899999987654333211   11134677777665432    3334 8999999754322111111123346655532 


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                        ....++ -. ||.+..|-.......-.-......|..++...+...++   .    ++.|+.|-....-.+.. ... 
T Consensus       150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~-p~~-  216 (282)
T 3qhy_B          150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTV-PTE-  216 (282)
T ss_dssp             --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCC-CGG-
T ss_pred             --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCC-Ccc-
Confidence              222333 33 79999996654333211111123455555443332222   2    44588886543221110 000 


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 001358          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1092)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~  609 (1092)
                       ....|..++.....  .++.. ||.++.|-...
T Consensus       217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR  246 (282)
T ss_dssp             -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred             -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence             12356666665443  33333 88999986554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.52  E-value=18  Score=37.53  Aligned_cols=181  Identities=8%  Similarity=0.090  Sum_probs=101.2

Q ss_pred             EEECCCCCEEEEEeCC--------------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEE--eCCC
Q 001358          402 VVWSPDGSLLGVAYSK--------------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDK  465 (1092)
Q Consensus       402 l~~spdg~~las~~~d--------------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~--~~d~  465 (1092)
                      --++++|++|+.+...              ..|+..++.+++...    +...    .+..|+++++.++++..  ....
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~----~~~~~s~~g~~Iy~~~~~~~~~~  129 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD----PCIYASLIGNYIYYLHYDTQTAT  129 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS----CEEEEEEETTEEEEEEESSSSCE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC----CccEEEEeCCEEEEEeecCCCCc
Confidence            3457899999887543              467777877764221    2221    12377889995333331  2344


Q ss_pred             cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEE
Q 001358          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       466 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1092)
                      .|..-++... ....+..+..    ..+.+  +++.|+-.+. ...|.+-+++..........   ... ..+.|++.+|
T Consensus       130 ~Iy~~~~dGs-~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~i  198 (302)
T 3s25_A          130 SLYRIRIDGE-EKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNV  198 (302)
T ss_dssp             EEEEEETTSC-CCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEE
T ss_pred             eEEEEECCCC-CeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEE
Confidence            5666666543 3444544432    23333  4455554444 56788777776554444332   222 3466999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCc
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQ  611 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~--dg~i~iwd~~~~~  611 (1092)
                      +......  ...|..-++..+.. ..+..     ..+  ..|+|++.+|+-++.  .+.|..-++....
T Consensus       199 y~t~~~~--~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          199 YYMDVNR--DNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             EEEEGGG--TTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             EEEEcCC--CcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            8765422  24677777776553 33322     223  347888888876532  3556666665433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.02  E-value=11  Score=44.70  Aligned_cols=201  Identities=13%  Similarity=0.057  Sum_probs=102.5

Q ss_pred             CCCCcEEEEEEeCC----CcEEEEECCCCceeEEE-e-----cCCcce-EEEeecccCCccEEEEEecCC------eEEE
Q 001358          451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAPV-YSLCPHAKENIHFIFSISVDG------KIKA  513 (1092)
Q Consensus       451 ~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~~v-~~i~~~~~~~~~~l~s~~~dg------~i~v  513 (1092)
                      .++.  +++.||.+    ..+.+||..+++....- .     ...... .+++.. ..++.+++.|+.++      .+.+
T Consensus       396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred             ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence            4455  56666643    46888898877644322 1     011111 112221 11456777776543      4677


Q ss_pred             EEcCCCCceEEecCCCCc-eEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEee--ccccCCceEEEEEcCC-
Q 001358          514 WLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA-  589 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-  589 (1092)
                      ||..+..-...-..+... -.+++...+++.++.||.+...  .+.+||+.+..-...-..  .........++.+..+ 
T Consensus       473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            777664322211111111 1223332488888888765543  799999988765433220  1101122333555555 


Q ss_pred             CCEEEEEeC--C-----CeEEEEECCCCc------eEEEEeCCCCCCCCceEEEccCCCEEEEEeC--------CCeEEE
Q 001358          590 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKNGTLLAVIAN--------ENRIKI  648 (1092)
Q Consensus       590 ~~~l~~~s~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~--------dg~i~i  648 (1092)
                      +..++.|+.  +     ..+.+||+.+..      .............-..++...++++++.|+.        ...+.+
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence            555566664  2     458899998877      2222221100011123333344777777774        345888


Q ss_pred             EECCCCCe
Q 001358          649 LETPESNS  656 (1092)
Q Consensus       649 w~~~~~~~  656 (1092)
                      ||..+.+.
T Consensus       631 yd~~t~~W  638 (695)
T 2zwa_A          631 LDPLSETL  638 (695)
T ss_dssp             EETTTTEE
T ss_pred             EECCCCeE
Confidence            88877643

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.99  E-value=22  Score=38.08  Aligned_cols=171  Identities=12%  Similarity=0.084  Sum_probs=92.1

Q ss_pred             cEEEEECCCC--ceeEEEecC------CcceEEEeec-ccC-----CccEEEEEecCCeEEEEEcCCCCceEEec----C
Q 001358          466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE-----NIHFIFSISVDGKIKAWLYDSLGARVDYD----A  527 (1092)
Q Consensus       466 ~i~vwd~~~~--~~~~~~~~~------~~~v~~i~~~-~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----~  527 (1092)
                      .|.+||+.++  +.++++.-.      ...+..+.+. ..+     ++...++-+..+.|.|+|+.+++......    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5778888888  888776532      3356777776 211     22233444456789999998776544331    1


Q ss_pred             C--------------CCceEEEEEecC----CCEEEEEecCCCCceeEEEEe---CCCCeEEE--EEeeccccCCceEEE
Q 001358          528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEGAIKR--TYQGLQLQHNSVSVV  584 (1092)
Q Consensus       528 ~--------------~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd---~~~~~~~~--~~~~~~~~~~~v~~~  584 (1092)
                      .              ...+..++++|+    ++.|+.....+.   .++-..   ++......  ...|.......-..+
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~  280 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL  280 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence            1              126788999998    777777654321   122221   11111111  112222001233455


Q ss_pred             EEc-CCCCEEEEEeCCCeEEEEECCC-C---ceEEEEeCCCCCCCCceEEEccCCCEEEE
Q 001358          585 HFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1092)
Q Consensus       585 ~~~-~~~~~l~~~s~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  639 (1092)
                      ++. .+|..+++--+.+.|..|+..+ .   .....+...........+.+.++|.+.+.
T Consensus       281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~  340 (381)
T 3q6k_A          281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM  340 (381)
T ss_dssp             EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred             EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence            675 5666666667888999999875 1   22333332223334455666555544333

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=89.52  E-value=20  Score=42.29  Aligned_cols=241  Identities=9%  Similarity=0.009  Sum_probs=118.4

Q ss_pred             ECCCCCEEEEE-eCC----CEEEEEEccCCCCccceEEecccc-----cceeEEEeeCCCCcEEEEEE----------eC
Q 001358          404 WSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITC----------GD  463 (1092)
Q Consensus       404 ~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~l~~h~-----~~v~~~~~s~d~~~l~l~s~----------~~  463 (1092)
                      ++||+++++.+ |..    ..++++|+++++.+.....-....     .....++|..++.  ++++.          +.
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~~~  214 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSSLY  214 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTTSS
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcCcCCC
Confidence            89999998876 222    369999999987553211100000     0123457874443  44432          12


Q ss_pred             CCcEEEEECCCCc--eeEEEecCCcceE-EEeecccCCcc---EEEEEecC---CeEEEEEcCCCC-ceEEecCCCCceE
Q 001358          464 DKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLG-ARVDYDAPGLGCT  533 (1092)
Q Consensus       464 d~~i~vwd~~~~~--~~~~~~~~~~~v~-~i~~~~~~~~~---~l~s~~~d---g~i~vwd~~~~~-~~~~~~~~~~~i~  533 (1092)
                      ...|+.|.+-+..  -...+.+....+. +.....++...   .+++.+.+   ..+.+.+.+... ....+..+...  
T Consensus       215 ~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  292 (711)
T 4hvt_A          215 PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA--  292 (711)
T ss_dssp             BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC--
T ss_pred             CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc--
Confidence            3468888776652  2334444444432 22222222221   35544423   335555554322 22333333221  


Q ss_pred             EEEEecCCCEEEEEecC------CCCceeEEEEeCCCCe-------EEEE-EeeccccCCceEEEEEcCCCCEEEEEeCC
Q 001358          534 RMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDD  599 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~s~d  599 (1092)
                      .+..+.++.+++....+      .-..+.|...|+.++.       ..+. +....  ...+..+.+..+ ..+++...+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~~~  369 (711)
T 4hvt_A          293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATYDN  369 (711)
T ss_dssp             EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEEET
T ss_pred             eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEEEC
Confidence            13345566665543221      0125568888887642       1222 32222  346778888875 566666666


Q ss_pred             Ce--EEEEECCCCc-eEEE-EeCCCCCCCCceEEEccCCCEE-EEEeC---CCeEEEEECC
Q 001358          600 HV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP  652 (1092)
Q Consensus       600 g~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iw~~~  652 (1092)
                      +.  +.++++.++. .... +..... ..+.....++++..+ ++.+.   -+.+..++..
T Consensus       370 ~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          370 VVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             TEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             CEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            64  6677766664 2233 333321 224445555665544 33332   3566677665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=88.60  E-value=14  Score=39.64  Aligned_cols=172  Identities=13%  Similarity=0.168  Sum_probs=94.2

Q ss_pred             eEEEEEcCCc--eeeEEecCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCceeeEeec-----
Q 001358          824 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE-----  883 (1092)
Q Consensus       824 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~-----  883 (1092)
                      +|.+||+.+.  +.++++.-+      ...+..+++.   |.   ++.++..+. ..+-|.|+|+.+++.-+.+.     
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4667888887  777765422      2456778877   21   134444444 45689999999886544331     


Q ss_pred             ---------cc----cCCeEEEEEcCC----CCEEEEEeCCCcEEEEEcCCCceeee---eeeecCCCCcCCCCCceEEE
Q 001358          884 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ  943 (1092)
Q Consensus       884 ---------~h----~~~V~~l~~spd----g~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~  943 (1092)
                               |.    ...|..|++||+    ++.|....-.+ -++|.+.+.-....   ..++.. +.......-..++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~  281 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA  281 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence                     11    246888999998    77777766555 35666543211100   001100 0000001233456


Q ss_pred             Ee-cCCCEEEE-EeCCcEEEEEcCC-c---eeeeeeccC-CCcCEEEEEEecCCCEEEEEe
Q 001358          944 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       944 ~s-~dg~~la~-~~d~~v~lwd~~~-~---~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      +. .+|.+.++ ...+.|..|+..+ .   .....+... .-..+..+.+.++|.+.++++
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            65 56776666 4778899999875 1   111221111 223466677766776555543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.33  E-value=31  Score=37.31  Aligned_cols=205  Identities=10%  Similarity=0.093  Sum_probs=93.3

Q ss_pred             CCEEEEEeCCCeEEEEEcCC-ceeeEee--ccccCCeEEEEEcC--CCCEEEEEeCCC----cEEEEEcCCCceeeeeee
Q 001358          856 NNVIAIGMDDSTILIYNARS-SEVISKL--EGHSKRVTGLVFSD--ALNILVSSGGDA----QIFVWDVDGWGIQTCRSL  926 (1092)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~-~~~~~~l--~~h~~~V~~l~~sp--dg~~l~s~s~Dg----~i~iwd~~~~~~~~~~~~  926 (1092)
                      ...|.+|+..| +.+++... ++.-..+  ......|.+|++.|  ++.+++. +..|    .|...+ +.++  ....+
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~-D~G~--tW~~~   96 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSD-DGGG--NWTEA   96 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEES-STTS--CCEEC
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEE-ecCCCCCccEEEeC-CCCC--CceEC
Confidence            44677788777 55555432 2211111  11235699999998  5555554 4343    333322 2222  11111


Q ss_pred             ecC---CCCcC-----CCCCceEEEEec---CCCEEEEEeCCcEEEEEcCCceeeeeecc------------------CC
Q 001358          927 QTP---DGVMT-----LAPSETHIQFHK---DQTRFLLVHETHLAIYEAEELTCLKQWFP------------------IS  977 (1092)
Q Consensus       927 ~~~---~~~~~-----~~~~v~~l~~s~---dg~~la~~~d~~v~lwd~~~~~~~~~~~~------------------~h  977 (1092)
                      ...   .....     ....|.++++.|   .+.+.+.+..+.|...+ ..|+.......                  ..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~  175 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPD  175 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CC
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCC
Confidence            111   00000     001477889986   45555555556554432 22222221110                  11


Q ss_pred             CcCEEEEEEecC-CCEEEEEeCCCcEEEEECC-CCceEEeecc---ccccCCCCccCcccceEEEECCCCCCEEEEEeCC
Q 001358          978 SVPISQATFSCD-CRMVFTSFVDGTLSIHEAS-NLEVQCRILS---TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1052 (1092)
Q Consensus       978 ~~~v~~l~fs~d-g~~l~t~s~Dg~i~vwd~~-~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d 1052 (1092)
                      ...+.+|.+.|. ...|..+..++.  +|... .|+.-..+..   ..+++...........+++++|.++..+.++...
T Consensus       176 ~~~i~~i~~d~~~~~~l~vg~~~gg--l~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~  253 (394)
T 3b7f_A          176 GPKMHSILVDPRDPKHLYIGMSSGG--VFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC  253 (394)
T ss_dssp             CCEEEEEEECTTCTTCEEEEEETBE--EEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT
T ss_pred             CCceeEEEECCCCCCEEEEEECCCC--EEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC
Confidence            235788999873 344444544444  33333 3333222211   0111211000011234678888656777777655


Q ss_pred             CcEEEEecCCCCCccccCC
Q 001358         1053 GEVYVIEPNEPGDTWAVLP 1071 (1092)
Q Consensus      1053 g~v~~w~~~~~~~~~~~~~ 1071 (1092)
                      |   ||...+.+..|....
T Consensus       254 g---l~~s~D~G~tW~~~~  269 (394)
T 3b7f_A          254 G---IYRMDRREGVWKRIG  269 (394)
T ss_dssp             E---EEEEETTTTEEECGG
T ss_pred             e---EEEeCCCCCcceECC
Confidence            4   444455666676553

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=87.56  E-value=27  Score=35.71  Aligned_cols=225  Identities=12%  Similarity=0.042  Sum_probs=115.5

Q ss_pred             CeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec
Q 001358          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1092)
                      .|..++.... ..++.. +|.+..|-......+..-......|..++...  ...++. . ||.|+.|-....-.+..-.
T Consensus        25 ~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            4556665433 233333 78888887654322111111224677888764  334444 5 9999999866532221111


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEE
Q 001358          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd  963 (1092)
                      .-...|..++...+  +.+... ||.|..|-........     .+....   ..|..++...+...++ . |+.|+.|-
T Consensus        99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-----~~~~~~---~~i~~i~~G~~~~~~l-~-~G~v~~wG  165 (282)
T 3qhy_B           99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-----VPAEAQ---SGVTALDGGVYTALAV-K-NGGVIAWG  165 (282)
T ss_dssp             GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE-E-TTEEEEEE
T ss_pred             ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-----CCccCC---CCeEEEEcccCEEEEE-E-CCEEEEec
Confidence            12346888877644  333344 9999999766422111     010011   2466665544443332 3 78899987


Q ss_pred             cCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCC
Q 001358          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1043 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~ 1043 (1092)
                      ....-.+.... .-...|..++...+- .++.  .||.|+.|=......+.       .|.. ....|.  .++.-.  .
T Consensus       166 ~n~~gqlg~p~-~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~--~  229 (282)
T 3qhy_B          166 DNYFGQTTVPA-EAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE--W  229 (282)
T ss_dssp             CCTTSTTSCCG-GGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--S
T ss_pred             CCCCCCCCCce-ecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--C
Confidence            65432222111 113567777654333 2333  59999999655432221       0100 012233  344332  2


Q ss_pred             CEEEEEeCCCcEEEEecCCCCC
Q 001358         1044 TQFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1044 ~~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      ..++..  ||.|+.|--.+.++
T Consensus       230 h~~al~--~g~v~~wG~n~~gq  249 (282)
T 3qhy_B          230 YSLALK--NGKVIAWGSSRTAP  249 (282)
T ss_dssp             CEEEEE--TTEEEEESTTCCCC
T ss_pred             EEEEEE--CCEEEEecCCCCcc
Confidence            344444  99999999887664

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=84.55  E-value=0.83  Score=40.88  Aligned_cols=55  Identities=15%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccc
Q 001358           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDH  127 (1092)
Q Consensus        72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~  127 (1092)
                      ++|.|+-+.||||+..|...+|..++++.-..+... .+..++|+.+.......++
T Consensus        33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n   87 (138)
T 2j4b_A           33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHEN   87 (138)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhC
Confidence            899999999999999999999999999865555555 7777777776665554443

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=83.12  E-value=1.3  Score=40.58  Aligned_cols=57  Identities=12%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001358           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE  128 (1092)
Q Consensus        72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  128 (1092)
                      ++|.|+-+.||||+..|...+|..+|++.-..+.....+..++|+.+.......+++
T Consensus        52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~  108 (156)
T 2nxp_A           52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNE  108 (156)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcH
Confidence            899999999999999999999999999855444444567777887777665554443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.91  E-value=58  Score=34.05  Aligned_cols=158  Identities=8%  Similarity=0.085  Sum_probs=90.5

Q ss_pred             CCCeeEEEEec---CCCEEEEEe-CCeEEEEEcCCceee-------EEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001358          802 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTI-------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1092)
Q Consensus       802 ~~~v~~~~~s~---dg~~l~~~s-dg~i~iwd~~~~~~~-------~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1092)
                      ...|.++..-+   +..+++..+ .|.++-..+......       ..+.. ...+..+.... ....|+..+..|.+..
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r  171 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR  171 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence            34455543333   466777776 699998887653322       22333 34555555544 4567788889999888


Q ss_pred             EEcC--C---------ceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceee-----eeeeecCCCCcC
Q 001358          871 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT  934 (1092)
Q Consensus       871 wd~~--~---------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~  934 (1092)
                      +...  .         |...-.+. ....|.++...+++..|+.++..|.++.-.+..-....     ...+......  
T Consensus       172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~--  248 (327)
T 3uc1_A          172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR--  248 (327)
T ss_dssp             EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred             EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence            8776  2         11112232 34567777777777789999999999988876532211     1111111101  


Q ss_pred             CCCCceEEEEe-cCCCEEEEEeCCcEEEEEcCC
Q 001358          935 LAPSETHIQFH-KDQTRFLLVHETHLAIYEAEE  966 (1092)
Q Consensus       935 ~~~~v~~l~~s-~dg~~la~~~d~~v~lwd~~~  966 (1092)
                        +.+..+... .+...++++.+|.+.-++...
T Consensus       249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~  279 (327)
T 3uc1_A          249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ  279 (327)
T ss_dssp             --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred             --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence              134444333 334445557777777777653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.24  E-value=77  Score=35.07  Aligned_cols=105  Identities=13%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             CeeEEEEecCCC--EEEEEeCCeEEEEEcCCce---eeEEecC---------CCCCeEEEEEcCC---CCCEEEEEeC--
Q 001358          804 AVPCFALSKNDA--YLFSASGGVISLYIVMTFK---TILTIMP---------PSPTATSLAFNPH---DNNVIAIGMD--  864 (1092)
Q Consensus       804 ~v~~~~~s~dg~--~l~~~sdg~i~iwd~~~~~---~~~~~~~---------~~~~i~~l~~s~~---d~~~lasg~~--  864 (1092)
                      ....|+|.|||.  ++++-..|.|++++.....   .+..+..         .......++|+|+   ++.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            457899999995  7766668999999754221   2222211         1356788999992   2333333221  


Q ss_pred             C----------CeEEEEEcCC----------ceeeEeec--cccCCeEEEEEcCCCCEEEEEeCCC
Q 001358          865 D----------STILIYNARS----------SEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA  908 (1092)
Q Consensus       865 d----------g~v~iwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg  908 (1092)
                      +          ..|.-|.+..          .+.+..+.  ........|+|.|||.+.++.+..+
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1          1344455532          12232222  1112357899999999988877644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1092
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-12
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	9e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	8e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.0 bits (193), Expect = 3e-16
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 435
           K+WD+                  +N + + P+G+           +L+      +     
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495
             +   G +  ++FS   + +  +   DD    VWDA+   R     GH   V  L    
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 496 KENIHFIFSISVDGKIKAW 514
                 + + S D  +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.5 bits (184), Expect = 4e-15
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 516
           ++   D + K+WD   G    +F GH + + ++C     N     + S D   +      
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257

Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
           D       +D    G T +++S +GR L +             W+  +        G   
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310

Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
             N VS +        +     D  +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 8e-15
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 754 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
           +  V  +   P   L +S         +L+  R G        T +  +  +       N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237

Query: 814 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870
                + S      +            +        TS++F+     ++  G DD    +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296

Query: 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           ++A  ++    L GH  RV+ L  +D    + +   D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 2e-10
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
                D  +   G  D++  +++ R         GH   +  + F    N   +   DA  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 911  FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 969
             ++D+         S       +T       + F K     L  ++  +  +++A +   
Sbjct: 251  RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 970  LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
                       +S    + D   V T   D  L I
Sbjct: 305  AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +  + W  D  LL  A     + ++  +  +       I      V   A++     ++
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
                +  +I       G+   S E  G   Y        + + I + S D     W  +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +      +         ++ + + R   S       ++    W+  EG  ++T+ G    
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225

Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637
            + ++ + F    +      DD   +++D+   Q L T      +     + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
               ++    + +  +++         + +  L V         G  +  + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
           QT     S   ++ F P  +           TG  D                        
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
            T    +    +  V +S  G LL   Y      ++         +   +  H   V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318

Query: 448 AFSAPCKQISVITCGDDKTIKVWD 471
             +     +   T   D  +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
           R +  +  H+  +  + +    + +  ++   D  + +WD+ T ++ ++     + V + 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
                 + +++    +D     +   +    V       G T               TS 
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
              +  +   E+                 V  +         ++   D   K+WD+ +  
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
              T            ICF  NG   A  +++   ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 8e-06
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 882
             L+ V       T         ++ F P + N  A G DD+T  +    A    +    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942
           +     +T + FS +  +L++   D    VWD           L   D  +      + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318

Query: 943 QFHKDQTRFL 952
               D     
Sbjct: 319 GVTDDGMAVA 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 4e-15
 Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
           +  H   V  + F      +  ++  +D TIKVWD  TG    + +GH   V  +     
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 497 ENIH----------------------------------------FIFSISVDGKIKAWLY 516
             +                                          I S S D  IK W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
            +      +         +  + +G  + SC   +     +  W  +    K   +  + 
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186

Query: 577 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
               +S                           +L+   D  IK+WD++    L T+   
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679
                   + F+  G  +   A++  +++ +      +         +  L  +  +   
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 680 GAGIANGSVSV 690
             G  + +V V
Sbjct: 305 VTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 7e-15
 Identities = 44/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)

Query: 323 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 370
           P+   +  + G  SP   + FHP   ++++  +      +WD  +G              
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 371 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418
                                +           +     +V+ V   P+G  +  A    
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478
            ++++                H   V  +  +     I   +C +D+T++VW   T    
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178

Query: 479 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 520
                H   V  +    + +                    F+ S S D  IK W   +  
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580
             +           + + + G+ + SC      +  L  W+       +T        + 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNA---HEHF 291

Query: 581 VSVVHFDTAKDQILAAGDDHVIKIWD 606
           V+ + F      ++    D  +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801
            N  G  I + +++    +W     +          V   +          +++ T S  
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209

Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
                     K   +L S S    I ++ V T   ++T++        + F+      I 
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
              DD T+ +++ ++   +  L  H   VT L F      +V+   D  + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 806 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 853
                +++   + S S    + +++V T +    +         +++ P           
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 854 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
                        +  G  D TI +++  +   +  L GH   V G++F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
            D  + VWD      +  ++L   +  +      T + FHK     +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 17/170 (10%), Positives = 54/170 (31%), Gaps = 9/170 (5%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
            T + F+P   +V+    +D+TI +++  + +    L+GH+  V  + F  +  +      
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
                         +   +  +    +     + + +    +    +             +
Sbjct: 74   --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 967  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
                 + F      +     + D  ++ +   D T+ +   +  E +  +
Sbjct: 132  TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (109), Expect = 1e-05
 Identities = 31/187 (16%), Positives = 54/187 (28%), Gaps = 20/187 (10%)

Query: 871  YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930
            +  R  E  + L GH   VT ++F    +++VS+  DA I VWD +       R+L+   
Sbjct: 3    WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59

Query: 931  GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 990
                   S   I F                     +     +        +S  +   + 
Sbjct: 60   D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 991  RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1050
              + ++  D T+ + E                   T   H     +       T  A   
Sbjct: 114  DHIVSASRDKTIKMWEVQTGYCVK-----------TFTGHREWVRMVRPNQDGTLIASCS 162

Query: 1051 TNGEVYV 1057
             +  V V
Sbjct: 163  NDQTVRV 169

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 6e-14
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)

Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
               ++   P     +  G+      +WD  +G  +   + +                  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255

Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 445
              SV  VV++ DG  +        V+L+     ++       ++             V 
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 501
            +A +   + I  ++   D+ +  WD  +G+     +GH   V S+      ++      
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 502 IFSISVDGKIKAW 514
             + S D K + W
Sbjct: 371 FATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 8e-14
 Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)

Query: 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 596
             + + +      +  + +++ +N +            L H + V  V F     + LA 
Sbjct: 22  DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79

Query: 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656
           G +   +++ ++   L+  +       ++P                          E+ +
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113

Query: 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716
             ++      +R +  +P     G  +A G+        +    +I +  +   +    L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
              PS  + +              T               V +     +     S +   
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 823
           +V           +    + + +  +++V     +++   + S S               
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
                   +    +T +       S+A    ++  I  G  D  +L ++ +S   +  L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

Query: 884 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 915
           GH   V  +  ++        N+  +  GD +  +W  
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (161), Expect = 4e-12
 Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
              ++ +S    + F       L  G N   T ++ V+    L  R              
Sbjct: 56  HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
            T+      + +  V +SPDG  L       +++++         +++ +       +  
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
           +         +++   D+T+++WD  TG  + +                    +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225

Query: 508 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
           D  ++ W  ++       D+              + ++ +G+ + S    +  + + ++ 
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

Query: 561 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             ++   K    G          + V  V      + IL+   D  +  WD      L  
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345

Query: 616 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 648
           +         +             + A  + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 903
             +P D   IA G  D  + ++++ +  ++ +L+       GH   V  +VF+     +VS
Sbjct: 212  VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 904  SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 958
               D  + +W++     ++                       +   ++    L   +   
Sbjct: 272  GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 959  LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 1004
            +  ++ +    L         + SV ++  ++   +  +  T   D    I
Sbjct: 332  VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 4e-06
 Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)

Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
           P  +D         L         L++            +  D+     L  T+      
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63

Query: 397 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 442
             V  V +S DG  L    +K            +      S A +  E        +   
Sbjct: 64  -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502
            +  + FS   K +   T  +D+ I++WD          +GH   +Y        +   +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178

Query: 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
            S S D  ++ W   +    +         T      +G+ + +    +    +  E   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
               +    +      +SV  V F      +++   D  +K+W++      +        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 623 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 657
                          +   +N   +   + +  +   +    N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 4e-04
 Identities = 45/295 (15%), Positives = 100/295 (33%), Gaps = 21/295 (7%)

Query: 782  LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 841
            LY P    +  V      +    V C   S +  YL +       +Y V     +  +  
Sbjct: 42   LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101

Query: 842  PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
             S                      S+ F+P D   +A G +D  I I++  + +++  L+
Sbjct: 102  DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160

Query: 884  GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943
            GH + +  L +  + + LVS  GD  + +WD+         S++     + ++P +    
Sbjct: 161  GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220

Query: 944  FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003
                  R + V ++    +  E L    +        +    F+ D + V +  +D ++ 
Sbjct: 221  AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 1004 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF-AVGLTNGEVYV 1057
            +    N   +    +        + +      ++    +  ++   G  +  V  
Sbjct: 280  LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 31/221 (14%), Positives = 58/221 (26%), Gaps = 7/221 (3%)

Query: 841  PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 896
             P P    L  +            +   ++YN      I     K   H+  V  + FS+
Sbjct: 14   KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
                L + G +    V+ V    +    S  +         + +         R +    
Sbjct: 73   DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 957  THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
                +    E   ++ W   +   +               F  G   +  + +  V+   
Sbjct: 132  DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 1017 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1057
            L T      T  +      +A  P      A G  +  V V
Sbjct: 192  LRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (166), Expect = 1e-12
 Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 5/184 (2%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 904
            +  A+N  D   IAI  ++  + IY    +    + +L+ H+ +VTG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 905  GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964
            G D   +VW + G   +    +   +          + +     +       +     + 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127

Query: 965  EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
             +    K         +    +  +  ++     D    I  A   EV+ R   T +   
Sbjct: 128  NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187

Query: 1025 TTSC 1028
                
Sbjct: 188  MPFG 191

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (158), Expect = 9e-12
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            ++   W+ D + + +  + H V +Y   G     Q  E+  H G V  + ++    +I 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            +TCG D+   VW     +   +         + C     N       S    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 518 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 562
                               S +                 R+FS    +  E        
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
           S+                V  V F     ++     D  + + D +K   + T+ +    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244

Query: 623 PENPRICFNKNGTLLAV 639
                + F    +L+A 
Sbjct: 245 -PLLAVTFITESSLVAA 260

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)

Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 391
                           VG+      +         ++           + +      + L
Sbjct: 96  RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155

Query: 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451
           +          ++S     +     +                  E  +  G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211

Query: 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
              ++       D T+ + DA       +      P+ ++    + ++    +   D   
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266

Query: 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571
             + YDS   ++ +        + +      R       K+  S        EG+     
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318

Query: 572 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 611
               L  NSVS +           Q    G D  + IWD+  ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)

Query: 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
                   + + +       L+   +    L+           +            +D  
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 916
                +A +   +     H   V+ +          +   ++G D  + +WDV 
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 478
           GS A        H  +V+ ++  +  K       T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (159), Expect = 6e-12
 Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)

Query: 568 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
           + T +G    H +  ++ + F+   + ++   DD +I+++D    + L  +    G    
Sbjct: 5   RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 626 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684
             + +   G L++       R+  ++      V      +     +           G  
Sbjct: 59  --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116

Query: 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744
           + ++ V + PKE   P+         E + PL     E     +          R    +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

Query: 745 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 797
           G   +     N + +      +    LS              R        DTT      
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 798 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
                    Q       L +       ++    S+                   +++   
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 853 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
              +N++  G ++    IYN RS +++ + +   + ++  + F     ++ +   D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348

Query: 912 VWDVD 916
           +  +D
Sbjct: 349 LEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 3e-09
 Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 498
           H  N++ +        I  +  G +    +++  +G   ++        ++S+    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 499 IHFIFSISVDGKIKAWLYD 517
              + ++  DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 9/149 (6%)

Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
           T L F   ++N +  G DD  I +Y++ + + + +L GH   V  L ++    ILVS   
Sbjct: 17  TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
           D  + VWD+                          +++   +       +  L +++  +
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCL-----DIVEYKNIKYIVTGSRDNTLHVWKLPK 127

Query: 967 LTCLKQWFPISSVPISQATFSCDCRMVFT 995
            + +         P+   T   +   V  
Sbjct: 128 ESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
           VIT  DDK I+V+D++         GH   V++L      +   + S S D  ++ W   
Sbjct: 26  VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
                  ++        +         +    S++    +  W   + +    +     +
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137

Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608
           H+   V H        +     H+  +  ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
             L        ++ +      L+   T+                             + +
Sbjct: 47  LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105

Query: 388 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445
           K       G   N + VW  P  S +     +H   L  +    +      +  H+ +V 
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505
                       V++   D T+ VWD       Y   GH   +Y              S 
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219

Query: 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
           S+D  I+ W           +   +   +   +  G    S        +          
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271

Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
              R +       ++++  +     D IL +G ++   I+++   +L+            
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328

Query: 626 PRICFNKNGTLLAVIANENRIKI 648
             + F    TL+A +  + +  +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 462
               + + +       ++++Y        +  L++  H G V  L ++       +++  
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYAHGGI---LVSGS 71

Query: 463 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            D+T++VWD   G  T+ FEGH + V  L     +NI +I + S D  +  W
Sbjct: 72  TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)

Query: 560 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
           W   E    +  +G    H+   ++ + F    ++I++  DD+ +K+W     + L T+ 
Sbjct: 1   WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677
                             ++   + +  +K+        +      +  +R + ++    
Sbjct: 55  G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110

Query: 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737
           V+G+  A   V   E  +        V A    + +       +    +           
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159

Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
            ++        +  L  +   +          +S    T +  R++    G         
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216

Query: 798 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856
            S          +   D  L S  +   + ++ + T + + T+  P+   +++     + 
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 857 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 907
           N +    DD T+ +++ ++ E I  L      G    V  +  S+   +      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 908 AQIFVWDVD 916
            ++ V D D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
            + +    +  H  +V        C    +++  DD T+KVW AVTG    +  GH   V
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 489 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543
           +S         +      +   + +            + V                   R
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 544 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 583
           ++   T +                     V     +  +K            LQ ++  V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643
                    +++   D  I++WD+     + T+       ++          +L     +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236

Query: 644 NRIKI 648
           + +KI
Sbjct: 237 STVKI 241

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 3e-09
 Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)

Query: 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407
             ++ G++     +W   +G+   +R       G  S   +  ++          VW+ +
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85

Query: 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 457
                     H   +   H           DA +   +          +           
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145

Query: 458 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513
               V++   D  +KVWD  T +  ++ +GH   VYSL          + S S+D  I+ 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201

Query: 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573
           W  ++      +   G              L S       +S +  W+   G   +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255

Query: 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 630
                ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI  
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 631 NKNGTLLAV 639
           +    + AV
Sbjct: 314 SNTKLVCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
           V++   D +I+VWD  TG+  ++  GH +    +        + + S + D  +K W   
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +         P    + +      +       S +G   L  W+   G   R    L+  
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302

Query: 578 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 609
                V  +     K        +      + + D + 
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 6e-04
 Identities = 29/204 (14%), Positives = 60/204 (29%), Gaps = 27/204 (13%)

Query: 854  HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913
               N I  G DD+T+ +++A + + +  L GH+  V      D  NI++S   D  + VW
Sbjct: 25   FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82

Query: 914  DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 973
            + +           T          +  +   +D T  +   E              +  
Sbjct: 83   NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130

Query: 974  FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033
              +     +      D R V +   D  + + +                      L  + 
Sbjct: 131  HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT-------------LQGHT 177

Query: 1034 HAIAAHPLKPTQFAVGLTNGEVYV 1057
            + + +          G  +  + V
Sbjct: 178  NRVYSLQFDGIHVVSGSLDTSIRV 201

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.9 bits (146), Expect = 3e-10
 Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)

Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 643
                + ++     + + + D+    +  +          P       +     V+ N  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61

Query: 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 699
             I  ++     +   A + S             ++  G              D      
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759
           P + V +       KP+   P   Q  L+ +                       +     
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166

Query: 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819
                    T++             P     +         S                 +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226

Query: 820 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878
                     + T KT        +    +   +P D N I      + +  Y+ +  ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 938
           I            + F    + L   G    + V++ D    +  ++++ P G M+    
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341

Query: 939 E 939
           +
Sbjct: 342 Q 342

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)

Query: 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 383
                 ++     P +    P   T  ++  + GD    D+++ +  F  N         
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86

Query: 384 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 432
                       G S+     SPDG  +    +        Y                  
Sbjct: 87  -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135

Query: 433 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
           + +        V  +  +              +     K          +R         
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195

Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
             +       E              +      L           G T     A+   L+ 
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255

Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 602
            G     +   +    +  A     Q   ++     ++   V FD   D++   G  + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 603 KIWDMNKVQLLTTIDAGGG 621
            +++ + ++ +  I   GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 381
           +   +        P         +   +  +    +  K   ++             D+ 
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
                 +     D        + SP      +    + +  Y         + ++     
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291

Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
                +AF     +  +   G    + V++  T  +  + +  G  +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
            A  A  + +  I       + V D  + +   S          +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 506 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 557
           +  G I                       G      A S +G+ ++     T +  + ++
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 558 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           V+    E          +          V+   A D          I   D+   +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 616 IDAGGG 621
           +     
Sbjct: 179 LPLRNW 184

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 370
               E S     + +       ++ G       +WD N+ +                   
Sbjct: 9   HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
              I       +    +     L          +    +  ++        + ++     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
           +D   +  +  H   VN + F          +   D+TIKVW+  T     +  GH   +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
             L          + S S D  I+ W  D           G          + +R+ S  
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG- 234

Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 602
                +  +  W+       R   G             V  + FD  + QI+++  D  I
Sbjct: 235 ---AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289

Query: 603 KIWD 606
            IWD
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 4e-08
 Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 499
               V  L +        +++   D TIK+WD  T        GH   V  L    +  I
Sbjct: 14  TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559
                 +V                  +A               +  S             
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119

Query: 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
           W+ +            L  +  +V   D     I++A  D  IK+W+ +  + + T++  
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176

Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKI 648
               +    C      L+   +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864
               L   D  + S S    I L+ +     +  +               DN  I  G  
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236

Query: 865 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           D  I +++  ++           +  L  HS RV  L F +    +VSS  D  I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 27/211 (12%), Positives = 62/211 (29%), Gaps = 27/211 (12%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
              L +   D+  I  G+ D+TI I++  + E    L GH+  V  L + + + I      
Sbjct: 19   YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
                     D        +       +             +        +  +A+++   
Sbjct: 70   -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 967  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026
             T +     +     +      D + + ++  D T+ +   S  E               
Sbjct: 125  PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR------------ 172

Query: 1027 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1057
              L+ +   IA    +      G ++  + +
Sbjct: 173  -TLNGHKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 2e-09
 Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)

Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
           +    + + P  + +                 G+  F+R     D G   +         
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 395 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 447
               V  V +SP      L        V ++ +    ++         E     G ++D+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
           ++    +++ V+  G D         +G+      GH   + +        +  +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
              +         +  D      G        +         +   +  +  ++   G  
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240

Query: 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
            +  +  Q                +    G D  I++WD+   + +           N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 628 ICFNKNGT-LLAVIANENRIKI 648
           +     G   +  ++ +  +  
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
             T G D TI+VWD  T    + ++ +        +   A  N   I S+S+DG +  +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 10/168 (5%)

Query: 835 TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 886
           ++  I+PP P       T L+++P  N +       + +   +   S+V  + +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 887 KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 944
             VT + FS       L S     ++ VW            +        LA   + I +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 945 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 992
             +  R  +V E                   +S               
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR 171

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 5e-06
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 908
           +  D+   A    D+TI +++  +S+ + K     +++      V +     ++S   D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 909 QIFVWDV 915
            +  +++
Sbjct: 319 TLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 7e-09
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +  + + P G       +  +          +   + ++  H   V  L F+   K   
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            ++ G D  +  W    G+  +      + V S      +   +I + S D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 9e-09
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
           SL F             D+ +  +       I +    S  V     S     +V+  GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327

Query: 908 AQIFVWDV 915
            +  V++V
Sbjct: 328 KKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)

Query: 376 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
           KVWDI         + +        +      PDG  L V      + ++     +   +
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
                +                 S  + G+     + +     +T   +  G    + C 
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
               +   +++  +D  +++W          +D        + Y   G  L     S   
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248

Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
           E   V               L L  + V  + F       ++ G D+++  W       +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
                   +        + +   +   + + +  +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
           + ++  G         +++  +    G      +       +V     S   K I  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324

Query: 462 GDDKTIKVWD 471
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-05
 Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
           F+ A+   P  S +    + DG +  V +    +      G     +Q+    H   V  
Sbjct: 3   FQGAMGSKPAYSFH---VTADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCA 56

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 492
           +  S P + +     G    +KVWD                     + S  
Sbjct: 57  VTISNPTRHVY---TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
            D+ I     R +  I+ L  H + V  +  S+    + + GG   + VWD+   G ++ 
Sbjct: 30  PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87

Query: 924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 983
            S                 +   D    ++  E              +    ++S   + 
Sbjct: 88  VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144

Query: 984 ATFSCDCRM 992
              +     
Sbjct: 145 YALAISPDS 153

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591
              + ++  G+   S G        L  W    GA     +      +SV          
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319

Query: 592 QILAAGDDHVIKIWD 606
            I+    D    +++
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 806 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864
                +    +  S     +++ +      +I      S    S   +  D+  I  G  
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS-VLSCDISV-DDKYIVTGSG 326

Query: 865 DSTILIYN 872
           D    +Y 
Sbjct: 327 DKKATVYE 334

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 898
           +   P          + +++A G  D+ I IY+ +   ++I  L  H   V  L++    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 899 NILVSSGGDAQIFVWDV 915
           + LVSSG DA I  W+V
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
           I  H   +  L  +       +I+   D  I  W + +       + H   + SL     
Sbjct: 9   ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 497 ENIHFIFS 504
           +    I  
Sbjct: 58  QEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 459 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            T   D  I ++      +       H   V +L          + S   D  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473
           ++AH   VN+L +  P     +++ G D  IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916
           EV+  + GH+K +T L  +     L+S   D +I  W   
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 34/248 (13%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
            T+L  NP     +  G  D  I+ +++ S       + HS  +  L  S A      S  
Sbjct: 17   TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA------ 960
            D                +     +   T   +              ++    L       
Sbjct: 67   DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 961  ------------------IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 1002
                              +++  +L              S  + S     +    V G +
Sbjct: 127  SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 1003 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1062
             +++  + EV+    +    +                 ++    A G  +  +++     
Sbjct: 187  LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 1063 PGDTWAVL 1070
            P      L
Sbjct: 247  PMKIIKAL 254

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 36/329 (10%), Positives = 83/329 (25%), Gaps = 22/329 (6%)

Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 648
           +D ILA      + + D  K+ +   I      P          G +     N+   +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708
           ++                   L    +ST      +    +++ D K     E  V  E 
Sbjct: 61  IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107

Query: 709 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767
                +    A           +     +I+ L +   G  ++     G  L    P   
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY---GLGRDLHVMDPEAG 164

Query: 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 827
             +  +         Y             +               + A   +   G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224

Query: 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887
            +      +  +        S A NP            + +  ++   +  I ++     
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280

Query: 888 RVTGLVFSDALNILVSSGGDAQIFVWDVD 916
               +  S   + +   G    +  +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)

Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 433
            V D    ++  K   + D G +    + +P G +       S+ +V++    G +  R 
Sbjct: 14  VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 434 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492
            L             A S   K +++        +  ++              +   +  
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 493 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545
              +        +   ++ +  D  +      +L       +                  
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 546 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 592
                     +    +           GL             +++   V          +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 651
             A G  +V++ +D+ K   +  +            +  + +G+ + +      +   + 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)

Query: 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 388
           T+ +   +PM     P                  D+ +G+ L   +              
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77

Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 440
                +   S+     SPDG  L +  S   ++L  +           ++   + +    
Sbjct: 78  ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133

Query: 441 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
              +  LA++          + + V+       ++     +       +     V++   
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
            +       ++   D           G     D                  FS   +   
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 554 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
                  + L  ++  + A  +         +S   V+  T    +   G    +  +D 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

Query: 608 NKVQLLTTIDAGGG 621
             ++    +D  G 
Sbjct: 309 ETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)

Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
           ++       + V D    +  +  +    G                  +++    +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62

Query: 516 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
             +       D              A S +G+ L    +    E    E   +  A+   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 571 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
               +         ++++ +     ++   G D  +   +   + 
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390
               S        P    +     + G        + + +   +   +  G  +M  +T 
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229

Query: 391 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
              +     + V     + + +      + ++++ +           ++      +   +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
             S     +     G    +  +DA T  +    +  G    SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.8 bits (127), Expect = 4e-08
 Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)

Query: 313 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 371
            F +T+ F   P+T          + + +   P    +     N        V S     
Sbjct: 2   EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52

Query: 372 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431
           I                     +          SP G           V+++     +  
Sbjct: 53  I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
            +   I    G V D        +         +            +       A   + 
Sbjct: 94  LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
                     I S S D  +  +       +  +         + Y+ +G    S G   
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211

Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
               +        G  +           SV  + +     +I +A  D  IKIW++  ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271

Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
           +  TI  G  + E+ ++        L  I+    I  
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 9e-07
 Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 7/119 (5%)

Query: 838 TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
            + P  P     TA  L   P   + I      S +      S         HS + T  
Sbjct: 7   ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951
             S +     S      + +WD          ++    G +     ++  +        
Sbjct: 65  KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 908
              D   IA    D TI I+N  + +V   +   ++   +  G++++     LVS   + 
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303

Query: 909 QIFVWDVD 916
            I   + +
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 514
           + +   DKTIK+W+  T     +             +          + SIS +G I   
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.7 bits (124), Expect = 9e-08
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 498
           H   +  L+ SA  K +   +   +  I  WD  TG     F + H   +  +   +K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 499 IHFIFS 504
           +  +  
Sbjct: 69  LFTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 905
           T+L+ +  D   +     +  I  ++  +        + H+  +TG+  +     L +  
Sbjct: 16  TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73

Query: 906 GDAQIFVWDVDGWGIQTC 923
            D  + V    G G+ + 
Sbjct: 74  WDDHLKVVPAGGSGVDSS 91

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 21/69 (30%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936
            +     GH+K +T L  S     L S+  +  I  WD+                +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 937 PSETHIQFH 945
            +     F 
Sbjct: 63  TTSKGDLFT 71

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 851 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 908
               DN  +A G  D++++++N    S   I     H+      V       +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290

Query: 909 QIFVWDV 915
            I  W+V
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 40/298 (13%), Positives = 80/298 (26%), Gaps = 20/298 (6%)

Query: 325 TVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL------------- 370
           ++ Q    G +    ++         L      G    WD+++G                
Sbjct: 3   SIDQVR-YGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
                   ++ +     L           S   V        LG+A S       A    
Sbjct: 61  IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
             A         V    + +  A       +  G   +      ++G+     +    P 
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
                    N  F+ +     K+  +   +       ++      ++A  +         
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
           T     S +V WN ++ +            +SV+ V +      I++AG D  IK W+
Sbjct: 241 TGSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 486
            AH  ++  ++          ++C  D  +KVWD          +            H  
Sbjct: 11  KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
            V          +  + + S  G +  +    
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 43/393 (10%), Positives = 104/393 (26%), Gaps = 40/393 (10%)

Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 629
             +  V         ++   D  +K+WD   +      D       +             
Sbjct: 15  ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 630 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 682
                   L+A  +    +        +           +L  +++K S   +       
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742
                  V  D K            ++S      ++   E Q  +      +   + +  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDSN 800
           +  G       +  V +        L       + +     +   +  PQ  +      +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
           +         ++    + S S          + +  L     S    SL+FN      + 
Sbjct: 253 NSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETLC 305

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 916
               D  +  ++ ++ E I+ L  H   +      L   +  + L   G      V+DV 
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359

Query: 917 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 947
               G ++       + +  +    + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-06
 Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)

Query: 361 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420
           +WD         ++               + +    V       + +  L+        +
Sbjct: 38  VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91

Query: 421 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 470
             Y      + +         L+ D    +   L + A   ++    ++      T  +W
Sbjct: 92  LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151

Query: 471 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 515
                   + S   + +P   L    +  +                I +   +G ++   
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211

Query: 516 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
             +L    +++            R    +    L +          +  +    G    +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 571 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 618
                             + V  + F+ + + + +AG D  ++ WD+   + +TT++   
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331

Query: 619 GGGLPENPRICFNKNGTLLA 638
                E   +  +++G  LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 9e-05
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)

Query: 305 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364
               E        S +   +   ++ +  S    S+D       L+  G N G   + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212

Query: 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424
           ++ + L+    +   I   + +          +       +  G +              
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272

Query: 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484
                 ++  L   AH   V  L+F+   + +   + G D  ++ WD  T  R  +   H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 485 GAPVYSLC 492
              +    
Sbjct: 331 CDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 48/456 (10%), Positives = 109/456 (23%), Gaps = 89/456 (19%)

Query: 480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA 539
           + + H A ++S+         F  S S DG +K W                         
Sbjct: 9   AGKAHDADIFSVSACNS----FTVSCSGDGYLKVW------------------------- 39

Query: 540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 598
                       + +    E  + +      ++      + +  +  D  +  ++A    
Sbjct: 40  ------------DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87

Query: 599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI-------------CFNKNGTLLAVIANENR 645
              +  + + +      +        +  +                     L     +  
Sbjct: 88  SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGT 147

Query: 646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 705
             I +         +  L+ +        + +         SV ++E         I+  
Sbjct: 148 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL------IATG 201

Query: 706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 765
             N +     L             S +  +   R    +   ++ A+A +          
Sbjct: 202 FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 261

Query: 766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVI 825
                    +  VP    Q   G     +     +  ++      +  D        G +
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD--------GKL 313

Query: 826 SLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 881
             + V T + I T+             LA + H +++   G+ D   L            
Sbjct: 314 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL------------ 361

Query: 882 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
                K     + +D    L     D  I  +   G
Sbjct: 362 ----KKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654
                    + D    +++  ID G      P      +G+ +A  A+    +I     +
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77

Query: 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714
           + V+    ++         P +     G      S+  D K  +  + S  A     V+ 
Sbjct: 78  DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136

Query: 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
              A                   +   +   G                            
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 775 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
                             +   T +     +     S +  +L +      +        
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248

Query: 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
                +        +       +          +++ +A++ E ++K E     +  +  
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307

Query: 895 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 932
           S  +   +   S GD  +++ D      ++   L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)

Query: 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409
           L+  T  G     D++SG   F+   +       +                +V +     
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261

Query: 410 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
            + +   +     +               ++L        ++ +  S   K +       
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

Query: 464 DKTIKVWDAVTGSRTYSFEGHG 485
           DKT+ + DA +G    S    G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.5 bits (93), Expect = 8e-04
 Identities = 32/323 (9%), Positives = 72/323 (22%), Gaps = 48/323 (14%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTG---------LWDVNSGQKLFIRNFKVWDIG 381
           I+G   P +         +    T               ++D  +               
Sbjct: 44  IDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102

Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
                     +   G ++    +SP  ++  V       +                    
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------PT 156

Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
                            +  G + T ++           F  +                 
Sbjct: 157 APDTFFMHCRDGSLA-KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGR 208

Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLG------------CTRMAYSANGRRLF---- 545
           +   +  GKI      S  A+       L               ++AY     R++    
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF--DTAKDQILAAGDDHV 601
                  K    F+V  +   G     ++      + +  ++   D        +  D  
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKT 324

Query: 602 IKIWDMNKVQLLTTIDAGGGLPE 624
           + I D    + L +++  G  P+
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQ 347

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)

Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
            +   P +  LL           WD          +  V+     +              
Sbjct: 16  DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58

Query: 399 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +    +  +    + V   +  +      G    +     +A++G      +       +
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
                 +               +   +   V +       N   +     + +++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 518 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 562
                             R     P         S +GR  +       +  +    +  
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
               +      L    NS+    F      +  AG D +I  W++   + +         
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293

Query: 623 PENPRICFNKNGTLLAVIANENRIKI 648
            E+  +    +  +L +  +++  K 
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            ++ +   P  SLL +      + +Y +   +     L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            +     + +KV    + S                    ++     S     ++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 576
             G     +                   S        S +  +                L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 627
           ++    V      ++    +  D  + +   +                +           
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 628 ----ICFNKNGTLLAVIANENRIKI 648
               I F+     L    ++  I  
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)

Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 446
            +  +   +      +     V +  +    D             R  L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
           + FS   K +   T G D  I  W+  T  +  +F   +   V  +          +   
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 506 SVDGKIKAW 514
           + D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 897
            P    + +   P   +++ I   D ++ +Y          L     +   +    F D 
Sbjct: 9   APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 898 LNILVSSGGDAQIFVW 913
            ++ +  G      + 
Sbjct: 68  TDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 934
           +++   +     ++ +    + ++L+ +  D  + V+  D     +   +SL+    ++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 935 LA 936
             
Sbjct: 62  CN 63

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)

Query: 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 357
            D+SP        F S G+    D   T    + E       +          + GT  G
Sbjct: 8   EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65

Query: 358 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 394
           D  G++D  +G+                           +              T + R 
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 450
               +     S +   +   +     +   Y   +    D   +    A   N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185

Query: 451 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 503
                 ++            D V  +       + +                +       
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 504 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
              ++    ++   +          P      +          +       +  L++++ 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
               +           N+++ +     +  ++   DD  I  + + K +   T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)

Query: 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 389
           ++  F  V    ++            V          + + D+   S             
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
             +    +  +  V     +    A  K ++  Y            ++     N+ DL  
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322

Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
           SA  K +  +   DD  I  +         + E    P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)

Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395
           S  + DF P+   L+   +  G   + DV+    L +                       
Sbjct: 4   SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41

Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 450
            + +  V    D  +  +  ++    L  Y   +   +  + + ++GNV  +        
Sbjct: 42  PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99

Query: 451 ---------------------------------------------APCKQISVITCGDDK 465
                                                            +         +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
            I V+D        +   +    +   P    +   ++ +S      +     L    + 
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 526 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
            +                         +                 +    R    L+   
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
              SV            A +  V+  +D+   ++    +    L        + +   + 
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330

Query: 639 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 670
           V  ++ +I    LE PE         +  + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 851 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
            +           +   +L Y+ ++     K+      +T L  S     ++    D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338

Query: 911 FVWDVDG 917
           + + ++ 
Sbjct: 339 YTFPLEK 345

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)

Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 452
           G +V+    S  G  L V      V +       +     EI                  
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 502
            K   +          + D  T          G        H +  +           FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 503 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
            ++   GKI    Y  L   +    +            + R   +   ++     +    
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238

Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
               AI+ T           + VH         +   D  + +   +    
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 0.003
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)

Query: 841 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
            P    T    +    N+ ++   D   I + +  + E+ + L+     V     S +  
Sbjct: 16  APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74

Query: 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 957
            L   G D ++ + D+      T   ++      ++  S        +    +       
Sbjct: 75  YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131

Query: 958 HLAIYEAEELTCLKQWFPISSVPISQAT 985
              I + E L   K           Q  
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)

Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
                  +        LL             V           ++    +C  +      
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171

Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
             PG +    + S   SL     +                Q     A   N   +   A 
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 453 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 506
              I                    +G +  +F   G  + +   +               
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 507 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
           +           S+G      + G     +  + +G                        
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329

Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
                                         +    V+ I+D    Q  ++++   G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)

Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 438
             L    G  ++  V    GS   +A               V+++            +I+
Sbjct: 57  VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113

Query: 439 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
                       V+ +   A    + +                 S     +         
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 538
            P A       +  S    + A    +  A                  A       M   
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227

Query: 539 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 593
           A    +        G +     + +E           G Q+     +   +   T +   
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287

Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 650
                         +  Q    I  G         I   ++G       +     + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 651 T 651
            
Sbjct: 344 A 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)

Query: 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 391
             +++ +                     G+        +   +         +M      
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251

Query: 392 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 437
                 + N        V    +   + +   +H                     Q    
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309

Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487
            ++  + + +  +      +       + + ++DA +     S E    P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 653
              D   I + D +  +++  ID G           + +G  L VI  + RI  I    +
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 654 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 708
             +  A   +    R +  +                    ++ +    + K  +S     
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 709 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763
                     R      S      + +  +  K+  + Y +              L    
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213

Query: 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 813
             +       A               +                         P ++ S  
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

Query: 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 867
                S  G     +    +K +  +      +  +  +P  +++              +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333

Query: 868 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 913
           + +++ ++ +   +         L   +KRV    ++     +  S          + V 
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393

Query: 914 DVDG---WGIQTCRSLQTPDG 931
           D        +     L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 21/212 (9%), Positives = 54/212 (25%), Gaps = 9/212 (4%)

Query: 841  PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
             P         +    N+ ++   D   I + +  S +++  ++     V     S +  
Sbjct: 16   KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74

Query: 900  ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-- 957
             L+  G DA+I + D+          ++      ++    +      +    +       
Sbjct: 75   YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGAYWPP 131

Query: 958  HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH--EASNLEVQCR 1015
              AI + E L   +          +Q            +  +    I   + +   +   
Sbjct: 132  QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 191

Query: 1016 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1047
                  L  T+     +               
Sbjct: 192  YKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT 223

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474
                    +       +    I     +   +A +   K++  +      T+ V D  T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275

Query: 475 GSRTYSFEGHGAP 487
            + T +      P
Sbjct: 276 NTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 652
           A  +   I + D+   ++  TI  G     NP     + +GT + V     N + I++T 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61

Query: 653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712
                 A   +   +   S      V+  G      ++       +    +  A      
Sbjct: 62  ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115

Query: 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772
           + PL    S     L  +      +S +                   +      D T   
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173

Query: 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 832
            A                 +     ++           +K            +S+    T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233

Query: 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
            K    I P  P    +A  P    V       +T+ + +  ++ + + + 
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)

Query: 454 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
           KQ   I   + + I VW+                  V  +     +  +    +  + ++
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61

Query: 512 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568
            A+               A     T ++    G+ +F    +    S     +     + 
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
              +GL   H++       T     L      +  + D   +      +        PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1092
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.57
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.23
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.19
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.96
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.91
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.88
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.77
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.62
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.3
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.21
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.91
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.86
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.85
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.79
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.74
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.72
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.71
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.71
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.7
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.68
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.63
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.61
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.6
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.59
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.55
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.46
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.41
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.16
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.15
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.92
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.92
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.09
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.65
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.86
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.55
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.06
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.48
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.14
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.0
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.37
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.76
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.97
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	84.91

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=332.78  Aligned_cols=293  Identities=13%  Similarity=0.172  Sum_probs=251.7

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ..+++| +|++.|+|++|||+|+ +||+|+ ||.|+|||+.++.....              +......+|...|.+++|
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~  105 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL  105 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence            344555 8999999999999998 689987 79999999988754432              111225679999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|||++|++|+.|+.|++||+..... .....+..|...|.+++|+|++.  ++++++.|+.|++||+.+++......+|
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            99999999999999999999986543 22336778999999999999999  8999999999999999999999999999


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ...|.+++|++  ++..+++++.||.+++||+++.+....+. +...|.+++|+|+++++++++.    ++.+++||..+
T Consensus       183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~  255 (337)
T d1gxra_         183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK  255 (337)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred             ccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----ccccccccccc
Confidence            99999999954  66899999999999999999887665554 5678999999999999999876    56699999998


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ++... ...|.   ..|.+++|+|++++|++++.||.|++||..+++.+..+...   ..|.+++|+|++++|++++.||
T Consensus       256 ~~~~~-~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         256 PDKYQ-LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             SCEEE-ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTS
T ss_pred             ccccc-ccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCC
Confidence            88753 34444   88999999999999999999999999999999998887643   4589999999999999999999


Q ss_pred             eEEEEEC
Q 001358          645 RIKILET  651 (1092)
Q Consensus       645 ~i~iw~~  651 (1092)
                      .|+|||+
T Consensus       329 ~I~vWdl  335 (337)
T d1gxra_         329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-36  Score=326.23  Aligned_cols=288  Identities=21%  Similarity=0.359  Sum_probs=263.7

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      .++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~   69 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDH   69 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECT
T ss_pred             cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeec
Confidence            467999999999999999998 799999999999999999988865                   778999999999999


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      ++.++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          70 SGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHRE  144 (317)
T ss_dssp             TSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             cccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCC
Confidence            99999999999999999998865443   5678999999999999999  799999999999999999999999999999


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCC--------------------CEEEE
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--------------------RRLFS  546 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg--------------------~~l~~  546 (1092)
                      .+.++++++  ++.+|++++.||.|++|++........+..+...+.++.++|++                    ..+++
T Consensus       145 ~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         145 WVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             cceeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            999999854  67899999999999999999999999999999999999998764                    35666


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCc
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1092)
                      ++.    ++.|++||..+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.
T Consensus       223 ~~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~  293 (317)
T d1vyhc1         223 GSR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVT  293 (317)
T ss_dssp             EET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEE
T ss_pred             ccC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEE
Confidence            664    6779999999999999999988   899999999999999999999999999999999999998764  4699


Q ss_pred             eEEEccCCCEEEEEeCCCeEEEEE
Q 001358          627 RICFNKNGTLLAVIANENRIKILE  650 (1092)
Q Consensus       627 ~v~~s~~~~~l~~~~~dg~i~iw~  650 (1092)
                      +++|+|++++|++++.||+|+|||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-35  Score=318.67  Aligned_cols=291  Identities=16%  Similarity=0.200  Sum_probs=247.8

Q ss_pred             cCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+++.+.+++++|+|+. ||.++ ++.|.+||+.++.....                   +.+|...|++++|+|||++|
T Consensus        15 ~~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l   73 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC   73 (311)
T ss_dssp             CCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeE
Confidence            34456788999999995 66654 56799999999877654                   77899999999999999999


Q ss_pred             EEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC--CCcEEEEECCCCceeEEEecCCcceE
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      |+|+.||+|+|||+.++..... ..+.+|.++|.+++|+|+++  ++++++.  +..++||++++++....+.+|...|+
T Consensus        74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN  150 (311)
T ss_dssp             EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred             eccccCceEeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998765432 35788999999999999999  6777764  56799999999999999999999999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      +++|+++.+ ..+++|+.||.|++||+++.+.......+...|.+++++|+++++++++.    ++.|++||..++..+.
T Consensus       151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred             cccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccc
Confidence            999976432 35889999999999999999888899999999999999999999999886    5669999999998887


Q ss_pred             EEeecc----ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe
Q 001358          570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1092)
Q Consensus       570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~  645 (1092)
                      .+....    .|...|.+++|+|++++|++|+.||+|+|||+++++++.++..+... ....+.+.+++..+++++.||.
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF  304 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred             cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence            765432    13478999999999999999999999999999999999998766432 2344556667778999999999


Q ss_pred             EEEEECC
Q 001358          646 IKILETP  652 (1092)
Q Consensus       646 i~iw~~~  652 (1092)
                      |++||.+
T Consensus       305 i~~wd~d  311 (311)
T d1nr0a1         305 INFVNPE  311 (311)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999964

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-34  Score=313.85  Aligned_cols=315  Identities=20%  Similarity=0.302  Sum_probs=264.5

Q ss_pred             EEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEe
Q 001358          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       469 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      .|.. .....++++||.++|++++|++  ++.+|++|+.||+|++||+.+++....+..|...|.+++++|++.+++++.
T Consensus         2 ~w~p-~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           2 EWIP-RPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CCCC-CSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCC-CCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            3543 3344578999999999999965  668999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    +..+..|+....+....+.++.   ..+.++.++|+++.+++++.|+.+++||+.+++.+..+..+.  ..+.++
T Consensus        79 ~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~  149 (317)
T d1vyhc1          79 A----DMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMV  149 (317)
T ss_dssp             T----TSCCCEEETTSSCEEECCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred             c----cccccccccccccccccccccc---ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceee
Confidence            6    5558899999888888888777   889999999999999999999999999999999999888664  458899


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeecccc
Q 001358          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1092)
                      +|+|+++++++++.|+.+++|+..++.....+.++...+.++.+                                    
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~------------------------------------  193 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW------------------------------------  193 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE------------------------------------
T ss_pred             ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEE------------------------------------
Confidence            99999999999999999999999988777666655544444444                                    


Q ss_pred             ccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCC
Q 001358          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1092)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1092)
                                                        +|++......                                    
T Consensus       194 ----------------------------------~~~~~~~~~~------------------------------------  203 (317)
T d1vyhc1         194 ----------------------------------APESSYSSIS------------------------------------  203 (317)
T ss_dssp             ----------------------------------CCSCGGGGGG------------------------------------
T ss_pred             ----------------------------------eeccccceee------------------------------------
Confidence                                              4433211000                                    


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCe
Q 001358          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST  867 (1092)
Q Consensus       789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~  867 (1092)
                                  ............++.++++++ |+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.
T Consensus       204 ------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~  270 (317)
T d1vyhc1         204 ------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT  270 (317)
T ss_dssp             ------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTE
T ss_pred             ------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence                        001111223344667777777 79999999999999999999999999999999 8999999999999


Q ss_pred             EEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001358          868 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1092)
Q Consensus       868 v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd  914 (1092)
                      |++||+.+++++..+.+|.++|++++|+|++++|+|++.||+|+|||
T Consensus       271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-34  Score=313.82  Aligned_cols=283  Identities=13%  Similarity=0.192  Sum_probs=242.6

Q ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccc--eEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       394 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~--~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      +|...|.+++|||+|++||+|+ ||.|+|||+.++.....  .....+|.+.|.+++|+||++  +|++|+.|+.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence            6999999999999999999987 78999999987654432  223457999999999999999  899999999999999


Q ss_pred             CCC--CceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEec
Q 001358          472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1092)
Q Consensus       472 ~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1092)
                      +..  ++....+.+|...+..++++  +++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            874  45667888999999999985  46789999999999999999999888888889999999999999999999876


Q ss_pred             CCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE
Q 001358          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1092)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1092)
                          ++.+++||+++++.+..+. +.   ..|.+++|+|+++++++++.|+.+++||+.+++.....   .+...|.+++
T Consensus       204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~  272 (337)
T d1gxra_         204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLK  272 (337)
T ss_dssp             ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred             ----cccccccccccceeecccc-cc---cceEEEEEcccccccceecccccccccccccccccccc---ccccccceEE
Confidence                6679999999999887765 33   78999999999999999999999999999988876443   2345689999


Q ss_pred             EccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccc
Q 001358          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1092)
Q Consensus       630 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1092)
                      |+|++++|++++.||.|++||..+++.+....                                                
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------------------------------  304 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------  304 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc------------------------------------------------
Confidence            99999999999999999999998775543321                                                


Q ss_pred             cceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                                             |...|.+++|+|++++|++++.||.|++|++
T Consensus       305 -----------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 -----------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -----------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -----------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                   4556778888888888888888888888875

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-34  Score=322.08  Aligned_cols=303  Identities=15%  Similarity=0.232  Sum_probs=240.9

Q ss_pred             ccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCE
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~  410 (1092)
                      .+|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+.......... ............+|...|.+++|+|||++
T Consensus        59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeeccccccc-ccccccccccccCCCCCEEEEEECCCCCc
Confidence            37999999999999998 689987 8999999999998876532210000 00011222235578899999999999999


Q ss_pred             EEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEE
Q 001358          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1092)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  490 (1092)
                      |++|+.||.|++||...++.+.   .+.+|...|.+++|++++.  .+++++.++.+++||..+.........+...+ +
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~  209 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-T  209 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCEE-E
T ss_pred             ceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccccccc-c
Confidence            9999999999999999886554   6788999999999999999  79999999999999999998888777555544 4


Q ss_pred             EeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       491 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      +.+. ..++.+|++++.||.|++|+..+......+       ..|...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       210 ~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~  284 (388)
T d1erja_         210 VAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQ  284 (388)
T ss_dssp             EEEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred             cccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEecc
Confidence            4444 346789999999999999999987765543       345678999999999999999986    6679999998


Q ss_pred             CCeEE------------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEE--
Q 001358          564 EGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--  629 (1092)
Q Consensus       564 ~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~--  629 (1092)
                      ++...            .....|.   ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|..  .|.+++  
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~~~~  359 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVAVA  359 (388)
T ss_dssp             --------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred             CCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEEe
Confidence            66543            2333344   7899999999999999999999999999999999999987643  577776  


Q ss_pred             ----EccCCCEEEEEeCCCeEEEEECC
Q 001358          630 ----FNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       630 ----~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                          |+|++++|++|+.||+|+||+++
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                46789999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-33  Score=310.38  Aligned_cols=295  Identities=19%  Similarity=0.266  Sum_probs=258.9

Q ss_pred             cceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEE
Q 001358          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1092)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~  403 (1092)
                      ....++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|...|.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~  104 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA  104 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence            356689999999999999999998 799999999999999999987765                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCEEEEEEccCCCCc-cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe
Q 001358          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1092)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~  482 (1092)
                      |+|+++++++|+.|+.+.+|+....... .....+.+|...........+.   .+.....|.....|+...........
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence            9999999999999999999998765443 2334567888877777666654   58888889999999998888888888


Q ss_pred             cCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       483 ~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      .+...+....+.+  ++.++++++.|+.|++||+++......+..|...|.+++|+|++++|++++.    ++.|++||.
T Consensus       182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~  255 (340)
T d1tbga_         182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL  255 (340)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred             ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence            8888888887744  5579999999999999999999999999999999999999999999999986    667999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      ........+.... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|++++|++|+.
T Consensus       256 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             TTTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred             ccccccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEcc
Confidence            9998877765433 34679999999999999999999999999999999999998764  46999999999999999999


Q ss_pred             CCeEEEEE
Q 001358          643 ENRIKILE  650 (1092)
Q Consensus       643 dg~i~iw~  650 (1092)
                      ||.|+|||
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=318.96  Aligned_cols=325  Identities=14%  Similarity=0.162  Sum_probs=257.8

Q ss_pred             EEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc
Q 001358          352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA  431 (1092)
Q Consensus       352 sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~  431 (1092)
                      .+..++...+|+....+....             .+..  ..+|++.|+|++|||||++||+|+ |++|+|||+.+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~-------------~l~~--~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~   96 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDV-------------ELHK--SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV   96 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEE-------------EEEE--EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred             ccCCCCcEEEeCCCCCcceee-------------eeEe--eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE
Confidence            445567788898776554432             0111  236999999999999999999986 889999999988654


Q ss_pred             cce---------------EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeeccc
Q 001358          432 RQQ---------------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK  496 (1092)
Q Consensus       432 ~~~---------------~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~  496 (1092)
                      ...               ....+|...|++++|+|+++  +|++|+.||.|++||..+++.+..+.+|...|.++++++ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-  173 (388)
T d1erja_          97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-  173 (388)
T ss_dssp             EEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred             eeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc-
Confidence            321               12235777899999999999  899999999999999999999999999999999999854 


Q ss_pred             CCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc-
Q 001358          497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-  575 (1092)
Q Consensus       497 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-  575 (1092)
                       ++..+++++.++.+++||..+.........+...+....+.+++++|++++.    ++.|++||..++.....+.... 
T Consensus       174 -~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         174 -SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC----
T ss_pred             -ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCccceeeccccc
Confidence             6679999999999999999988777766666655555555568899999876    5669999999998877664321 


Q ss_pred             ---ccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEe----------CCCCCCCCceEEEccCCCEEEEEeC
Q 001358          576 ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----------AGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       576 ---~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                         .+...|.+++|+|++++|++++.||.|++||+.++.......          ...+...|.+++|+|++++|++|+.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence               134789999999999999999999999999998755432211          1123356899999999999999999


Q ss_pred             CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceecee
Q 001358          643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1092)
Q Consensus       643 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1092)
                      ||.|++||+.+++.+..+.+|.+.|.++++.+....                +|+++++++++.||+|++|++.
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~----------------spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL----------------GPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT----------------CTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc----------------CCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999999999999999888643221                6899999999999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.5e-33  Score=305.47  Aligned_cols=294  Identities=13%  Similarity=0.149  Sum_probs=230.7

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+.++++||++.|++++|+|||+ +||+|+.||+|+|||+++++.+..                  +..+|...|.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~   63 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT   63 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence            46789999999999999999998 689999999999999999987754                  13469999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|+|+++ +++.|+.+++|+...............|...+.+++|+++++  +++++ .++.+++|+..  +.....  .
T Consensus        64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~--~~~~~~--~  135 (299)
T d1nr0a2          64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG--KLTEVP--I  135 (299)
T ss_dssp             CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred             eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc--cccccc--c
Confidence            9999765 456788999999876543332223446778899999999998  45544 46789999843  233322  3


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      ...+.+++++  +++.++++++.||.|++||+++..... ....+...|.+++|+|+++++++++.    ++.|++||..
T Consensus       136 ~~~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~  209 (299)
T d1nr0a2         136 SYNSSCVALS--NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVA  209 (299)
T ss_dssp             SSCEEEEEEC--TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGG
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence            4456777875  467899999999999999998766543 44567789999999999999999876    5569999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCC-CCCceEEEccCCCEEEEEeC
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~  642 (1092)
                      ++...........|...|.+++|+|+++++++|+.||.|++||++++..........+. ..+.++ +++++++|++++.
T Consensus       210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~  288 (299)
T d1nr0a2         210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQ  288 (299)
T ss_dssp             GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEET
T ss_pred             ccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeC
Confidence            88766554443334489999999999999999999999999999987655444333332 334444 5566789999999


Q ss_pred             CCeEEEEECC
Q 001358          643 ENRIKILETP  652 (1092)
Q Consensus       643 dg~i~iw~~~  652 (1092)
                      |+.|++||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.7e-33  Score=307.09  Aligned_cols=347  Identities=15%  Similarity=0.188  Sum_probs=256.1

Q ss_pred             eeEecccCCCCc-eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          326 VAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       326 ~~~~l~~h~~~V-~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...+|+||++.| +|++|  ||+ +||+|+.||+|+|||+.+++.+.+                   +.+|.+.|.+++|
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~   61 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKY   61 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EECCCCCEEEEEE
Confidence            357899999887 55554  677 699999999999999999988765                   7789999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|+ .+|++|+.|++|++|+....+..... ....+...+....+++++.  .+++++.|+.|++||+.++..+......
T Consensus        62 s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~  137 (355)
T d1nexb2          62 AHG-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE  137 (355)
T ss_dssp             ETT-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC----------
T ss_pred             cCC-CEEEEEeccccccccccccccccccc-ccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccccc
Confidence            986 58999999999999999987644322 2223444566778888888  8999999999999999988766544322


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      ..... ....+......+                    .....+...+  ..+.++++.++.+..    ++.+++||..+
T Consensus       138 ~~~~~-~~~~~~~~~~~~--------------------~~~~~~~~~v--~~~~~~~~~~~~~~~----d~~i~~~d~~~  190 (355)
T d1nexb2         138 HDYPL-VFHTPEENPYFV--------------------GVLRGHMASV--RTVSGHGNIVVSGSY----DNTLIVWDVAQ  190 (355)
T ss_dssp             -CCCE-EESCTTTCTTEE--------------------EEEECCSSCE--EEEEEETTEEEEEET----TSCEEEEETTT
T ss_pred             ceecc-ceecccccccee--------------------eeeeeccccc--cccccccceeeeecc----cceeeeeeccc
Confidence            22111 111111111111                    1111222223  345678888988876    55699999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ++.+....++.   ..+.++.++|+++.+++++.|+.|++||..++..+..+..|.  ..|.+++++  ++++++++.||
T Consensus       191 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~~~~~dg  263 (355)
T d1nexb2         191 MKCLYILSGHT---DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLS--DKFLVSAAADG  263 (355)
T ss_dssp             TEEEEEECCCS---SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCCCEEEEC--SSEEEEECTTS
T ss_pred             ccceeeeeccc---cccccccccccceeeecccccceEEeeecccccccccccccc--ccccccccc--cceeeeeeccc
Confidence            99998888877   789999999999999999999999999999999999988664  468888886  57899999999


Q ss_pred             eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1092)
                      .|++||+.+......                                                                 
T Consensus       264 ~i~iwd~~~~~~~~~-----------------------------------------------------------------  278 (355)
T d1nexb2         264 SIRGWDANDYSRKFS-----------------------------------------------------------------  278 (355)
T ss_dssp             EEEEEETTTCCEEEE-----------------------------------------------------------------
T ss_pred             ccccccccccceecc-----------------------------------------------------------------
Confidence            999999875321100                                                                 


Q ss_pred             ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001358          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  804 (1092)
                                       +.                                                         +...
T Consensus       279 -----------------~~---------------------------------------------------------~~~~  284 (355)
T d1nexb2         279 -----------------YH---------------------------------------------------------HTNL  284 (355)
T ss_dssp             -----------------EE---------------------------------------------------------CTTC
T ss_pred             -----------------cc---------------------------------------------------------cCCc
Confidence                             00                                                         0111


Q ss_pred             eeEEEEecCCCEEEEEeCCeEEEEEcCCceeeE-EecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001358          805 VPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1092)
                      ....+++++++++++++|+.|++||+++++.+. .+.+|...|.+++|+| + .++++++.||+++||.+
T Consensus       285 ~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG-K-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             CCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence            112356788899999999999999999999885 4677889999999998 5 58888999998776643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.9e-33  Score=307.41  Aligned_cols=346  Identities=14%  Similarity=0.185  Sum_probs=267.1

Q ss_pred             eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCe
Q 001358          522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1092)
Q Consensus       522 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~  601 (1092)
                      +.++.+|...|.. ++++++++|++++.    ++.|++||..+++.+..+.+|.   +.|.+++|+|+ +++++|+.|++
T Consensus         5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2           5 RTTLRGHMTSVIT-CLQFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             EEEEECCSSSCEE-EEEEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTCC
T ss_pred             cEEECCcCCCcEE-EEEECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEecccc
Confidence            4567888877633 35567899999986    6779999999999999999988   89999999986 58999999999


Q ss_pred             EEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccc
Q 001358          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  681 (1092)
                      |++|+....+..................+++++.++++++.|+.|++|++.+..............              
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--------------  141 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP--------------  141 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC--------------
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec--------------
Confidence            999999999888877666554445667788999999999999999999988654332211000000              


Q ss_pred             cccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCc-EEEEeecCCeeEE
Q 001358          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM  760 (1092)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~l  760 (1092)
                                                                               .....+... .++....      
T Consensus       142 ---------------------------------------------------------~~~~~~~~~~~~~~~~~------  158 (355)
T d1nexb2         142 ---------------------------------------------------------LVFHTPEENPYFVGVLR------  158 (355)
T ss_dssp             ---------------------------------------------------------EEESCTTTCTTEEEEEE------
T ss_pred             ---------------------------------------------------------cceeccccccceeeeee------
Confidence                                                                     000000000 0000000      


Q ss_pred             eeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEe
Q 001358          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI  839 (1092)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~  839 (1092)
                                                             .|...+  ..+.+++++++++. |+.+++||+.+++.+...
T Consensus       159 ---------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         159 ---------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             ---------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ---------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeee
Confidence                                                   133333  34556788888887 799999999999999999


Q ss_pred             cCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCc
Q 001358          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1092)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~  919 (1092)
                      .++...+.++.++| ++.++++++.||.|++||+.++..+..+.+|...|.+++|+  +++|++++.||.|++||+.+..
T Consensus       198 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         198 SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred             eccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc
Confidence            99999999999999 89999999999999999999999999999999999999997  4699999999999999999865


Q ss_pred             eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC
Q 001358          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD  999 (1092)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D  999 (1092)
                      ..    +......     .....++++++.+++++.|+.|+|||+++++++.....+|...|.+++|+|+ .++++++.|
T Consensus       275 ~~----~~~~~~~-----~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d  344 (355)
T d1nexb2         275 RK----FSYHHTN-----LSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD  344 (355)
T ss_dssp             EE----EEEECTT-----CCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred             ee----cccccCC-----ceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC
Confidence            32    1211111     1233467899999999999999999999999987777889999999999987 478889999


Q ss_pred             CcEEEEEC
Q 001358         1000 GTLSIHEA 1007 (1092)
Q Consensus      1000 g~i~vwd~ 1007 (1092)
                      |.++||.+
T Consensus       345 g~~~l~~~  352 (355)
T d1nexb2         345 GQSFLEIL  352 (355)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99777654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-33  Score=311.50  Aligned_cols=264  Identities=12%  Similarity=0.058  Sum_probs=209.6

Q ss_pred             CCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEE
Q 001358          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1092)
Q Consensus       334 ~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las  413 (1092)
                      .++|+|++|||||+ +||+|+.|+.|+|||+++++....                 ..+.+|.++|.+++|+|++++||+
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~-----------------~~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQV-----------------HELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEE-----------------EEecCCCCCEEEEEECCCCCEEEE
Confidence            35899999999998 789999999999999988764432                 127789999999999999999999


Q ss_pred             EeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCcee----EEEecCCcceE
Q 001358          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY  489 (1092)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~v~  489 (1092)
                      |+.|++|+|||+.++.... ...+.+|...|.+++|+|+++  .+++++.|++|++|+++.....    .....|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            9999999999998765332 335678999999999999999  8999999999999998776543    33456889999


Q ss_pred             EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE
Q 001358          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1092)
Q Consensus       490 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1092)
                      +++|+|  ++.+|++|+.||+|++|+.............          +.+                  .+...++...
T Consensus       146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~~------------------~~~~~~~~~~  195 (371)
T d1k8kc_         146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PWG------------------SKMPFGELMF  195 (371)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TTB------------------SCCCTTCEEE
T ss_pred             cccccc--cccceeccccCcEEEEEeeccCccccccccc----------ccc------------------ccccceeeee
Confidence            999955  7789999999999999998754322111100          000                  0112334444


Q ss_pred             EEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEE
Q 001358          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1092)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw  649 (1092)
                      ...+|.   ..|.+++|+|+++++++++.|+.|++||+.++..+..+..+.  ..|.+++|+|+++++++|. |+.+++|
T Consensus       196 ~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         196 ESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             ECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred             eccCcc---CcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEE
Confidence            555555   889999999999999999999999999999999999988664  4689999999998887655 6777776


Q ss_pred             ECCCC
Q 001358          650 ETPES  654 (1092)
Q Consensus       650 ~~~~~  654 (1092)
                      .....
T Consensus       270 ~~~~~  274 (371)
T d1k8kc_         270 TYDSA  274 (371)
T ss_dssp             EEETT
T ss_pred             EeeCC
Confidence            65543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-32  Score=298.60  Aligned_cols=287  Identities=11%  Similarity=0.111  Sum_probs=243.1

Q ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEEC
Q 001358          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1092)
Q Consensus       393 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~  472 (1092)
                      ..+.+.+..++++|+|+.||.++ ++.|.+||+.++....   .+.+|.+.|++++|+|+|+  +|++|+.||+|+|||+
T Consensus        14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~---~~~~H~~~v~~~~~sp~g~--~latg~~dg~i~iwd~   87 (311)
T d1nr0a1          14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT   87 (311)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred             CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE---EEcCCCCCEEEEEEeCCCC--eEeccccCceEeeeee
Confidence            34566778899999999999986 5569999999876555   5789999999999999999  8999999999999999


Q ss_pred             CCCcee--EEEecCCcceEEEeecccCCccEEEEEec--CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCE-EEEE
Q 001358          473 VTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR-LFSC  547 (1092)
Q Consensus       473 ~~~~~~--~~~~~~~~~v~~i~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~-l~~~  547 (1092)
                      .++...  ..+.+|..+|.+++|++  ++.++++++.  ++.+++|++++.+....+..|...|.+++|+|++++ ++++
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~--d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sg  165 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG  165 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred             eccccccccccccccCccccccccc--cccccccccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            988654  56788999999999954  6788888876  456999999999888888999999999999999986 5566


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCC-----CCC
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGL  622 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~-----~~~  622 (1092)
                      +.    ++.|++||.++++....+.+|.   ..|.++.|+|+++++++++.|+.|++||..++.....+...     ++.
T Consensus       166 s~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~  238 (311)
T d1nr0a1         166 SD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS  238 (311)
T ss_dssp             ET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred             cc----cccccccccccccccccccccc---ccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence            54    6679999999999999998887   89999999999999999999999999999999888877543     234


Q ss_pred             CCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeeccccccc-ceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ..|.+++|+|++++|++|+.||.|+|||+.+++.+..+..+... ...+.+.                      +++..+
T Consensus       239 ~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~----------------------~~~~~l  296 (311)
T d1nr0a1         239 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII----------------------WTKQAL  296 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE----------------------ECSSCE
T ss_pred             ccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEE----------------------ecCCEE
Confidence            56899999999999999999999999999999888877655432 1122221                      346679


Q ss_pred             eeeccccccceecee
Q 001358          702 ISVEAENKSEVEKPL  716 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~  716 (1092)
                      ++++.||.|++||.+
T Consensus       297 ~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         297 VSISANGFINFVNPE  311 (311)
T ss_dssp             EEEETTCCEEEEETT
T ss_pred             EEEECCCEEEEEeCC
Confidence            999999999999953

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.7e-32  Score=298.16  Aligned_cols=286  Identities=14%  Similarity=0.183  Sum_probs=257.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      |.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+.   .+..|...|.+++|+|+++  ++++|+.|+.+++|+
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence            88999999999999999999999999999999999986554   6788999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEE
Q 001358          472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       472 ~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ....    .....+.+|...........   +..+.....+.....+.................+....+.+.+.+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            7654    34566777877776655432   3578889999999999988887777778888899999999999999998


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCce
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1092)
                      ..    ++.|++||..+++.+..+.+|.   ..|.+++|+|+++++++|+.||.|++||+........+........+.+
T Consensus       203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            76    6679999999999999999887   8999999999999999999999999999999999888877666677899


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccc
Q 001358          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1092)
Q Consensus       628 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1092)
                      ++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+                      |+++++++++.|
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~D  333 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEccC
Confidence            9999999999999999999999999999999999999999999986                      788999999999


Q ss_pred             cccceec
Q 001358          708 NKSEVEK  714 (1092)
Q Consensus       708 ~~i~~w~  714 (1092)
                      |.|++||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-31  Score=289.88  Aligned_cols=330  Identities=16%  Similarity=0.225  Sum_probs=262.1

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ...++|+||++.|.+ +++++|+ +||||+.||+|+|||+.+++.+.+                   +.+|...|.+++|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~   65 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQM   65 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEEe
Confidence            455789999999975 4777898 689999999999999999998865                   7789999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      +|+  +|++|+.|+.+++|+........   ....+...+....+.+  .  .++.+..|+.+.+|+..+++....+..+
T Consensus        66 ~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~  136 (342)
T d2ovrb2          66 RDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGH  136 (342)
T ss_dssp             ETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred             CCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecc
Confidence            975  99999999999999998764332   3444555566555543  3  5788999999999999999988887665


Q ss_pred             CcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                      .........    ....+++++.|+.|++||.........+..+...+.  .+++++.++++++.    ++.|++||..+
T Consensus       137 ~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~~~----dg~i~~~d~~~  206 (342)
T d2ovrb2         137 VAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDGIHVVSGSL----DTSIRVWDVET  206 (342)
T ss_dssp             SSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEE--EEEECSSEEEEEET----TSCEEEEETTT
T ss_pred             cccceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCcccccc--cccCCCCEEEEEeC----CCeEEEeeccc
Confidence            555444332    345789999999999999998888888877766554  45668899999986    56799999999


Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      ++.+..+.+|.   ..+.++.+++  +++++++.||.|++||....+....+..+.. ......++.++++++++++.||
T Consensus       207 ~~~~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~Dg  280 (342)
T d2ovrb2         207 GNCIHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDG  280 (342)
T ss_dssp             CCEEEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETTS
T ss_pred             ceeeeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCCC
Confidence            99999999887   7888877765  6999999999999999999988888765432 1233445556678999999999


Q ss_pred             eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1092)
                      .|++||+.+++.+..+...                                                             
T Consensus       281 ~i~iwd~~tg~~i~~~~~~-------------------------------------------------------------  299 (342)
T d2ovrb2         281 TVKLWDLKTGEFIRNLVTL-------------------------------------------------------------  299 (342)
T ss_dssp             EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred             EEEEEECCCCCEEEEEecc-------------------------------------------------------------
Confidence            9999999988766544311                                                             


Q ss_pred             ecccCCccccccEEEEEEecCCcEEEEeecCCe----eEEeeecC
Q 001358          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  765 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----i~lw~~~~  765 (1092)
                          ...+|...|.+++|+|++..+++++.||+    +++||++.
T Consensus       300 ----~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         300 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ----cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence                01126677899999999998888888874    88888754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-31  Score=286.65  Aligned_cols=293  Identities=13%  Similarity=0.144  Sum_probs=226.7

Q ss_pred             CeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      |+..+.+.||.   ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.. .+...|.+++|+|++++ ++++.|+
T Consensus         2 g~~~~~~~GH~---~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~h~~~v~~v~~~~~g~~-~~~~~d~   76 (299)
T d1nr0a2           2 GSIDQVRYGHN---KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD-VHATMITGIKTTSKGDL-FTVSWDD   76 (299)
T ss_dssp             TEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC-SCSSCEEEEEECTTSCE-EEEETTT
T ss_pred             CccceEcCCCC---CCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCCcEEEEEeecccee-eccccee
Confidence            56788999998   9999999999999999999999999999999998877642 23456899999999875 4566788


Q ss_pred             eEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccce
Q 001358          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1092)
                      .+++|+........ ..                                                               
T Consensus        77 ~v~~~~~~~~~~~~-~~---------------------------------------------------------------   92 (299)
T d1nr0a2          77 HLKVVPAGGSGVDS-SK---------------------------------------------------------------   92 (299)
T ss_dssp             EEEEECSSSSSSCT-TS---------------------------------------------------------------
T ss_pred             eEEEeccCCccccc-cc---------------------------------------------------------------
Confidence            99999865321000 00                                                               


Q ss_pred             ecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCC
Q 001358          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1092)
Q Consensus       725 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  804 (1092)
                                 .+                                                     ..       .+...
T Consensus        93 -----------~~-----------------------------------------------------~~-------~~~~~  101 (299)
T d1nr0a2          93 -----------AV-----------------------------------------------------AN-------KLSSQ  101 (299)
T ss_dssp             -----------CC-----------------------------------------------------EE-------ECSSC
T ss_pred             -----------cc-----------------------------------------------------cc-------ccccc
Confidence                       00                                                     00       14455


Q ss_pred             eeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeE-eec
Q 001358          805 VPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLE  883 (1092)
Q Consensus       805 v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~  883 (1092)
                      +.++++++++++++++.++.+.+|+...  .....  ....+.+++|+| ++++|++|+.||.|++||+.+++... ...
T Consensus       102 ~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~  176 (299)
T d1nr0a2         102 PLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTI  176 (299)
T ss_dssp             EEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccc--ccccc--cccccccccccc-cccccccccccccccccccccccccccccc
Confidence            6778888899888888888999998543  22222  345678999999 89999999999999999999877543 345


Q ss_pred             cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCCcEEEE
Q 001358          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY  962 (1092)
Q Consensus       884 ~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~~v~lw  962 (1092)
                      .|...|++++|+|++++|++++.|+.|++||+.++....  ......+|..   .|.+++|+|++++|++ +.|+.|++|
T Consensus       177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~~~~h~~---~v~~l~~s~~~~~l~sgs~dg~i~iw  251 (299)
T d1nr0a2         177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNSWTFHTA---KVACVSWSPDNVRLATGSLDNSVIVW  251 (299)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCCCCCCSS---CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--cccccccccc---ccccccccccccceEEEcCCCEEEEE
Confidence            699999999999999999999999999999998755322  2233344443   7999999999999999 578999999


Q ss_pred             EcCCceeeeee-ccCC-CcCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 001358          963 EAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1092)
Q Consensus       963 d~~~~~~~~~~-~~~h-~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~ 1008 (1092)
                      |+.++...... ...| ...|.++. ++++++|++++.||+|++||++
T Consensus       252 d~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         252 NMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             ETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEECC
T ss_pred             ECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEecc
Confidence            99877543322 2334 55666664 5677899999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-31  Score=288.88  Aligned_cols=320  Identities=20%  Similarity=0.292  Sum_probs=250.0

Q ss_pred             ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEE
Q 001358          433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK  512 (1092)
Q Consensus       433 ~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~  512 (1092)
                      ....++||.+.|.+ +++++|+  +|+||+.||+|+|||+.++++++++.+|...|.+++|++    .+|++++.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccc
Confidence            34478999999865 4677888  899999999999999999999999999999999999953    3899999999999


Q ss_pred             EEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE
Q 001358          513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  592 (1092)
Q Consensus       513 vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  592 (1092)
                      +|+................+......  ...+..+..    +..+.+|+..+++....+....   ...  ....+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~  149 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AAV--RCVQYDGRR  149 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SCE--EEEEECSSC
T ss_pred             ccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---ccc--eeeccccce
Confidence            99998877776666666666554443  345555544    6679999999998877776644   222  234455678


Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeee
Q 001358          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV  672 (1092)
Q Consensus       593 l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~  672 (1092)
                      +++++.|+.+++||......+..+..+.    .....+++++.++++++.||.|++|++..++.+....           
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~-----------  214 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-----------  214 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC-----------
T ss_pred             eeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEec-----------
Confidence            8999999999999999988888887553    3556677788999999999999999987653332211           


Q ss_pred             cCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEe
Q 001358          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  752 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  752 (1092)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (342)
T d2ovrb2         215 --------------------------------------------------------------------------------  214 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcC
Q 001358          753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM  831 (1092)
Q Consensus       753 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~  831 (1092)
                                                                     +|...+.+++++  ++++++++ |+.|++||+.
T Consensus       215 -----------------------------------------------~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~  245 (342)
T d2ovrb2         215 -----------------------------------------------GHQSLTSGMELK--DNILVSGNADSTVKIWDIK  245 (342)
T ss_dssp             -----------------------------------------------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             -----------------------------------------------ccccceeEEecC--CCEEEEEcCCCEEEEEecc
Confidence                                                           134444454443  45777776 6888888888


Q ss_pred             CceeeEEecC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeec-----cccCCeEEEEEcCCCCEEEE
Q 001358          832 TFKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILVS  903 (1092)
Q Consensus       832 ~~~~~~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~l~s  903 (1092)
                      ..+....+..   |...+.++++++   +++++|+.||.|++||+++++++..+.     +|.+.|++++|+|++.+||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         246 TGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             cccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            7777776654   445667777654   699999999999999999999887763     58889999999999999999


Q ss_pred             EeCCCc----EEEEEcCC
Q 001358          904 SGGDAQ----IFVWDVDG  917 (1092)
Q Consensus       904 ~s~Dg~----i~iwd~~~  917 (1092)
                      |+.||+    |++||++.
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            999996    99999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-31  Score=295.85  Aligned_cols=306  Identities=13%  Similarity=0.119  Sum_probs=236.7

Q ss_pred             CCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe--EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 001358          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  606 (1092)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd  606 (1092)
                      ..+|++++|+|||++|++++.    ++.|++||..+++  .+..+.+|.   +.|.+++|+|++++|++++.|++|++||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            357999999999999999875    5679999998775  566778887   8999999999999999999999999999


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCC
Q 001358          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      +.++.....+....+...|.+++|+|+++.+++++.|+.+++|+...........                         
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-------------------------  134 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-------------------------  134 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-------------------------
Confidence            9988877776665666679999999999999999999999999876542211110                         


Q ss_pred             ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCC
Q 001358          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                                                               .....|...|.+++|+|+++.+++++.||.+++|+....
T Consensus       135 -----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         135 -----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             -----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             -----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence                                                     001126678899999999999999999999999997654


Q ss_pred             ccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCC
Q 001358          767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT  845 (1092)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~  845 (1092)
                      .....      .....|+............  .+|...|.+++|+|+|++|++++ |+.|++||+.+++.+..+..|..+
T Consensus       174 ~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  245 (371)
T d1k8kc_         174 EVEER------PAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP  245 (371)
T ss_dssp             TTSCC------CCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred             ccccc------cccccccccccceeeeeec--cCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc
Confidence            32111      1122222222211111122  24888999999999999999998 799999999999999999999999


Q ss_pred             eEEEEEcCCCCCEEEEEeCCCeEEEEEcCC--ceee---------------------------------------Eeecc
Q 001358          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARS--SEVI---------------------------------------SKLEG  884 (1092)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~--~~~~---------------------------------------~~l~~  884 (1092)
                      |.+++|+| ++++|++|. |+.+++|....  +...                                       .....
T Consensus       246 v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (371)
T d1k8kc_         246 LLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL  323 (371)
T ss_dssp             EEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred             ceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence            99999999 888888665 67666665432  1110                                       00123


Q ss_pred             ccCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcCC
Q 001358          885 HSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG  917 (1092)
Q Consensus       885 h~~~V~~l~~spdg----~~l~s~s~Dg~i~iwd~~~  917 (1092)
                      |.+.|+++++.+.+    ..++|+|.||.|+|||+++
T Consensus       324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            88999999998754    4689999999999999976

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=2.2e-30  Score=283.40  Aligned_cols=290  Identities=12%  Similarity=0.174  Sum_probs=225.4

Q ss_pred             CceEEeecCCCceEEEEEcC-cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCC-CCcEEEEEECC--CCCEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~-d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h-~~~V~~l~~sp--dg~~l  411 (1092)
                      .+++++|+|+|+. +|.++. ...|+.||.........                 ..+.+| ...|++++|+|  +|++|
T Consensus        19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1          19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred             CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence            5689999999995 565543 33456666544332211                 115566 56899999998  67899


Q ss_pred             EEEeCCCEEEEEEccCCCCccce-----EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCc
Q 001358          412 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1092)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~-----~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~  486 (1092)
                      |+|+.||+|+|||+..++.....     ..+..|.++|.+++|+++++.+..++++.++.+++|++++++.+..+.+|..
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            99999999999999876654322     2345688899999999999953333445678899999999999999999999


Q ss_pred             ceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEEEecC-CCEEEEEecCCCCceeEEEEeC
Q 001358          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       487 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s~d-g~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      .|.+++|++.. ..++++++.||.+++||....+.....   ..+...|.+++|+|+ +.++++++.    ++.|++||.
T Consensus       161 ~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~  235 (325)
T d1pgua1         161 RINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG  235 (325)
T ss_dssp             CEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred             ccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence            99999997653 246889999999999999876655543   345667999999997 577888876    566999999


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEc---CCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC-CCEEE
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA  638 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~  638 (1092)
                      ++++.+..+.+|.   ..+..+.|+   |++++|++++.|+.|+|||+++++++..+..+.+...+..+++.+. +.+++
T Consensus       236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (325)
T d1pgua1         236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  312 (325)
T ss_dssp             TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence            9999999999877   444444443   6789999999999999999999999999887766545555555543 45889


Q ss_pred             EEeCCCeEEEEEC
Q 001358          639 VIANENRIKILET  651 (1092)
Q Consensus       639 ~~~~dg~i~iw~~  651 (1092)
                      +++.||.|++||+
T Consensus       313 s~s~dg~i~vwdl  325 (325)
T d1pgua1         313 SLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSCEEEEET
T ss_pred             EEECCCEEEEEEC
Confidence            9999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.1e-29  Score=274.19  Aligned_cols=286  Identities=13%  Similarity=0.141  Sum_probs=218.7

Q ss_pred             cEEEEEEecCCcEEEEeecCC-eeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCC-CCCeeEEEEec-
Q 001358          736 KISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK-  812 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg-~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~v~~~~~s~-  812 (1092)
                      .+.+++|+|++..++.++.+. .++.|+.....                    ......  +.  +| ...|++++|+| 
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~--------------------~~~~~~--~~--gh~~~~v~~v~fsP~   74 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------------VPPVVQ--FT--GHGSSVVTTVKFSPI   74 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCS--------------------SCSEEE--EC--TTTTSCEEEEEECSS
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCC--------------------ccceEE--Ee--CCCCCCEEEEEEeeC
Confidence            456789999999988876553 34444422111                    011111  11  24 56899999998 


Q ss_pred             -CCCEEEEEe-CCeEEEEEcCCceee--------EEecCCCCCeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeeE
Q 001358          813 -NDAYLFSAS-GGVISLYIVMTFKTI--------LTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVIS  880 (1092)
Q Consensus       813 -dg~~l~~~s-dg~i~iwd~~~~~~~--------~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~  880 (1092)
                       ++++|++++ ||+|+|||+..++..        ..+..|.+.|.+++|++ ++++|++++.  ++.+++|+.++++.+.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence             678999998 799999998754322        33556888999999999 8888887764  6689999999999999


Q ss_pred             eeccccCCeEEEEEcCCCCE-EEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC-CCEEEE-EeCC
Q 001358          881 KLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHET  957 (1092)
Q Consensus       881 ~l~~h~~~V~~l~~spdg~~-l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~la~-~~d~  957 (1092)
                      .+.+|...|.+++|+|++.+ +++++.|+.|++||+...+...  ......++.   ..|.+++|+|| +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence            99999999999999999875 7789999999999998754322  233333333   37999999997 577887 6789


Q ss_pred             cEEEEEcCCceeeeeeccCCCcCEEEEEEe---cCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccce
Q 001358          958 HLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1034 (1092)
Q Consensus       958 ~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1034 (1092)
                      .|++||+.+++.+.. +.+|..++.++.|+   +||++|++++.|++|+|||+.+++.+..+....      +...+..+
T Consensus       229 ~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~  301 (325)
T d1pgua1         229 KISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK------QQLGNQQV  301 (325)
T ss_dssp             CEEEEETTTCCEEEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT------TCGGGCEE
T ss_pred             ceeeeeecccccccc-ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC------CcccCeEE
Confidence            999999999998887 45787777776666   789999999999999999999999987776222      12223445


Q ss_pred             EEEECCCCCCEEEEEeCCCcEEEEec
Q 001358         1035 AIAAHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1035 ~~~~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      ++.+.+  +.+|++++.||+|++||+
T Consensus       302 ~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         302 GVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEECC--CCEEEEEECCCEEEEEEC
Confidence            555554  468999999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=3.2e-27  Score=267.52  Aligned_cols=368  Identities=11%  Similarity=0.043  Sum_probs=265.7

Q ss_pred             eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccC
Q 001358          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1092)
Q Consensus       348 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~  427 (1092)
                      .++++.+.||+|.|||..+++.+..                   +..| ..+..++|||||++|++++.|++|.+||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            4578999999999999999999876                   3334 4699999999999999999999999999998


Q ss_pred             CCCcc--ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEE
Q 001358          428 GSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1092)
Q Consensus       428 ~~~~~--~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~  505 (1092)
                      ++...  .+....+|.+.+.+.+|+|||++ ++++++.+++|++||.++++.+..+..|...+..+.+.+.         
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------  162 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------  162 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence            76432  22233467778888899999995 4578899999999999999999999887766655444322         


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                                              .....+.++|+|..++....   .++.|.+||..+++.........  ...+..++
T Consensus       163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~  213 (432)
T d1qksa2         163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG  213 (432)
T ss_dssp             ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred             ------------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccce
Confidence                                    23345778999988776653   26679999998877655444332  25688999


Q ss_pred             EcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCC---CCCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeeec
Q 001358          586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA  660 (1092)
Q Consensus       586 ~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1092)
                      |+|+++++++++ .++.+.++|..+++....+.....   ........+...+...++.. .++.+.+|.......    
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----  289 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----  289 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----
Confidence            999999888876 456899999999988887764321   11223333333444443332 256666665442210    


Q ss_pred             ccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEE
Q 001358          661 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL  740 (1092)
Q Consensus       661 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l  740 (1092)
                                                                                            ..+...+...
T Consensus       290 ----------------------------------------------------------------------~~~~~~v~~~  299 (432)
T d1qksa2         290 ----------------------------------------------------------------------PDNAWKILDS  299 (432)
T ss_dssp             ----------------------------------------------------------------------TTTBTSEEEE
T ss_pred             ----------------------------------------------------------------------cccccEEEEE
Confidence                                                                                  0144557777


Q ss_pred             EEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEE
Q 001358          741 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  820 (1092)
Q Consensus       741 ~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~  820 (1092)
                      .+++++..+++++.+...++|......                                .|.....++++ ||++.++++
T Consensus       300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------------~~~~~~~sv~v-pDg~~la~~  346 (432)
T d1qksa2         300 FPALGGGSLFIKTHPNSQYLYVDATLN--------------------------------PEAEISGSVAV-FDIKAMTGD  346 (432)
T ss_dssp             EECSCSCCCCEECCTTCSEEEEECTTC--------------------------------SSHHHHTCEEE-EEGGGCCCS
T ss_pred             EEcCCCCeEEEEecCCccceeecccCC--------------------------------CCCCeeeEEEE-Eechhhccc
Confidence            888888888888888888888643211                                12223334555 899999999


Q ss_pred             e-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEe-----CCCeEEEEEcCCceeeEeeccc
Q 001358          821 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH  885 (1092)
Q Consensus       821 s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h  885 (1092)
                      + |+.+++|++.++..   +..|...+.+++||| ||++|+++.     .+|.|.|||..++++...+++.
T Consensus       347 s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         347 GSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             SSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             ccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            8 68999999866533   335777899999999 888776553     4689999999999998888753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.1e-27  Score=252.57  Aligned_cols=269  Identities=11%  Similarity=0.131  Sum_probs=213.3

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      +.+++|+||.++|++++|+|     |++|+.||+|++||+.++                        ..+|...|.+++|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~   54 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN   54 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred             ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence            56789999999999999987     799999999999998764                        3469999999999


Q ss_pred             CCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecC
Q 001358          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1092)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~  484 (1092)
                      ++++ .+++++.|++|++|++...+          ....+.++++++++.  .+++ +.++.+.+|+..+++.+..+..+
T Consensus        55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~  120 (287)
T d1pgua2          55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVL-TNDDDLLILQSFTGDIIKSVRLN  120 (287)
T ss_dssp             CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEE-ETTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEE-eecccceeeeccceeeeeecccc
Confidence            9765 57889999999999986531          233467888999887  4554 55678999999999998888644


Q ss_pred             CcceEEEeecccCCccEEEEEecC-CeEEEEEcCCCCceEEec-CCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          485 GAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       485 ~~~v~~i~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                       ..+.++..    ++..+++++.+ +.+++|++.......... .+...+.+++|+|++.+|++++.    ++.|++||.
T Consensus       121 -~~~~~~~~----~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~  191 (287)
T d1pgua2         121 -SPGSAVSL----SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL  191 (287)
T ss_dssp             -SCEEEEEE----CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred             -ceeeeeec----cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence             44444433    34566666666 579999987766555544 35668999999999999999986    556999999


Q ss_pred             CCCeEEEE-EeeccccCCceEEEEEcCC----------CCEEEEEeCCCeEEEEECCC-CceEEEEeCCCCCCCCceEEE
Q 001358          563 SEGAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       563 ~~~~~~~~-~~~~~~~~~~v~~~~~~~~----------~~~l~~~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                      .++..... +.+|.   ..|.+++|+|.          +.++++|+.|++|++||+++ ++.+..+..|  ...|.+++|
T Consensus       192 ~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~  266 (287)
T d1pgua2         192 QSREVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLW  266 (287)
T ss_dssp             TTTEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEE
T ss_pred             cccccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEE
Confidence            99887543 45555   88999999875          46899999999999999977 4555555544  456999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEC
Q 001358          631 NKNGTLLAVIANENRIKILET  651 (1092)
Q Consensus       631 s~~~~~l~~~~~dg~i~iw~~  651 (1092)
                      +|++ .+++++.|+.|++|++
T Consensus       267 ~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         267 ETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EETT-EEEEEETTSCEEEEEE
T ss_pred             CCCC-EEEEEECCCeEEEEEE
Confidence            9986 5889999999999985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-25  Score=240.77  Aligned_cols=274  Identities=20%  Similarity=0.285  Sum_probs=220.3

Q ss_pred             eEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ++...+|+..|+|++|  ||+ +||+|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|  
T Consensus         8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--   63 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--   63 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred             EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--
Confidence            4556788889998765  787 699999999999999999988875                   7789999999887  


Q ss_pred             CCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce---eEEEec
Q 001358          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG  483 (1092)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~~~~  483 (1092)
                      ++++|++|+.|+.|++|++..+....   ....+..  ....+.+...  .++++..++.+.+||..+...   ...+..
T Consensus        64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             ccceeecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccc
Confidence            67899999999999999999876443   2222322  2334455555  689999999999999887654   345567


Q ss_pred             CCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1092)
                      |...+..+.+.    ...+++++.|+.|++||..+.+....+..+...+..+.++  +.++++++.    ++.|++||..
T Consensus       137 ~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~  206 (293)
T d1p22a2         137 HRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE  206 (293)
T ss_dssp             CSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred             cccccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecc
Confidence            88888877663    2478899999999999999999888888888888776664  568888876    5679999999


Q ss_pred             CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC---------CceEEEEeCCCCCCCCceEEEccCC
Q 001358          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG  634 (1092)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~~  634 (1092)
                      ++..+..+.++.   ..+..  +.+++.++++|+.||.|++||+..         ...+..+..|.  ..|.+++|+  +
T Consensus       207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~--~~V~~v~~d--~  277 (293)
T d1p22a2         207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS--GRVFRLQFD--E  277 (293)
T ss_dssp             TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS--SCCCCEEEC--S
T ss_pred             cceeeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC--CCEEEEEEc--C
Confidence            999999888876   56654  566788999999999999999743         34566776654  468899884  6


Q ss_pred             CEEEEEeCCCeEEEEE
Q 001358          635 TLLAVIANENRIKILE  650 (1092)
Q Consensus       635 ~~l~~~~~dg~i~iw~  650 (1092)
                      ++|++++.||+|++||
T Consensus       278 ~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEECCSSSEEEEEC
T ss_pred             CEEEEEecCCEEEEeC
Confidence            7899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-27  Score=259.05  Aligned_cols=297  Identities=9%  Similarity=0.013  Sum_probs=216.7

Q ss_pred             ceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      ++++.+++|++.|++|+|||+|+ +||+|+.||+|+|||++++.......                ...+|..+|.+++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f   64 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNF   64 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEE
Confidence            35688899999999999999998 79999999999999998876543211                13369999999999


Q ss_pred             CCC-CCEEEEEeCCCEEEEEEccCCCCccceEEeccccc-ceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEE-
Q 001358          405 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG-NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1092)
Q Consensus       405 spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~-~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-  481 (1092)
                      +|+ +.+|++|+.|+.|++|++..+....   ....+.. ......+.+++.  .+++++.|+++++||++++...... 
T Consensus        65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             eCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence            986 5689999999999999999876544   2333333 344555666666  7999999999999998755433222 


Q ss_pred             ---ecCCcc--eEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEe-cCCCEEEEEecCCC
Q 001358          482 ---EGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYS-ANGRRLFSCGTSKE  552 (1092)
Q Consensus       482 ---~~~~~~--v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~  552 (1092)
                         ..+...  .....+  ..++..+++++.||.|++||+.......   ........+.+..+. .++..+++++.   
T Consensus       140 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---  214 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---  214 (342)
T ss_dssp             EESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred             cccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence               222222  222233  3355789999999999999998765433   223334445555544 46677777765   


Q ss_pred             CceeEEEEeCCCCeEE------EEE------eeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCC
Q 001358          553 GESFLVEWNESEGAIK------RTY------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~------~~~------~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~  620 (1092)
                       ++.+.+|+.......      ..+      ..+..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus       215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~  293 (342)
T d1yfqa_         215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence             566888876543221      111      1112234678999999999999999999999999999999988875432


Q ss_pred             CCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          621 GLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       621 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                         .+..++|+|+++++++++.|+.+++|...
T Consensus       294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         294 ---EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             ---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence               35678999999999999999888877543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.6e-26  Score=246.28  Aligned_cols=270  Identities=10%  Similarity=0.089  Sum_probs=217.6

Q ss_pred             CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCcccc
Q 001358          655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  734 (1092)
Q Consensus       655 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  734 (1092)
                      ++++.+.+|..+|++++++                      |    +++|+.||+|++|++....           ..|.
T Consensus         4 ~~i~~l~gH~~~I~~l~~s----------------------~----l~sgs~Dg~v~~Wd~~~~~-----------~~h~   46 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVN----------------------P----LISGSYDGRIMEWSSSSMH-----------QDHS   46 (287)
T ss_dssp             EEEEEECCCSSCEEEEETT----------------------T----TEEEETTSCEEETTTTEEE-----------CCCC
T ss_pred             ceeEEECCCCCceEEEEEC----------------------c----EEEEeCCCeEEEEECCCCC-----------CCCC
Confidence            5778899999999999886                      2    8999999999999976432           2488


Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCC
Q 001358          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg  814 (1092)
                      ..|.++++++++. +++++.|+.+++|++....                                 ....+.++++++++
T Consensus        47 ~~V~~~~~~~~~~-~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~~   92 (287)
T d1pgua2          47 NLIVSLDNSKAQE-YSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANNDG   92 (287)
T ss_dssp             SCEEEEECCSTTC-CEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSSS
T ss_pred             CCEEEEEecCCCe-EEEEeeccccccccccccc---------------------------------cccceeeeeeccCC
Confidence            8999999997665 7889999999999865321                                 33456788999999


Q ss_pred             CEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeeEeec-cccCCeEEE
Q 001358          815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTGL  892 (1092)
Q Consensus       815 ~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~-~h~~~V~~l  892 (1092)
                      ..++++.++.+.+|+..+++.+..+..+ ..  ..++++ ++..+++++.++ .+++|++...+....+. .|.+.|+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~  168 (287)
T d1pgua2          93 FTAVLTNDDDLLILQSFTGDIIKSVRLN-SP--GSAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI  168 (287)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECS-SC--EEEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred             ceEEEeecccceeeeccceeeeeecccc-ce--eeeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE
Confidence            9999888899999999999988887643 33  345666 566777777765 79999998776655554 488899999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC----------CCEEEE-EeCCcEEE
Q 001358          893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----------QTRFLL-VHETHLAI  961 (1092)
Q Consensus       893 ~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----------g~~la~-~~d~~v~l  961 (1092)
                      +|+|++++|++++.||.|++||+.+++..    .....+|..   .|.+++|+|+          +.++++ +.|++|++
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~----~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i  241 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVK----TSRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI  241 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEE----ECCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred             EeccCccccccccccccccceeecccccc----ccccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEEE
Confidence            99999999999999999999999986532    223344443   7999999875          467888 57899999


Q ss_pred             EEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 001358          962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1092)
Q Consensus       962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~ 1007 (1092)
                      ||+.++........+|...|++++|+|++ .|+|++.||+|++|++
T Consensus       242 w~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         242 YSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99987555555577999999999999987 5889999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=9e-26  Score=256.64  Aligned_cols=366  Identities=9%  Similarity=0.015  Sum_probs=247.4

Q ss_pred             EEeecCCCc-eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358          339 SMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       339 ~v~~spdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  417 (1092)
                      ...+++|.+ .++++++.||+|+|||+.+++.+.+                   +..| ..+..++|||||++|++++.|
T Consensus        23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d   82 (426)
T d1hzua2          23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRD   82 (426)
T ss_dssp             SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETT
T ss_pred             cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCC
Confidence            345666644 3457788899999999999998875                   4445 469999999999999999999


Q ss_pred             CEEEEEEccCCCCcc--ceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          418 HIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      ++|++||+.+++...  .+....+|.+.+.+++|+|||++ +++++..++.+++||..+++++..+.+|...+..+.+.+
T Consensus        83 ~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  161 (426)
T d1hzua2          83 ARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  161 (426)
T ss_dssp             SEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             CCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence            999999999987533  22233467788889999999995 456677899999999999999999988887777666644


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEE-EEeec
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGL  574 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~  574 (1092)
                      .+. ...                                +.+++++..++....   +.+.+.+++...+.... ....+
T Consensus       162 ~~~-~~~--------------------------------i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~  205 (426)
T d1hzua2         162 EPR-VAA--------------------------------IIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTSIGA  205 (426)
T ss_dssp             CCC-EEE--------------------------------EEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEEEEC
T ss_pred             CCc-eeE--------------------------------EEECCCCCEEEEecC---CCCeEEEEEeccccceeeEEecc
Confidence            322 122                                344445554444332   13345555554443222 22233


Q ss_pred             cccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCE-EE--EEeCCCeEEEEE
Q 001358          575 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LA--VIANENRIKILE  650 (1092)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~--~~~~dg~i~iw~  650 (1092)
                      .   ..+..+.|+|++++++++. .+..+.+++..+++.+................+...+.. +.  ..+.|+.+.+|+
T Consensus       206 ~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         206 A---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             C---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             C---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence            3   6788999999999988865 667799999999999888776544333333443332221 11  111233333333


Q ss_pred             CCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCC
Q 001358          651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS  730 (1092)
Q Consensus       651 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~  730 (1092)
                      ....                                                      .+                    
T Consensus       283 ~~~~------------------------------------------------------~~--------------------  288 (426)
T d1hzua2         283 TDPK------------------------------------------------------NH--------------------  288 (426)
T ss_dssp             CCTT------------------------------------------------------TC--------------------
T ss_pred             cccc------------------------------------------------------cc--------------------
Confidence            2211                                                      00                    


Q ss_pred             ccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       731 ~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                                                                           ....++.....  .  +|...+..++|
T Consensus       289 -----------------------------------------------------~~~~~~~~~~l--~--g~~~~v~~v~~  311 (426)
T d1hzua2         289 -----------------------------------------------------PQYAWKKVAEL--Q--GQGGGSLFIKT  311 (426)
T ss_dssp             -----------------------------------------------------TTTBTSEEEEE--E--CSSSCCCCEEC
T ss_pred             -----------------------------------------------------ccccceEeEEE--e--cCCCceeEEEc
Confidence                                                                 00011111111  1  36777888999


Q ss_pred             ecCCCEEEEE-------e-CCeEEEEEcCCceeeEEe---------cCCCCCeEEEEEcCCCCCEEEE-E----eCCCeE
Q 001358          811 SKNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIAI-G----MDDSTI  868 (1092)
Q Consensus       811 s~dg~~l~~~-------s-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~las-g----~~dg~v  868 (1092)
                      +||+++|++.       + +++|+|||+.+++...++         ..+...+.+++||| ||++++. +    +.+|.|
T Consensus       312 sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i  390 (426)
T d1hzua2         312 HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSAL  390 (426)
T ss_dssp             CTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEE
T ss_pred             CCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeE
Confidence            9999999853       2 578999999998876554         34566799999999 8876643 2    357899


Q ss_pred             EEEEcCCceeeEeeccccCCeEEEEEcCCCCEEE
Q 001358          869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILV  902 (1092)
Q Consensus       869 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~  902 (1092)
                      +|||..+++....+.++.      .++|+|++-+
T Consensus       391 ~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         391 VVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             EEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             EEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence            999999999999988774      3467777643

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.6e-26  Score=255.62  Aligned_cols=292  Identities=12%  Similarity=0.088  Sum_probs=212.9

Q ss_pred             eeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEE---
Q 001358          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV---  402 (1092)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l---  402 (1092)
                      .....++|.+.|.++++++  + ++++|+.|++|+|||..+.+.......          ..   ....|...+..+   
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~   69 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDK----------SY---SHFVHKSGLHHVDVL   69 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGG----------EE---EEECCTTCEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccce----------eE---eeeeccCCceEeeeE
Confidence            3466789999999999976  4 588999999999999877654321100          00   022344443332   


Q ss_pred             ---EECC-CCCEEEEEeCCCEEEEEEccCCCCccceEE-------ecccccceeEEEeeCCCC---cEEEEEEeCCCcEE
Q 001358          403 ---VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLE-------IDAHVGNVNDLAFSAPCK---QISVITCGDDKTIK  468 (1092)
Q Consensus       403 ---~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~-------l~~h~~~v~~~~~s~d~~---~l~l~s~~~d~~i~  468 (1092)
                         ..++ ++.++++++.||.|++|++..+........       ...+...+..++|.+++.   ..++++++.|++++
T Consensus        70 ~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~  149 (393)
T d1sq9a_          70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY  149 (393)
T ss_dssp             EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred             eeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE
Confidence               2222 346788999999999999876654332211       113455678888887642   12789999999999


Q ss_pred             EEECCCCc-----------e-------eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE------
Q 001358          469 VWDAVTGS-----------R-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------  524 (1092)
Q Consensus       469 vwd~~~~~-----------~-------~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------  524 (1092)
                      +|++....           .       ......+...+.+++|++  ++ +|++|+.||+|++||+.+.+....      
T Consensus       150 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~  226 (393)
T d1sq9a_         150 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS  226 (393)
T ss_dssp             EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred             EEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccc
Confidence            99974321           0       111123456688888854  54 899999999999999998876553      


Q ss_pred             ecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEe-------------eccccCCceEEEEEcCCCC
Q 001358          525 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-------------GLQLQHNSVSVVHFDTAKD  591 (1092)
Q Consensus       525 ~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~  591 (1092)
                      +..|..+|.+++|+|||++|++++.++. .+.|++||+.+++.+..+.             +|.   ..|.+++|+|+++
T Consensus       227 l~~h~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~---~~V~~l~fspd~~  302 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGE  302 (393)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSSSS
T ss_pred             cccccceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeeccc---CceeeeccCCCCC
Confidence            3457789999999999999999986432 4679999999999888775             454   8899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEeCCCCCC--CCceEEEccCCCEEEEE
Q 001358          592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       592 ~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~~~~l~~~  640 (1092)
                      +|++++.|++|++||+++++++.++..|....  ....++|+|++..++++
T Consensus       303 ~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            99999999999999999999999998774321  12358899999877644

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-25  Score=252.91  Aligned_cols=271  Identities=11%  Similarity=0.107  Sum_probs=201.3

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCc---cceEEecccccceeEEEe------eCCCCcEEEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAF------SAPCKQISVITC  461 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~------s~d~~~l~l~s~  461 (1092)
                      ...+|...|.++++++  ++|++++.|++|+|||..+....   ........|...+..+..      +.... .+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence            4678999999999874  69999999999999998765431   122223344444333222      21111 267899


Q ss_pred             eCCCcEEEEECCCCceeEEE----------ecCCcceEEEeecccCC---ccEEEEEecCCeEEEEEcCCCCc-------
Q 001358          462 GDDKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLGA-------  521 (1092)
Q Consensus       462 ~~d~~i~vwd~~~~~~~~~~----------~~~~~~v~~i~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~-------  521 (1092)
                      +.||.|++|++..+.....+          ..+...+..+++.+..+   +.++++++.||.+++|++.....       
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999997654332111          12344566666655432   57899999999999999853221       


Q ss_pred             -----------eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc---ccCCceEEEEEc
Q 001358          522 -----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFD  587 (1092)
Q Consensus       522 -----------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~  587 (1092)
                                 ......+...+.+++|+|++ ++++++.    ++.|++||+.+++.+..+....   .|...|.+++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEcccc
Confidence                       00112234457899999998 7778765    7789999999999887665422   234899999999


Q ss_pred             CCCCEEEEEeCCC---eEEEEECCCCceEEEEeCC-----------CCCCCCceEEEccCCCEEEEEeCCCeEEEEECCC
Q 001358          588 TAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1092)
Q Consensus       588 ~~~~~l~~~s~dg---~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~  653 (1092)
                      |++++|++|+.|+   .|++||+++++.+..+...           +|...|.+++|+|++++|++++.|++|++||+.+
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            9999999999887   4999999999998887532           3456799999999999999999999999999999


Q ss_pred             CCeeeeccccccccee
Q 001358          654 SNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       654 ~~~~~~~~~~~~~v~~  669 (1092)
                      ++++..+.+|.+.|..
T Consensus       321 g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         321 KERITTLNMHCDDIEI  336 (393)
T ss_dssp             TEEEEEEECCGGGCSS
T ss_pred             CCEEEEECCcCCcccC
Confidence            9999999999988853

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-24  Score=233.79  Aligned_cols=271  Identities=16%  Similarity=0.253  Sum_probs=219.2

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEE
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd  471 (1092)
                      ..+|...|+|++|  ||++||+|+.||+|+|||+.+++.++   ++.+|.+.|++++|  +++  +|++|+.|+.|++|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence            5568889998764  79999999999999999999987655   78899999999987  566  799999999999999


Q ss_pred             CCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEecCCCEEEEEe
Q 001358          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCG  548 (1092)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1092)
                      +..+........+.........    ....++++..++.+++|+........   ....+...+..+.+.+  ..+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s  155 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS  155 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred             cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence            9999888777665555444332    34589999999999999998766433   4555666776666554  5566666


Q ss_pred             cCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceE
Q 001358          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1092)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1092)
                      .    ++.+++||..+++.+..+.++.   ..+..+.++  +..+++++.||.|++||+.+...+.....+..    ...
T Consensus       156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~  222 (293)
T d1p22a2         156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR  222 (293)
T ss_dssp             T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred             C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence            4    6779999999999999998877   777777765  56899999999999999999999888875533    234


Q ss_pred             EEccCCCEEEEEeCCCeEEEEECCC---------CCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcc
Q 001358          629 CFNKNGTLLAVIANENRIKILETPE---------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1092)
Q Consensus       629 ~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1092)
                      .+++++.+|++++.||.|++||+..         ...+..+.+|...|.+++++                        ++
T Consensus       223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~  278 (293)
T d1p22a2         223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF  278 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred             eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence            5678899999999999999999653         24566777888888777664                        56


Q ss_pred             cceeeccccccceec
Q 001358          700 PEISVEAENKSEVEK  714 (1092)
Q Consensus       700 ~l~s~~~d~~i~~w~  714 (1092)
                      ++++++.|++|++||
T Consensus       279 ~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEECCSSSEEEEEC
T ss_pred             EEEEEecCCEEEEeC
Confidence            799999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.4e-26  Score=251.49  Aligned_cols=265  Identities=10%  Similarity=-0.014  Sum_probs=197.9

Q ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       391 ~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      ++.+|++.|++|+||||+++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. ++++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            47789999999999999999999999999999999887655444445579999999999998654 79999999999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecC--CCCceEEEEEecCCCEE
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDA--PGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~--~~~~i~~~~~s~dg~~l  544 (1092)
                      ++..+........+...+....+.. .+...+++++.++++++||++.......    ...  .........+.+++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            9998888777766655554443332 3456899999999999999865443221    111  12244567788899999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCceE------EEEe
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLL------TTID  617 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s~dg~i~iwd~~~~~~~------~~~~  617 (1092)
                      ++++.    ++.|++||+.++...............+.+..+. .++..+++++.||.+.+|+.......      ....
T Consensus       164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             EEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             eeecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            99876    6679999998776554443333223455555554 45678899999999999997653211      1111


Q ss_pred             -------CCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc
Q 001358          618 -------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       618 -------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                             ...+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence                   11233457899999999999999999999999999887665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=6.6e-27  Score=260.08  Aligned_cols=316  Identities=15%  Similarity=0.094  Sum_probs=220.1

Q ss_pred             eEEeecC-CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC
Q 001358          338 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1092)
Q Consensus       338 ~~v~~sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~  416 (1092)
                      ..-.||| ||+ ++|+++. |.|.|||+.++..+.                    + +|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~-~~a~~~~-g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGD-LIAFVSR-GQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGG-CEEEEET-TEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred             hcccccCCCCC-EEEEEEC-CeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence            3467999 999 5677654 899999999887653                    2 59999999999999999998765


Q ss_pred             CC--EEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeec
Q 001358          417 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1092)
Q Consensus       417 d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~  494 (1092)
                      +.  .|++||+++++..    .+..|...|.+++|+|||+  +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence            53  7999999987543    4678999999999999999  89999999999999999999999999999999999995


Q ss_pred             ccCCccEEEEEe----------cCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCC
Q 001358          495 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1092)
Q Consensus       495 ~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1092)
                        +||++|+.+.          .++.+++|++.+.+.. ....+...+..++|+|||++|++++.    ++.+.+||...
T Consensus       137 --pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~  209 (360)
T d1k32a3         137 --DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV  209 (360)
T ss_dssp             --TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred             --cceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence              4677887653          3456999999876543 44456677889999999999999876    45588898765


Q ss_pred             CeEE-------EEEeeccccCCceEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          565 GAIK-------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       565 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      ....       ..+..+.   ..+..+.|++++..+.++..+..     +..++...+.                     
T Consensus       210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  265 (360)
T d1k32a3         210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD---------------------  265 (360)
T ss_dssp             SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBC---------------------
T ss_pred             cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCcCc---------------------
Confidence            5432       1122222   33333445555554443322211     1111111111                     


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       633 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                         .......++.+..+.....                                        ++++.++++++.++.+++
T Consensus       266 ---~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         266 ---YRMIIPLESSILIYSVPVH----------------------------------------GEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             ---EEEEEECSSEEEEEECCCC----------------------------------------CSHHHHHHCCCCCEEEEE
T ss_pred             ---eeEeeecCCCceEEEEEec----------------------------------------CCCeeEEEecCCCCEEEE
Confidence               1111111111111111000                                        234555667777777777


Q ss_pred             eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCC
Q 001358          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~  766 (1092)
                      ||+...+.          ..+.+.|.+++|+|||++|++++.||.|++|++..+
T Consensus       303 ~d~~~~~~----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~  346 (360)
T d1k32a3         303 YDVKTRKV----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  346 (360)
T ss_dssp             EETTTCCE----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             EECCCCeE----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence            77653211          124567899999999999999999999999997654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.5e-25  Score=251.79  Aligned_cols=352  Identities=9%  Similarity=0.050  Sum_probs=259.0

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--EEEEeCC-CCCCCCceEEE
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG-GGLPENPRICF  630 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~--~~~~~~~-~~~~~v~~v~~  630 (1092)
                      ++.|.+||..+++.+..+..+.    .+..++|+|||+++++++.|+++++||+.+++.  ...+... .+...+.+.+|
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            6779999999999999998754    589999999999999999999999999988764  3333322 11122344567


Q ss_pred             ccCCCEE-EEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccc
Q 001358          631 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1092)
Q Consensus       631 s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1092)
                      +|||++| ++++.++.+++||..+++.+.....+...+....+.                                    
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------  160 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------  160 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence            7899986 677789999999999998887766554433222222                                    


Q ss_pred             cceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEe-ecCCeeEEeeecCCccccCcccccccCCccccCCCC
Q 001358          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1092)
Q Consensus       710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1092)
                                             +......+.++++|..++.+ ..++.+.+|+.....                     
T Consensus       161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~---------------------  196 (432)
T d1qksa2         161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN---------------------  196 (432)
T ss_dssp             -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS---------------------
T ss_pred             -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC---------------------
Confidence                                   33455678889999876554 456888888754321                     


Q ss_pred             CceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecC-----CCCCeEEEEEcCCCCCEEEE
Q 001358          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAI  861 (1092)
Q Consensus       789 ~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~las  861 (1092)
                       ......+   .+...+..++|+|||+++++++  ++.+.++|..+++.+..+..     |........+.. .+...++
T Consensus       197 -~~~~~~i---~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~  271 (432)
T d1qksa2         197 -NLKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT  271 (432)
T ss_dssp             -EEEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred             -cceEEEE---cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence             1111111   1445678999999999998887  47899999999888776542     334455555655 5555555


Q ss_pred             Ee-CCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCce
Q 001358          862 GM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1092)
Q Consensus       862 g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1092)
                      .. .++.|.+|+.....    ...|...|....++|++..+++++.+.+.++|+.....           .+..   ...
T Consensus       272 ~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~  333 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISG  333 (432)
T ss_dssp             EBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHT
T ss_pred             cccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eee
Confidence            43 47889999876543    35678889999999999999999999999999876522           1111   133


Q ss_pred             EEEEecCCCEEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceEE
Q 001358          941 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus       941 ~l~~s~dg~~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s-----~Dg~i~vwd~~~~~~~~ 1014 (1092)
                      ++++ ||++.+++ +.|+.+++|++.++..+    ..|...|.+++|||||++|+.+.     .+|.|.|||..++++..
T Consensus       334 sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         334 SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             CEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             EEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence            4555 99999998 67899999998766433    35677899999999999886654     46889999999999987


Q ss_pred             eec
Q 001358         1015 RIL 1017 (1092)
Q Consensus      1015 ~~~ 1017 (1092)
                      .+.
T Consensus       409 ~i~  411 (432)
T d1qksa2         409 VIK  411 (432)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            775

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=2.3e-26  Score=255.65  Aligned_cols=326  Identities=10%  Similarity=-0.005  Sum_probs=229.5

Q ss_pred             EEEec-CCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCc
Q 001358          535 MAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQ  611 (1092)
Q Consensus       535 ~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg--~i~iwd~~~~~  611 (1092)
                      -.||| ||+++++++     .+.|++||..++..++.  +|.   ..|.+++|+|||++|++++.+.  .|++||..+++
T Consensus         8 ~~fSP~dG~~~a~~~-----~g~v~v~d~~~~~~~~~--~~~---~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-----RGQAFIQDVSGTYVLKV--PEP---LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             EEEEECGGGCEEEEE-----TTEEEEECTTSSBEEEC--SCC---SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccccCCCCCEEEEEE-----CCeEEEEECCCCcEEEc--cCC---CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence            56999 999999986     44699999998887654  454   7899999999999998876543  79999999887


Q ss_pred             eEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeec
Q 001358          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                      ......   +...+.+++|+|+|++|++++.++.+++|+..+++....+..                             
T Consensus        78 ~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  125 (360)
T d1k32a3          78 AEKFEE---NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-----------------------------  125 (360)
T ss_dssp             EEECCC---CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-----------------------------
T ss_pred             EEEeeC---CCceEEeeeecccccccceeccccccccccccccceeeeeec-----------------------------
Confidence            664432   334689999999999999999999999999987654433221                             


Q ss_pred             CCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccC
Q 001358          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~  771 (1092)
                                                               +...+.+++|+|+|++++.+..++...            
T Consensus       126 -----------------------------------------~~~~~~~~~~spdg~~la~~~~~~~~~------------  152 (360)
T d1k32a3         126 -----------------------------------------REAMITDFTISDNSRFIAYGFPLKHGE------------  152 (360)
T ss_dssp             -----------------------------------------SSSCCCCEEECTTSCEEEEEEEECSST------------
T ss_pred             -----------------------------------------ccccccchhhccceeeeeeeccccccc------------
Confidence                                                     223344556666666655544331000            


Q ss_pred             cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEE
Q 001358          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA  850 (1092)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~  850 (1092)
                                                                    +.+. ++.+++|++.+++.... ..+...+..++
T Consensus       153 ----------------------------------------------~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~  185 (360)
T d1k32a3         153 ----------------------------------------------TDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPA  185 (360)
T ss_dssp             ----------------------------------------------TCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEE
T ss_pred             ----------------------------------------------eeeccccceeeeccccCceeee-ccccccccccc
Confidence                                                          0011 34688999988766544 44677889999


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEEcCCcee-------eEeeccccCCeEEEEEcCCCCEEEEEeCCCc---EEEEEc--CCC
Q 001358          851 FNPHDNNVIAIGMDDSTILIYNARSSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---IFVWDV--DGW  918 (1092)
Q Consensus       851 ~s~~d~~~lasg~~dg~v~iwd~~~~~~-------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~---i~iwd~--~~~  918 (1092)
                      |+| |+++|++++.++.+.+|+......       ...+..|...+..+.|++++..++++..+..   .++|.+  ..+
T Consensus       186 ~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (360)
T d1k32a3         186 FDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG  264 (360)
T ss_dssp             ECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB
T ss_pred             ccC-CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcC
Confidence            999 899999999999999999765432       3334456666667788888887776654432   233433  332


Q ss_pred             ceeeeeeeecCCCCcCCCCCceEEEEecCCC---EEEE-EeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEE
Q 001358          919 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1092)
Q Consensus       919 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~---~la~-~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1092)
                      ..   ..+....+      .+..+.+.+.+.   +++. +.++.+++||+.+++..     .|.+.|.+++|||||++|+
T Consensus       265 ~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~~v~~~~~SpDG~~l~  330 (360)
T d1k32a3         265 DY---RMIIPLES------SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKNNLTDLRLSADRKTVM  330 (360)
T ss_dssp             CE---EEEEECSS------EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-----EEEEEEEEEEECTTSCEEE
T ss_pred             ce---eEeeecCC------CceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-----EecCCcCEEEECCCCCEEE
Confidence            21   12222222      233444444433   3444 35678999999887643     2455799999999999999


Q ss_pred             EEeCCCcEEEEECCCCceEEeec
Q 001358          995 TSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       995 t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      +++.||.|++||++.++...++.
T Consensus       331 ~~~~Dg~i~v~d~~~~~~~~~~~  353 (360)
T d1k32a3         331 VRKDDGKIYTFPLEKPEDERTVE  353 (360)
T ss_dssp             EEETTSCEEEEESSCTTSCEECC
T ss_pred             EEECCCeEEEEECCCCCcceEEE
Confidence            99999999999999998876654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.3e-24  Score=246.91  Aligned_cols=361  Identities=8%  Similarity=0.054  Sum_probs=242.7

Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~  616 (1092)
                      ++.|.+.++..+.  ..++.|++||..+++.+.++..+.    .+..++|+|||+++++++.|+++++||+.+++.....
T Consensus        26 ~~~d~~~~~~V~~--~~dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          26 NDLDLPNLFSVTL--RDAGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             SCCCGGGEEEEEE--TTTTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCeEEEEEE--cCCCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE
Confidence            4455443332222  237789999999999999998765    5899999999999999999999999999998865443


Q ss_pred             e--CC-CCCCCCceEEEccCCCEEEEE-eCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecC
Q 001358          617 D--AG-GGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1092)
Q Consensus       617 ~--~~-~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1092)
                      .  .. ++...+.+++|+|||++++++ ..++.+++||..++........+...+....+.                   
T Consensus       100 ~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~-------------------  160 (426)
T d1hzua2         100 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH-------------------  160 (426)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE-------------------
T ss_pred             EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec-------------------
Confidence            2  21 121224456778899987555 578999999999998887776655544333333                   


Q ss_pred             CCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeEEeeecCCccccC
Q 001358          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLS  771 (1092)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~~~~~~~~~  771 (1092)
                                                              +......+.+++++..++....+ +.+.+++....     
T Consensus       161 ----------------------------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~-----  195 (426)
T d1hzua2         161 ----------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI-----  195 (426)
T ss_dssp             ----------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSS-----
T ss_pred             ----------------------------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEeccc-----
Confidence                                                    22234455666777666555443 44444432211     


Q ss_pred             cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCC--CCCeE
Q 001358          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP--SPTAT  847 (1092)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~--~~~i~  847 (1092)
                                       ..+.....   ++...+..++|+|++++++++.  ++.+.+++..+++.+......  .....
T Consensus       196 -----------------~~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (426)
T d1hzua2         196 -----------------DNLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR  255 (426)
T ss_dssp             -----------------SSCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSC
T ss_pred             -----------------cceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccc
Confidence                             10111111   2567788999999999999887  477999999999988766432  22223


Q ss_pred             EEEEcCCCCCEE--EEEeCCCeEEEEEcCC-------ceeeEeeccccCCeEEEEEcCCCCEEEE-------EeCCCcEE
Q 001358          848 SLAFNPHDNNVI--AIGMDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIF  911 (1092)
Q Consensus       848 ~l~~s~~d~~~l--asg~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s-------~s~Dg~i~  911 (1092)
                      ...+.......+  +..+.|+.+.+|+...       ++....+.+|...+..++|+||+++|++       ++.|++|+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~  335 (426)
T d1hzua2         256 GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA  335 (426)
T ss_dssp             CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred             eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence            333333122222  2334577888887654       4678889999999999999999999994       55688999


Q ss_pred             EEEcCCCceeeee-eeecCCCCcCCCCCceEEEEecCCCEEEEE------eCCcEEEEEcCCceeeeeeccCCCcCEEEE
Q 001358          912 VWDVDGWGIQTCR-SLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQA  984 (1092)
Q Consensus       912 iwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~la~~------~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l  984 (1092)
                      |||+.+++..... .+.....+......+.+++|||||++++++      .++.|.|||..+++....+ .++.      
T Consensus       336 vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i-~~~~------  408 (426)
T d1hzua2         336 VFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV-KDPR------  408 (426)
T ss_dssp             EEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEE-CCTT------
T ss_pred             EEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEE-CCCC------
Confidence            9999987643321 111111122222468999999999987542      3578999999999987763 3332      


Q ss_pred             EEecCCCEEE
Q 001358          985 TFSCDCRMVF  994 (1092)
Q Consensus       985 ~fs~dg~~l~  994 (1092)
                      .++|+|+|-+
T Consensus       409 ~~tp~Gk~~~  418 (426)
T d1hzua2         409 LITPTGKFNV  418 (426)
T ss_dssp             CCSEEEEEEH
T ss_pred             ccCCCceEeE
Confidence            3568887743

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=5.7e-21  Score=205.53  Aligned_cols=275  Identities=12%  Similarity=0.103  Sum_probs=217.8

Q ss_pred             eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEE-EEeCCCEEEEEEcc
Q 001358          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~  426 (1092)
                      |+.++++.|++|.|||+++++.+.+.+                    ....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            566788899999999999998776422                    235678999999999885 55678999999999


Q ss_pred             CCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEE-EEE
Q 001358          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI  505 (1092)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l-~s~  505 (1092)
                      +++.+.   .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+. ....+++++  ++..+ +++
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--dg~~~~~~~  134 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSP--DGKKLYVTN  134 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEE
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeeccccc-cceEEEeec--CCCeeeeee
Confidence            987655   455555 4688999999986 56677788899999999999988887554 556677754  55554 566


Q ss_pred             ecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEE
Q 001358          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1092)
Q Consensus       506 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1092)
                      ..++.+.+|+..+......+..+. .+..++++|+++.++++..+   ...+.+|+....+........    ..+..++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  206 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVE----AAPSGIA  206 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred             ccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccc---ccccccccccceeeeeccccc----CCcceee
Confidence            678899999999887777666543 56789999999999888652   456888888888777776654    3577899


Q ss_pred             EcCCCCEEEEEe---CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEE-EEEeCCCeEEEEECCCCCeeeecc
Q 001358          586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       586 ~~~~~~~l~~~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ++++++.+++++   .++.|++||..+++.+..+..+.   .+..++|+|||++| ++++.++.|.+||+.+++.+..+.
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999887754   34689999999999998887643   36899999999987 566778999999999998777654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=4.9e-20  Score=198.09  Aligned_cols=268  Identities=14%  Similarity=0.171  Sum_probs=204.4

Q ss_pred             EEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCCeeeecccccccceeeee
Q 001358          594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV  672 (1092)
Q Consensus       594 ~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~  672 (1092)
                      ++++.|++|.+||+.+++.+.++....   .+..++|+|||++|+ +++.++.|++||+.+++.+..+.           
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-----------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----------   71 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-----------
Confidence            456789999999999999999988653   357899999999875 55678999999988664332211           


Q ss_pred             cCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEe
Q 001358          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  752 (1092)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~  752 (1092)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (301)
T d1l0qa2          72 --------------------------------------------------------------------------------   71 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEc
Q 001358          753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV  830 (1092)
Q Consensus       753 ~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~  830 (1092)
                                                                      ....+..+++++++..++++.  ++.+.+|+.
T Consensus        72 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          72 ------------------------------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             ------------------------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ------------------------------------------------ccccccccccccccccccccccccceeeeccc
Confidence                                                            111234667777777666654  477899999


Q ss_pred             CCceeeEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCC-C
Q 001358          831 MTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A  908 (1092)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g  908 (1092)
                      .+++....+.. .....+++|+| ++..+ +++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +
T Consensus       104 ~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             TTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccceeeeeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccc
Confidence            99988888764 45678999999 66655 56667889999999999988888754 558899999999998888765 5


Q ss_pred             cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-Ee---CCcEEEEEcCCceeeeeeccCCCcCEEEE
Q 001358          909 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VH---ETHLAIYEAEELTCLKQWFPISSVPISQA  984 (1092)
Q Consensus       909 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~---d~~v~lwd~~~~~~~~~~~~~h~~~v~~l  984 (1092)
                      .+.+|+....+...  ....   .    ..+..++|++++..+++ +.   ++.|++||+.+++.+..+.  +...+.++
T Consensus       181 ~~~~~~~~~~~~~~--~~~~---~----~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~v  249 (301)
T d1l0qa2         181 SISVIDTVTNSVID--TVKV---E----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--VGPDPAGI  249 (301)
T ss_dssp             EEEEEETTTTEEEE--EEEC---S----SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--CCSSEEEE
T ss_pred             ccccccccceeeee--cccc---c----CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--CCCCEEEE
Confidence            67777777644222  1211   1    13678999999999876 33   3579999999999887643  34578999


Q ss_pred             EEecCCCEE-EEEeCCCcEEEEECCCCceEEeec
Q 001358          985 TFSCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       985 ~fs~dg~~l-~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      +|||||++| ++++.|++|++||+.+++++.++.
T Consensus       250 a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         250 AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999987 577789999999999999998875

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=5.8e-21  Score=209.18  Aligned_cols=309  Identities=9%  Similarity=0.034  Sum_probs=204.8

Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcce
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v  488 (1092)
                      +|+++++.|++|+|||+++++.+..+ ....+...+.+++|+|||++ ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999998766532 23344556889999999994 34677889999999999999998887654322


Q ss_pred             EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC--------CCceeEEEE
Q 001358          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW  560 (1092)
Q Consensus       489 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~~~~~i~iw  560 (1092)
                      ....                                       +..++|+||+++++++....        ..+..+.+|
T Consensus        80 ~~~~---------------------------------------~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (337)
T d1pbyb_          80 RVKS---------------------------------------LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             EEEC---------------------------------------TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             cccc---------------------------------------eeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence            1110                                       11244555555554443210        124568899


Q ss_pred             eCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEE
Q 001358          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1092)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  640 (1092)
                      |..+++....+....    .+..++|+|+++++++++.  .+.+||..+++....+..+..   .....++|++..+...
T Consensus       121 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         121 DAETLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             ETTTTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred             cccCCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence            999999988887644    6778999999999999865  467899999998888876533   2333444544332221


Q ss_pred             eC-CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeecc
Q 001358          641 AN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1092)
Q Consensus       641 ~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1092)
                      .. .+....+....                                         ..+.........++.+.+|+     
T Consensus       192 ~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~-----  225 (337)
T d1pbyb_         192 HESSGVMATPFYTA-----------------------------------------RKDIDPADPTAYRTGLLTMD-----  225 (337)
T ss_dssp             CTTTTEEEEEEEEE-----------------------------------------BTTSCTTSGGGEEEEEEEEE-----
T ss_pred             ccccceeeeeeeee-----------------------------------------eeccceeeecccCccEEEEE-----
Confidence            11 11111111000                                         01111111222222222222     


Q ss_pred             CccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCC
Q 001358          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  799 (1092)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  799 (1092)
                                                                 ..                      ++...... ..  
T Consensus       226 -------------------------------------------~~----------------------~~~~~~~~-~~--  237 (337)
T d1pbyb_         226 -------------------------------------------LE----------------------TGEMAMRE-VR--  237 (337)
T ss_dssp             -------------------------------------------TT----------------------TCCEEEEE-EE--
T ss_pred             -------------------------------------------cC----------------------CCcEEEEE-ec--
Confidence                                                       11                      11101000 00  


Q ss_pred             CCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee
Q 001358          800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1092)
Q Consensus       800 ~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1092)
                      .+...+..+++++++.+++++ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|+.|++||..+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            145567788899999988755 5899999999999998886 566789999999 8999999999999999999999998


Q ss_pred             Eeecc
Q 001358          880 SKLEG  884 (1092)
Q Consensus       880 ~~l~~  884 (1092)
                      .+++-
T Consensus       315 ~~i~~  319 (337)
T d1pbyb_         315 GQVDL  319 (337)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=3e-21  Score=211.53  Aligned_cols=318  Identities=10%  Similarity=0.045  Sum_probs=218.8

Q ss_pred             CEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEE-EEeCCCeEEEEECCCCCeeeeccccccccee
Q 001358          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~  669 (1092)
                      +++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+.....+....  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence            579999999999999999999999998766555678999999999875 55678999999999987776554322111  


Q ss_pred             eeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEE
Q 001358          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1092)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l  749 (1092)
                                                                                     +...+..++|+|+++.+
T Consensus        80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred             ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence                                                                           11223346777777777


Q ss_pred             EEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEE
Q 001358          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI  829 (1092)
Q Consensus       750 ~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd  829 (1092)
                      +++..+.....|.....          ...+.+|+..++.......     ....+..++|+|||+++++++ +.+.+||
T Consensus        97 ~~~~~~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~-~~~~~~d  160 (337)
T d1pbyb_          97 AIYESPVRLELTHFEVQ----------PTRVALYDAETLSRRKAFE-----APRQITMLAWARDGSKLYGLG-RDLHVMD  160 (337)
T ss_dssp             EEEEEEEEECSSCEEEC----------CCEEEEEETTTTEEEEEEE-----CCSSCCCEEECTTSSCEEEES-SSEEEEE
T ss_pred             EEeecCCcceeeecccc----------ccceeeccccCCeEEEecc-----ccCCceEEEEcCCCCEEEEEc-CCcceee
Confidence            77766544444332211          1234456666666444443     345677899999999998875 4578899


Q ss_pred             cCCceeeEEecCCCCCeEEEEEcCCCCCEEE-EEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC
Q 001358          830 VMTFKTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA  908 (1092)
Q Consensus       830 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg  908 (1092)
                      ..+++....+..+.. .....++| ++..+. .+...+....++                   .....+.......+.++
T Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  219 (337)
T d1pbyb_         161 PEAGTLVEDKPIQSW-EAETYAQP-DVLAVWNQHESSGVMATPF-------------------YTARKDIDPADPTAYRT  219 (337)
T ss_dssp             TTTTEEEEEECSTTT-TTTTBCCC-BCCCCCCCCTTTTEEEEEE-------------------EEEBTTSCTTSGGGEEE
T ss_pred             eecCcEEEEeecCCc-cccceecC-Ccceeeccccccceeeeee-------------------eeeeeccceeeecccCc
Confidence            999998888765432 22334455 332222 111222222211                   12223333344445567


Q ss_pred             cEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceeeeeeccCCCcCEEEEEEec
Q 001358          909 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1092)
Q Consensus       909 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1092)
                      .+.+|+..++...........       ..+..++++|++.+++.. ++.+++||+.+++.+....  +...+.+++|||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~  289 (337)
T d1pbyb_         220 GLLTMDLETGEMAMREVRIMD-------VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP--LPHSYYSVNVST  289 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECS-------SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECT
T ss_pred             cEEEEEcCCCcEEEEEecCCC-------cceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc--CCCCEEEEEECC
Confidence            799999988764432222211       247788999999988764 5899999999999988754  456789999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358          989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       989 dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      ||++|++++.|+.|++||+.+++.+.++....
T Consensus       290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g  321 (337)
T d1pbyb_         290 DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG  321 (337)
T ss_dssp             TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEECCC
Confidence            99999999999999999999999998887433

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=6e-21  Score=209.91  Aligned_cols=323  Identities=10%  Similarity=0.013  Sum_probs=214.8

Q ss_pred             EEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEec-ccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEE
Q 001358          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1092)
Q Consensus       402 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~  480 (1092)
                      ++|+++++||++++.+++|.+||+.+++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            5799999999999999999999999987655   444 45567889999999995 457778899999999999998887


Q ss_pred             EecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC--------C
Q 001358          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E  552 (1092)
Q Consensus       481 ~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~  552 (1092)
                      +...........                                      .+..++|+|||+++++.....        .
T Consensus        78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~  119 (346)
T d1jmxb_          78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV  119 (346)
T ss_dssp             EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence            754322111000                                      011245566666555443210        1


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      .+..+.+|+..+++....+..+.. ...+..+.+++++..+++   ++.+.+|+..+++.+..+..+..   ...+.++|
T Consensus       120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  192 (346)
T d1jmxb_         120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP  192 (346)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred             CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence            245688899888876655544331 234556667777765544   25689999999999888876533   45566777


Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccc
Q 001358          633 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1092)
Q Consensus       633 ~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1092)
                      ++..+..... ++.+.+++...                                                          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  214 (346)
T d1jmxb_         193 DVLYFWPHQSPRHEFSMLYTIA----------------------------------------------------------  214 (346)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEE----------------------------------------------------------
T ss_pred             cccEEEEEecCCCceEeeeeee----------------------------------------------------------
Confidence            7665543332 33333332110                                                          


Q ss_pred             eeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCce
Q 001358          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1092)
Q Consensus       712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1092)
                                                   .+.+....+.+...++.+.+|++..                      +...
T Consensus       215 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  243 (346)
T d1jmxb_         215 -----------------------------RFKDDKQDPATADLLYGYLSVDLKT----------------------GKTH  243 (346)
T ss_dssp             -----------------------------EC-------CCCEEEEEEEEEETTT----------------------CCEE
T ss_pred             -----------------------------eeccCceeEeeccCCceEEEEECCC----------------------CceE
Confidence                                         0011111122222233334443322                      1111


Q ss_pred             eeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       792 ~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      .....   .+...+..+.+++++.+++...++.+.+||..+++.+..+. +...+.+++|+| |+++|++++.||.|++|
T Consensus       244 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         244 TQEFA---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEEE---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred             EEEee---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence            11100   25667788899999999998888999999999999988876 455789999999 89999999999999999


Q ss_pred             EcCCceeeEeeccccC
Q 001358          872 NARSSEVISKLEGHSK  887 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~  887 (1092)
                      |..+++.+.++..+.+
T Consensus       319 D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         319 NPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ETTTTEEEEEEECSSS
T ss_pred             ECccCCEEEEEECCCC
Confidence            9999999998885444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=1.7e-21  Score=214.43  Aligned_cols=315  Identities=10%  Similarity=-0.032  Sum_probs=215.6

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCeEEEEECCCCCeeeeccc
Q 001358          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       584 ~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      ++|+++++++++++.+++|.+||+.+++.+.++..+.. ..+..++|+|||+++++ +..++.|.+||+.+++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46889999999999999999999999999998876433 24679999999998755 45789999999998876654432


Q ss_pred             ccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEE
Q 001358          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1092)
Q Consensus       663 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  742 (1092)
                      .....                                                                .+...+..++|
T Consensus        81 ~~~~~----------------------------------------------------------------~~~~~~~~v~~   96 (346)
T d1jmxb_          81 SSVPG----------------------------------------------------------------EVGRSMYSFAI   96 (346)
T ss_dssp             CCSTT----------------------------------------------------------------EEEECSSCEEE
T ss_pred             ccccc----------------------------------------------------------------ccCCceEEEEE
Confidence            11110                                                                01112234566


Q ss_pred             ecCCcEEEEeecC------------CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEE
Q 001358          743 NNGGQAIFALASN------------GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1092)
Q Consensus       743 s~~g~~l~~~~~d------------g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~  810 (1092)
                      +|||+.++++..+            +.+.+|+...                      +.........  .....+..+.+
T Consensus        97 s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~~~~~~~~~--~~~~~~~~~~~  152 (346)
T d1jmxb_          97 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD----------------------GLEAKPVRTF--PMPRQVYLMRA  152 (346)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG----------------------GGGBCCSEEE--ECCSSCCCEEE
T ss_pred             ecCCCEEEEEecCCcceeeeeccCcceEEEEeccc----------------------ceeeeEEEee--eccCceEEEEe
Confidence            7777766655543            3344444332                      2211111000  12334556677


Q ss_pred             ecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEE-EEEeCCCeEEEEEcCCceeeEeeccccCCe
Q 001358          811 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRV  889 (1092)
Q Consensus       811 s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V  889 (1092)
                      ++++++++.  ++.+.+|+..+++.+..+..+ .....++++| ++..+ +.+..++.+.+++..               
T Consensus       153 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------  213 (346)
T d1jmxb_         153 ADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI---------------  213 (346)
T ss_dssp             CTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE---------------
T ss_pred             cCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee---------------
Confidence            788876654  456899999999998888754 3456677888 55444 444445555555421               


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCcee
Q 001358          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC  969 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~  969 (1092)
                        ..+.+....++++..++.+.+|++.++.........    +.   ..+..+.+++++.+++...++.+.+||..+++.
T Consensus       214 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~  284 (346)
T d1jmxb_         214 --ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKL  284 (346)
T ss_dssp             --EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEETTTTEE
T ss_pred             --eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcE
Confidence              122344556667777888999999987644322211    11   257889999999999888788999999999998


Q ss_pred             eeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 001358          970 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      +.....  ...+.+++|||||++|++++.|+.|++||+.+++.+.++.
T Consensus       285 ~~~~~~--~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         285 IKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             EEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEcC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            887543  4568999999999999999999999999999999998887

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=8.4e-18  Score=186.75  Aligned_cols=334  Identities=11%  Similarity=0.023  Sum_probs=223.3

Q ss_pred             ecCCCCcEEEEEECCCCCEEEEEe-----CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEE-----
Q 001358          392 VRDPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-----  461 (1092)
Q Consensus       392 l~~h~~~V~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~-----  461 (1092)
                      ...+..++..++++|||+.+++..     ..+.|.+||..+++.+.   ++..+..+  .++|+|||++  ++++     
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~~--l~va~~~~~   88 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGSE--FALASTSFS   88 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCCE--EEEEeecCC
Confidence            345788999999999999998752     34579999999997665   45455433  7999999994  5444     


Q ss_pred             -----eCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE
Q 001358          462 -----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1092)
Q Consensus       462 -----~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~  536 (1092)
                           ..++.|.+||..+++.+..+..+......+...+                                     ..+.
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~  131 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNA  131 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEE
Confidence                 3467899999999998888776655444332211                                     2367


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceEEE
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~s~dg~i~iwd~~~~~~~~~  615 (1092)
                      |+++++.++....+  .+..+.+|+..+++.....       ....++.++|+++.+ ++.+.|+.+.+|+..++.....
T Consensus       132 ~s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         132 NTPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLL-------SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             EEeCCCcEEEEEEc--CCCceEEeeccCCeEEEEe-------ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            88888887766543  2456888988877654433       335678899998766 5688999999999998887766


Q ss_pred             EeCCC----CCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeec
Q 001358          616 IDAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1092)
Q Consensus       616 ~~~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  691 (1092)
                      .....    .........+++++. ++..+.++.+.+|+...........                              
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~------------------------------  251 (373)
T d2madh_         203 LVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAP------------------------------  251 (373)
T ss_pred             EeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEe------------------------------
Confidence            54321    111233455566554 4455677889999877653221110                              


Q ss_pred             CCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccC
Q 001358          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1092)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~  771 (1092)
                                           |+.                 +........+.|.+...++.+.++...            
T Consensus       252 ---------------------~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~------------  281 (373)
T d2madh_         252 ---------------------IDA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI------------  281 (373)
T ss_pred             ---------------------ecc-----------------ccCcEEeeeeccCcceeeEEecCCCeE------------
Confidence                                 000                 011112222233332222222222111            


Q ss_pred             cccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEE
Q 001358          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA  850 (1092)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~  850 (1092)
                                                          ..+..++..++... ++.+.+||..+++.+..+. +...+..++
T Consensus       282 ------------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a  324 (373)
T d2madh_         282 ------------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             ------------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence                                                11223333444443 6889999999999988876 567789999


Q ss_pred             EcCCCCC--EEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCC
Q 001358          851 FNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  897 (1092)
Q Consensus       851 ~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spd  897 (1092)
                      |+| ||+  ++++++.|+.|++||+.+++.+..+.+|....+.|++.++
T Consensus       325 ~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         325 VAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999 776  4578899999999999999999999988888888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=1.2e-17  Score=185.57  Aligned_cols=306  Identities=12%  Similarity=0.022  Sum_probs=212.7

Q ss_pred             ccCCCCceEEeecCCCceEEEEE----cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECC
Q 001358          331 IEGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1092)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~sp  406 (1092)
                      ..+..++..++++|||++++++.    +..+.|.+||..+++.+..                   +..+..  ..++|||
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~Sp   75 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAH   75 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcC
Confidence            46777999999999999765542    2346799999999998865                   333433  3699999


Q ss_pred             CCCEEEEEe----------CCCEEEEEEccCCCCccceEEecccccc-------eeEEEeeCCCCcEEEEEEeCCCcEEE
Q 001358          407 DGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGN-------VNDLAFSAPCKQISVITCGDDKTIKV  469 (1092)
Q Consensus       407 dg~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~~~-------v~~~~~s~d~~~l~l~s~~~d~~i~v  469 (1092)
                      ||++|++++          .++.|.+||..+++.+.   .+..+...       ...+.|++|++.+++.....++.+.+
T Consensus        76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~  152 (373)
T d2madh_          76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL  152 (373)
T ss_pred             CCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence            999999875          35789999999987655   33333332       24588999999755666667788999


Q ss_pred             EECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEecCCCE
Q 001358          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRR  543 (1092)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~  543 (1092)
                      |+..+++......    ...++.+++.+. ..+++.+.||.+.+|+.............      ........+++++.+
T Consensus       153 ~~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d2madh_         153 VVQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             eeccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence            9988877665443    345566655432 46678899999999999887665543221      112344556666665


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeEEEEEe--ecc-------ccCCceEEEEEcCCCCEEE----------EEeCCCeEEE
Q 001358          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQIL----------AAGDDHVIKI  604 (1092)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~----------~~s~dg~i~i  604 (1092)
                      ++...     ++.+.+|+..++.......  ...       ........+++++++..++          ....++.+.+
T Consensus       228 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         228 VWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             EEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence            55432     4558888877765432221  111       0012234455666655443          4556778999


Q ss_pred             EECCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCCeEEEEECCCCCeeeecccccccceeeeec
Q 001358          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  673 (1092)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~  673 (1092)
                      ||..+++.+..+....   .+..++|+|||+.  +++++.|+.|++||..+++.+..+..+......+++.
T Consensus       303 ~d~~t~~~~~~~~~~~---~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         303 VTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EECCCCcEEEEecCCC---CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            9999999998886543   4789999999984  4678889999999999999999988776666655554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.1e-17  Score=184.38  Aligned_cols=298  Identities=14%  Similarity=0.097  Sum_probs=199.8

Q ss_pred             CceEEeecCCCceEEEEE----cCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          336 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      ++.-.+.+|||++++++.    ..+++|.+||..+++.+.+                   +..+.  +..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g~--~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGGF--LPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEECS--SCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECCC--CCceEEcCCCCEE
Confidence            455567799999765553    2356799999999988764                   22233  3369999999999


Q ss_pred             EEEe----------CCCEEEEEEccCCCCccceEEecccc----cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCce
Q 001358          412 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1092)
Q Consensus       412 as~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~  477 (1092)
                      ++++          .++.|.+||..+++.+........+.    .....++|+||+++++++..+.+..+.+||..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8753          47889999999987665332211221    234568999999965555556778899999999999


Q ss_pred             eEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------CCCCceEEEEEecCCCEEEEEecCC
Q 001358          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       478 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      +..+..+.......    . .....++.+.||...++............      .+...+....+++++..++.++.  
T Consensus       142 ~~~~~~~~~~~~~~----~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  214 (355)
T d2bbkh_         142 KRMLDVPDCYHIFP----T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--  214 (355)
T ss_dssp             EEEEECCSEEEEEE----E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred             eeEEecCCcceEee----c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence            88887554322111    1 11234455566665555544433322211      12223455678888888887764  


Q ss_pred             CCceeEEEEeCCCCeEEE--EEeecc-------ccCCceEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCce
Q 001358          552 EGESFLVEWNESEGAIKR--TYQGLQ-------LQHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL  612 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~--~~~~~~-------~~~~~v~~~~~~~~~~~l~~~s~d----------g~i~iwd~~~~~~  612 (1092)
                        ++.+++|+...++...  ....+.       ........+++++++..++....+          ..|.+||..+++.
T Consensus       215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence              5679999998876432  222111       001223457899999988876533          4699999999999


Q ss_pred             EEEEeCCCCCCCCceEEEccCCC--EEEEEeCCCeEEEEECCCCCeeeeccccccc
Q 001358          613 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSDN  666 (1092)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  666 (1092)
                      +..+....   .+.+++|+|||+  ++++++.|+.|++||..+++.+..+..+...
T Consensus       293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~  345 (355)
T d2bbkh_         293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG  345 (355)
T ss_dssp             EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred             EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence            88887543   368999999998  4556677999999999999998888755443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=9.6e-18  Score=184.82  Aligned_cols=329  Identities=13%  Similarity=0.058  Sum_probs=200.0

Q ss_pred             EEEEECCCCCEEEEEe-----CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEE--------EeCCCc
Q 001358          400 NRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--------CGDDKT  466 (1092)
Q Consensus       400 ~~l~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s--------~~~d~~  466 (1092)
                      .-.+.+|||+.+++..     .+..|.+||..+++.+.   ++..+  .+..++|||||+++++++        ++.|+.
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~   79 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDY   79 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCE
Confidence            3346789999998763     45679999999997665   34333  344799999999644432        345788


Q ss_pred             EEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEE
Q 001358          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1092)
Q Consensus       467 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1092)
                      |++||..+++.+..+..+......+..                                     ....++|+|+|++++.
T Consensus        80 v~v~D~~t~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~s~dg~~~~v  122 (355)
T d2bbkh_          80 VEVFDPVTLLPTADIELPDAPRFLVGT-------------------------------------YPWMTSLTPDGKTLLF  122 (355)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSC-------------------------------------CGGGEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEEEecCCcceeecCC-------------------------------------CCceEEEecCCCeeEE
Confidence            999999999988877655433322110                                     1123678999998887


Q ss_pred             EecCCCCceeEEEEeCCCCeEEEEEeecccc----CCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCC
Q 001358          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGG  621 (1092)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~  621 (1092)
                      +...  .+..+.+|+..+++.+..+......    ......+.+++++..++.. ..++.+.+++......       ..
T Consensus       123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~  193 (355)
T d2bbkh_         123 YQFS--PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------ED  193 (355)
T ss_dssp             EECS--SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------TT
T ss_pred             ecCC--CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------ee
Confidence            7543  3567899999999988877654300    0112233444444444332 2223333333322211       12


Q ss_pred             CCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecc--cccccceeeeecCCcccccccccCCceeecCCCCCCcc
Q 001358          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG--VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1092)
Q Consensus       622 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1092)
                      ...+....+.+++..++.++.++.+++|+...+.......  .+........+                           
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  246 (355)
T d2bbkh_         194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW---------------------------  246 (355)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE---------------------------
T ss_pred             cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee---------------------------
Confidence            2235567888889999999999999999988653221100  00000000000                           


Q ss_pred             cceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccC
Q 001358          700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP  779 (1092)
Q Consensus       700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~  779 (1092)
                                                       .......+++++++..++....++...                    
T Consensus       247 ---------------------------------~p~~~~~~~~~~d~~~~~~~~~~~~~~--------------------  273 (355)
T d2bbkh_         247 ---------------------------------RPGGWQQVAYHRALDRIYLLVDQRDEW--------------------  273 (355)
T ss_dssp             ---------------------------------EECSSSCEEEETTTTEEEEEEEECCTT--------------------
T ss_pred             ---------------------------------eccceEEEEEeCCCCeEEEEeccCCce--------------------
Confidence                                             000111234444444433332221000                    


Q ss_pred             CccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--
Q 001358          780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--  857 (1092)
Q Consensus       780 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--  857 (1092)
                                                           ......+.|.+||..+++.+..+. +...+.+++|+| |++  
T Consensus       274 -------------------------------------~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~  314 (355)
T d2bbkh_         274 -------------------------------------RHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPL  314 (355)
T ss_dssp             -------------------------------------CTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCE
T ss_pred             -------------------------------------eecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeE
Confidence                                                 000012468999999999888776 345688999999 776  


Q ss_pred             EEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCC
Q 001358          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL  898 (1092)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg  898 (1092)
                      +++++..|+.|++||+.+++.+.++.++......+.+.++|
T Consensus       315 l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~  355 (355)
T d2bbkh_         315 LYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG  355 (355)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred             EEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence            45677889999999999999999998776666666665543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.2e-16  Score=169.57  Aligned_cols=281  Identities=15%  Similarity=0.154  Sum_probs=187.5

Q ss_pred             eEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEcc
Q 001358          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH  426 (1092)
Q Consensus       348 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~  426 (1092)
                      .++++++.|++|+||++++...+....                 ...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence            356888899999999998765443211                 234788999999999999996665 58999999998


Q ss_pred             CCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-CCCcEEEEECCCCceeEE--EecCCcceEEEeecccCCccEEE
Q 001358          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIF  503 (1092)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~~l~  503 (1092)
                      .+...........+...+..++|+|||+  +|++++ .++.|.+|+.........  ...+...+.++.+++  ++++++
T Consensus        68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~  143 (333)
T d1ri6a_          68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW  143 (333)
T ss_dssp             TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred             CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence            7654433222233455678899999999  555555 577899999877655433  345666777777754  666666


Q ss_pred             EEe-cCCeEEEEEcCCCCceEE------ecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCC--CCeEE--EEEe
Q 001358          504 SIS-VDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIK--RTYQ  572 (1092)
Q Consensus       504 s~~-~dg~i~vwd~~~~~~~~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~--~~~~  572 (1092)
                      +++ .+..|.+|+.........      ..........++|++++..++.....   .....+|+..  .....  ....
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~  220 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLD  220 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeee
Confidence            665 456799999877554331      22234466889999999998876542   3345555543  22221  1221


Q ss_pred             e---ccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEe-CCCCCCCCceEEEccCCCEEEEEeC-CCeE
Q 001358          573 G---LQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIAN-ENRI  646 (1092)
Q Consensus       573 ~---~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i  646 (1092)
                      .   ..........+++++++++++.. ..++.+.+|++.......... .......+..++|+|||++|++++. ++.|
T Consensus       221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v  300 (333)
T d1ri6a_         221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI  300 (333)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred             eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence            1   11122456778999999987765 567899999887543322221 1111234678999999999887754 6899


Q ss_pred             EEEECC
Q 001358          647 KILETP  652 (1092)
Q Consensus       647 ~iw~~~  652 (1092)
                      .+|++.
T Consensus       301 ~v~~id  306 (333)
T d1ri6a_         301 SVYEIV  306 (333)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.2e-16  Score=169.57  Aligned_cols=151  Identities=13%  Similarity=0.124  Sum_probs=112.0

Q ss_pred             EEEEEecCCeEEEEEcCCCCceE--EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccC
Q 001358          501 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  578 (1092)
Q Consensus       501 ~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  578 (1092)
                      .+++++.|++|++|+++......  ....+...+..++|+|||++|++++.   .++.|++|++........+..+....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence            45788899999999998765433  22346678899999999999977663   26679999987765544444433234


Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC-CCeEEEEECCCC
Q 001358          579 NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPES  654 (1092)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~  654 (1092)
                      ..+..++|+|||+++++++ .++.+.+|+..............+...+.++.++|+++++++++. +..+.+|+....
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            5677899999999999987 477899999887766655544344456788999999998888775 456788876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=1.4e-14  Score=159.78  Aligned_cols=292  Identities=11%  Similarity=0.004  Sum_probs=194.4

Q ss_pred             cCCCCceEEeecCCCceEEE--EEcCcCc--EEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCC
Q 001358          332 EGSSSPMSMDFHPVQHTLLL--VGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1092)
Q Consensus       332 ~h~~~V~~v~~spdg~~lla--sg~~d~~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spd  407 (1092)
                      .+.+....++.++|++...+  ....+++  |.+||..+++.+..                   ..++...  .++|+||
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spD   75 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHS   75 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTT
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCC
Confidence            34456677788889885333  3444554  66779999987764                   3334443  5899999


Q ss_pred             CCEEEEEe----------CCCEEEEEEccCCCCccceEEecccc-------cceeEEEeeCCCCcEEEEEEeCCCcEEEE
Q 001358          408 GSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1092)
Q Consensus       408 g~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~-------~~v~~~~~s~d~~~l~l~s~~~d~~i~vw  470 (1092)
                      |++|++.+          .|+.|.+||..+++.+..   +..+.       .....++|+|||++ ++++...++.+.+|
T Consensus        76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~  151 (368)
T d1mdah_          76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGL  151 (368)
T ss_dssp             SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEE
T ss_pred             CCEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEE
Confidence            99999865          367799999999876553   32221       12346899999996 33444568999999


Q ss_pred             ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe------cCCCCceEEEEEecCCCEE
Q 001358          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------DAPGLGCTRMAYSANGRRL  544 (1092)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------~~~~~~i~~~~~s~dg~~l  544 (1092)
                      |+.+++.+..+..+......    +. ....++..+.||.+.+|++.........      ..+...+....+.+++..+
T Consensus       152 d~~~~~~~~~~~~~~~~~~~----~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         152 SVPGASDDQLTKSASCFHIH----PG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             EETTTEEEEEEECSSCCCCE----EE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             ECCCCcEeEEeeccCcceEc----cC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            99999999888766544221    12 2246777888999999988766544322      1222344567777887766


Q ss_pred             EEEecCCCCceeEEEEeCCCCeEEEEEe--ecc-------ccCCceEEEEEcCCCCEEEEEeCC---------CeEEEEE
Q 001358          545 FSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWD  606 (1092)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~~~s~d---------g~i~iwd  606 (1092)
                      ...+      +.+++++...+.......  ...       ........+++++++..++....+         ..|.+||
T Consensus       227 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         227 WAVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             ECBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             EecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            6542      235566655544332211  110       001123357789998887765322         3589999


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCE--EEEEeCCCeEEEEECCCCCeeeeccc
Q 001358          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGV  662 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1092)
                      ..+++.+..+....   .+..++|+|||+.  ++++..++.|++||..+++.+..+..
T Consensus       301 ~~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         301 ASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99999888776442   3688999999973  45666789999999999988887764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=2.4e-13  Score=155.32  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=139.0

Q ss_pred             EEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC--
Q 001358          339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS--  416 (1092)
Q Consensus       339 ~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~--  416 (1092)
                      .+.|.+|+. ++..  .|+.+.+||+.+++....              +....+..|...|.++.|||||++||+++.  
T Consensus        21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            578999998 4553  578999999999986532              111225667789999999999999998853  


Q ss_pred             -------CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC----
Q 001358          417 -------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG----  485 (1092)
Q Consensus       417 -------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----  485 (1092)
                             ++.+.|||+++++..    .+..|...+..+.|||||+  .++.. .++.+.+|+..+++..+....+.    
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence                   467899999998643    4678889999999999999  46654 47789999999887765433221    


Q ss_pred             --------------cceEEEeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecC
Q 001358          486 --------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1092)
Q Consensus       486 --------------~~v~~i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1092)
                                    +....+.|  ++||+.|+....|.+ +..|.+......   .........+.+...+..       
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~-------  224 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV-------  224 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred             cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence                          12233445  568888988876544 444433211000   000111222222222211       


Q ss_pred             CCCceeEEEEeCCCCeEEEEEeecc--------ccCCceEEEEEcCCCCEEEE
Q 001358          551 KEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILA  595 (1092)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~  595 (1092)
                       .....+.+|++.++........+.        .....+..+.|.+++..++.
T Consensus       225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence             124457888887766543322211        11234567888888765554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=1.4e-13  Score=151.67  Aligned_cols=313  Identities=13%  Similarity=-0.005  Sum_probs=192.2

Q ss_pred             EEEEEecCCCEEE-EEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----------CCCe
Q 001358          533 TRMAYSANGRRLF-SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHV  601 (1092)
Q Consensus       533 ~~~~~s~dg~~l~-~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----------~dg~  601 (1092)
                      ..++..++++... +......+...+++||..+++.+..+.++.   ..  .++|+|||+.+++.+          .|+.
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---LS--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---TC--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---CC--cceECCCCCEEEEEcccCccccccccCCe
Confidence            3445677888653 323344556779999999999999888765   33  588999999998754          3678


Q ss_pred             EEEEECCCCceEEEEeCCCCC-----CCCceEEEccCCCEEEEEe-CCCeEEEEECCCCCeeeecccccccceeeeecCC
Q 001358          602 IKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1092)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~  675 (1092)
                      |++||..+++.+..+..+...     .....++|+|||++++++. .++.+.+||+.+++....+..+....    +.+.
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~  173 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPG  173 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccC
Confidence            999999999999888654321     1245799999999998876 57999999999987777655433221    1110


Q ss_pred             cccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC
Q 001358          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1092)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d  755 (1092)
                      +       ....+.+    ++||+.++....++....|...          ......+...+....+.+++..+..  .+
T Consensus       174 ~-------~~~~v~~----~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~--~~  230 (368)
T d1mdah_         174 A-------AATHYLG----SCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWA--VA  230 (368)
T ss_dssp             E-------TTEEECC----CCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEEC--BS
T ss_pred             C-------CceEEEE----cCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEe--cC
Confidence            0       0001111    3444444444333333332211          1111123334445566777654433  34


Q ss_pred             CeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--C--------CeE
Q 001358          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GVI  825 (1092)
Q Consensus       756 g~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--d--------g~i  825 (1092)
                      +.+.++++....            +.+++...+.........  ........+++++++..+.+..  +        ..|
T Consensus       231 ~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v  296 (368)
T d1mdah_         231 SSILQGDIPAAG------------ATMKAAIDGNESGRKADN--FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             SCCEEEECCSSC------------CEEECCCCSSCTHHHHTT--EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             CCEEEEeecCCc------------eEEEeecccccceeeeee--ecCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence            555665554332            122222111100000000  0112234578999998876653  1        248


Q ss_pred             EEEEcCCceeeEEecCCCCCeEEEEEcCCCCC--EEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEE
Q 001358          826 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF  894 (1092)
Q Consensus       826 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~  894 (1092)
                      .+||..+++.+..+. +...+.+++|+| |++  +++++..|+.|++||..+++.+..+..... -..|++
T Consensus       297 ~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~  364 (368)
T d1mdah_         297 SSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV  364 (368)
T ss_dssp             EEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred             EEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence            999999999888775 345688999999 665  356777899999999999999999875433 334433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=6.5e-14  Score=160.09  Aligned_cols=377  Identities=11%  Similarity=0.023  Sum_probs=214.1

Q ss_pred             EEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccc--cCCceEEEEEcCCCCEEEEEeC---------CCeE
Q 001358          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD---------DHVI  602 (1092)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~s~---------dg~i  602 (1092)
                      .+.|.+|++++...      ++.+++||..+++....+..+..  +...|.++.|+||+++|+.++.         ++.+
T Consensus        21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence            46788999877642      34599999999998776665532  2357899999999999998753         5678


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCccccccc
Q 001358          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  682 (1092)
                      .+||+.+++... +..+  ...+..+.|||||+.+|... ++.+++|+..++............+               
T Consensus        95 ~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~---------------  155 (470)
T d2bgra1          95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI---------------  155 (470)
T ss_dssp             EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT---------------
T ss_pred             EEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCc---------------
Confidence            999999887543 3332  34578999999999999865 5789999998876554433221111               


Q ss_pred             ccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCC-eeEEe
Q 001358          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMW  761 (1092)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-~i~lw  761 (1092)
                                        ...+..|     |...              ....+....+.|||||+.++....|. .+..|
T Consensus       156 ------------------~~~g~~d-----~~~~--------------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         156 ------------------IYNGITD-----WVYE--------------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             ------------------EEESBCC-----HHHH--------------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ------------------ccccccc-----eeee--------------eeecCCccccEECCCCCccceeEecCCcCceE
Confidence                              0011000     0000              00122334578999999999887663 35555


Q ss_pred             eecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEe--
Q 001358          762 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--  839 (1092)
Q Consensus       762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~--  839 (1092)
                      .+.....                 ..            ........+.+...+...   .+..+.+|++.++......  
T Consensus       199 ~~~~~~~-----------------~~------------~~~~~~~~~~~~~~g~~~---~~~~~~v~~~~~~~~~~~~~~  246 (470)
T d2bgra1         199 EYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATS  246 (470)
T ss_dssp             EEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEEGGGCCSSSCCCE
T ss_pred             EEEeecc-----------------CC------------CCCCeeeeeccccccccC---CcceEEEEECCCcceeeeccc
Confidence            4432100                 00            011111112221111100   1235778888766543221  


Q ss_pred             ---------cCCCCCeEEEEEcCCCCCEEEEE-eCCC---e--EEEEEcCCceeeEeec-------------cccCCeEE
Q 001358          840 ---------MPPSPTATSLAFNPHDNNVIAIG-MDDS---T--ILIYNARSSEVISKLE-------------GHSKRVTG  891 (1092)
Q Consensus       840 ---------~~~~~~i~~l~~s~~d~~~lasg-~~dg---~--v~iwd~~~~~~~~~l~-------------~h~~~V~~  891 (1092)
                               ......+..+.|.+ ++.+++.. ...+   .  +..+|..++.......             .|....  
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~--  323 (470)
T d2bgra1         247 IQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE--  323 (470)
T ss_dssp             EEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC--
T ss_pred             cccCCccccCCCCceEEEEEEcC-CCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCC--
Confidence                     12223467788888 66655543 2222   2  3344555555432211             122222  


Q ss_pred             EEEcCCC--CEEEEEeCCCcEEEE--EcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-E-e-C---CcEEE
Q 001358          892 LVFSDAL--NILVSSGGDAQIFVW--DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-H-E---THLAI  961 (1092)
Q Consensus       892 l~~spdg--~~l~s~s~Dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~-~-d---~~v~l  961 (1092)
                      ..|++++  .+++....||...||  +..++.     ......+..    .|..+ +++|++.+.. + . +   ..-.|
T Consensus       324 ~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-----~~~lt~g~~----~v~~~-~~~d~~~iyf~a~~~~~~p~~~~l  393 (470)
T d2bgra1         324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-----CTFITKGTW----EVIGI-EALTSDYLYYISNEYKGMPGGRNL  393 (470)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCSC-----CEESCCSSS----CEEEE-EEECSSEEEEEESCGGGCTTCBEE
T ss_pred             ceeeecCCCcEEEEeccCcCceeEEEeccCCc-----eeeeccCCe----eEEEE-EEECCCEEEEEEecCCCCcceEEE
Confidence            3344443  445667778766555  444433     222223333    35655 5556665543 3 2 2   12234


Q ss_pred             E--EcCCceeee---eeccCCCcCEEEEEEecCCCEEE-EEeC--CCcEEEEECCCCceEEeec
Q 001358          962 Y--EAEELTCLK---QWFPISSVPISQATFSCDCRMVF-TSFV--DGTLSIHEASNLEVQCRIL 1017 (1092)
Q Consensus       962 w--d~~~~~~~~---~~~~~h~~~v~~l~fs~dg~~l~-t~s~--Dg~i~vwd~~~~~~~~~~~ 1017 (1092)
                      |  ++..+....   ....+|...+.+++|||||++++ +++.  .-.+.+|+..+|+.+..+.
T Consensus       394 y~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         394 YKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             EEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            4  444333222   22446788999999999999977 3333  3458999999999987775

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=4e-15  Score=161.16  Aligned_cols=329  Identities=9%  Similarity=-0.000  Sum_probs=198.7

Q ss_pred             cEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEE
Q 001358          455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1092)
Q Consensus       455 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~  534 (1092)
                      ++.++|++.+|.|+|||+.+++.++++..         |++.+.  . ..|..+.+.+++.  ..........|......
T Consensus        11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV---------fspd~~--~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~   76 (441)
T d1qnia2          11 YYGFWSGGHQGEVRVLGVPSMRELMRIPV---------FNVDSA--T-GWGITNESKEILG--GDQQYLNGDCHHPHISM   76 (441)
T ss_dssp             EEEEEECBTTCCEEEEEETTTEEEEEECS---------SSBCTT--T-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEE
T ss_pred             EEEEEeCCCCCcEEEEeCCCCcEEEEEEe---------EcCCCC--E-EEEECCccceEEe--cccccccCcccCCCcce
Confidence            34688999999999999999999988852         333221  1 1111111111110  00111111223333444


Q ss_pred             EEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCE--EEEEeCCC------------
Q 001358          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDH------------  600 (1092)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~s~dg------------  600 (1092)
                      ..++|||++|++...   .+.+|.++|+.+++..+.+.-..  ...+..++|+|+++.  ++..+++.            
T Consensus        77 t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          77 TDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             ETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             ecccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            556899999988763   36689999999999888776433  367899999999884  44444332            


Q ss_pred             -----eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCe-EEEEECCCCCeeeecccccccceeeeecC
Q 001358          601 -----VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNP  674 (1092)
Q Consensus       601 -----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~v~~~~~~~  674 (1092)
                           .+..+|..+.+....+...+.   ...++|+|+|+++++.+.+.. +..++..+.....                
T Consensus       152 ~~~~~~~~~iD~~t~~v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d----------------  212 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRD----------------  212 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBC----------------
T ss_pred             ccccceEEeecCccceeeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCcceEE----------------
Confidence                 245688888888888776543   678999999999998876532 1111111111000                


Q ss_pred             CcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec
Q 001358          675 ISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  754 (1092)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~  754 (1092)
                                                        .+.+.+                     .-..++++++|+++.. +.
T Consensus       213 ----------------------------------~i~v~n---------------------~p~~~~~~~dGk~~~v-~~  236 (441)
T d1qnia2         213 ----------------------------------WVVVFN---------------------VERIAAAVKAGNFKTI-GD  236 (441)
T ss_dssp             ----------------------------------EEEEEE---------------------HHHHHHHHHTTCCBCC-TT
T ss_pred             ----------------------------------EEEeCC---------------------ccceEEEecCCCEEEe-CC
Confidence                                              000000                     0011234556654332 23


Q ss_pred             CCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCC
Q 001358          755 NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT  832 (1092)
Q Consensus       755 dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~  832 (1092)
                      ++.+.++....                      ...+.....     ......+.++|||+++++++  ++++.+||+.+
T Consensus       237 ~~v~vvd~~~~----------------------~~v~~~IPv-----gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         237 SKVPVVDGRGE----------------------SEFTRYIPV-----PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCCCEEECSSS----------------------CSSEEEECC-----BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCcEEEEcccC----------------------CceEEEEeC-----CCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            34444433211                      111222211     22345789999999998876  69999999875


Q ss_pred             ceee--------EEecC---CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc----------eeeEee-----cccc
Q 001358          833 FKTI--------LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKL-----EGHS  886 (1092)
Q Consensus       833 ~~~~--------~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----------~~~~~l-----~~h~  886 (1092)
                      .+..        ..+.+   ..-.....+|++ ++..+.+...|..|..|++...          ..+..+     .||.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~  368 (441)
T d1qnia2         290 LDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN  368 (441)
T ss_dssp             HHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred             hhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence            3311        11111   112345568999 8888899999999999998521          233444     5788


Q ss_pred             CCeEEEEEcCCCCEEEEEe
Q 001358          887 KRVTGLVFSDALNILVSSG  905 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s  905 (1092)
                      ..+.+.+++|||++|++++
T Consensus       369 ~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         369 HASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             EETTTTSTTCCCCEEEEEE
T ss_pred             ccccccccCCCCcEEEecC
Confidence            8888889999999999994

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=2e-15  Score=163.59  Aligned_cols=360  Identities=10%  Similarity=0.006  Sum_probs=219.0

Q ss_pred             CCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Q 001358          345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA  424 (1092)
Q Consensus       345 dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~i~iwd  424 (1092)
                      |+-+.+++|+.+|.|+||++.+++.++.                   +     +    .|+|++... .|..+.+.+++.
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~-------------------I-----p----Vfspd~~~g-~g~~~es~~vl~   59 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMR-------------------I-----P----VFNVDSATG-WGITNESKEILG   59 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEE-------------------E-----C----SSSBCTTTC-TTTSHHHHHHHC
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEE-------------------E-----E----eEcCCCCEE-EEECCccceEEe
Confidence            4446688899999999999999988764                   1     1    278887642 222222222221


Q ss_pred             ccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcceEEEeecccCCccEEE
Q 001358          425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIF  503 (1092)
Q Consensus       425 ~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~  503 (1092)
                        ++....   .-..|.-......++|||++ ++++...+++|.++|++++++...+.- +...+..++|++.++-.+++
T Consensus        60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred             --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence              111111   12235555667778999995 456677889999999999998887753 56678888997655544666


Q ss_pred             EEecCC-----------------eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001358          504 SISVDG-----------------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1092)
Q Consensus       504 s~~~dg-----------------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1092)
                      ..+.+.                 .+..+|..+.+........ .....+.++|||+++++.+.+.+   .+..++..+..
T Consensus       134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse---~~~~id~~t~~  209 (441)
T d1qnia2         134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSE---RAVDLAGTMRN  209 (441)
T ss_dssp             EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTT---CCSSHHHHTCS
T ss_pred             eccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCC---ceEEEeccCcc
Confidence            555442                 2355777776665544433 34677999999999988765322   13334444444


Q ss_pred             EEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEE-EeCCCe
Q 001358          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENR  645 (1092)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~  645 (1092)
                      ....+....    ....+.+.|+|+++.. +.++.+.+++......+..+.....   ...+.++|||+++++ +..+++
T Consensus       210 ~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~t  281 (441)
T d1qnia2         210 DRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPT  281 (441)
T ss_dssp             SBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSB
T ss_pred             eEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCc
Confidence            333332222    1223456788887655 4467888888888788888876533   578999999998766 456899


Q ss_pred             EEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccceeceeeccCcccee
Q 001358          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1092)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1092)
                      +.+||+....  ..+.+......++...+.                                                  
T Consensus       282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~~--------------------------------------------------  309 (441)
T d1qnia2         282 VSVIAIDKLD--DLFEDKIELRDTIVAEPE--------------------------------------------------  309 (441)
T ss_dssp             EEEEEGGGHH--HHTTTSSCGGGGEEECCB--------------------------------------------------
T ss_pred             EEEEEeehhh--hHhhccCCcceEEEeecc--------------------------------------------------
Confidence            9999987421  111111111111111100                                                  


Q ss_pred             cccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCe
Q 001358          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1092)
Q Consensus       726 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v  805 (1092)
                             ..-.....+|.++|..+.+..-|..+..|++........+..    .-.+|+..     -. .. ..+|...+
T Consensus       310 -------~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~----~~~v~~~~-----~v-~y-~~GH~~~~  371 (441)
T d1qnia2         310 -------LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR----VNYIRQKL-----DV-QY-QPGHNHAS  371 (441)
T ss_dssp             -------CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCC----CCCEEEEE-----EC-SS-CEEEEEET
T ss_pred             -------cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCC----CceeEecc-----cc-cc-CCCCCccc
Confidence                   011234457899998888888899999999753211111110    11111100     00 00 11477777


Q ss_pred             eEEEEecCCCEEEEEe
Q 001358          806 PCFALSKNDAYLFSAS  821 (1092)
Q Consensus       806 ~~~~~s~dg~~l~~~s  821 (1092)
                      .+.+++|||++|++++
T Consensus       372 ~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         372 LTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTSTTCCCCEEEEEE
T ss_pred             cccccCCCCcEEEecC
Confidence            7788999999999995

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=1.1e-08  Score=110.81  Aligned_cols=161  Identities=12%  Similarity=0.118  Sum_probs=103.3

Q ss_pred             CCeeEEEEecCCCEEEEEe--CCeEEEEEcCC-ceee--EEe--cCCCCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcC
Q 001358          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNAR  874 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~  874 (1092)
                      ..+.+++|+|||+++++++  .+.|.+|+... +...  ...  .......+.++|+| +++++++. ..+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            3467899999999999887  36788887653 2221  222  22346789999999 77777554 467899999997


Q ss_pred             CceeeEeec-------------------cccCCeEEEEEcCCCCEEEEEeC-C-----CcEEEEEcCCCc-eeeeeeeec
Q 001358          875 SSEVISKLE-------------------GHSKRVTGLVFSDALNILVSSGG-D-----AQIFVWDVDGWG-IQTCRSLQT  928 (1092)
Q Consensus       875 ~~~~~~~l~-------------------~h~~~V~~l~~spdg~~l~s~s~-D-----g~i~iwd~~~~~-~~~~~~~~~  928 (1092)
                      .++......                   .+......+.++|||++|+++.+ +     +.|..|++.... ......+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            654321110                   12223567899999999887643 2     237777776532 222112221


Q ss_pred             CCCCcCCCCCceEEEEec-CCCEEEEE--eCCcEEEEEcCCc
Q 001358          929 PDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEEL  967 (1092)
Q Consensus       929 ~~~~~~~~~~v~~l~~s~-dg~~la~~--~d~~v~lwd~~~~  967 (1092)
                      ....   ......++|+| +|++|+++  .++.|.+|++...
T Consensus       304 ~~~~---G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTS---GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSC---CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcC---CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1111   12456799998 89988885  5688999987543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.23  E-value=3.1e-09  Score=115.12  Aligned_cols=254  Identities=10%  Similarity=0.106  Sum_probs=151.8

Q ss_pred             CCCCeeEEEEecCCCEEEEEeCCeEEEEEcCC-ceeeEEe-cCCCCCeEEEEEcCCCCCEE--EEEe-CCCeEEEEEcCC
Q 001358          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTI-MPPSPTATSLAFNPHDNNVI--AIGM-DDSTILIYNARS  875 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~-~~~~~~~-~~~~~~i~~l~~s~~d~~~l--asg~-~dg~v~iwd~~~  875 (1092)
                      ....+..++|++++++|.++..+.+..|.+.. +...... .........+++++ +++.+  +++. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            34456779999999999988888888887653 2222221 12234456778888 67643  3322 235555554422


Q ss_pred             c-------------ee---eEe-eccccCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcCCC-ceeeeeeeecCCCCcCCC
Q 001358          876 S-------------EV---ISK-LEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW-GIQTCRSLQTPDGVMTLA  936 (1092)
Q Consensus       876 ~-------------~~---~~~-l~~h~~~V~~l~~spdg~~l~s~s~-Dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~  936 (1092)
                      .             +.   ... -......+.+++|+|||+++++++. ...|.+|++... .............    .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence            1             10   000 1112234789999999999888764 346888876543 2222222222211    1


Q ss_pred             CCceEEEEecCCCEEEEE--eCCcEEEEEcCCceeeeeec------------------cCCCcCEEEEEEecCCCEEEEE
Q 001358          937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------------PISSVPISQATFSCDCRMVFTS  996 (1092)
Q Consensus       937 ~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~~~~~~------------------~~h~~~v~~l~fs~dg~~l~t~  996 (1092)
                      .....++|+|||+++.+.  .+++|.+|++..+.......                  ..+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            357899999999998875  45789999987654221100                  0112345678999999999877


Q ss_pred             eC------CCcEEEEECCCCceEEeec-cccccCCCCccCcccceEEEECCCCCCEEEEE-eCCCcEEEEecCCCC
Q 001358          997 FV------DGTLSIHEASNLEVQCRIL-STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPG 1064 (1092)
Q Consensus       997 s~------Dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~-~~dg~v~~w~~~~~~ 1064 (1092)
                      ..      .+.|..|++.....+.+.. .......+     -.+..++++|.++++|+++ ..++.|.+|++....
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            43      2237788876543332222 11111111     2345688998667766555 567899999986554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.2e-09  Score=118.58  Aligned_cols=374  Identities=9%  Similarity=0.002  Sum_probs=206.2

Q ss_pred             EEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe---------CCCeEEEEE
Q 001358          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD  606 (1092)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s---------~dg~i~iwd  606 (1092)
                      .|.+++.++..     +.++.|.+||..+++....+.........+....|+||+++++...         ..+.+.++|
T Consensus        23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            57777776543     2245699999998887555555443345677788999999988764         357889999


Q ss_pred             CCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCC
Q 001358          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1092)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  686 (1092)
                      +.++..............+....|||||+.+|.... +.|.+.+..++...+........                    
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~~~~~~~lt~~g~~~--------------------  156 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--------------------  156 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecCCCceEEEecccCcc--------------------
Confidence            999887554443333345667899999999988764 67888887766444332211100                    


Q ss_pred             ceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecC-CeeEEeeecC
Q 001358          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPR  765 (1092)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~lw~~~~  765 (1092)
                                   .+..|-.|     |-.+           .+   -...-.++.|||||+.|+....| ..+..+.++.
T Consensus       157 -------------~i~nG~~d-----~vye-----------ee---~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~  204 (465)
T d1xfda1         157 -------------VIYNGLSD-----WLYE-----------EE---ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT  204 (465)
T ss_dssp             -------------TEEEEECC-----HHHH-----------HT---TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred             -------------eeeccccc-----hhhh-----------hh---hccccceEEECCCCCeEEEEEecccccceeeccc
Confidence                         00000000     0000           00   00111345677777777666543 4455555432


Q ss_pred             Ccc-----------ccCcccccccCCccccCCCCCceeeecCCC--CCCCCCeeEEEEecCCCEEEEEeC-----CeEEE
Q 001358          766 NDL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL  827 (1092)
Q Consensus       766 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~v~~~~~s~dg~~l~~~sd-----g~i~i  827 (1092)
                      ...           ...|.......+.++++.++..........  .....-+..+.|++++++++...+     ..+.+
T Consensus       205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~  284 (465)
T d1xfda1         205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (465)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence            110           111222222345556665554222111110  012223677899999987777642     24888


Q ss_pred             EEcCCceeeEEecCCC-CC----eEEEEEcCCCCCEEE---EEeCCC--eEEEEEcC------CceeeEeeccccCCeEE
Q 001358          828 YIVMTFKTILTIMPPS-PT----ATSLAFNPHDNNVIA---IGMDDS--TILIYNAR------SSEVISKLEGHSKRVTG  891 (1092)
Q Consensus       828 wd~~~~~~~~~~~~~~-~~----i~~l~~s~~d~~~la---sg~~dg--~v~iwd~~------~~~~~~~l~~h~~~V~~  891 (1092)
                      +|..++++...+.... ..    -....|++ |++.++   ....+|  .++...+.      .++.+..+....-.|..
T Consensus       285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (465)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence            9999988765543222 11    23467899 665332   222333  33333322      23444555544555666


Q ss_pred             E-EEcCCCCEEE-EEeCCC--cEEEEEcC--CCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeC----CcEEE
Q 001358          892 L-VFSDALNILV-SSGGDA--QIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAI  961 (1092)
Q Consensus       892 l-~~spdg~~l~-s~s~Dg--~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d----~~v~l  961 (1092)
                      + +|.++++.+. ++..++  .-.+|.+.  ++...  .++.......   ....++.|||+|++++....    -.+.+
T Consensus       364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~  438 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTV  438 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eeeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence            4 6888877765 444332  23455543  32211  1222111111   24678999999999987422    24777


Q ss_pred             EEcCCceeeeee
Q 001358          962 YEAEELTCLKQW  973 (1092)
Q Consensus       962 wd~~~~~~~~~~  973 (1092)
                      ++..+++.+..+
T Consensus       439 ~~~~~~~~~~~L  450 (465)
T d1xfda1         439 HNTTDKKKMFDL  450 (465)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            777777766553

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.3e-08  Score=105.21  Aligned_cols=238  Identities=10%  Similarity=0.126  Sum_probs=143.7

Q ss_pred             cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCC---EEEEEEccCCCCccce
Q 001358          358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQ  434 (1092)
Q Consensus       358 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~  434 (1092)
                      .|.|-|...+....                    +..+...+.+.+|||||++||......   .+.+.+..++...   
T Consensus        20 ~l~i~d~dG~~~~~--------------------l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---   76 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---   76 (269)
T ss_dssp             EEEEEETTSCSCEE--------------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---
T ss_pred             EEEEEcCCCCCcEE--------------------EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---
Confidence            57777877555443                    334567788999999999999875433   4666777665422   


Q ss_pred             EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEE--ECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCe--
Q 001358          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK--  510 (1092)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~--  510 (1092)
                       .+..+.+......|+|||+.+ +.....++...++  ........... ..........+... ....+++...+|.  
T Consensus        77 -~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~  152 (269)
T d2hqsa1          77 -QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPD-SQNLAFTSDQAGRPQ  152 (269)
T ss_dssp             -EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTT-SSEEEEEECTTSSCE
T ss_pred             -EEeeeecccccceecCCCCee-eEeeecCCccceeecccccccceeee-eccccccccccccc-cccceecccccCCce
Confidence             345677888999999999953 2233333333333  22223222222 22222223333332 2234555555665  


Q ss_pred             EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCC
Q 001358          511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1092)
                      |.+.++..... ..............++|+++.++...... +...+.+.+...+..... . ..   .......|+|||
T Consensus       153 i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~~~~~-~-~~---~~~~~p~~SPDG  225 (269)
T d2hqsa1         153 VYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQVL-S-ST---FLDETPSLAPNG  225 (269)
T ss_dssp             EEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCCEEEC-C-CS---SSCEEEEECTTS
T ss_pred             Eeeeecccccc-eeeecccccccccccccccceeEEEeecC-CceeeeEeecccccceEe-e-cC---ccccceEECCCC
Confidence            44445544433 23344455677889999999999877543 356677778776654322 2 22   456778999999


Q ss_pred             CEEEEEeC---CCeEEEEECCCCceEEEEeCCCCCCCCceEEEcc
Q 001358          591 DQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1092)
Q Consensus       591 ~~l~~~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1092)
                      +.|+..+.   ...++++++..+.... +....  ..+...+|+|
T Consensus       226 ~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~~~p~WSP  267 (269)
T d2hqsa1         226 TMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQVKFPAWSP  267 (269)
T ss_dssp             SEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEEEEEEECC
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcEEeEEeCC
Confidence            99876543   3568899998766544 33222  2356778887

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=1.8e-08  Score=106.02  Aligned_cols=246  Identities=11%  Similarity=0.055  Sum_probs=161.2

Q ss_pred             cCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcE
Q 001358          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1092)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V  399 (1092)
                      +..|.+.+..+...+ .+..++++|||+ |+++...+++|..|+.......                     +......+
T Consensus        14 ~~~~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~   70 (302)
T d2p4oa1          14 ELAPAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKV   70 (302)
T ss_dssp             CCCCEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEE
T ss_pred             cCCcccEEEECCCCC-CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCc
Confidence            444555666665544 688999999998 7888888999888886543211                     22355789


Q ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE
Q 001358          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1092)
Q Consensus       400 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~  479 (1092)
                      .+++|+|||+++++...++.+..|+......................+++.++++  ++++.+.++.+..+|..++....
T Consensus        71 ~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~  148 (302)
T d2p4oa1          71 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSI  148 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCccee
Confidence            9999999999999988888888888765432222111223445678999999998  78888888999999988775433


Q ss_pred             EEec--------CC--cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEecCCCEEEEE
Q 001358          480 SFEG--------HG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSC  547 (1092)
Q Consensus       480 ~~~~--------~~--~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~  547 (1092)
                      ....        +.  .....+.+  . ++.++++.+..+.|..++.........  ..........+++.++|+..++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         149 WLEHPMLARSNSESVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             EecCCccceeeccCcccccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEE
Confidence            2221        11  12334443  2 235667777888888888766443221  11112234579999999977665


Q ss_pred             ecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEE---cCCCCEEEEEeCC
Q 001358          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD  599 (1092)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~s~d  599 (1092)
                      ..    .+.|..++... +......... ......+++|   ++|++.|++++..
T Consensus       226 ~~----~~~V~~i~p~G-~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         226 HI----YNSVVRIAPDR-STTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             BT----TCCEEEECTTC-CEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cC----CCcEEEECCCC-CEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            43    45588888754 3333332221 1246789999   6788888776544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=9.3e-08  Score=98.60  Aligned_cols=237  Identities=15%  Similarity=0.097  Sum_probs=145.7

Q ss_pred             CCCcceeEecccCCCCceEEeecCCCceEEEEEcCcC--cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCc
Q 001358          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1092)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~  398 (1092)
                      +......+.+..+.+.+...+|||||++|+.+....+  .+.+.+..++....                    +..+...
T Consensus        25 d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~   84 (269)
T d2hqsa1          25 DYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRH   84 (269)
T ss_dssp             ETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSC
T ss_pred             cCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeecc
Confidence            3344445555556678899999999997555544433  35566666655432                    4457788


Q ss_pred             EEEEEECCCCCEEEEEeC-CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCc--EEEEECCCC
Q 001358          399 VNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG  475 (1092)
Q Consensus       399 V~~l~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~--i~vwd~~~~  475 (1092)
                      +....|||||+.++.... ++...++........  ......+........+++++.. .+++...++.  |.+.++..+
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~  161 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGG  161 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSS
T ss_pred             cccceecCCCCeeeEeeecCCccceeeccccccc--ceeeeecccccccccccccccc-ceecccccCCceEeeeecccc
Confidence            899999999999988754 333333333322211  1122334445556678888875 4555555554  555565555


Q ss_pred             ceeEEEecCCcceEEEeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCc
Q 001358          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1092)
Q Consensus       476 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1092)
                      ... .+..+........+  ++++..++..+. .+...+|..+...................|||||+.|+..+.. .+.
T Consensus       162 ~~~-~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~  237 (269)
T d2hqsa1         162 APQ-RITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMG  237 (269)
T ss_dssp             CCE-ECCCSSSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTE
T ss_pred             cce-eeeccccccccccc--ccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCC
Confidence            433 33334444555556  446666666554 4555555555444444444555567788999999999877643 346


Q ss_pred             eeEEEEeCCCCeEEEEEeeccccCCceEEEEEcC
Q 001358          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1092)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1092)
                      ..|+++++..+...+ +....   +.+...+|+|
T Consensus       238 ~~l~~~~~dg~~~~~-lt~~~---g~~~~p~WSP  267 (269)
T d2hqsa1         238 SVLNLVSTDGRFKAR-LPATD---GQVKFPAWSP  267 (269)
T ss_dssp             EEEEEEETTSCCEEE-CCCSS---SEEEEEEECC
T ss_pred             cEEEEEECCCCCEEE-EeCCC---CcEEeEEeCC
Confidence            789999998776544 44434   5777888988

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=6.9e-08  Score=98.77  Aligned_cols=238  Identities=9%  Similarity=-0.026  Sum_probs=149.4

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      ....++++++|+.+++..+..+.+..++..+......                   ..+-......++++++|+++++..
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v~d~   75 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTDF   75 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEEEET
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEEeee
Confidence            4589999999985555555567777776654432211                   111123456789999999887777


Q ss_pred             CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc
Q 001358          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1092)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~  495 (1092)
                      ..+.+++++-.++..+.   .. ........+++.++++  ++++-.....+..++...................+++. 
T Consensus        76 ~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~-  148 (260)
T d1rwia_          76 NNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-  148 (260)
T ss_dssp             TTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC-
T ss_pred             eeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeec-
Confidence            77777766655543222   11 2234578999999998  66666666777777755443222111222345677774 


Q ss_pred             cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeecc
Q 001358          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1092)
Q Consensus       496 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1092)
                       +++.++++...++.|..++.+.................+++.++|+.+++...    .+.|..++...... ..+....
T Consensus       149 -~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~~  222 (260)
T d1rwia_         149 -NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFTG  222 (260)
T ss_dssp             -TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCCS
T ss_pred             -CCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccCC
Confidence             46678888888889999987765544433334456788999999987776643    55688887655432 2222111


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001358          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1092)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~  607 (1092)
                        ......++++++++.+++-..++.|+.++.
T Consensus       223 --~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         223 --LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             --CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             --CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence              245688999999887777666676665554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=1.2e-07  Score=97.01  Aligned_cols=238  Identities=10%  Similarity=0.047  Sum_probs=153.8

Q ss_pred             CCCCeeEEEEecCCCEEEEEe--CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001358          801 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1092)
Q Consensus       801 ~~~~v~~~~~s~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1092)
                      +......++++++|...++..  .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            445668999999999776654  36666665543332222222234567899999 888888777777777776655554


Q ss_pred             eEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeCC
Q 001358          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET  957 (1092)
Q Consensus       879 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d~  957 (1092)
                      +....+ .....++++.++++++++-.....+..++.......    .....+.    .....++++++|+++++ ..++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeeccccccccccccccceee----eeeeccc----CCcceeeecCCCCEeeeccccc
Confidence            444333 345789999999998887766777777776653311    1111221    13578999999998777 4667


Q ss_pred             cEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccceEEE
Q 001358          958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1037 (1092)
Q Consensus       958 ~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1037 (1092)
                      .|..++........ +..........+++.++|.++++....+.|..++....... .+.      .   ..--.|..++
T Consensus       162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i~  230 (260)
T d1rwia_         162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAVA  230 (260)
T ss_dssp             EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEEE
T ss_pred             cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEEE
Confidence            89999977544332 23344566789999999998888888888888876654322 111      0   1112456799


Q ss_pred             ECCCCCCEEEEEeCCCcEEEEec
Q 001358         1038 AHPLKPTQFAVGLTNGEVYVIEP 1060 (1092)
Q Consensus      1038 ~~p~~~~~l~~~~~dg~v~~w~~ 1060 (1092)
                      ++++ +.++++-..+++|+..+.
T Consensus       231 ~d~~-g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDSD-RTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECTT-CCEEEEEGGGTEEEEECC
T ss_pred             EeCC-CCEEEEECCCCEEEEEeC
Confidence            9984 677777666676665554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.91  E-value=2.5e-07  Score=97.05  Aligned_cols=240  Identities=13%  Similarity=0.133  Sum_probs=154.7

Q ss_pred             CeeEEEEecCCCEEEEEe--------CCeEEEEEcCCceeeEEecCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358          804 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      ....++|.++|+++++..        +++|..||..++.........    ......++|.+ ++..|+++...+.+..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            356789999999887653        356888888877654433221    23457899999 78878878777788899


Q ss_pred             EcCCceeeEeecccc----CCeEEEEEcCCCCEEEEEeC---------------CCcEEEEEcCCCceeeeeeeecCCCC
Q 001358          872 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~----~~V~~l~~spdg~~l~s~s~---------------Dg~i~iwd~~~~~~~~~~~~~~~~~~  932 (1092)
                      +.+++..........    .....+++.++|++.++-..               +|.|..++.+. +..  .......  
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~--~~~~~~~--  172 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMI--QVDTAFQ--  172 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEE--EEEEEES--
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-cee--EeeCCcc--
Confidence            987654222111111    13577999999999887532               22343343332 211  1111111  


Q ss_pred             cCCCCCceEEEEecCCC----EEEEE--eCCcEEEEEcCCceeee------eeccCCCcCEEEEEEecCCCEEEEEeCCC
Q 001358          933 MTLAPSETHIQFHKDQT----RFLLV--HETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1092)
Q Consensus       933 ~~~~~~v~~l~~s~dg~----~la~~--~d~~v~lwd~~~~~~~~------~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg 1000 (1092)
                           ....++|+|++.    .|.++  ..+.|..||+.....+.      .+...+......+++..+|++.++....+
T Consensus       173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence                 246799999875    44443  55778888875332221      11112234567899999999988888889


Q ss_pred             cEEEEECCCCceEEeeccccccCCCCccCcccceEEEECCCCCC-EEEEEeCCCcEEEEecCCCCC
Q 001358         1001 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLTNGEVYVIEPNEPGD 1065 (1092)
Q Consensus      1001 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~-~l~~~~~dg~v~~w~~~~~~~ 1065 (1092)
                      .|.+||.+++.....+....          -.+.+++|.|+ ++ ++++.+.+|.|...+.+.++.
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~----------~~~t~~afg~d-~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPF----------EKPSNLHFKPQ-TKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSS----------SCEEEEEECTT-SSEEEEEETTTTEEEEEECSSCBC
T ss_pred             EEEEEeCCCCEEEEEEECCC----------CCEEEEEEeCC-CCEEEEEECCCCcEEEEECCCCCh
Confidence            99999999888776654211          13456889984 54 667777889999988877664

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.4e-06  Score=96.66  Aligned_cols=260  Identities=10%  Similarity=0.073  Sum_probs=147.3

Q ss_pred             eecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC----
Q 001358          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----  416 (1092)
Q Consensus       341 ~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~----  416 (1092)
                      .|.+++.+ +. -..+|.|.+||+.+++.......                ..-....+....|||||++++....    
T Consensus        23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLIEG----------------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEECT----------------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEEcC----------------ccccccccceeEECCCCCeEEEEEcccce
Confidence            57788873 33 34568899999998875421110                0112346677899999999988743    


Q ss_pred             -----CCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEe-cCCcce--
Q 001358          417 -----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV--  488 (1092)
Q Consensus       417 -----d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v--  488 (1092)
                           .+.+.++|+.++.... +.........+....|||||+.  +|-.. ++.|.+.+..++..++... +....|  
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence                 4678999999886432 1112233456777899999995  44333 6678888887776655442 222222  


Q ss_pred             ---------------EEEeecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358          489 ---------------YSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       489 ---------------~~i~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                                     ..+.|  ++||++|+....| ..+..+.+....     ......+..+.+..-|..        .
T Consensus       161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~--------n  225 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSE--------N  225 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSC--------C
T ss_pred             cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeeccccc-----ccccceeeeeeccccCCC--------C
Confidence                           22334  6688888876533 334444332110     001112223333222211        1


Q ss_pred             CceeEEEEeCCCCeEEEEEee---ccccCCceEEEEEcCCCCEEEEEe-CC---CeEEEEECCCCceEEEEeCCCCC---
Q 001358          553 GESFLVEWNESEGAIKRTYQG---LQLQHNSVSVVHFDTAKDQILAAG-DD---HVIKIWDMNKVQLLTTIDAGGGL---  622 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~s-~d---g~i~iwd~~~~~~~~~~~~~~~~---  622 (1092)
                      ....+.++|+.++........   ......-+..+.|+|+++.++... .+   ..+.++|..+|+...........   
T Consensus       226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~  305 (465)
T d1xfda1         226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLH  305 (465)
T ss_dssp             CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEe
Confidence            134578888877654322211   111123467889999987665533 22   35888999999876655432210   


Q ss_pred             CCCceEEEccCCCEE
Q 001358          623 PENPRICFNKNGTLL  637 (1092)
Q Consensus       623 ~~v~~v~~s~~~~~l  637 (1092)
                      ..-....|++||+.+
T Consensus       306 ~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         306 RQNEEPVFSKDGRKF  320 (465)
T ss_dssp             CCCCCCEECTTSCSE
T ss_pred             ccCCceeEccCCCee
Confidence            012346788888754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.89  E-value=6e-07  Score=94.09  Aligned_cols=246  Identities=14%  Similarity=0.090  Sum_probs=154.7

Q ss_pred             CceEEeecCCCceEEEEEcC-------cCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCC
Q 001358          336 SPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~-------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg  408 (1092)
                      ....++|.|||+. +++...       +++|..||..++.......               ............++|.++|
T Consensus        19 g~EGpa~d~dG~l-y~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---------------~~~~~~~g~P~Gl~~~~dg   82 (314)
T d1pjxa_          19 GAEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             TCEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSSS
T ss_pred             CCeEeEEeCCCCE-EEEECccccccccCCEEEEEECCCCcEEEEEC---------------CccccCCCcceeEEEeCCC
Confidence            5667899999984 444322       3678889988876543210               0011112346789999999


Q ss_pred             CEEEEEeCCCEEEEEEccCCCCccceEEecccc-cceeEEEeeCCCCcEEEEEEeC---------------CCcEEEEEC
Q 001358          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDA  472 (1092)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~l~l~s~~~---------------d~~i~vwd~  472 (1092)
                      ..|+++...+.|...+.+++..........+.. ...+.+++.++|.  +.++-..               +|.|..++.
T Consensus        83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence            988888877778888987653211000111111 1357899999998  5665421               234444543


Q ss_pred             CCCceeEEEecCCcceEEEeecccCCc---cEEEEEecCCeEEEEEcCCCCceE------EecCC-CCceEEEEEecCCC
Q 001358          473 VTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDAP-GLGCTRMAYSANGR  542 (1092)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~i~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~-~~~i~~~~~s~dg~  542 (1092)
                       .|+..... .....-+.++|++..++   .++++-+..+.|..|++.......      .+... ......+++..+|+
T Consensus       161 -dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         161 -DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence             34433322 23334467888776543   245556778889988876544322      11221 22456899999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEE-EEeCCCeEEEEECC
Q 001358          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMN  608 (1092)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~s~dg~i~iwd~~  608 (1092)
                      ..++...    .+.|++||..++..+..+....   ....+++|.|+++.|+ +.+.+|.|...++.
T Consensus       239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8776543    5579999999888777776544   5788999999987654 45677888877764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=1.2e-06  Score=90.28  Aligned_cols=242  Identities=12%  Similarity=0.136  Sum_probs=162.2

Q ss_pred             ccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCC--CCCCCCCeeEEEEec
Q 001358          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT--DSNSQEAVPCFALSK  812 (1092)
Q Consensus       735 ~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~v~~~~~s~  812 (1092)
                      .....++++++|+.+++-..+..|++|+.+..                       .+......  ..+.......+++..
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~-----------------------~~~~~~~~~~~~~~~~~p~~~~~~~   79 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR-----------------------FKFQFGECGKRDSQLLYPNRVAVVR   79 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTTSC-----------------------EEEEECCBSSSTTCBSSEEEEEEET
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCCCC-----------------------EEEEecccCCCcccccccccccccc
Confidence            34678999999997777677788888863211                       11111000  001222344566665


Q ss_pred             CCC-EEEEEe--CCeEEEEEcCCceeeEEecC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEee--cccc
Q 001358          813 NDA-YLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHS  886 (1092)
Q Consensus       813 dg~-~l~~~s--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~  886 (1092)
                      +.. ++++..  ++.|..++. .++....+.. .......+++.+ ++.++++....+.+.+++.. ++.+..+  ..+.
T Consensus        80 ~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~  156 (279)
T d1q7fa_          80 NSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHL  156 (279)
T ss_dssp             TTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTC
T ss_pred             cccccceeccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccc
Confidence            544 444443  356777775 4566666543 345678999999 88888888888889998865 5666655  3466


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEc
Q 001358          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA  964 (1092)
Q Consensus       887 ~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~  964 (1092)
                      .....+++.++++.+++....+.|++||.......   .+. ..+..   .....+++.++|+++++-  .+..|.+|+.
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~---~~g-~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~  229 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLR---QIG-GEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ  229 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEE---EES-CTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             cccceeeeccceeEEeeeccccceeeeecCCceee---eec-ccccc---cCCcccccccCCeEEEEECCCCcEEEEECC
Confidence            77889999999999999888999999998763211   111 12222   257899999999988773  3446999984


Q ss_pred             CCceeeeeeccC-CCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 001358          965 EELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1092)
Q Consensus       965 ~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~ 1011 (1092)
                       +|+.+..+... .......+++.+||.+++ +..+.+|++|+.....
T Consensus       230 -~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         230 -DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             -TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             -CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence             57766654332 244688999999997555 5578999999988764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.88  E-value=2.7e-07  Score=96.61  Aligned_cols=235  Identities=10%  Similarity=0.029  Sum_probs=148.9

Q ss_pred             CCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-eE
Q 001358          803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS  880 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~  880 (1092)
                      ..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+...... ..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence            3578999999999988876 68888887553 3 334444667899999999 889999988888888888754321 12


Q ss_pred             ee--ccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCC--CCcCCCCCceEEEEecCCCEEEE--E
Q 001358          881 KL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD--GVMTLAPSETHIQFHKDQTRFLL--V  954 (1092)
Q Consensus       881 ~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~s~dg~~la~--~  954 (1092)
                      .+  .........+++.++|+++++.+.++.+..++..++.......-....  ...........+++  ++..+..  .
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecC
Confidence            22  124456889999999999999888998888888876432211111000  11110113345555  4455554  4


Q ss_pred             eCCcEEEEEcCCceeeeee-ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccccCCCCccCcccc
Q 001358          955 HETHLAIYEAEELTCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus       955 ~d~~v~lwd~~~~~~~~~~-~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
                      ..+.|..++.......... ...+......++|++||+++++...++.|..++.... ........        .....+
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~~--------~~~~~p  253 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQAE--------QGVIGS  253 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECGG--------GTCTTE
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEecC--------CCCCCc
Confidence            5677888887654332211 1112345677999999998888888899998877643 22111100        111345


Q ss_pred             eEEEEC---CCCCCEEEEEeCC
Q 001358         1034 HAIAAH---PLKPTQFAVGLTN 1052 (1092)
Q Consensus      1034 ~~~~~~---p~~~~~l~~~~~d 1052 (1092)
                      .+++|.   | |++.|.+++..
T Consensus       254 t~vafg~~~~-D~~~Lyvtt~~  274 (302)
T d2p4oa1         254 TAVAFGQTEG-DCTAIYVVTNG  274 (302)
T ss_dssp             EEEEECCSTT-TTTEEEEEECT
T ss_pred             eEEEEcCCCC-CCCEEEEECCC
Confidence            678884   4 56666665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=1.5e-06  Score=89.54  Aligned_cols=240  Identities=10%  Similarity=0.100  Sum_probs=161.1

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC------CCCeEEEEEcCCCCCEEEEE-eCCCeEEEEEcCC
Q 001358          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIG-MDDSTILIYNARS  875 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~~  875 (1092)
                      ....++++++|+++++-. ++.|++||.+ ++.+..+...      ......+++.++.+.++++. +.++.|..++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            457899999999776654 5889999965 6666665321      11345667665345455443 344577777764 


Q ss_pred             ceeeEeec-cccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-
Q 001358          876 SEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-  953 (1092)
Q Consensus       876 ~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-  953 (1092)
                      ++....+. ........+++.++|+++++....+.+.+++.+.....   .+.... +.   .....+++.++|..+++ 
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~---~~g~~~-~~---~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH---KFGCSK-HL---EFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE---EEECTT-TC---SSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceee---cccccc-cc---cccceeeeccceeEEeee
Confidence            55555553 35566789999999999888877788888886652211   111111 11   25788999999988777 


Q ss_pred             EeCCcEEEEEcCCceeeeeec-cCCCcCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceEEeeccccccCCCCccCcc
Q 001358          954 VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHV 1031 (1092)
Q Consensus       954 ~~d~~v~lwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v 1031 (1092)
                      ...+.|++||.. |+.+..+- .++......+++.++|+.+++-+. +++|.+|+ .+|+.+..+....        ..-
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~  244 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA  244 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence            456789999975 55555532 234566889999999998877544 45799998 4588776665221        112


Q ss_pred             cceEEEECCCCCCEEEEEeCCCcEEEEecCCCC
Q 001358         1032 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1064 (1092)
Q Consensus      1032 ~~~~~~~~p~~~~~l~~~~~dg~v~~w~~~~~~ 1064 (1092)
                      .+..++++| |+ .|++++.++.|++|+..--.
T Consensus       245 ~p~~vav~~-dG-~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         245 QCFDVALMD-DG-SVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEEEET-TT-EEEEEETTTEEEEEECSCCC
T ss_pred             CEeEEEEeC-CC-cEEEEeCCCeEEEEEeeeec
Confidence            456788888 45 46667789999999985444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.77  E-value=4.5e-06  Score=87.65  Aligned_cols=232  Identities=9%  Similarity=0.083  Sum_probs=148.5

Q ss_pred             CeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcee
Q 001358          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV  878 (1092)
Q Consensus       804 ~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~  878 (1092)
                      ....++|.++|+++++-. +++|..|+..+.+....+.........+++++ |++++++...+    +.+...+..++..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            456899999998666553 68899999887766666655666788999999 88887765432    3455555555544


Q ss_pred             eEeecc--ccCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCE
Q 001358          879 ISKLEG--HSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1092)
Q Consensus       879 ~~~l~~--h~~~V~~l~~spdg~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~  950 (1092)
                      ......  -......+++.++|++.++....      +.+..++.+......  .....       .....++|+||++.
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~-------~~pnGia~s~dg~~  190 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKV  190 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Eeecc-------ceeeeeeeccccce
Confidence            333322  12347789999999987764332      224444444322111  11111       13567999999997


Q ss_pred             EEEE--eCCcEEEEEcCCc-eeee---e---eccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccccc
Q 001358          951 FLLV--HETHLAIYEAEEL-TCLK---Q---WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1092)
Q Consensus       951 la~~--~d~~v~lwd~~~~-~~~~---~---~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~~ 1021 (1092)
                      |.++  ..+.|..|++... ....   .   ...........+++.++|++.++....+.|.+|+- .|+.+.++.....
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~  269 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR  269 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCc
Confidence            7663  5678999987632 1111   1   01111234678999999999898888999999995 6888888764332


Q ss_pred             cCCCCccCcccceEEEECCCCCCEEEEEeC
Q 001358         1022 LRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1051 (1092)
Q Consensus      1022 ~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~ 1051 (1092)
                      .+    .....+.+++|.|. ...+++...
T Consensus       270 ~~----~~~~~~~~~~~~~~-~~~~~~t~~  294 (319)
T d2dg1a1         270 DE----GHMLRSTHPQFIPG-TNQLIICSN  294 (319)
T ss_dssp             GG----TCSCBCCEEEECTT-SCEEEEEEE
T ss_pred             CC----CcCceeeeEEEeCC-CCEEEEEcC
Confidence            11    12334568889884 455554443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.62  E-value=2.5e-05  Score=81.77  Aligned_cols=232  Identities=8%  Similarity=-0.006  Sum_probs=146.8

Q ss_pred             CceEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~  415 (1092)
                      .+..++|.++|+ |.++-...+.|.-|+.++++....                   ..........++|++||+++++..
T Consensus        41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va~~  100 (319)
T d2dg1a1          41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVCYL  100 (319)
T ss_dssp             CEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEEEC
T ss_pred             CcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEEec
Confidence            557899999998 777777889999999887654432                   223456788999999999888764


Q ss_pred             CC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeC------CCcEEEEECCCCceeEEEecCC
Q 001358          416 SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       416 ~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      .+    +.+...+..++.... ...-..-......+++.++|+  +.++...      .+.+..++.+.+ .+..+...-
T Consensus       101 ~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~  176 (319)
T d2dg1a1         101 GDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNI  176 (319)
T ss_dssp             TTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEE
T ss_pred             CCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccc-eeEEEeecc
Confidence            32    335555555543222 111011123577899999998  5555322      123555554433 333333333


Q ss_pred             cceEEEeecccCCccE-EEEEecCCeEEEEEcCCCCceE--------EecCCCCceEEEEEecCCCEEEEEecCCCCcee
Q 001358          486 APVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGARV--------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~--------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1092)
                      ...+.++|++  +++. .++-+..+.|..|+++......        ...........+++.++|+..++...    .+.
T Consensus       177 ~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~g~  250 (319)
T d2dg1a1         177 SVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QGR  250 (319)
T ss_dssp             SSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TTE
T ss_pred             ceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----CCE
Confidence            3456788854  5554 4666778899999987543211        11112234568999999997777653    567


Q ss_pred             EEEEeCCCCeEEEEEeecc---ccCCceEEEEEcCCCCEEEEEeC
Q 001358          557 LVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD  598 (1092)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~s~  598 (1092)
                      |.++|. .|+.+..+....   .+...+.+++|.++...+++.+.
T Consensus       251 V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         251 VLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            999996 688887776432   11235789999998887777653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.57  E-value=3.9e-06  Score=86.52  Aligned_cols=236  Identities=12%  Similarity=0.049  Sum_probs=128.8

Q ss_pred             eecCC--CceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeC-C
Q 001358          341 DFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-K  417 (1092)
Q Consensus       341 ~~spd--g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~-d  417 (1092)
                      ..|||  |++++.++  ++.|.+.|+.+++...                    ++.+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence            56899  99766554  3668888999887653                    5667788999999999999997642 1


Q ss_pred             -----CEEEEEEccCCCCccceE---EecccccceeEEEeeCCCCcEEEEEEeC------CCcEEEEECCCCceeEEEec
Q 001358          418 -----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEG  483 (1092)
Q Consensus       418 -----~~i~iwd~~~~~~~~~~~---~l~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~  483 (1092)
                           ..|.+++..+++..+...   ............+|+|||+  .++....      ...+...+...+.....   
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  137 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPL---  137 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEEC---
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEe---
Confidence                 247777887775432100   0112223456789999999  4544322      12344555544443221   


Q ss_pred             CCcceEEEeecccCCccEEEEEecCC-----------eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC
Q 001358          484 HGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1092)
Q Consensus       484 ~~~~v~~i~~~~~~~~~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1092)
                      +........+  ..++..++....+.           ......... .................++++  .++... +..
T Consensus       138 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~  211 (281)
T d1k32a2         138 NLGPATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHVSSPVIVGH--RIYFIT-DID  211 (281)
T ss_dssp             CSCSCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCCEEEEEETT--EEEEEE-CTT
T ss_pred             cCCccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCccccceeeeecc--ccceec-ccc
Confidence            1122212111  11222222221111           011111111 111122222233344455554  333333 234


Q ss_pred             CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001358          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  615 (1092)
                      +...|+++|+.+++..+......   ..  ...|+|||+.|+.. .++.|+++|+.+++....
T Consensus       212 ~~~~l~~~d~~g~~~~~lt~~~~---~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         212 GFGQIYSTDLDGKDLRKHTSFTD---YY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             SSCEEEEEETTSCSCEECCCCCS---SC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             cccceEEEeCCCCceEEeecCCC---cc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            46679999998776554322222   22  34689999988764 468899999988876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.30  E-value=0.00032  Score=71.88  Aligned_cols=216  Identities=9%  Similarity=0.021  Sum_probs=142.0

Q ss_pred             EEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001358          446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1092)
Q Consensus       446 ~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~  525 (1092)
                      ...|.+.... ++.+--..+.|.-||.++++.. .+. ....+.++++.  +++.++++ +.+ .+..+|..+++.....
T Consensus        22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            4567775553 3444446788999998888653 332 34567777764  45555554 454 5788998887655433


Q ss_pred             cC----CCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEE-EeCCC
Q 001358          526 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH  600 (1092)
Q Consensus       526 ~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~s~dg  600 (1092)
                      ..    ....+..+.+.|+|+..++..........-.+|....++........    ...+.++|+++++.++. -+..+
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence            22    22357889999999987765543322333455666667665555443    35678999999987655 55678


Q ss_pred             eEEEEECCC------CceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeec
Q 001358          601 VIKIWDMNK------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  673 (1092)
Q Consensus       601 ~i~iwd~~~------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~  673 (1092)
                      .|+.+++..      ++........+.......+++..+|++.++....+.|..|+. +++.+..+......+++++|.
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEe
Confidence            898888643      122222222222234578999999998888888899999995 677888887776778888886

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.21  E-value=0.0004  Score=71.14  Aligned_cols=223  Identities=14%  Similarity=0.062  Sum_probs=146.0

Q ss_pred             eEEeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC
Q 001358          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1092)
Q Consensus       338 ~~v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d  417 (1092)
                      -...|++....|..+--..+.|.-||..+++...      |.               ....+.++++.++|.++++ +.+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va-~~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIA-SDD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEE-ETT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEE-EeC
Confidence            3567887554466666567889999999885432      11               2357889999999987775 455


Q ss_pred             CEEEEEEccCCCCccceEEecc--cccceeEEEeeCCCCcEEEEEEeC----CCcEEEEECCCCceeEEEecCCcceEEE
Q 001358          418 HIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1092)
Q Consensus       418 ~~i~iwd~~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~l~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~i  491 (1092)
                      | +.++|..+++... ......  ....++.+.+.|+|+  +.++...    .+.-.+|.+..++....+.. -..-+.+
T Consensus        79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence            5 9999999886322 111111  123688999999998  4444322    23456677677765544433 2345667


Q ss_pred             eecccCCcc-EEEEEecCCeEEEEEcCCCCc------eE--EecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeC
Q 001358          492 CPHAKENIH-FIFSISVDGKIKAWLYDSLGA------RV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1092)
Q Consensus       492 ~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~------~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1092)
                      ++++  ++. ++++-+..+.|..++++....      ..  ...........+++..+|+..++...    .+.|..||.
T Consensus       154 ~~s~--d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp  227 (295)
T d2ghsa1         154 CFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT  227 (295)
T ss_dssp             EECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred             eecC--CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence            7754  444 556667788899998764321      11  22334556788999999987776543    446999996


Q ss_pred             CCCeEEEEEeeccccCCceEEEEEc-CCCCEEEEEe
Q 001358          563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG  597 (1092)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~s  597 (1092)
                       .|+.+..+.-..   ..+++++|. ++.+.|++.+
T Consensus       228 -~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 -DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             -TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred             -CCcEeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence             688888887655   568999995 6777776654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=4.6e-05  Score=78.09  Aligned_cols=229  Identities=13%  Similarity=0.110  Sum_probs=123.8

Q ss_pred             cccccCCccccCCCcceeEecccCCCCceEEeecCCCceEEEEEcCcC-----cEEEEecCCCCceeeeeeeeeeccccc
Q 001358          310 MFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG-----DTGLWDVNSGQKLFIRNFKVWDIGACS  384 (1092)
Q Consensus       310 ~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasg~~d~-----~i~iwd~~~~~~~~~~~~~~~d~~~~~  384 (1092)
                      .|.+.+..|+.++.....+.|..+.+.+...+|||||++++.+...++     .|.+++..+++.......         
T Consensus        16 ~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~---------   86 (281)
T d1k32a2          16 IFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF---------   86 (281)
T ss_dssp             EEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC---------
T ss_pred             EEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec---------
Confidence            355555566667777777888888888999999999997655543332     477888887765531000         


Q ss_pred             ceeEEeeecCCCCcEEEEEECCCCCEEEEEeCC------CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEE
Q 001358          385 MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV  458 (1092)
Q Consensus       385 ~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l  458 (1092)
                          ..............+|+|||+.|+.....      ..+...+..++...      ..+....... +.+++.. .+
T Consensus        87 ----~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~-~~  154 (281)
T d1k32a2          87 ----SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATHI-LFADGRR-VI  154 (281)
T ss_dssp             ----CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSEE-EEETTEE-EE
T ss_pred             ----CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCcccee-eecCCCe-EE
Confidence                00011223456778999999999986432      23555666554311      1233333333 4455543 33


Q ss_pred             EEEeCCC-----------cEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEe
Q 001358          459 ITCGDDK-----------TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDY  525 (1092)
Q Consensus       459 ~s~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~  525 (1092)
                      +....+.           ...+.....+...... .+........+  .++ .++.....++  .|.++|++........
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt  230 (281)
T d1k32a2         155 GRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT  230 (281)
T ss_dssp             EESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred             EeeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeee--ecc-ccceecccccccceEEEeCCCCceEEee
Confidence            3322211           1122222222222222 22222222222  222 2333343443  4666677766655433


Q ss_pred             cCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE
Q 001358          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1092)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1092)
                      ......  ...|+|||+.|+...     ++.|+++|+.+++..+.
T Consensus       231 ~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         231 SFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred             cCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence            322223  346899999988754     34599999998876544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=0.014  Score=57.77  Aligned_cols=242  Identities=11%  Similarity=-0.004  Sum_probs=150.3

Q ss_pred             CCEEEEEeCCCEEEEEEccCCCCc--cceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCC
Q 001358          408 GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1092)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~  485 (1092)
                      |.+|+.+.. +.|+-.+++.....  .....+..+...+..++|.+..+. ++.+-..++.|+..++..+.....+....
T Consensus         1 ~~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CCEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            345555433 35777777654322  122234445556888999988775 44555667889988887665554454444


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ..+..+++.... +.+.++-...+.|.+.+++.................+++.|...+++...... ....|..-++...
T Consensus        79 ~~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~  156 (263)
T d1npea_          79 GSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (263)
T ss_dssp             CCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             ccccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCC
Confidence            567888885433 34455666678999999987665554444445788999999888877654321 2334555566544


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .........   ......+++.+.++.|+.+ ...+.|...++........+....   ....+++. ++.+..+-...+
T Consensus       157 ~~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~-~~~lYwtd~~~~  229 (263)
T d1npea_         157 NRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ---YPFAVTSY-GKNLYYTDWKTN  229 (263)
T ss_dssp             CCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC---SEEEEEEE-TTEEEEEETTTT
T ss_pred             Cceeeeeec---ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC---CcEEEEEE-CCEEEEEECCCC
Confidence            333222221   2466889999888888666 467889999987655544443321   23567765 344444444668


Q ss_pred             eEEEEECCCCCeeeec
Q 001358          645 RIKILETPESNSVDAA  660 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~  660 (1092)
                      .|...+..+++.....
T Consensus       230 ~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         230 SVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCccceEE
Confidence            8888888877665543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.88  E-value=0.0091  Score=66.78  Aligned_cols=202  Identities=11%  Similarity=0.021  Sum_probs=118.8

Q ss_pred             CCCcEEEEEEeCCCcEEEEEC-CCCceeEEEecCCcc----e-------EEEeecccCCccEEEEEecCCeEEEEEcCCC
Q 001358          452 PCKQISVITCGDDKTIKVWDA-VTGSRTYSFEGHGAP----V-------YSLCPHAKENIHFIFSISVDGKIKAWLYDSL  519 (1092)
Q Consensus       452 d~~~l~l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~----v-------~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~  519 (1092)
                      +|.  ++++.+.++.|...|. ++|+.+.++......    .       ..+++.    +..++.++.||.+.-.|.+++
T Consensus        62 ~g~--vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG  135 (571)
T d2ad6a1          62 GDM--MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTG  135 (571)
T ss_dssp             TTE--EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTC
T ss_pred             CCE--EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhh
Confidence            454  3333334678888887 479988877421110    0       112221    246788899999999999998


Q ss_pred             CceEEecCCC----CceEEEEEecCCCEEEEEec-CCCCceeEEEEeCCCCeEEEEEeeccc------------------
Q 001358          520 GARVDYDAPG----LGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQL------------------  576 (1092)
Q Consensus       520 ~~~~~~~~~~----~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------  576 (1092)
                      +.........    ..+++--.-.++..++..+. +....+.|+-+|..+|+.+-.+.....                  
T Consensus       136 ~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~  215 (571)
T d2ad6a1         136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG  215 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             hhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccC
Confidence            8776543321    11211112224444333221 112356799999999999877653210                  


Q ss_pred             ----------------cCCce-EEEEEcCCCCEEEEEeC----------------CCeEEEEECCCCceEEEEeCCCCC-
Q 001358          577 ----------------QHNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL-  622 (1092)
Q Consensus       577 ----------------~~~~v-~~~~~~~~~~~l~~~s~----------------dg~i~iwd~~~~~~~~~~~~~~~~-  622 (1092)
                                      ....+ ...++.++...++.+..                ...+.-.|.++|+.+...+...+. 
T Consensus       216 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~  295 (571)
T d2ad6a1         216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE  295 (571)
T ss_dssp             CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred             cccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccc
Confidence                            00111 23466677777766543                346778899999999887753221 


Q ss_pred             ------CCCceEEEccCCC---EEEEEeCCCeEEEEECCCCCeeee
Q 001358          623 ------PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDA  659 (1092)
Q Consensus       623 ------~~v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~  659 (1092)
                            ..........+++   .++.++.+|.+.++|..+++.+..
T Consensus       296 Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         296 WDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             SCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence                  1111222233444   467788899999999999987754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.86  E-value=0.0016  Score=69.77  Aligned_cols=286  Identities=9%  Similarity=-0.029  Sum_probs=143.0

Q ss_pred             CceEEeecCCCceEEEEEcCc-----C------cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d-----~------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~  404 (1092)
                      .+...+...||+ +++.|+.+     +      .+.+||..++.-...                ......|.......++
T Consensus        21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~----------------~~~~~~~~~~~~~~~~   83 (387)
T d1k3ia3          21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR----------------TVTVTKHDMFCPGISM   83 (387)
T ss_dssp             CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC----------------EEEECSCCCSSCEEEE
T ss_pred             ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeec----------------CCCCCCcccceeEEEE
Confidence            444555567887 66666542     1      267888887753321                0112234333446688


Q ss_pred             CCCCCEEEEEeCC-CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCC------CcEEEEECCCCce
Q 001358          405 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR  477 (1092)
Q Consensus       405 spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~~~~  477 (1092)
                      .+||++++.|+.+ ..+.+||..++.-.. ...+.. ...-..++..+||+  +++.|+.+      ..+.+||..+.+-
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~-~r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQV-ARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSS-CCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCCcEEEeecCCCcceeEecCccCcccc-cccccc-cccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence            9999999998655 579999998764221 111111 11234567788998  67777643      3689999888754


Q ss_pred             eEEEec---------CCcceE---EEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--C------CCceEEEEE
Q 001358          478 TYSFEG---------HGAPVY---SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P------GLGCTRMAY  537 (1092)
Q Consensus       478 ~~~~~~---------~~~~v~---~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~------~~~i~~~~~  537 (1092)
                      ...-..         +...+.   .+......++..++.+...+.+.+++..+.........  .      ...-.++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (387)
T d1k3ia3         160 TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMY  239 (387)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEE
T ss_pred             eecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEe
Confidence            321100         000000   00000122455666666666666666554432221100  0      001122223


Q ss_pred             -ecCCCEEEEEecCCCC----ceeEEEEeCC---CCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC----------
Q 001358          538 -SANGRRLFSCGTSKEG----ESFLVEWNES---EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------  599 (1092)
Q Consensus       538 -s~dg~~l~~~~~~~~~----~~~i~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d----------  599 (1092)
                       ..+++.++.++.....    .....+.+..   .................-.+....++++.+++|+.+          
T Consensus       240 ~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~  319 (387)
T d1k3ia3         240 DAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP  319 (387)
T ss_dssp             ETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSB
T ss_pred             eccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcE
Confidence             3466777776643211    1122222222   111111111100001223345566888888887743          


Q ss_pred             -CeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeC
Q 001358          600 -HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1092)
Q Consensus       600 -g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  642 (1092)
                       .++.+||..+.+....-........-....+.+||+.++.|+.
T Consensus       320 ~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         320 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence             1478899887765433222111111123446789999999884

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.85  E-value=0.0036  Score=70.39  Aligned_cols=373  Identities=12%  Similarity=0.089  Sum_probs=191.3

Q ss_pred             EEEEeCCCcEEEEECCCCceeEEEecCCc----------ce-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEec
Q 001358          458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1092)
Q Consensus       458 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----------~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  526 (1092)
                      ++.++.++.|.-+|.++|+.+.++.....          .+ ..+.+    ....++.++.|+.+.-.|..+++......
T Consensus        80 vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE----ECCcEEEEecccceeeeccccccceeccc
Confidence            66677788999999999999988742211          01 01111    12367778889999888988888776543


Q ss_pred             CCCC---ce--EEEEEecCCCEEEEEec--CCCCceeEEEEeCCCCeEEEEEeecccc----------------------
Q 001358          527 APGL---GC--TRMAYSANGRRLFSCGT--SKEGESFLVEWNESEGAIKRTYQGLQLQ----------------------  577 (1092)
Q Consensus       527 ~~~~---~i--~~~~~s~dg~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~~~----------------------  577 (1092)
                      ....   .+  +....-.++ .+++++.  .....+.|+-+|..+|+.+-.+......                      
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~  234 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             CccCCcceEEeecceEEEec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCc
Confidence            2211   11  111111133 3444332  2233567999999999998776432100                      


Q ss_pred             ------CCce-EEEEEcCCCCEEEEEeC-------------------CCeEEEEECCCCceEEEEeCCCCC-------CC
Q 001358          578 ------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------PE  624 (1092)
Q Consensus       578 ------~~~v-~~~~~~~~~~~l~~~s~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~  624 (1092)
                            ...+ ...++.++...++.+..                   ...|.-.|.++++.....+...+.       ..
T Consensus       235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~  314 (573)
T d1kb0a2         235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP  314 (573)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccce
Confidence                  0111 13456676666665331                   124667788888887766543211       11


Q ss_pred             CceEEEccCC---CEEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccc
Q 001358          625 NPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1092)
Q Consensus       625 v~~v~~s~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1092)
                      ........++   ..++.++.+|.+.++|..+++.+............ .+..                      .+..+
T Consensus       315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~-~~~~----------------------~~~~~  371 (573)
T d1kb0a2         315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS-GYDK----------------------HGKPI  371 (573)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE-EECT----------------------TSCEE
T ss_pred             eeecceecCCCceeeeeeccccceeEEecccccccccccccccccccc-cccc----------------------cccee
Confidence            1112222333   35777888999999999999877655422111100 0000                      00000


Q ss_pred             eeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCc
Q 001358          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1092)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~  781 (1092)
                      .....            ..........+.......-...+++|+...++....+....++.............       
T Consensus       372 ~~~~~------------~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~-------  432 (573)
T d1kb0a2         372 GIAAA------------RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPG-------  432 (573)
T ss_dssp             ECGGG------------GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTT-------
T ss_pred             eeeec------------cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCC-------
Confidence            00000            00000000111100111112357888888888777776555544322111000000       


Q ss_pred             cccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCceeeEEecCCCCCe-EEEEEcCCCCCEEE
Q 001358          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIA  860 (1092)
Q Consensus       782 ~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~la  860 (1092)
                        .+..+            .....  ..+ +.+.-.....-|.+.-||+.+++.+.+........ ..++.   .+.+|+
T Consensus       433 --~~~~g------------~~~~~--~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF  492 (573)
T d1kb0a2         433 --KPQSG------------TGWNT--AKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVF  492 (573)
T ss_dssp             --STTGG------------GTCCC--CEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEE
T ss_pred             --ccccc------------ccccc--ccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEE
Confidence              00000            00000  000 00000000012578889999999887765432211 22333   456888


Q ss_pred             EEeCCCeEEEEEcCCceeeEeecc----ccCCeEEEEEcCCCCE
Q 001358          861 IGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALNI  900 (1092)
Q Consensus       861 sg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~~  900 (1092)
                      +|+.||.++.+|.++|+.+..+.-    +..+   +.|..||+.
T Consensus       493 ~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQ  533 (573)
T d1kb0a2         493 QGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQ  533 (573)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEE
T ss_pred             EECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEE
Confidence            899999999999999999988763    2233   445568864

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.023  Score=56.33  Aligned_cols=239  Identities=9%  Similarity=-0.040  Sum_probs=143.4

Q ss_pred             EEEEEeCCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCc----eeEEEecCC
Q 001358          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG  485 (1092)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~----~~~~~~~~~  485 (1092)
                      +|+.+... .|+..++.+....    .+......+.+++|.+..+. +..+-..++.|.--++....    ....+....
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            34444433 3888888765422    22234456788999988775 34444456677766654321    112222233


Q ss_pred             cceEEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCC
Q 001358          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1092)
Q Consensus       486 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1092)
                      ..+..+++.+.. +.+.++-...+.|.+.+++.................+++.|...+|+.....  ....|...++...
T Consensus        77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs  153 (266)
T d1ijqa1          77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  153 (266)
T ss_dssp             SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence            456677775443 3455566677889999998776666555555677899999977777665422  2345777776554


Q ss_pred             eEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCCC
Q 001358          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1092)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  644 (1092)
                      .........   ......+++.+.++.|+.+ ...+.|...++....................+++. ++.+..+-..++
T Consensus       154 ~~~~l~~~~---~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~  229 (266)
T d1ijqa1         154 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (266)
T ss_dssp             CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             ceecccccc---cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCC
Confidence            443333222   2457889999988877776 46688999998766554444433332334456665 344444444667


Q ss_pred             eEEEEECCCCCeeeecc
Q 001358          645 RIKILETPESNSVDAAG  661 (1092)
Q Consensus       645 ~i~iw~~~~~~~~~~~~  661 (1092)
                      .|...+..++.....+.
T Consensus       230 ~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         230 AIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EEEEEETTTCCCCEEEE
T ss_pred             eEEEEECCCCcceEEEE
Confidence            88887777765554444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.74  E-value=0.013  Score=65.55  Aligned_cols=193  Identities=14%  Similarity=0.125  Sum_probs=119.6

Q ss_pred             CeEEEEEcCCceeeEEecCCC------------------------------CCe-EEEEEcCCCCCEEEEEeC-------
Q 001358          823 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD-------  864 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~s~~d~~~lasg~~-------  864 (1092)
                      |.|.-+|.++|+.+-++..-.                              ..+ ..+++.+ ...++..+..       
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence            679999999999887764210                              011 2256666 5555554332       


Q ss_pred             ------------CCeEEEEEcCCceeeEeeccccCCeE---------EEEEcCCC---CEEEEEeCCCcEEEEEcCCCce
Q 001358          865 ------------DSTILIYNARSSEVISKLEGHSKRVT---------GLVFSDAL---NILVSSGGDAQIFVWDVDGWGI  920 (1092)
Q Consensus       865 ------------dg~v~iwd~~~~~~~~~l~~h~~~V~---------~l~~spdg---~~l~s~s~Dg~i~iwd~~~~~~  920 (1092)
                                  ...|.-.|+++|+.+..++.....+.         -+.+..++   +.++.++.+|.+.++|-.+++.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        23577789999998776654222111         12222244   3677788999999999998875


Q ss_pred             eeeeeeecC-----------------------------CCCcCCCCCceEEEEecCCCEEEE-EeC--------------
Q 001358          921 QTCRSLQTP-----------------------------DGVMTLAPSETHIQFHKDQTRFLL-VHE--------------  956 (1092)
Q Consensus       921 ~~~~~~~~~-----------------------------~~~~~~~~~v~~l~~s~dg~~la~-~~d--------------  956 (1092)
                      .........                             .+... ...-...+++|+..++.+ ..+              
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~G-g~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~  415 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG-AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC-SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeecccc-ccccccccccCCCCeeecccccccceeecccccccc
Confidence            432211000                             00000 001135678888887776 221              


Q ss_pred             ----------------------CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEE
Q 001358          957 ----------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1092)
Q Consensus       957 ----------------------~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~ 1014 (1092)
                                            +.+.-||+.+|+.+-+...+  .+..+-.++-.|.++++|+.||.++-+|..+|+.+.
T Consensus       416 ~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW  493 (560)
T d1kv9a2         416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (560)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeE
Confidence                                  35778899999887664332  222222345567788899999999999999999999


Q ss_pred             eeccc
Q 001358         1015 RILST 1019 (1092)
Q Consensus      1015 ~~~~~ 1019 (1092)
                      ++...
T Consensus       494 ~~~l~  498 (560)
T d1kv9a2         494 QFEAQ  498 (560)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            98744

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.72  E-value=0.013  Score=63.20  Aligned_cols=249  Identities=12%  Similarity=0.063  Sum_probs=137.1

Q ss_pred             CceEEeecCCCceEEEEEcCcC----cEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEE
Q 001358          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1092)
Q Consensus       336 ~V~~v~~spdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  411 (1092)
                      .+..+++||||++++.+-+.+|    .+++.|+.+|+.+.. .                 +.  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~-----------------i~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------LE--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------EE--EECSCCEEECTTSSEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-c-----------------cc--cccccceEEcCCCCEE
Confidence            3456678999997665555444    599999999986642 1                 11  0112458999999988


Q ss_pred             EEEeCC----------------CEEEEEEccCCCCccceEEecccc--cceeEEEeeCCCCcEEEEEEe-CCCcEEEE--
Q 001358          412 GVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-DDKTIKVW--  470 (1092)
Q Consensus       412 as~~~d----------------~~i~iwd~~~~~~~~~~~~l~~h~--~~v~~~~~s~d~~~l~l~s~~-~d~~i~vw--  470 (1092)
                      +....+                ..|..|.+.+...-. ...+....  ..+..+..++|++++++.+.. .+....+|  
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            765432                257777877654322 11233333  346677789999963333332 23344444  


Q ss_pred             ECCCCc--------eeEEEecCCcceEEEeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCCCCceEEEE
Q 001358          471 DAVTGS--------RTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMA  536 (1092)
Q Consensus       471 d~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~  536 (1092)
                      |+....        ....+......+..+..   .++.+++...   .++.|...++.....   ...+..+...+..-.
T Consensus       265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~  341 (430)
T d1qfma1         265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN---EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV  341 (430)
T ss_dssp             EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE---ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred             eCCCcccccccccceeEeecccccceEEEec---CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence            433221        11222222222222211   1222333332   235666667665443   222333444455445


Q ss_pred             EecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEe----CCCeEEEEECCCCce
Q 001358          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL  612 (1092)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s----~dg~i~iwd~~~~~~  612 (1092)
                      ++..+.+|+..... ++...|++++..++..........   +.+..+...++...+...-    .-.+++-+|+.+++.
T Consensus       342 ~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         342 ACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             EEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             EEEECCEEEEEEEc-CCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            55666666655432 457789999999887765544333   5566665556665554332    336788899988754

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.71  E-value=0.012  Score=65.78  Aligned_cols=81  Identities=16%  Similarity=0.190  Sum_probs=51.8

Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCe-EEEEEcCCCC-E
Q 001358          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-I  900 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~  900 (1092)
                      |.+.-+|+.+++.+.+...... ...-.++- .+.++++|+.||.++-+|.++|+.+.+++-..+.. .-+.+..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCC-CCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4678899999998876543221 11111222 35588889999999999999999998876322110 1145556785 5


Q ss_pred             EEEEe
Q 001358          901 LVSSG  905 (1092)
Q Consensus       901 l~s~s  905 (1092)
                      ++..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=0.03  Score=55.29  Aligned_cols=223  Identities=13%  Similarity=0.053  Sum_probs=139.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECC
Q 001358          395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~  473 (1092)
                      +...+..++|.+..+.|.... .++.|+..++.++....   .+......+..+++..-+.. +.++-...+.|.+.++.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecC
Confidence            445688899998887777664 56778888887654322   23233346788999876664 34455667899999987


Q ss_pred             CCceeEEEecCCcceEEEeecccCCccEEEEEecCC--eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCC
Q 001358          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1092)
Q Consensus       474 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1092)
                      .......+.........+++.|. .+.++.+-...+  .|..-+++...........-.....+++.+.++.|+.+..  
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~--  186 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--  186 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET--
T ss_pred             CceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC--
Confidence            65543333333456788888654 333444433323  3444456555444444434456689999999888877642  


Q ss_pred             CCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceEEEEeCCCCCCCCceEEE
Q 001358          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1092)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1092)
                       +.+.|...+.........+.+..    ....+++.  +.+|+.. ...+.|...|..+++.+..+..... .....++.
T Consensus       187 -~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v  258 (263)
T d1npea_         187 -GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITI  258 (263)
T ss_dssp             -TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEE
T ss_pred             -CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEE
Confidence             25678888887665544454433    34567765  4556555 4678899999999988776643332 23445554


Q ss_pred             cc
Q 001358          631 NK  632 (1092)
Q Consensus       631 s~  632 (1092)
                      .+
T Consensus       259 ~~  260 (263)
T d1npea_         259 AL  260 (263)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.70  E-value=0.0053  Score=65.45  Aligned_cols=125  Identities=10%  Similarity=0.163  Sum_probs=79.0

Q ss_pred             ceEEEEEecCCCEEEEEecCCC-------CceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCC-CeE
Q 001358          531 GCTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVI  602 (1092)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~d-g~i  602 (1092)
                      ++...+...+|+.++.++...+       ....+.+||+.+++..........+.......++.+++..++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            3344445567888777774321       12247799999887543322222111233456788999888887654 689


Q ss_pred             EEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC------CeEEEEECCCCCe
Q 001358          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNS  656 (1092)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~~~~~  656 (1092)
                      .+||..+......-..... ..-..++..+||++++.++.+      ..+.+||..+.+.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            9999988776543322222 223567788899999998753      4688999887644

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.68  E-value=0.0033  Score=70.80  Aligned_cols=77  Identities=10%  Similarity=0.081  Sum_probs=51.0

Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc----ccCCeEEEEEcCCC
Q 001358          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDAL  898 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg  898 (1092)
                      |.+.-||..+++.+-+..... ....-.++. .+.++++|+.||.++-+|.++|+.+.++.-    +..+   +.|..||
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P---~tY~~dG  527 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKG  527 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC---eEEEECC
Confidence            678889999998876543221 111112222 456888899999999999999999988763    3334   4455577


Q ss_pred             C-EEEEE
Q 001358          899 N-ILVSS  904 (1092)
Q Consensus       899 ~-~l~s~  904 (1092)
                      + +++..
T Consensus       528 kQYvav~  534 (596)
T d1w6sa_         528 TQYVAIY  534 (596)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5 44443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.63  E-value=0.084  Score=58.88  Aligned_cols=379  Identities=11%  Similarity=0.066  Sum_probs=192.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCc--------ce-EEEeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  527 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--------~v-~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  527 (1092)
                      .++.++.++.|.-.|.++|+.+.++.....        .+ ..+++    .+..++.++.|+.+.-.|..+++.......
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence            466778889999999999999988742210        01 11122    124677889999999899998887654332


Q ss_pred             CCCc----e--EEEEEec--CCCEEEEEecCC---CCceeEEEEeCCCCeEEEEEeeccc--------------------
Q 001358          528 PGLG----C--TRMAYSA--NGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQL--------------------  576 (1092)
Q Consensus       528 ~~~~----i--~~~~~s~--dg~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~--------------------  576 (1092)
                      ....    .  ....+.+  .+..++..+...   ...+.|.-+|..+|+.+-.+.....                    
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~  225 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence            1110    0  0011111  133333332211   2345688999999988776543220                    


Q ss_pred             -----------------cCCce-EEEEEcCCCCEEEEEeC------------------------CCeEEEEECCCCceEE
Q 001358          577 -----------------QHNSV-SVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT  614 (1092)
Q Consensus       577 -----------------~~~~v-~~~~~~~~~~~l~~~s~------------------------dg~i~iwd~~~~~~~~  614 (1092)
                                       ....+ ..+++.+....++.+..                        ...+.-.|..+|+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W  305 (582)
T d1flga_         226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence                             00111 23567777777776541                        2347778899999888


Q ss_pred             EEeCCCCCCCC-------ceEEEc-cCCC---EEEEEeCCCeEEEEECCCCCeeeecccccccceeeeecCCcccccccc
Q 001358          615 TIDAGGGLPEN-------PRICFN-KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1092)
Q Consensus       615 ~~~~~~~~~~v-------~~v~~s-~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  683 (1092)
                      .++...+....       ..+.+. .+++   .++..+.++.+.++|..+++.+....................      
T Consensus       306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~------  379 (582)
T d1flga_         306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG------  379 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC------
T ss_pred             cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccc------
Confidence            77654321111       111121 1332   566678899999999999987765443333322222211100      


Q ss_pred             cCCceeecCCCCCCcccceeeccccccceeceeeccCccceecccCCccccccEEEEEEecCCcEEEEeecCCeeEEeee
Q 001358          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1092)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~lw~~  763 (1092)
                         .........+  .....+....    +          .....|.......-...++.|+...+++...+....+|..
T Consensus       380 ---~~~~~~~~~~--~~~~~~~~~~----~----------~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~  440 (582)
T d1flga_         380 ---RPVEREGQRP--PLPEPGQKHG----K----------AVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE  440 (582)
T ss_dssp             ---CEEECTTCSC--CCCCTTCSSC----C----------CEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred             ---cceecccccc--cccccccccc----c----------eEEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence               0000000000  0000000000    0          0000111001111223467777666666655533333321


Q ss_pred             cCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEe-CCeEEEEEcCCceeeEEecCC
Q 001358          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP  842 (1092)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~  842 (1092)
                      ....                  ..+            ..........-+-     ... .|.+.-+|+.+++.+.+...+
T Consensus       441 ~~~~------------------~~g------------~~~~~~~~~~~~~-----~~~~~G~l~AiD~~TG~i~W~~~~~  485 (582)
T d1flga_         441 EVSY------------------TKG------------SAYLGMGFRIKRM-----YDDHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             CCCC------------------CTT------------SCCCCEEEEEEES-----CSSCSEEEEEECTTTCCEEEEEEES
T ss_pred             cccc------------------ccc------------ccccccCcccccc-----ccCCCCeEEEEcCCCCcEEeecCCC
Confidence            1100                  000            0000001111000     001 367888999999888776543


Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc----ccCCeEEEEEcCCCC-EEEEE
Q 001358          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALN-ILVSS  904 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~-~l~s~  904 (1092)
                      ...... .++. .+.++++|+.||.++-+|.++|+.+.+++-    +..+   +.|..||+ +++..
T Consensus       486 ~p~~~g-~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~qYv~i~  547 (582)
T d1flga_         486 LPLWAG-VLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGEQYLGVT  547 (582)
T ss_dssp             SCCCSC-CEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEE
T ss_pred             CCCccc-eeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEE
Confidence            322211 1223 456888899999999999999999988763    2233   56667885 44443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.62  E-value=0.055  Score=60.20  Aligned_cols=115  Identities=6%  Similarity=-0.111  Sum_probs=64.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEEeCCcEEEEEcCCceee
Q 001358          891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  970 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d~~v~lwd~~~~~~~  970 (1092)
                      ..+++|+..++.....+....+.......         ..+...   ....+...+..........|.|.-+|+.+|+.+
T Consensus       390 ~~a~dP~~~~~yv~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~  457 (571)
T d2ad6a1         390 VDSYDPESRTLYAGLNHICMDWEPFMLPY---------RAGQFF---VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK  457 (571)
T ss_dssp             BCEEETTTTEEEEEEECEEEEEEECCCCC---------CTTSCC---CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred             cceECCCCceEEEeccccccccccccccc---------cCCccc---cccceeeccccCCcccCCcccEEEeccCCCcee
Confidence            36788998888887776544333222100         000000   111222222211111112356788888888877


Q ss_pred             eeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeeccc
Q 001358          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1092)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~ 1019 (1092)
                      -+...+.  +..+-..+-.|.++++++.||.++-+|.++|+.+.++...
T Consensus       458 W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~  504 (571)
T d2ad6a1         458 WTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEcCCCC--CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence            6543322  1111122335668888999999999999999999888743

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.0066  Score=62.45  Aligned_cols=198  Identities=12%  Similarity=0.132  Sum_probs=125.0

Q ss_pred             EEEeeC---CCCcEEEEEEeCCCcEEEEECCCCceeEEEec-CCcceEEEeecccCCccEEEEEecCC------------
Q 001358          446 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------  509 (1092)
Q Consensus       446 ~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~l~s~~~dg------------  509 (1092)
                      .+.|..   ||++ +++.-..+.+|.+-|+++.++.+.+.. ....+..+.....++..+++.++.+.            
T Consensus        89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            455543   7886 566777889999999999998775543 23345556665566667888776633            


Q ss_pred             ------eEEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCC-----------CceeEEEE------------
Q 001358          510 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-----------GESFLVEW------------  560 (1092)
Q Consensus       510 ------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-----------~~~~i~iw------------  560 (1092)
                            .+.++|.++.+......... ....+.+++||+++++.+.+.+           ....+.++            
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                  35677887766655443322 4557899999999998764321           11223333            


Q ss_pred             -----------eCCCC---eEEEEEeeccccCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCc------------eE
Q 001358          561 -----------NESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ------------LL  613 (1092)
Q Consensus       561 -----------d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s-~dg~i~iwd~~~~~------------~~  613 (1092)
                                 |....   ..++.+...    .....+.++|||+++++++ -+.++.|+|+++-.            ..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVp----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             CcEEeCCceeecccccCCcceeEEEecC----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                       33221   111222221    3456789999999998865 78999999986311            11


Q ss_pred             EEEeCCCCCCCCceEEEccCCCEEEEEeCCCeEEEEECC
Q 001358          614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1092)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~  652 (1092)
                      ...+.  + ..-...+|+.+|.-..+..-|..|.-|++.
T Consensus       323 ~e~el--g-lgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         323 AEPEL--G-LGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECCBC--C-SCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             eeccc--C-cCccccccCCCceEEEEeeccceEEEEecc
Confidence            11111  1 123567888888766666789999999985

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.60  E-value=0.0017  Score=66.88  Aligned_cols=195  Identities=10%  Similarity=0.086  Sum_probs=126.6

Q ss_pred             EEEEe---cCCCEEEEEe--CCeEEEEEcCCceeeEEecCC-CCCeEEEEEcCC-CCCEEEEEeCCC-------------
Q 001358          807 CFALS---KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPH-DNNVIAIGMDDS-------------  866 (1092)
Q Consensus       807 ~~~~s---~dg~~l~~~s--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~-d~~~lasg~~dg-------------  866 (1092)
                      .+++.   +||+++.+..  +++|.+.|+.+.++.+...-+ ...+..+...++ ...|++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            44554   4899999997  588999999999986654432 345666665431 455777766532             


Q ss_pred             -----eEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEc-----------
Q 001358          867 -----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDV-----------  915 (1092)
Q Consensus       867 -----~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---------------~i~iwd~-----------  915 (1092)
                           .+.++|..+++...++.- .+....+++++||+++++.+.+.               .+.+++.           
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 367889999888777653 34566799999999999887532               1333332           


Q ss_pred             ------------CCCc-eeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE--eCCcEEEEEcCCceeee--------e
Q 001358          916 ------------DGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK--------Q  972 (1092)
Q Consensus       916 ------------~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--~d~~v~lwd~~~~~~~~--------~  972 (1092)
                                  .... ......+....       ....+.++|||++++++  -+.++.|+|++......        .
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             cEEeCCceeecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence                        2100 00011122222       34579999999999995  57889999996432110        0


Q ss_pred             e--ccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001358          973 W--FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1092)
Q Consensus       973 ~--~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~ 1009 (1092)
                      .  .....-....-+|+..|.-..|---|..|.-|++..
T Consensus       321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EEeecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            0  111245566788988886666666899999999854

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=0.038  Score=53.52  Aligned_cols=229  Identities=12%  Similarity=0.112  Sum_probs=143.7

Q ss_pred             EeecCCCceEEEEEcCcCcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEeCCCE
Q 001358          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1092)
Q Consensus       340 v~~spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~~d~~  419 (1092)
                      .-.+|..+ ++|.-+ ..++.|+|+++.+.++...+                    ..+|..-.|-.+. .|+..+ +..
T Consensus        68 AIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~ta  123 (327)
T d1utca2          68 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA  123 (327)
T ss_dssp             EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-SSE
T ss_pred             hhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-CCc
Confidence            34567777 566544 46899999999988876442                    3578788887554 454443 345


Q ss_pred             EEEEEccCCCCccceEEeccccc----ceeEEEeeCCCCcEEEEEE------eCCCcEEEEECCCCceeEEEecCCcceE
Q 001358          420 VQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITC------GDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1092)
Q Consensus       420 i~iwd~~~~~~~~~~~~l~~h~~----~v~~~~~s~d~~~l~l~s~------~~d~~i~vwd~~~~~~~~~~~~~~~~v~  489 (1092)
                      |+=|++++...  +...+..|..    .|..-..+++.+++ +++|      +-.|.+.+|..+.+ .-+.++||.+...
T Consensus       124 VYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~  199 (327)
T d1utca2         124 VYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA  199 (327)
T ss_dssp             EEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEE
T ss_pred             eEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeE
Confidence            99999976443  3334555543    57777788999963 3333      12367889996554 4567888887777


Q ss_pred             EEeecccCCcc-EEEEEe---cCCeEEEEEcCCCCc---e-----EEecCC----CCceEEEEEecCCCEEEEEecCCCC
Q 001358          490 SLCPHAKENIH-FIFSIS---VDGKIKAWLYDSLGA---R-----VDYDAP----GLGCTRMAYSANGRRLFSCGTSKEG  553 (1092)
Q Consensus       490 ~i~~~~~~~~~-~l~s~~---~dg~i~vwd~~~~~~---~-----~~~~~~----~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1092)
                      .+.+...+... +++.+.   ..+.+++.++.....   .     ..+..+    ..-..++..|+.-..++..+.    
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK----  275 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----  275 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----
Confidence            76654333222 333222   236788888865321   1     112111    223456777887777777764    


Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEE
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~  603 (1092)
                      .|.++++|+.++.++..-+-..   ..|...+-..+..-+++...+|.|.
T Consensus       276 ~G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         276 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CcEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence            6789999999999987666544   5666555555555666666666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.55  E-value=0.08  Score=59.06  Aligned_cols=195  Identities=14%  Similarity=0.186  Sum_probs=118.3

Q ss_pred             CeEEEEEcCCceeeEEecCCC-------------------------------------C-CeEEEEEcCCCCCEEEEEeC
Q 001358          823 GVISLYIVMTFKTILTIMPPS-------------------------------------P-TATSLAFNPHDNNVIAIGMD  864 (1092)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~-------------------------------------~-~i~~l~~s~~d~~~lasg~~  864 (1092)
                      |.|+-+|+.+|+.+.++....                                     . .-..+++.+ ...++..+..
T Consensus       182 G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg  260 (596)
T d1w6sa_         182 GYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTG  260 (596)
T ss_dssp             CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECC
T ss_pred             CceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccc
Confidence            789999999999987754211                                     0 112345666 5556655543


Q ss_pred             C----------------CeEEEEEcCCceeeEeecc--cc-------CCeEEEEE-cCCC---CEEEEEeCCCcEEEEEc
Q 001358          865 D----------------STILIYNARSSEVISKLEG--HS-------KRVTGLVF-SDAL---NILVSSGGDAQIFVWDV  915 (1092)
Q Consensus       865 d----------------g~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~-spdg---~~l~s~s~Dg~i~iwd~  915 (1092)
                      +                ..|.-.|+.+|+.+..++.  |.       ....-+.. ..+|   +.++..+.+|.+.++|-
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence            2                3577889999998876653  22       11111221 2344   46778889999999999


Q ss_pred             CCCceeeeeeeec------------------CCCCcCCC-------------CCceEEEEecCCCEEEEE-e--------
Q 001358          916 DGWGIQTCRSLQT------------------PDGVMTLA-------------PSETHIQFHKDQTRFLLV-H--------  955 (1092)
Q Consensus       916 ~~~~~~~~~~~~~------------------~~~~~~~~-------------~~v~~l~~s~dg~~la~~-~--------  955 (1092)
                      .+++.........                  +.......             ..-...+++|+..++.+. .        
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9987553221110                  00000000             001245677776665541 1        


Q ss_pred             -------------------------------CCcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001358          956 -------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1092)
Q Consensus       956 -------------------------------d~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~v 1004 (1092)
                                                     -+.|.-||..+|+.+-....  ..++.+-.++..|.+++.|+.||.++-
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A  498 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKA  498 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEE
Confidence                                           13577778888877654332  222333334556788889999999999


Q ss_pred             EECCCCceEEeecccc
Q 001358         1005 HEASNLEVQCRILSTA 1020 (1092)
Q Consensus      1005 wd~~~~~~~~~~~~~~ 1020 (1092)
                      +|..+|+.+.++....
T Consensus       499 ~Da~TGe~LW~~~~~~  514 (596)
T d1w6sa_         499 RDSDTGDLLWKFKIPS  514 (596)
T ss_dssp             EETTTCCEEEEEECSS
T ss_pred             EECCCCcEeeEEECCC
Confidence            9999999999987443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.46  E-value=0.14  Score=56.91  Aligned_cols=62  Identities=13%  Similarity=0.112  Sum_probs=46.2

Q ss_pred             CcEEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceEEeecccc
Q 001358          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1092)
Q Consensus       957 ~~v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~~~~~~~~ 1020 (1092)
                      |.|.-+|+.+|+.+-+...++  ++.+-..+..|.++++|+.||.++-+|.++|+.+.++....
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~  527 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS  527 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC
Confidence            467778888888776644332  22322345678889999999999999999999999988433

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.075  Score=52.38  Aligned_cols=234  Identities=9%  Similarity=-0.045  Sum_probs=143.0

Q ss_pred             CcEEEEecCCCCceeeeeeeeeecccccceeEEeeecCCCCcEEEEEECCCCCEEEEEe-CCCEEEEEEccCCCCccc-e
Q 001358          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQ-Q  434 (1092)
Q Consensus       357 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~-~  434 (1092)
                      ..|+-.++++.....                    +......+.+++|.+..+.|.-.. ..+.|.--++........ .
T Consensus        10 ~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~   69 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (266)
T ss_dssp             SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceE
Confidence            458888887654332                    222445678999999888887664 456677666654221111 1


Q ss_pred             EEecccccceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecccCCccEEEEE-ecCCeEEE
Q 001358          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKA  513 (1092)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~-~~dg~i~v  513 (1092)
                      ..+......+..+++.+.++. +.++-...+.|.+.++........+.........+++.+. .|.++++. +..+.|..
T Consensus        70 ~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          70 TVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             EEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEE
T ss_pred             EEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEeccCCCcceeE
Confidence            122233345778999877775 4455566788999998877655555555566788888654 33444443 23456766


Q ss_pred             EEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEE
Q 001358          514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI  593 (1092)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  593 (1092)
                      .+++...........-.....+++.+.++.|+.+..   ..+.|...++............. .......+++.  +.+|
T Consensus       148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~--~~~l  221 (266)
T d1ijqa1         148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKV  221 (266)
T ss_dssp             EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEE
T ss_pred             eccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCC-cccccEEEEEE--CCEE
Confidence            777665554444444456789999999988887743   25578888887655443343322 11335566665  3455


Q ss_pred             EEE-eCCCeEEEEECCCCceEEEEeC
Q 001358          594 LAA-GDDHVIKIWDMNKVQLLTTIDA  618 (1092)
Q Consensus       594 ~~~-s~dg~i~iwd~~~~~~~~~~~~  618 (1092)
                      +.+ ..++.|...+..++.....+..
T Consensus       222 y~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         222 FWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             EEEECCCCeEEEEECCCCcceEEEEc
Confidence            554 4677888888888776665543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.16  E-value=0.035  Score=62.01  Aligned_cols=106  Identities=11%  Similarity=-0.064  Sum_probs=63.7

Q ss_pred             ceeEEEEeCCCCeEEEEEeecccc-------CCce-EEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCC
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQ-------HNSV-SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~-------~~~v-~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1092)
                      ++.|+-+|..+|+.+-++......       ...+ ..+.+.  ...++.++.|+.+.-.|..+|+.+.......+...-
T Consensus        86 ~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~  163 (573)
T d1kb0a2          86 WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGS  163 (573)
T ss_dssp             GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSS
T ss_pred             CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccCccCCcce
Confidence            556999999999988776432100       0011 112222  346788889999999999999998776543221111


Q ss_pred             ceEEEcc--CCCEEEEEeC------CCeEEEEECCCCCeeeecc
Q 001358          626 PRICFNK--NGTLLAVIAN------ENRIKILETPESNSVDAAG  661 (1092)
Q Consensus       626 ~~v~~s~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~  661 (1092)
                      ..+.-.|  -+..+++++.      .|.|+-+|..+++.+-...
T Consensus       164 ~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         164 LTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             CBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            1111111  1334555432      4689999999998876654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.15  E-value=0.052  Score=58.23  Aligned_cols=250  Identities=9%  Similarity=0.007  Sum_probs=127.0

Q ss_pred             CCCcEEEEEECCCCCEEEEE-eCC----CEEEEEEccCCCCccceEEecccccceeEEEeeCCCCcEEEEEEe-------
Q 001358          395 PGVSVNRVVWSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-------  462 (1092)
Q Consensus       395 h~~~V~~l~~spdg~~las~-~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~l~l~s~~-------  462 (1092)
                      +.-.+..+++|||++++|.+ +..    ..+++.|+++|+.+..  .+.  ......++|++|++. ++.+.-       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~~  197 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYNAYPQQDGKS  197 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEEECCCCSSCC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE-EEEEEeccccCcc
Confidence            33445567899999999976 222    3799999999975432  121  112357899999995 233321       


Q ss_pred             --------CCCcEEEEECCCCce--eEEEecCCcceEEEeecccCCccEEEEEec---CCeEEEE--EcCCCCc------
Q 001358          463 --------DDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAW--LYDSLGA------  521 (1092)
Q Consensus       463 --------~d~~i~vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vw--d~~~~~~------  521 (1092)
                              ....|..|.+.+...  ...+.....+...+....+.++++++....   ++...+|  ++.....      
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~  277 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccc
Confidence                    122577787776543  233333333322222223556677654332   3334444  4332211      


Q ss_pred             --eEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeE--EEEEeeccccCCceEEEEEcCCCCEEEEE-
Q 001358          522 --RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAA-  596 (1092)
Q Consensus       522 --~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  596 (1092)
                        ............ ...+ +|..++..+.....++.|...++.....  ...+-.+.  ...+..-.+...+.+|+.. 
T Consensus       278 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~--~~~~~~~~~~~~~~~lvl~~  353 (430)
T d1qfma1         278 KWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLVLCY  353 (430)
T ss_dssp             CCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC--SSCEEEEEEEETTTEEEEEE
T ss_pred             ceeEeecccccceE-EEec-CCceeecccCcccccceeEEecCCCCccccceEEeccc--CcceeeeEEEEECCEEEEEE
Confidence              111121222222 2222 3344444333333456677777765432  12222221  1344443444445566554 


Q ss_pred             eCCC--eEEEEECCCCceEEEEeCCCCCCCCceEEEccCCCEEEEEeCC----CeEEEEECCCCC
Q 001358          597 GDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN  655 (1092)
Q Consensus       597 s~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~  655 (1092)
                      ..++  .|++++..++..........  ..+..+...++...+.....+    .++.-+|+.+++
T Consensus       354 ~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         354 LHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            3554  57889998887765544332  223334334555544443332    678888887764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.2  Score=48.32  Aligned_cols=258  Identities=10%  Similarity=0.094  Sum_probs=142.9

Q ss_pred             ceeEEEEeCCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEeCCCCCCCCceEEEccC
Q 001358          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1092)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~s~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1092)
                      ...|.+.|+..+....+-.-      ...+.-.+|..+.++.-+ ..++.+||+++.+.+........   |.--.|-.+
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi------~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis~  113 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL  113 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEEC------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESSS
T ss_pred             CceEEEEECCCCCcceeccc------chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecCC
Confidence            56788899876653322221      223455788887776654 56899999999999999887643   556666554


Q ss_pred             CCEEEEEeCCCeEEEEECCCC-CeeeecccccccceeeeecCCcccccccccCCceeecCCCCCCcccceeeccccccce
Q 001358          634 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1092)
Q Consensus       634 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1092)
                       +.|+..+. ..++-|++... .+...+..|..                                               
T Consensus       114 -~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~-----------------------------------------------  144 (327)
T d1utca2         114 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHSS-----------------------------------------------  144 (327)
T ss_dssp             -SEEEEECS-SEEEEEESSSSCCCEEEEECCGG-----------------------------------------------
T ss_pred             -CEEEEEcC-CceEEEcccCCCCchhhhhhccc-----------------------------------------------
Confidence             45555554 58999998532 11111111100                                               


Q ss_pred             eceeeccCccceecccCCccccccEEEEEEecCCcEEEEeec-------CCeeEEeeecCCcc-ccCcccccccCCcccc
Q 001358          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDL-TLSTEATTKVPPRLYQ  784 (1092)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~lw~~~~~~~-~~~~~~~~~~~~~~~~  784 (1092)
                                         -....|-....+++.++++..+-       .|.+.+|..+.... ..+|...         
T Consensus       145 -------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa---------  196 (327)
T d1utca2         145 -------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA---------  196 (327)
T ss_dssp             -------------------GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE---------
T ss_pred             -------------------ccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceee---------
Confidence                               01223444445555555443321       25566666544321 0011110         


Q ss_pred             CCCCCceeeecCCCCCCCCCeeEEEEecCCCEEEEEeCCeEEEEEcCCce---e------eEEecC---CCCCeEEEEEc
Q 001358          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---T------ILTIMP---PSPTATSLAFN  852 (1092)
Q Consensus       785 ~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~~---~------~~~~~~---~~~~i~~l~~s  852 (1092)
                           ++....+.+..+...+.  +|...+     ...+++.|.++.+..   .      +..+-.   ..+-..++.+|
T Consensus       197 -----~F~~~~~~g~~~~~~lf--~fa~r~-----~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs  264 (327)
T d1utca2         197 -----SFAQFKMEGNAEESTLF--CFAVRG-----QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS  264 (327)
T ss_dssp             -----EEEEECCTTCSSCEEEE--EEEEEE-----TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE
T ss_pred             -----eeEEEEcCCCCCCceEE--EEEECC-----CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee
Confidence                 12222222211222222  222111     013678888886421   1      111111   23455788888


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001358          853 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF  911 (1092)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~  911 (1092)
                      + .-.++..-+.-|.+++||++++.++..-+--.+.|-..+-..+..=++....+|.|.
T Consensus       265 ~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         265 E-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             T-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             c-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            8 666888999999999999999998877665566666555555544455555666554

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0027  Score=46.86  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhcc
Q 001358            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSS   59 (1092)
Q Consensus         5 ~~~~~~li~q~L~~~G~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~   59 (1092)
                      ++|+-+=|++||..+||.+++.+|.+|..+.++  ...-...+|+-+|..++.+=++
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK   63 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   63 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence            578999999999999999999999999988764  5666677888899888777443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.09  E-value=2  Score=43.12  Aligned_cols=199  Identities=12%  Similarity=0.131  Sum_probs=113.3

Q ss_pred             CCCEEEEEe-CCeEEEEEcCCceeeEEecCCCCCeEEEEEcC----C-CCCEEEEEe--CC--CeEEEEEcCC-ceeeEe
Q 001358          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP----H-DNNVIAIGM--DD--STILIYNARS-SEVISK  881 (1092)
Q Consensus       813 dg~~l~~~s-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~----~-d~~~lasg~--~d--g~v~iwd~~~-~~~~~~  881 (1092)
                      +..+++... .+-|.+||++ |+.+..+.  .+.+..+..-.    . ...-+++++  .+  .+|.+|.+.. ...+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            345555544 3559999985 77777764  34555544321    0 222344454  22  3688888753 223333


Q ss_pred             eccc-------cCCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEcCCCc--eeeeeeeecCCCCcCCCCCceEEEEecCC
Q 001358          882 LEGH-------SKRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1092)
Q Consensus       882 l~~h-------~~~V~~l~~--spd-g~-~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~~s~dg  948 (1092)
                      +...       ...+..+++  ++. |. +++....+|.+..|.+....  ......++.+...    ..+..|++.+..
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde~  191 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDEY  191 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETTT
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCCC
Confidence            3221       124667777  664 44 45666778999988874321  1222333333222    258899999999


Q ss_pred             CEEEEEeCC-cEEEEEcC-----CceeeeeeccC-CCcCEEEEEEe--cCCC-EEE-EEeCCCcEEEEECCCC-ceEEee
Q 001358          949 TRFLLVHET-HLAIYEAE-----ELTCLKQWFPI-SSVPISQATFS--CDCR-MVF-TSFVDGTLSIHEASNL-EVQCRI 1016 (1092)
Q Consensus       949 ~~la~~~d~-~v~lwd~~-----~~~~~~~~~~~-h~~~v~~l~fs--~dg~-~l~-t~s~Dg~i~vwd~~~~-~~~~~~ 1016 (1092)
                      ..|.++.++ .+..+++.     .+..+.....+ ....+-.++.-  .++. ||+ |.-.+++..|||..+. ..+.+|
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            999998654 35555543     12222221222 25677777643  3433 444 4446788999999874 777777


Q ss_pred             cc
Q 001358         1017 LS 1018 (1092)
Q Consensus      1017 ~~ 1018 (1092)
                      ..
T Consensus       272 ~i  273 (353)
T d1h6la_         272 QI  273 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.65  E-value=2.1  Score=43.10  Aligned_cols=160  Identities=9%  Similarity=0.099  Sum_probs=91.2

Q ss_pred             eeEEEeeCCCCcEEEEEEe------------CCCcEEEEECCCCcee-EEEecCC-------cceEEEeecccCCcc-EE
Q 001358          444 VNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSFEGHG-------APVYSLCPHAKENIH-FI  502 (1092)
Q Consensus       444 v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~-~~~~~~~-------~~v~~i~~~~~~~~~-~l  502 (1092)
                      --+++..|||.  .+++++            ..|.|.++|+.+.+.. ..+....       -....+.+....++. +|
T Consensus        37 ~EDi~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          37 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCEEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            34567777776  444443            1488999998765432 2221111       112334433344554 34


Q ss_pred             EEEe---cCCeEEEEEcCCCCceEE----ecC-CCCceEEEEEecCCCEEEEEecC-------------CCCceeEEEEe
Q 001358          503 FSIS---VDGKIKAWLYDSLGARVD----YDA-PGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEWN  561 (1092)
Q Consensus       503 ~s~~---~dg~i~vwd~~~~~~~~~----~~~-~~~~i~~~~~s~dg~~l~~~~~~-------------~~~~~~i~iwd  561 (1092)
                      ++..   ...+|.++++........    +.. .......+++..+|.++++--..             +...+.+.-||
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            4442   456788888765543322    222 22357889999999888873210             11234455555


Q ss_pred             CCCCeEEEEEeeccccCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc
Q 001358          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQ  611 (1092)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-s~dg~i~iwd~~~~~  611 (1092)
                      .  ++......+.    ...+.++++|++++|+++ +..+.|++|++....
T Consensus       195 ~--~~~~~~~~~l----~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         195 P--NDVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             S--SCEEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             C--CceEEEcCCC----CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence            4  3333333332    468899999999888765 467889999887543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.86  E-value=1.4  Score=44.85  Aligned_cols=186  Identities=7%  Similarity=-0.027  Sum_probs=105.7

Q ss_pred             cEEEEEEecCCcEEEEeecCCeeEEeeecCCccccCcccccccCCccccCCCCCceeeecCCCCCCCCCeeEEEEecCCC
Q 001358          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1092)
Q Consensus       736 ~i~~l~~s~~g~~l~~~~~dg~i~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~s~dg~  815 (1092)
                      ...-+++++....+++++.++ +.+-....-.......           ..........      .-..|..++|+.|  
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~-----------~~~~~~~~~~------~ip~v~~vafs~d--   97 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD-----------STPLTFKWEK------EIPDVIFVCFHGD--   97 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS-----------SCCCCCSEEE------ECTTEEEEEEETT--
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhcc-----------CCCCcceecc------CCCCeEEEEeeCC--
Confidence            455678888888788777775 4454432110000000           0000001111      1225788999755  


Q ss_pred             EEEEEeCCeEEEEEcCCceeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeeEeecc-----ccCCeE
Q 001358          816 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-----HSKRVT  890 (1092)
Q Consensus       816 ~l~~~sdg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~  890 (1092)
                      .++...++.+..++..+............++..+..+|   ..++....+|.+.++++..++......+     -.+.+.
T Consensus        98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_          98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            57777788888888876554444444456788888877   3566677899999999988764322211     235688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEE-EcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE
Q 001358          891 GLVFSDALNILVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1092)
Q Consensus       891 ~l~~spdg~~l~s~s~Dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~  953 (1092)
                      +++|++.|+.++++..++ ..+- ++..     ...+..+..   ....+.++.|-.+..++++
T Consensus       175 ~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~---~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         175 AVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPV---EEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             EEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCT---TTSEEEEEEESSSSEEEEE
T ss_pred             EEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcC---CCcceeEEEEecCceEEEE
Confidence            888888888887764332 1111 1111     011111111   1124778888877777776

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.55  E-value=1.8  Score=43.94  Aligned_cols=183  Identities=10%  Similarity=0.080  Sum_probs=108.4

Q ss_pred             CCeeEEEEecCCCEEEEEeCCeEEEEEcCCc-----------eeeEEecCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001358          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1092)
Q Consensus       803 ~~v~~~~~s~dg~~l~~~sdg~i~iwd~~~~-----------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1092)
                      ....-+++++...+++.|+...+.|..++.-           ......  .-..|..++|+. +  .|++. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence            3456788999888888888777888775321           111111  123689999975 3  45544 45668888


Q ss_pred             EcCCceeeEeeccccCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEE
Q 001358          872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1092)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l  951 (1092)
                      +..+-........-..++..+.++|.  .++....++.+.++++..+....  ...... .....+.+.+++|++.|+.+
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~--~~~~v~-~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ--LAQNVT-SFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE--EEESEE-EEEECSSEEEEEETTSCEEE
T ss_pred             EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccc--ccCCcc-eEEecCCceEEEEeCCcEEE
Confidence            87664433333334566888888775  56667788999999999875322  111000 00111357788888888888


Q ss_pred             EEEeCCcEEEE-EcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEe
Q 001358          952 LLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1092)
Q Consensus       952 a~~~d~~v~lw-d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s  997 (1092)
                      +++..+...+- ++.....+.. .......|.++.|-.+..++++-+
T Consensus       186 v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         186 FAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence            88644433332 2111111110 011345788999988777777553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.06  E-value=4.9  Score=40.06  Aligned_cols=194  Identities=15%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEEecCCcceEEEeecc----cCCccEEEEEec--C--CeEEEEEcCCCCc-eEEecC
Q 001358          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSISV--D--GKIKAWLYDSLGA-RVDYDA  527 (1092)
Q Consensus       457 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~~--d--g~i~vwd~~~~~~-~~~~~~  527 (1092)
                      +++....++-|.+||+ .|+.++.+.  .+.++.+....    ..+...++.++.  +  .+|.+|.+..... ...+..
T Consensus        42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            5666666767999997 488887664  35666665431    122223444442  2  3588887764332 222222


Q ss_pred             C-------CCceEEEEE--ecC-CCEEEEEecCCCCceeEEEEeC---CCC----eEEEEEeeccccCCceEEEEEcCCC
Q 001358          528 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK  590 (1092)
Q Consensus       528 ~-------~~~i~~~~~--s~d-g~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1092)
                      .       ...+..+|+  ++. |...+.... .  ++.+..|.+   ..+    +.++.+..    ...+..|.+.+..
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~  191 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY  191 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence            1       123566776  554 444444432 2  445666644   333    33444443    2578999999999


Q ss_pred             CEEEEEeCCCeEEEEECCC-----CceEEEEeCCCCCCCCceEEEc--cC--CCEEEEEeCCCeEEEEECCCC-Ceeeec
Q 001358          591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KN--GTLLAVIANENRIKILETPES-NSVDAA  660 (1092)
Q Consensus       591 ~~l~~~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~--~~~l~~~~~dg~i~iw~~~~~-~~~~~~  660 (1092)
                      ..|+.+-++..+..++.+.     +..+.......-...+-.++.-  ++  |-++++.-.+++..+|+.... ..+..+
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            9999999888776666542     2222222221122345556543  33  334444445789999998764 444333

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=1.3  Score=43.34  Aligned_cols=225  Identities=11%  Similarity=0.048  Sum_probs=106.5

Q ss_pred             CeEEEEEcCCcee--eEEecCCCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCCceee--EeeccccCCe
Q 001358          823 GVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARSSEVI--SKLEGHSKRV  889 (1092)
Q Consensus       823 g~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~~~~~--~~l~~h~~~V  889 (1092)
                      ..+.+||..+++-  +..+..+...-..+.+   ++++++.|+..         ..+.+||..+.+..  ..+..-...-
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV---GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE---CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            3588999887643  3223322222222222   45666666531         36778888765432  2221111111


Q ss_pred             EEEEEcCCCCEEEEEeCCCc-----EEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE-e-----CCc
Q 001358          890 TGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-----ETH  958 (1092)
Q Consensus       890 ~~l~~spdg~~l~s~s~Dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-----d~~  958 (1092)
                      .++.+  +++.++.++.++.     ...++..+...........  .      .....+...++.+++.+ .     ...
T Consensus        96 ~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------r~~~~~~~~~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          96 GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT--R------RIGVGVAVLNRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS--C------CBSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred             ecccc--ceeeEEecceecccccceeeeeccccCcccccccccc--c------cccceeeeeeecceEecCcccccccce
Confidence            22222  5666666655443     4456666643222111111  0      11112222344455443 2     245


Q ss_pred             EEEEEcCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceEEeeccccccCCCCccCcccc
Q 001358          959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYP 1033 (1092)
Q Consensus       959 v~lwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1033 (1092)
                      +..||..+.+............-.+ ....+++.++.++.+     .....+|..+......-    ..+..    .. .
T Consensus       166 ~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~----r~-~  235 (288)
T d1zgka1         166 AECYYPERNEWRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA----PMKHR----RS-A  235 (288)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC----CCSSC----CB-S
T ss_pred             EEEeecccccccccccccccccccc-ccceeeeEEEecCccccccccceeeeeecceeeeccc----CccCc----cc-c
Confidence            8889987765443322111111112 223456666666655     34667777776544211    11111    11 1


Q ss_pred             eEEEECCCCCCEEEEEeCCCc-----EEEEecCCCCCccccCCCCC
Q 001358         1034 HAIAAHPLKPTQFAVGLTNGE-----VYVIEPNEPGDTWAVLPPDE 1074 (1092)
Q Consensus      1034 ~~~~~~p~~~~~l~~~~~dg~-----v~~w~~~~~~~~~~~~~~~~ 1074 (1092)
                      .+++..  ++++++.|+.++.     |.+||+..  .+|...++..
T Consensus       236 ~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p  277 (288)
T d1zgka1         236 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDT--DTWSEVTRMT  277 (288)
T ss_dssp             CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT--TEEEEEEECS
T ss_pred             eEEEEE--CCEEEEEecCCCCeecceEEEEECCC--CEEEECCCCC
Confidence            223333  3678888876653     67788854  5698876543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.14  E-value=4.4  Score=42.50  Aligned_cols=113  Identities=11%  Similarity=0.082  Sum_probs=63.1

Q ss_pred             cCCeEEEEEcCCCCEEEEEeCCCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecC---CCEEEEE-e------
Q 001358          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV-H------  955 (1092)
Q Consensus       886 ~~~V~~l~~spdg~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~la~~-~------  955 (1092)
                      -...++|+|.|||++|++--..|.|++++..+++.....-+........-......++|+|+   ..++..+ .      
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            35678999999999998765579999998887664432222111111111135778999986   3444432 1      


Q ss_pred             -C----Cc--EEEEEcCCce-------ee-eeeccCCCcCEEEEEEecCCCEEEEEeC
Q 001358          956 -E----TH--LAIYEAEELT-------CL-KQWFPISSVPISQATFSCDCRMVFTSFV  998 (1092)
Q Consensus       956 -d----~~--v~lwd~~~~~-------~~-~~~~~~h~~~v~~l~fs~dg~~l~t~s~  998 (1092)
                       +    +.  +..+......       .+ .............|.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             1    11  2223322111       11 1111111234578999999998887764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.00  E-value=4.9  Score=42.06  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=61.4

Q ss_pred             CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee--Eeec------cccCCeEEEEEcCC---CCE-EEEEeC----
Q 001358          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA---LNI-LVSSGG----  906 (1092)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~------~h~~~V~~l~~spd---g~~-l~s~s~----  906 (1092)
                      -...++|+|.| |++++++--..|.|++++..+++..  ..+.      .-.+....|+|+|+   ..+ .++-+.    
T Consensus        26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            34678999999 8888886655799999998776532  2221      12356788999985   233 333210    


Q ss_pred             --C----C--cEEEEEcCCCceee--e-eeeecCCCCcCCCCCceEEEEecCCCEEEEE
Q 001358          907 --D----A--QIFVWDVDGWGIQT--C-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1092)
Q Consensus       907 --D----g--~i~iwd~~~~~~~~--~-~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~  954 (1092)
                        +    .  .+..+.........  . ..+........  .....++|.|||.+.++.
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~--H~gg~l~fgpDG~LYvs~  161 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD--HQSGRLVIGPDQKIYYTI  161 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS--CCEEEEEECTTSCEEEEE
T ss_pred             CcccccccceEEEeeecccccccccceEEEeeccccccc--ccccceeEcCCCCEEEEe
Confidence              1    1  13334433322111  1 11111111110  135799999999987774

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.37  E-value=7  Score=34.86  Aligned_cols=165  Identities=13%  Similarity=0.092  Sum_probs=98.6

Q ss_pred             EEEEEcCCceeeEEecCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCceee--Eeecccc-------CCeEEEEE
Q 001358          825 ISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHS-------KRVTGLVF  894 (1092)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~-------~~V~~l~~  894 (1092)
                      +.+-++........+.... -.|.+++..  |.+.+++|+....+.+|-++.|+..  ..+.+.+       +-|..+.+
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence            4455554222233333333 456677775  6789999999999999999988743  3333321       22333332


Q ss_pred             -cCCCCEEEEEeC-CCcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEEE----eCCcEEEEEcCCce
Q 001358          895 -SDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELT  968 (1092)
Q Consensus       895 -spdg~~l~s~s~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~----~d~~v~lwd~~~~~  968 (1092)
                       .+..+-++++.- .|.++|++-..|                   .+.....+++.+. ++.    .+....-+|.++++
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~  221 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS  221 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence             233333444444 555555555442                   3666777777776 433    22233356888776


Q ss_pred             eeeeeccCC------CcCEEEEEEecCCCEEEEEeCCCcEEEEECCCCceE
Q 001358          969 CLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1092)
Q Consensus       969 ~~~~~~~~h------~~~v~~l~fs~dg~~l~t~s~Dg~i~vwd~~~~~~~ 1013 (1092)
                      .-+.-+++.      ...|+-+-+.||+++++.+-.||.-+++.  +|+.+
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i  270 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV  270 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence            555434332      45677777999999988899999988885  45444

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.76  E-value=7.7  Score=34.57  Aligned_cols=154  Identities=8%  Similarity=0.061  Sum_probs=85.7

Q ss_pred             cceeEEEeeCCCCcEEEEEEeCCCcEEEEECCCCceeE--EEecCCcceEEE--------eecccCCccEEEEEec-CCe
Q 001358          442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYSL--------CPHAKENIHFIFSISV-DGK  510 (1092)
Q Consensus       442 ~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~i--------~~~~~~~~~~l~s~~~-dg~  510 (1092)
                      -+|.++++  |++. .+.+|+......+|-++.|+...  .+.+ -+.|+.+        .+. .++..-++++.. .|.
T Consensus       104 vRI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~  178 (313)
T d2hu7a1         104 MRILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGG  178 (313)
T ss_dssp             BEEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEE
T ss_pred             EEEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeee-cCCcceEEEEecccCC
Confidence            34555554  5565 66777777778888888886533  2221 1223333        221 112222333333 555


Q ss_pred             EEEEEcCCCCceEEecCCCCceEEEEEecCCCEEEEEecCCCCceeEEEEeCCCCeEEEE-Eeeccc---cCCceEEEEE
Q 001358          511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQL---QHNSVSVVHF  586 (1092)
Q Consensus       511 i~vwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~---~~~~v~~~~~  586 (1092)
                      +++++           ...+.++...++++.+. ++.-..-. +....-+|+++++..+. +.....   ..-.|.-+-+
T Consensus       179 lri~t-----------pkeGS~~~ay~~~gnKV-~sdyEt~g-Esywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         179 LRVFD-----------SGEGSFSSASISPGMKV-TAGLETAR-EARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEEC-----------CSSEEEEEEEECTTSCE-EEEEEESS-CEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             EEEec-----------CCCCcccceeEccCcee-eeccCCCC-ceEEEEEecccCceeeeecCcccceeecceEEEeeee
Confidence            55553           34456666666666555 55443332 33444669887765432 222110   1134556678


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCceEEE
Q 001358          587 DTAKDQILAAGDDHVIKIWDMNKVQLLTT  615 (1092)
Q Consensus       587 ~~~~~~l~~~s~dg~i~iwd~~~~~~~~~  615 (1092)
                      .|+++.++.+-.||.-++|.  +|+.+..
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             CCCCcEEEEEecCCchheee--cceEecC
Confidence            99999989999999999987  4555433

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.97  E-value=5.6  Score=38.39  Aligned_cols=175  Identities=11%  Similarity=-0.002  Sum_probs=82.7

Q ss_pred             eEEEEEcCCceeeE--EecCCCCCeEEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeeEeec--cccCCeEEEEE
Q 001358          824 VISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLE--GHSKRVTGLVF  894 (1092)
Q Consensus       824 ~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~~l~--~h~~~V~~l~~  894 (1092)
                      .+.+||..+.+...  .+......-.++.+   ++++++.|+.++     ....++..+..-...-.  ........+. 
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-  146 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-  146 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred             hhhhcccccccccccccccceecceecccc---ceeeEEecceecccccceeeeeccccCccccccccccccccceeee-
Confidence            47788887654432  22211112223333   556666665444     34456666544221111  1111111222 


Q ss_pred             cCCCCEEEEEeCC-----CcEEEEEcCCCceeeeeeeecCCCCcCCCCCceEEEEecCCCEEEE-EeC-----CcEEEEE
Q 001358          895 SDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYE  963 (1092)
Q Consensus       895 spdg~~l~s~s~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~-~~d-----~~v~lwd  963 (1092)
                       .+++.++.++.+     ..+..||...++..........        .....+...++.+++. +.+     .....||
T Consensus       147 -~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         147 -LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI--------RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             -eeecceEecCcccccccceEEEeeccccccccccccccc--------cccccccceeeeEEEecCccccccccceeeee
Confidence             244556655553     3478888877553322111111        1111222334455544 322     3578888


Q ss_pred             cCCceeeeeeccCCCcCEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCce
Q 001358          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEV 1012 (1092)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~s~Dg-----~i~vwd~~~~~~ 1012 (1092)
                      ..+.+....-. ....+....+...++++++.|+.++     .+.+||+.+.+.
T Consensus       218 ~~~~~~~~~~~-~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         218 VETETWTFVAP-MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             TTTTEEEECCC-CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             ecceeeecccC-ccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            87765443211 1112222222234788888887654     378899998754

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=0.49  Score=40.80  Aligned_cols=58  Identities=12%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             hhhHhHHhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccc
Q 001358           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL  129 (1092)
Q Consensus        72 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~  129 (1092)
                      ++|.|+-+.||||+..|...+|..++++.-..+.....++.++|..+.......+++.
T Consensus        45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~  102 (149)
T d2nxpa1          45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNET  102 (149)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHH
Confidence            8999999999999999999999999998655455556778888888877766655553